AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472740 MtrunA17_Chr3g0116171 96.124 516 17 1 75 587 352 867 0.0 1004
Msa0472740 MtrunA17_Chr4g0057731 84.384 333 45 3 75 404 356 684 0.0 565
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472740 AT5G63420.1 65.177 537 153 8 75 586 384 911 0.0 639

Find 162 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGACATTTACACATTTA+TGG 0.143360 3_3:+75149382 None:intergenic
TCCAAAAGATGCAAGATTTA+AGG 0.149877 3_3:+75153730 None:intergenic
GCCTTAAATCTTGCATCTTT+TGG 0.181875 3_3:-75153731 Msa0472740:CDS
TTGGCTGGAAACACCTTAAA+AGG 0.186376 3_3:-75152253 Msa0472740:CDS
CAGGGGAATCGGATGAATTT+TGG 0.207468 3_3:-75151095 Msa0472740:CDS
GGGCAGAATAAGAAATATTT+TGG 0.234453 3_3:-75149751 Msa0472740:three_prime_UTR
CAAATCTTTGTGGACATCTT+TGG 0.240355 3_3:-75150749 Msa0472740:CDS
CCTTAGCCCTAAAAGAATTA+TGG 0.243849 3_3:+75149608 None:intergenic
ATCCATGGATGAACATAAAA+AGG 0.267555 3_3:-75151939 Msa0472740:CDS
AGTACTTACATCGTTGGAAT+TGG 0.281197 3_3:-75154511 Msa0472740:CDS
CAAGTGATTCATGCTCCTTC+AGG 0.286343 3_3:+75152805 None:intergenic
GAAGGCGATTTATCTGATTC+AGG 0.300145 3_3:-75151114 Msa0472740:CDS
GCGATGAATGATTTCATAAT+CGG 0.301143 3_3:-75154546 Msa0472740:CDS
CCTTGGAAAAGAAAATTTAC+AGG 0.307438 3_3:-75152572 Msa0472740:intron
CTATCAAGGGAAAGAGTATA+TGG 0.320547 3_3:-75149537 Msa0472740:three_prime_UTR
ATCCATCATTTACATGGTTC+TGG 0.325333 3_3:-75149657 Msa0472740:three_prime_UTR
TGAAAGGAAGGATGGCTCTC+TGG 0.354049 3_3:-75150828 Msa0472740:CDS
CTTCTAAATGTTGATATTCC+AGG 0.354594 3_3:+75151962 None:intergenic
AATAGAAGGGTTCTTTCTAA+TGG 0.365515 3_3:-75152604 Msa0472740:CDS
ATTTCCATTCAATTTGTTGC+CGG 0.369154 3_3:+75149779 None:intergenic
ATCTTTGGCACTTAAATATG+AGG 0.370175 3_3:-75150734 Msa0472740:intron
ATCGCAATGGCAATTACTTC+GGG 0.381041 3_3:+75152052 None:intergenic
TTTCACACTTGAGAAATAGA+AGG 0.384172 3_3:-75152618 Msa0472740:CDS
ATGCACCAGGTTATTAAGAA+TGG 0.386575 3_3:-75152655 Msa0472740:intron
TTGTTTGCAGTGTGGTGGAC+TGG 0.387215 3_3:+75151912 None:intergenic
TTCCCTTGATAGCTTAGCTT+GGG 0.391980 3_3:+75149548 None:intergenic
AATATACATAGAACACTAAC+GGG 0.401800 3_3:-75149253 None:intergenic
TAGATGGCATCATTGTGATT+AGG 0.412496 3_3:-75152386 Msa0472740:intron
AATGAAAACTTACACACATC+TGG 0.415170 3_3:-75153372 Msa0472740:CDS
TCACATGGAATCAACGTTGC+TGG 0.415463 3_3:+75154456 Msa0472750:CDS
AGAATGAGAATTGCATTAGA+TGG 0.417290 3_3:-75152402 Msa0472740:CDS
TAACCCAAGCTAAGCTATCA+AGG 0.419408 3_3:-75149551 Msa0472740:three_prime_UTR
ATTGGATCAACAATAGTTAT+GGG 0.421279 3_3:-75153399 Msa0472740:CDS
GTACTTACATCGTTGGAATT+GGG 0.423890 3_3:-75154510 Msa0472740:CDS
GGCAAATCCCACGTTGGTCC+TGG 0.424025 3_3:-75151980 Msa0472740:CDS
GATTGGATCAACAATAGTTA+TGG 0.427638 3_3:-75153400 Msa0472740:CDS
TTTCCCTTGATAGCTTAGCT+TGG 0.427851 3_3:+75149547 None:intergenic
ATCACACGGGACTCATTACC+AGG 0.431628 3_3:+75153447 None:intergenic
GAATTACCACAAGATGTCTA+TGG 0.437596 3_3:-75152222 Msa0472740:CDS
ATTGGGGCGTGGGCGTGTAT+TGG 0.439664 3_3:+75149485 None:intergenic
GAGAAAGAGACCACTACAAC+TGG 0.440855 3_3:-75151141 Msa0472740:CDS
GAATTGGGAAGCTGGAACGA+TGG 0.442973 3_3:-75154495 Msa0472740:CDS
CTGGACAATGCAAATCTTTG+TGG 0.444645 3_3:-75150759 Msa0472740:CDS
ACATGCATATCGTGGAGAAT+TGG 0.445598 3_3:-75153349 Msa0472740:intron
GAATCACTTGGAAAATCAAC+TGG 0.447489 3_3:-75152792 Msa0472740:CDS
TCTAATGGTTTCATTTCCCT+TGG 0.447711 3_3:-75152589 Msa0472740:CDS
TATCGCAATGGCAATTACTT+CGG 0.447759 3_3:+75152051 None:intergenic
GGTTGTTTGAAGCAAATAAG+AGG 0.450175 3_3:-75154347 Msa0472740:CDS
GAGATAAACACAAAATTGTC+TGG 0.454789 3_3:-75152001 Msa0472740:CDS
TTTATCTGATTCAGGGGAAT+CGG 0.455159 3_3:-75151106 Msa0472740:CDS
AGTGATGGTGACAAAGCATT+TGG 0.457642 3_3:-75152453 Msa0472740:CDS
ATCAGACATTTCTTCAGACT+TGG 0.457953 3_3:+75150957 None:intergenic
GTTACAATAAGCAGATCCTT+AGG 0.463234 3_3:+75153881 None:intergenic
TCAACTGATGATGCAATGAA+TGG 0.463811 3_3:+75151069 None:intergenic
GATCTGCTTATTGTAACAAC+TGG 0.465028 3_3:-75153875 Msa0472740:CDS
GATGGGATCAGCAGAAGTCC+TGG 0.469354 3_3:-75150778 Msa0472740:CDS
CTTAGCTTGGGTTAGAATCA+AGG 0.471830 3_3:+75149560 None:intergenic
CCTTGGTAAGTTTGAAAGCA+TGG 0.473674 3_3:+75153702 None:intergenic
ATGAATCGCATATCAGAGAT+TGG 0.474239 3_3:-75153417 Msa0472740:CDS
TCTAATCAGGAGATCAAGAA+TGG 0.475221 3_3:-75149869 Msa0472740:intron
AATCAGCTTCTTGACTTCCT+CGG 0.476513 3_3:+75150888 None:intergenic
CTCAGAGCTTGTTGGCTGAT+GGG 0.478275 3_3:-75150795 Msa0472740:CDS
AATTGGGAAGCTGGAACGAT+GGG 0.478855 3_3:-75154494 Msa0472740:CDS
CACAAAGATTTGCATTGTCC+AGG 0.480128 3_3:+75150760 None:intergenic
TCTCAGAGCTTGTTGGCTGA+TGG 0.481622 3_3:-75150796 Msa0472740:CDS
GTTCTGGTAACATGGACAAT+TGG 0.483222 3_3:-75149641 Msa0472740:three_prime_UTR
TTGGAAAATCAACTGGCATT+CGG 0.486197 3_3:-75152785 Msa0472740:CDS
ATACAAAACAATATCTTCCT+TGG 0.488079 3_3:+75153685 None:intergenic
TCAAGAAGCTGATTGATTTG+CGG 0.490229 3_3:-75150879 Msa0472740:CDS
CAATTCTCATTCTTTCATCA+AGG 0.490742 3_3:+75152412 None:intergenic
GACAAAGCATTTGGTACATC+CGG 0.492657 3_3:-75152444 Msa0472740:CDS
GATGTCTATGGCTGGACAAA+GGG 0.497228 3_3:-75152210 Msa0472740:CDS
AAGGCGATTTATCTGATTCA+GGG 0.497243 3_3:-75151113 Msa0472740:CDS
CAAAAGTCCACTGGCTCACA+TGG 0.497633 3_3:-75152131 Msa0472740:CDS
CATACAACATTGATAGTCAT+AGG 0.497973 3_3:-75149347 Msa0472740:three_prime_UTR
CATCGTTGGAATTGGGAAGC+TGG 0.501956 3_3:-75154503 Msa0472740:CDS
ACCTCTTGTTTGCAGTGTGG+TGG 0.502821 3_3:+75151907 None:intergenic
GATTTAAAGTTGTGAAAGGA+AGG 0.508605 3_3:-75150840 Msa0472740:CDS
GAAAGGAAGGATGGCTCTCT+GGG 0.509095 3_3:-75150827 Msa0472740:CDS
TTTACATGGTTCTGGTAACA+TGG 0.510579 3_3:-75149649 Msa0472740:three_prime_UTR
CTGAAGGAGCATGAATCACT+TGG 0.511676 3_3:-75152804 Msa0472740:CDS
AGGTAATAGGCAACATGAAA+GGG 0.512954 3_3:-75149588 Msa0472740:three_prime_UTR
AACACCGGCAACAAATTGAA+TGG 0.517785 3_3:-75149783 Msa0472740:exon
AACAAGTATTCTCCATGTAC+AGG 0.517823 3_3:+75152828 None:intergenic
TGGCTGGAAACACCTTAAAA+GGG 0.519920 3_3:-75152252 Msa0472740:CDS
GTTGTTTGAAGCAAATAAGA+GGG 0.519961 3_3:-75154346 Msa0472740:CDS
AGAGATATCTCAGAGCTTGT+TGG 0.522256 3_3:-75150803 Msa0472740:CDS
TACCAGAACCATGTAAATGA+TGG 0.525460 3_3:+75149655 None:intergenic
AAGGTAATAGGCAACATGAA+AGG 0.525588 3_3:-75149589 Msa0472740:three_prime_UTR
TATTGATGCTTATGCACCTA+AGG 0.528326 3_3:-75153897 Msa0472740:CDS
GACAGATTTAAAGTTGTGAA+AGG 0.528331 3_3:-75150844 Msa0472740:CDS
CAAGTCTGAGCTAGGTGACC+AGG 0.529734 3_3:-75149686 Msa0472740:three_prime_UTR
TTCATCAAGGAAGAGTTCAC+CGG 0.530019 3_3:+75152425 None:intergenic
ATAGGCAACATGAAAGGGAT+TGG 0.530044 3_3:-75149583 Msa0472740:three_prime_UTR
TCAATTTGTCAGGTTATCCC+TGG 0.531224 3_3:-75153465 Msa0472740:intron
TTCCCGTCTTTGATTTCACA+TGG 0.532073 3_3:+75154441 Msa0472750:CDS
ATCAACATTTAGAAGATCCA+TGG 0.532606 3_3:-75151954 Msa0472740:CDS
TAAATGATGGATTATCATCC+TGG 0.533252 3_3:+75149668 None:intergenic
AGCAAATCAAGCTATCATCA+AGG 0.535154 3_3:+75149304 None:intergenic
TACCACAAGATGTCTATGGC+TGG 0.535188 3_3:-75152218 Msa0472740:CDS
ATGATAATCCATCATTTACA+TGG 0.537258 3_3:-75149663 Msa0472740:three_prime_UTR
TAAAGTTGTGAAAGGAAGGA+TGG 0.540086 3_3:-75150836 Msa0472740:CDS
ATTAAGAATGGAGAGATGCT+TGG 0.543149 3_3:-75152643 Msa0472740:CDS
TTCCATGTGAAATCAAAGAC+GGG 0.553880 3_3:-75154443 Msa0472740:CDS
GCCATTGCGATAGAAAATCC+TGG 0.555157 3_3:-75152040 Msa0472740:CDS
CTAATCAGGAGATCAAGAAT+GGG 0.558723 3_3:-75149868 Msa0472740:intron
CTGTCCCGTCAAAAGTCCAC+TGG 0.559295 3_3:-75152140 Msa0472740:CDS
GTCGGAGATGTTGAGGAAGA+TGG 0.562067 3_3:-75152098 Msa0472740:intron
TCACAACTTTAAATCTGTCA+CGG 0.562346 3_3:+75150848 None:intergenic
TATCAAGGGAAAGAGTATAT+GGG 0.563013 3_3:-75149536 Msa0472740:three_prime_UTR
AAATATACATAGAACACTAA+CGG 0.563379 3_3:-75149254 None:intergenic
ATTCCATGTGAAATCAAAGA+CGG 0.565258 3_3:-75154444 Msa0472740:CDS
TTGGCAATATCTTGAGGACA+TGG 0.567651 3_3:-75149828 Msa0472740:CDS
GAACTGTGTCGGAGATGTTG+AGG 0.569522 3_3:-75152105 Msa0472740:CDS
GCAAATCAAGCTATCATCAA+GGG 0.570671 3_3:+75149305 None:intergenic
GTCCAGCCATAGACATCTTG+TGG 0.573025 3_3:+75152216 None:intergenic
ACCACTACAACTGGAGCTGA+AGG 0.573383 3_3:-75151132 Msa0472740:CDS
TTCACACTTGAGAAATAGAA+GGG 0.575027 3_3:-75152617 Msa0472740:CDS
AATGACCACAAGTCTGAGCT+AGG 0.576602 3_3:-75149694 Msa0472740:three_prime_UTR
CAAATTGAATGGAAATGCGG+TGG 0.578525 3_3:-75149772 Msa0472740:exon
GTTTGAAGCAAATAAGAGGG+AGG 0.581020 3_3:-75154343 Msa0472740:intron
GGTCACCTAGCTCAGACTTG+TGG 0.581524 3_3:+75149689 None:intergenic
AGATGTCTATGGCTGGACAA+AGG 0.582028 3_3:-75152211 Msa0472740:CDS
CAATGGTTATGTTTCACGAA+AGG 0.585188 3_3:-75151028 Msa0472740:CDS
AACCCAAGCTAAGCTATCAA+GGG 0.588882 3_3:-75149550 Msa0472740:three_prime_UTR
GCCTTCAGCTCCAGTTGTAG+TGG 0.589034 3_3:+75151131 None:intergenic
GTTCTTTCCATGTGAGCCAG+TGG 0.589970 3_3:+75152124 None:intergenic
TGGTAATGAGTCCCGTGTGA+TGG 0.593761 3_3:-75153445 Msa0472740:CDS
TCACATGGAAAGAACTGTGT+CGG 0.607611 3_3:-75152116 Msa0472740:CDS
CCATGCTTTCAAACTTACCA+AGG 0.609185 3_3:-75153702 Msa0472740:CDS
TCCACCACACTGCAAACAAG+AGG 0.611195 3_3:-75151908 Msa0472740:intron
GTCTGAAGAAATGTCTGATG+CGG 0.611515 3_3:-75150953 Msa0472740:CDS
GATGATGGCATTGACACAGA+AGG 0.613399 3_3:-75151174 Msa0472740:CDS
AAATTGAATGGAAATGCGGT+GGG 0.618308 3_3:-75149771 Msa0472740:exon
AATATCTTGAGGACATGGAA+AGG 0.619122 3_3:-75149823 Msa0472740:CDS
TGGAGAATACTTGTTCCTGA+AGG 0.627983 3_3:-75152820 Msa0472740:CDS
GTTACCTCTTGTTTGCAGTG+TGG 0.633512 3_3:+75151904 None:intergenic
TGTAAATGTCTTCTGCGTTG+TGG 0.634999 3_3:-75149373 Msa0472740:three_prime_UTR
CGGGAATGATTCGAGAGCAG+TGG 0.637862 3_3:-75154424 Msa0472740:CDS
ATTGTAGTGTTAGATCTCAG+TGG 0.638687 3_3:-75154368 Msa0472740:CDS
TTGGGAAGCTGGAACGATGG+GGG 0.639176 3_3:-75154492 Msa0472740:CDS
GATTCATCATTTCCATCACA+CGG 0.639799 3_3:+75153433 None:intergenic
CAACAAATTGAATGGAAATG+CGG 0.642972 3_3:-75149775 Msa0472740:exon
AAATGTCTTCTGCGTTGTGG+TGG 0.643205 3_3:-75149370 Msa0472740:three_prime_UTR
ATTCATCATTTCCATCACAC+GGG 0.645095 3_3:+75153434 None:intergenic
ATTGGGAAGCTGGAACGATG+GGG 0.645551 3_3:-75154493 Msa0472740:CDS
AGGCGATTTATCTGATTCAG+GGG 0.651319 3_3:-75151112 Msa0472740:CDS
ATTGTCTAGTGATGAAACAC+CGG 0.652259 3_3:-75149798 Msa0472740:CDS
AAATCAATCAAAGCAAACAA+TGG 0.658404 3_3:-75151045 Msa0472740:CDS
TTGGATCAACAATAGTTATG+GGG 0.659409 3_3:-75153398 Msa0472740:CDS
ACATCTGGACATGCATATCG+TGG 0.659861 3_3:-75153357 Msa0472740:CDS
TTGATATTCCAGGACCAACG+TGG 0.664721 3_3:+75151972 None:intergenic
AAGATGGTGAGGAAGTACAG+TGG 0.672062 3_3:-75152082 Msa0472740:intron
TGAGGAAGTACAGTGGTAAG+CGG 0.677242 3_3:-75152075 Msa0472740:intron
ATGCAGTTGAAATATAGTGA+TGG 0.680617 3_3:-75152468 Msa0472740:intron
GCAAGATTTAAGGCAGCACG+TGG 0.681321 3_3:+75153740 None:intergenic
TGTACAGGAAGAAAATGTTG+CGG 0.705564 3_3:+75152843 None:intergenic
TGATATTCCAGGACCAACGT+GGG 0.714591 3_3:+75151973 None:intergenic
TTGTCTGGCAAATCCCACGT+TGG 0.720381 3_3:-75151986 Msa0472740:CDS
CAACTTTAAATCTGTCACGG+AGG 0.723247 3_3:+75150851 None:intergenic
TCACACGGGACTCATTACCA+GGG 0.727328 3_3:+75153448 None:intergenic
ATATACATAGAACACTAACG+GGG 0.789943 3_3:-75149252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAATTAGTTTGAAA+AGG + chr3_3:75150797-75150816 None:intergenic 10.0%
!!! AATTTTATTAATTTTGTTAG+TGG - chr3_3:75154380-75154399 Msa0472740:CDS 10.0%
!! TGTTAAAAATGTAAACAAAT+AGG + chr3_3:75149684-75149703 None:intergenic 15.0%
!! TTTGTGGATAAAAAAATATA+AGG + chr3_3:75150277-75150296 None:intergenic 15.0%
!! TAAAAAAAATTGAATAGACA+AGG + chr3_3:75150551-75150570 None:intergenic 15.0%
!!! TTATTAGATACTTTCTAAAA+GGG + chr3_3:75151279-75151298 None:intergenic 15.0%
!!! AAAAATATTTGGTGTAAATA+AGG + chr3_3:75152539-75152558 None:intergenic 15.0%
!!! TTATTTACACCAAATATTTT+TGG - chr3_3:75152538-75152557 Msa0472740:intron 15.0%
!! AAAATTACACCAAAAATATT+TGG + chr3_3:75152550-75152569 None:intergenic 15.0%
!!! TTATTTTTCTTTACTGATTT+TGG + chr3_3:75152882-75152901 None:intergenic 15.0%
!! AATCAGTAAAGAAAAATAAA+TGG - chr3_3:75152883-75152902 Msa0472740:intron 15.0%
!!! AATAATAATTTTAAGCATAC+TGG - chr3_3:75153145-75153164 Msa0472740:intron 15.0%
!!! AAATACTTTCTTTTTTTAAG+AGG - chr3_3:75153450-75153469 Msa0472740:CDS 15.0%
!!! TTAATATCCATAATTCTTTT+AGG - chr3_3:75154183-75154202 Msa0472740:intron 15.0%
!!! TAATATCCATAATTCTTTTA+GGG - chr3_3:75154184-75154203 Msa0472740:intron 15.0%
!! ACAAAAGAAACAAAAATATT+GGG + chr3_3:75154333-75154352 Msa0472750:five_prime_UTR 15.0%
!! TGTTCATATTTCATGAAATT+AGG + chr3_3:75149987-75150006 None:intergenic 20.0%
!! ATTTCATGAAATATGAACAT+TGG - chr3_3:75149988-75150007 Msa0472740:intron 20.0%
!! TTTATCTTGAAGCTTAATAT+GGG - chr3_3:75150182-75150201 Msa0472740:intron 20.0%
!!! AAAAAATACAAACTAGTTTG+TGG + chr3_3:75150293-75150312 None:intergenic 20.0%
!!! TGATTTAAAATCAATTTGTC+AGG - chr3_3:75150323-75150342 Msa0472740:intron 20.0%
!! ATATTGATACGTAAACTAAA+AGG + chr3_3:75150513-75150532 None:intergenic 20.0%
!!! AATTGTTTTTAAACTATCCT+TGG + chr3_3:75150616-75150635 None:intergenic 20.0%
!!! AAAACAATTTTGAAAGAAAC+TGG - chr3_3:75150627-75150646 Msa0472740:intron 20.0%
!!! AATAACATCTATATTTTTGC+AGG - chr3_3:75150909-75150928 Msa0472740:CDS 20.0%
!!! TATTAGATACTTTCTAAAAG+GGG + chr3_3:75151278-75151297 None:intergenic 20.0%
!! CTTATTAGATACTTTCTAAA+AGG + chr3_3:75151280-75151299 None:intergenic 20.0%
!!! AATAAGCTATCTGATTTTTT+TGG - chr3_3:75151294-75151313 Msa0472740:intron 20.0%
!!! ATAAGCTATCTGATTTTTTT+GGG - chr3_3:75151295-75151314 Msa0472740:intron 20.0%
!! TGCTGTAAAAGATAAATATT+AGG + chr3_3:75151493-75151512 None:intergenic 20.0%
!!! AATATTTATCTTTTACAGCA+TGG - chr3_3:75151493-75151512 Msa0472740:intron 20.0%
!!! CCAAACTTTCTAAATTTTTA+GGG + chr3_3:75151529-75151548 None:intergenic 20.0%
!! TATTTATACAGGTAAGAAAA+TGG + chr3_3:75152046-75152065 None:intergenic 20.0%
!! TACTATGATTATGATAAGAT+AGG + chr3_3:75152138-75152157 None:intergenic 20.0%
!! CATAGTAATCAAAACTTATT+TGG + chr3_3:75152390-75152409 None:intergenic 20.0%
!! TTATTATTTAAGTGATAGCA+TGG + chr3_3:75153133-75153152 None:intergenic 20.0%
!!! ATTTTAATGTAGAGAAAGTT+AGG - chr3_3:75153748-75153767 Msa0472740:CDS 20.0%
!! ATAAGTTATTGTTGAAATAG+TGG + chr3_3:75153902-75153921 None:intergenic 20.0%
!!! ACTTATTTTGTATTCTAATC+AGG - chr3_3:75153916-75153935 Msa0472740:intron 20.0%
!! CAAAAGAAACAAAAATATTG+GGG + chr3_3:75154332-75154351 Msa0472750:five_prime_UTR 20.0%
!! GACAAAAGAAACAAAAATAT+TGG + chr3_3:75154334-75154353 Msa0472750:five_prime_UTR 20.0%
!!! TAGTGTTCTATGTATATTTT+TGG + chr3_3:75154543-75154562 Msa0472750:intron 20.0%
!!! AGAAAAGGTATGATTTCTTT+TGG - chr3_3:75149523-75149542 Msa0472740:three_prime_UTR 25.0%
!!! GAAAAGGTATGATTTCTTTT+GGG - chr3_3:75149524-75149543 Msa0472740:three_prime_UTR 25.0%
!! CATTGTCTCTAATTTTACAT+AGG - chr3_3:75149865-75149884 Msa0472740:intron 25.0%
!! TGAAATTAGGCAGTATTTTA+AGG + chr3_3:75149974-75149993 None:intergenic 25.0%
! AATATGAACATTGGAATACA+AGG - chr3_3:75149997-75150016 Msa0472740:intron 25.0%
! ATACAAAACAATATCTTCCT+TGG + chr3_3:75150116-75150135 None:intergenic 25.0%
!!! TATTGTTTTGTATTCAGCTA+AGG - chr3_3:75150123-75150142 Msa0472740:intron 25.0%
! AAAATACTGCATTATCTGTT+TGG - chr3_3:75150152-75150171 Msa0472740:intron 25.0%
! CTTTATCTTGAAGCTTAATA+TGG - chr3_3:75150181-75150200 Msa0472740:intron 25.0%
! ATTGGATCAACAATAGTTAT+GGG - chr3_3:75150399-75150418 Msa0472740:intron 25.0%
! GCAGAGTTGTAATAATAATT+TGG + chr3_3:75150590-75150609 None:intergenic 25.0%
!! TTTTTCTTACCCAAATACTA+AGG + chr3_3:75150698-75150717 None:intergenic 25.0%
!! CTGTAAATTTTCTTTTCCAA+GGG + chr3_3:75151228-75151247 None:intergenic 25.0%
! AAAGAAAATTTACAGGTTAG+TGG - chr3_3:75151233-75151252 Msa0472740:intron 25.0%
! CCCTAAAAATTTAGAAAGTT+TGG - chr3_3:75151526-75151545 Msa0472740:intron 25.0%
!! GCCAAACTTTCTAAATTTTT+AGG + chr3_3:75151530-75151549 None:intergenic 25.0%
! AAAAATTTAGAAAGTTTGGC+TGG - chr3_3:75151530-75151549 Msa0472740:intron 25.0%
!! AATTCTTATCTTCCCTTTTA+AGG + chr3_3:75151561-75151580 None:intergenic 25.0%
!! TGCTTTTACCATGTATATAT+GGG + chr3_3:75152087-75152106 None:intergenic 25.0%
!!! CTATTTTTTGTGAAACTCAA+AGG - chr3_3:75152274-75152293 Msa0472740:CDS 25.0%
! TGCACTAATTAATAGAACAT+GGG + chr3_3:75152604-75152623 None:intergenic 25.0%
! GGTAAAACCATAAAAAATGA+TGG - chr3_3:75153203-75153222 Msa0472740:intron 25.0%
!! AAACCATAAAAAATGATGGA+TGG - chr3_3:75153207-75153226 Msa0472740:intron 25.0%
!!! AACCATAAAAAATGATGGAT+GGG - chr3_3:75153208-75153227 Msa0472740:intron 25.0%
! TCTTTGTAGTAAAACAAAGT+GGG + chr3_3:75153677-75153696 None:intergenic 25.0%
! TTCTTTGTAGTAAAACAAAG+TGG + chr3_3:75153678-75153697 None:intergenic 25.0%
!! ATTTTAGACCATGTATATCT+CGG - chr3_3:75153796-75153815 Msa0472740:intron 25.0%
! ATCTCGGTATTATCTATAAT+AGG - chr3_3:75153812-75153831 Msa0472740:intron 25.0%
! AAAAAATTGGCAATATCTTG+AGG - chr3_3:75153964-75153983 Msa0472740:intron 25.0%
!!! TATTTTGGTGAGCTATATTT+TGG - chr3_3:75154062-75154081 Msa0472740:intron 25.0%
! ATGATAATCCATCATTTACA+TGG - chr3_3:75154135-75154154 Msa0472740:intron 25.0%
! AGAAGACATTTACACATTTA+TGG + chr3_3:75154419-75154438 Msa0472750:CDS 25.0%
!! GAAAAAAGTACTTACATCGT+TGG - chr3_3:75149281-75149300 Msa0472740:three_prime_UTR 30.0%
ATTCCATGTGAAATCAAAGA+CGG - chr3_3:75149354-75149373 Msa0472740:three_prime_UTR 30.0%
! GTTGTTTGAAGCAAATAAGA+GGG - chr3_3:75149452-75149471 Msa0472740:three_prime_UTR 30.0%
!! TATTTGTTGTTGTTGTCTTG+AGG - chr3_3:75149496-75149515 Msa0472740:three_prime_UTR 30.0%
!! ATTTGTTGTTGTTGTCTTGA+GGG - chr3_3:75149497-75149516 Msa0472740:three_prime_UTR 30.0%
TGTTATAAGATTCAAGAGTG+AGG + chr3_3:75149589-75149608 None:intergenic 30.0%
! GACACAAAAGCACATATATT+TGG + chr3_3:75150030-75150049 None:intergenic 30.0%
! AATATATGTGCTTTTGTGTC+AGG - chr3_3:75150030-75150049 Msa0472740:intron 30.0%
TCCAAAAGATGCAAGATTTA+AGG + chr3_3:75150071-75150090 None:intergenic 30.0%
! TTTTGTATTCAGCTAAGGTA+TGG - chr3_3:75150128-75150147 Msa0472740:intron 30.0%
GCAGGTTGTAATTTCATAAT+AGG + chr3_3:75150224-75150243 None:intergenic 30.0%
!! AATATAAGGTGTTGCTAGAA+AGG + chr3_3:75150263-75150282 None:intergenic 30.0%
GATTGGATCAACAATAGTTA+TGG - chr3_3:75150398-75150417 Msa0472740:intron 30.0%
TTGGATCAACAATAGTTATG+GGG - chr3_3:75150400-75150419 Msa0472740:intron 30.0%
AATGAAAACTTACACACATC+TGG - chr3_3:75150426-75150445 Msa0472740:intron 30.0%
TTGATACGTAAACTAAAAGG+AGG + chr3_3:75150510-75150529 None:intergenic 30.0%
GTATTTGGGTAAGAAAAATG+AGG - chr3_3:75150700-75150719 Msa0472740:intron 30.0%
CATGAATGATTGTACTGAAA+AGG + chr3_3:75150831-75150850 None:intergenic 30.0%
!! AACATCTATATTTTTGCAGG+AGG - chr3_3:75150912-75150931 Msa0472740:CDS 30.0%
TTTCACACTTGAGAAATAGA+AGG - chr3_3:75151180-75151199 Msa0472740:intron 30.0%
TTCACACTTGAGAAATAGAA+GGG - chr3_3:75151181-75151200 Msa0472740:intron 30.0%
AATAGAAGGGTTCTTTCTAA+TGG - chr3_3:75151194-75151213 Msa0472740:intron 30.0%
! CCTGTAAATTTTCTTTTCCA+AGG + chr3_3:75151229-75151248 None:intergenic 30.0%
CCTTGGAAAAGAAAATTTAC+AGG - chr3_3:75151226-75151245 Msa0472740:intron 30.0%
TATTTCAACTGCATGAGAAA+AGG + chr3_3:75151324-75151343 None:intergenic 30.0%
ATGCAGTTGAAATATAGTGA+TGG - chr3_3:75151330-75151349 Msa0472740:intron 30.0%
CAATTCTCATTCTTTCATCA+AGG + chr3_3:75151389-75151408 None:intergenic 30.0%
AGAATGAGAATTGCATTAGA+TGG - chr3_3:75151396-75151415 Msa0472740:intron 30.0%
GAGATAAACACAAAATTGTC+TGG - chr3_3:75151797-75151816 Msa0472740:intron 30.0%
CTTCTAAATGTTGATATTCC+AGG + chr3_3:75151839-75151858 None:intergenic 30.0%
ATCAACATTTAGAAGATCCA+TGG - chr3_3:75151844-75151863 Msa0472740:intron 30.0%
ATCCATGGATGAACATAAAA+AGG - chr3_3:75151859-75151878 Msa0472740:intron 30.0%
! TTCCTTTTTATGTTCATCCA+TGG + chr3_3:75151864-75151883 None:intergenic 30.0%
!!! GTCAGTTTTGCTATTTATAC+AGG + chr3_3:75152057-75152076 None:intergenic 30.0%
!! CTGCTTTTACCATGTATATA+TGG + chr3_3:75152088-75152107 None:intergenic 30.0%
TAGTAGAATGCTACTGTTAT+TGG - chr3_3:75152218-75152237 Msa0472740:CDS 30.0%
AGTGAAAACCATAGTTAGAT+CGG + chr3_3:75152318-75152337 None:intergenic 30.0%
TTATCTTCACAAAACAATGC+TGG - chr3_3:75152345-75152364 Msa0472740:intron 30.0%
TTACTAAATAGACTGTAGTC+AGG + chr3_3:75152489-75152508 None:intergenic 30.0%
!! TGGTGTAAATAAGGTATTGA+AGG + chr3_3:75152530-75152549 None:intergenic 30.0%
CTGCACTAATTAATAGAACA+TGG + chr3_3:75152605-75152624 None:intergenic 30.0%
CTATTAATTAGTGCAGATGA+TGG - chr3_3:75152609-75152628 Msa0472740:CDS 30.0%
GAAAAATAAATGGAAAACCG+AGG - chr3_3:75152893-75152912 Msa0472740:intron 30.0%
TCACAACTTTAAATCTGTCA+CGG + chr3_3:75152953-75152972 None:intergenic 30.0%
! GACAGATTTAAAGTTGTGAA+AGG - chr3_3:75152954-75152973 Msa0472740:intron 30.0%
! GATTTAAAGTTGTGAAAGGA+AGG - chr3_3:75152958-75152977 Msa0472740:intron 30.0%
ATCTTTGGCACTTAAATATG+AGG - chr3_3:75153064-75153083 Msa0472740:intron 30.0%
TGTTTAATGATCAGTTTGTG+AGG - chr3_3:75153174-75153193 Msa0472740:intron 30.0%
!!! AACCCATCCATCATTTTTTA+TGG + chr3_3:75153213-75153232 None:intergenic 30.0%
AAATCGGTGTACATTGTTAT+GGG + chr3_3:75153404-75153423 None:intergenic 30.0%
TAAATCGGTGTACATTGTTA+TGG + chr3_3:75153405-75153424 None:intergenic 30.0%
ACAAGAAAAGCAACGTAAAT+CGG + chr3_3:75153420-75153439 None:intergenic 30.0%
!! TTGCTTTTCTTGTGTAAGAT+AGG - chr3_3:75153427-75153446 Msa0472740:CDS 30.0%
! AGGTTTTCTTGCATCTTTTT+CGG - chr3_3:75153470-75153489 Msa0472740:intron 30.0%
AAATATCAATTGCATGCCAT+AGG - chr3_3:75153604-75153623 Msa0472740:intron 30.0%
CTTTGTAGTAAAACAAAGTG+GGG + chr3_3:75153676-75153695 None:intergenic 30.0%
AGATAATACCGAGATATACA+TGG + chr3_3:75153807-75153826 None:intergenic 30.0%
TCGGTATTATCTATAATAGG+AGG - chr3_3:75153815-75153834 Msa0472740:intron 30.0%
CGGTATTATCTATAATAGGA+GGG - chr3_3:75153816-75153835 Msa0472740:intron 30.0%
GGAAAGATAGCAGAAAAAAT+TGG - chr3_3:75153951-75153970 Msa0472740:intron 30.0%
!! ATTTCCATTCAATTTGTTGC+CGG + chr3_3:75154022-75154041 None:intergenic 30.0%
CAACAAATTGAATGGAAATG+CGG - chr3_3:75154023-75154042 Msa0472740:intron 30.0%
! GGGCAGAATAAGAAATATTT+TGG - chr3_3:75154047-75154066 Msa0472740:intron 30.0%
!! TGAGCTATATTTTGGAAATG+TGG - chr3_3:75154070-75154089 Msa0472740:intron 30.0%
!! TAAATGATGGATTATCATCC+TGG + chr3_3:75154133-75154152 None:intergenic 30.0%
! TATCAAGGGAAAGAGTATAT+GGG - chr3_3:75154262-75154281 Msa0472740:intron 30.0%
!! GAAAGAGTATATGGGTTTTA+GGG - chr3_3:75154270-75154289 Msa0472740:intron 30.0%
!! AAAGAGTATATGGGTTTTAG+GGG - chr3_3:75154271-75154290 Msa0472740:intron 30.0%
! CATACAACATTGATAGTCAT+AGG - chr3_3:75154451-75154470 Msa0472740:CDS 30.0%
AGTACTTACATCGTTGGAAT+TGG - chr3_3:75149287-75149306 Msa0472740:three_prime_UTR 35.0%
GTACTTACATCGTTGGAATT+GGG - chr3_3:75149288-75149307 Msa0472740:three_prime_UTR 35.0%
TTCCATGTGAAATCAAAGAC+GGG - chr3_3:75149355-75149374 Msa0472740:three_prime_UTR 35.0%
ATTGTAGTGTTAGATCTCAG+TGG - chr3_3:75149430-75149449 Msa0472740:three_prime_UTR 35.0%
! GGTTGTTTGAAGCAAATAAG+AGG - chr3_3:75149451-75149470 Msa0472740:three_prime_UTR 35.0%
TTGTCTTGAGGGAAAAGAAA+AGG - chr3_3:75149508-75149527 Msa0472740:three_prime_UTR 35.0%
! AGGAGGTGTATATTGTGATT+GGG + chr3_3:75149569-75149588 None:intergenic 35.0%
TATAAGATTCAAGAGTGAGG+AGG + chr3_3:75149586-75149605 None:intergenic 35.0%
ATTAGAGACAATGAGATGCA+GGG + chr3_3:75149858-75149877 None:intergenic 35.0%
AATTAGAGACAATGAGATGC+AGG + chr3_3:75149859-75149878 None:intergenic 35.0%
! TTTTACATAGGTGAAAGCAG+AGG - chr3_3:75149877-75149896 Msa0472740:intron 35.0%
TATTGATGCTTATGCACCTA+AGG - chr3_3:75149901-75149920 Msa0472740:intron 35.0%
GTTACAATAAGCAGATCCTT+AGG + chr3_3:75149920-75149939 None:intergenic 35.0%
GATCTGCTTATTGTAACAAC+TGG - chr3_3:75149923-75149942 Msa0472740:intron 35.0%
! GCCTTAAATCTTGCATCTTT+TGG - chr3_3:75150067-75150086 Msa0472740:intron 35.0%
ATTCATCATTTCCATCACAC+GGG + chr3_3:75150367-75150386 None:intergenic 35.0%
GATTCATCATTTCCATCACA+CGG + chr3_3:75150368-75150387 None:intergenic 35.0%
ATGAATCGCATATCAGAGAT+TGG - chr3_3:75150381-75150400 Msa0472740:intron 35.0%
TATTACAACTCTGCTAACCA+AGG - chr3_3:75150596-75150615 Msa0472740:intron 35.0%
TGTACAGGAAGAAAATGTTG+CGG + chr3_3:75150958-75150977 None:intergenic 35.0%
! CAACATTTTCTTCCTGTACA+TGG - chr3_3:75150958-75150977 Msa0472740:CDS 35.0%
AACAAGTATTCTCCATGTAC+AGG + chr3_3:75150973-75150992 None:intergenic 35.0%
GAATCACTTGGAAAATCAAC+TGG - chr3_3:75151006-75151025 Msa0472740:CDS 35.0%
TTGGAAAATCAACTGGCATT+CGG - chr3_3:75151013-75151032 Msa0472740:CDS 35.0%
CTTTATCACAAGATCTGTCT+GGG + chr3_3:75151062-75151081 None:intergenic 35.0%
TCTTTATCACAAGATCTGTC+TGG + chr3_3:75151063-75151082 None:intergenic 35.0%
ATGCACCAGGTTATTAAGAA+TGG - chr3_3:75151143-75151162 Msa0472740:CDS 35.0%
TCTCTCCATTCTTAATAACC+TGG + chr3_3:75151151-75151170 None:intergenic 35.0%
ATTAAGAATGGAGAGATGCT+TGG - chr3_3:75151155-75151174 Msa0472740:CDS 35.0%
TCTAATGGTTTCATTTCCCT+TGG - chr3_3:75151209-75151228 Msa0472740:intron 35.0%
TAGATGGCATCATTGTGATT+AGG - chr3_3:75151412-75151431 Msa0472740:intron 35.0%
GAATTACCACAAGATGTCTA+TGG - chr3_3:75151576-75151595 Msa0472740:intron 35.0%
TATCGCAATGGCAATTACTT+CGG + chr3_3:75151750-75151769 None:intergenic 35.0%
ATATTGAACTGTCAACTGCT+GGG - chr3_3:75151940-75151959 Msa0472740:CDS 35.0%
TATACATGGTAAAAGCAGAG+TGG - chr3_3:75152090-75152109 Msa0472740:intron 35.0%
TATGTGAACCGATCTAACTA+TGG - chr3_3:75152307-75152326 Msa0472740:intron 35.0%
AAGCTAAGAAGTCTCACTTT+GGG - chr3_3:75152410-75152429 Msa0472740:CDS 35.0%
TTTGGGTGTAAATCTTGAGA+CGG - chr3_3:75152427-75152446 Msa0472740:CDS 35.0%
AAGGCGATTTATCTGATTCA+GGG - chr3_3:75152685-75152704 Msa0472740:intron 35.0%
TTTATCTGATTCAGGGGAAT+CGG - chr3_3:75152692-75152711 Msa0472740:intron 35.0%
! TCAACTGATGATGCAATGAA+TGG + chr3_3:75152732-75152751 None:intergenic 35.0%
CAATGGTTATGTTTCACGAA+AGG - chr3_3:75152770-75152789 Msa0472740:intron 35.0%
ATCAGACATTTCTTCAGACT+TGG + chr3_3:75152844-75152863 None:intergenic 35.0%
!!! TTTACTGATTTTGGAGACTC+TGG + chr3_3:75152873-75152892 None:intergenic 35.0%
!! TCAAGAAGCTGATTGATTTG+CGG - chr3_3:75152919-75152938 Msa0472740:intron 35.0%
TAAAGTTGTGAAAGGAAGGA+TGG - chr3_3:75152962-75152981 Msa0472740:intron 35.0%
CAAATCTTTGTGGACATCTT+TGG - chr3_3:75153049-75153068 Msa0472740:intron 35.0%
AGGGAGAAAATTTCATGGAT+TGG + chr3_3:75153260-75153279 None:intergenic 35.0%
TCAAGGTCAATTTAGTACGA+GGG + chr3_3:75153279-75153298 None:intergenic 35.0%
CTGATATAGAAGTTTCCTCA+AGG + chr3_3:75153296-75153315 None:intergenic 35.0%
TGAAACTACAACTTACATGG+CGG - chr3_3:75153495-75153514 Msa0472740:intron 35.0%
AAGCAATTGAAGGGAAGATT+AGG + chr3_3:75153532-75153551 None:intergenic 35.0%
AAAGGGTAATGTACTACCTA+TGG + chr3_3:75153623-75153642 None:intergenic 35.0%
! CATTACCCTTTTATCATTGC+TGG - chr3_3:75153632-75153651 Msa0472740:intron 35.0%
CGAAAAAAGACAGAGTTGAA+CGG + chr3_3:75153715-75153734 None:intergenic 35.0%
! TTCAGCTTTAGTACAAGTGT+AGG - chr3_3:75153845-75153864 Msa0472740:intron 35.0%
TCTAATCAGGAGATCAAGAA+TGG - chr3_3:75153929-75153948 Msa0472740:intron 35.0%
CTAATCAGGAGATCAAGAAT+GGG - chr3_3:75153930-75153949 Msa0472740:intron 35.0%
AATATCTTGAGGACATGGAA+AGG - chr3_3:75153975-75153994 Msa0472740:intron 35.0%
ATTGTCTAGTGATGAAACAC+CGG - chr3_3:75154000-75154019 Msa0472740:intron 35.0%
AAATTGAATGGAAATGCGGT+GGG - chr3_3:75154027-75154046 Msa0472740:intron 35.0%
!! GCTATATTTTGGAAATGTGG+CGG - chr3_3:75154073-75154092 Msa0472740:intron 35.0%
!! CTATATTTTGGAAATGTGGC+GGG - chr3_3:75154074-75154093 Msa0472740:intron 35.0%
ATCCATCATTTACATGGTTC+TGG - chr3_3:75154141-75154160 Msa0472740:intron 35.0%
TACCAGAACCATGTAAATGA+TGG + chr3_3:75154146-75154165 None:intergenic 35.0%
!! TTTACATGGTTCTGGTAACA+TGG - chr3_3:75154149-75154168 Msa0472740:intron 35.0%
CCTTAGCCCTAAAAGAATTA+TGG + chr3_3:75154193-75154212 None:intergenic 35.0%
!!! CCATAATTCTTTTAGGGCTA+AGG - chr3_3:75154190-75154209 Msa0472740:intron 35.0%
!!! TCTTTTAGGGCTAAGGTAAT+AGG - chr3_3:75154197-75154216 Msa0472740:intron 35.0%
AAGGTAATAGGCAACATGAA+AGG - chr3_3:75154209-75154228 Msa0472740:intron 35.0%
AGGTAATAGGCAACATGAAA+GGG - chr3_3:75154210-75154229 Msa0472740:intron 35.0%
! CTATCAAGGGAAAGAGTATA+TGG - chr3_3:75154261-75154280 Msa0472740:intron 35.0%
!! GGAAAGAGTATATGGGTTTT+AGG - chr3_3:75154269-75154288 Msa0472740:intron 35.0%
!!! AAGAGTATATGGGTTTTAGG+GGG - chr3_3:75154272-75154291 Msa0472740:intron 35.0%
AAACAAAAATATTGGGGCGT+GGG + chr3_3:75154326-75154345 Msa0472750:five_prime_UTR 35.0%
! ATTTTGTTAGTGGCACGTTT+TGG - chr3_3:75154390-75154409 Msa0472740:CDS 35.0%
! TTTTGTTAGTGGCACGTTTT+GGG - chr3_3:75154391-75154410 Msa0472740:CDS 35.0%
GCAAATCAAGCTATCATCAA+GGG + chr3_3:75154496-75154515 Msa0472750:CDS 35.0%
AGCAAATCAAGCTATCATCA+AGG + chr3_3:75154497-75154516 Msa0472750:CDS 35.0%
! TTCCCGTCTTTGATTTCACA+TGG + chr3_3:75149360-75149379 None:intergenic 40.0%
! GTTTGAAGCAAATAAGAGGG+AGG - chr3_3:75149455-75149474 Msa0472740:three_prime_UTR 40.0%
! AGGTATGATTTCTTTTGGGC+TGG - chr3_3:75149528-75149547 Msa0472740:three_prime_UTR 40.0%
! GGTATGATTTCTTTTGGGCT+GGG - chr3_3:75149529-75149548 Msa0472740:three_prime_UTR 40.0%
! GAGGAGGTGTATATTGTGAT+TGG + chr3_3:75149570-75149589 None:intergenic 40.0%
CCTTGGTAAGTTTGAAAGCA+TGG + chr3_3:75150099-75150118 None:intergenic 40.0%
CCATGCTTTCAAACTTACCA+AGG - chr3_3:75150096-75150115 Msa0472740:intron 40.0%
GGATTGGAAGTTAGAATAGC+AGG + chr3_3:75150242-75150261 None:intergenic 40.0%
!! AAGGTGTTGCTAGAAAGGAT+TGG + chr3_3:75150258-75150277 None:intergenic 40.0%
TCAATTTGTCAGGTTATCCC+TGG - chr3_3:75150333-75150352 Msa0472740:intron 40.0%
ACATGCATATCGTGGAGAAT+TGG - chr3_3:75150449-75150468 Msa0472740:intron 40.0%
AGAACAGGGAAAACATTGGA+AGG + chr3_3:75150675-75150694 None:intergenic 40.0%
AAGGAGAACAGGGAAAACAT+TGG + chr3_3:75150679-75150698 None:intergenic 40.0%
TCCCTGTTCTCCTTAGTATT+TGG - chr3_3:75150685-75150704 Msa0472740:intron 40.0%
CCCAAATACTAAGGAGAACA+GGG + chr3_3:75150689-75150708 None:intergenic 40.0%
CCCTGTTCTCCTTAGTATTT+GGG - chr3_3:75150686-75150705 Msa0472740:intron 40.0%
ACCCAAATACTAAGGAGAAC+AGG + chr3_3:75150690-75150709 None:intergenic 40.0%
TGGAGAATACTTGTTCCTGA+AGG - chr3_3:75150978-75150997 Msa0472740:CDS 40.0%
ACTGATGATCTTTATGCACC+AGG - chr3_3:75151130-75151149 Msa0472740:CDS 40.0%
! AGTGATGGTGACAAAGCATT+TGG - chr3_3:75151345-75151364 Msa0472740:intron 40.0%
! GACAAAGCATTTGGTACATC+CGG - chr3_3:75151354-75151373 Msa0472740:intron 40.0%
TTCATCAAGGAAGAGTTCAC+CGG + chr3_3:75151376-75151395 None:intergenic 40.0%
TTGGCTGGAAACACCTTAAA+AGG - chr3_3:75151545-75151564 Msa0472740:intron 40.0%
TGGCTGGAAACACCTTAAAA+GGG - chr3_3:75151546-75151565 Msa0472740:intron 40.0%
TCACATGGAAAGAACTGTGT+CGG - chr3_3:75151682-75151701 Msa0472740:intron 40.0%
ATCGCAATGGCAATTACTTC+GGG + chr3_3:75151749-75151768 None:intergenic 40.0%
! TCCAGGATTTTCTATCGCAA+TGG + chr3_3:75151762-75151781 None:intergenic 40.0%
CATATTGAACTGTCAACTGC+TGG - chr3_3:75151939-75151958 Msa0472740:CDS 40.0%
!! ATCTGGTTGGTTCACTTTTG+TGG - chr3_3:75151963-75151982 Msa0472740:CDS 40.0%
CCATGTATATATGGGATCGT+TGG + chr3_3:75152079-75152098 None:intergenic 40.0%
CCAACGATCCCATATATACA+TGG - chr3_3:75152076-75152095 Msa0472740:intron 40.0%
AAAATAGACCAGCTGAATGC+AGG + chr3_3:75152261-75152280 None:intergenic 40.0%
TCACAAAACAATGCTGGTGA+AGG - chr3_3:75152351-75152370 Msa0472740:intron 40.0%
GAAGCTAAGAAGTCTCACTT+TGG - chr3_3:75152409-75152428 Msa0472740:CDS 40.0%
GAAGGCGATTTATCTGATTC+AGG - chr3_3:75152684-75152703 Msa0472740:intron 40.0%
AGGCGATTTATCTGATTCAG+GGG - chr3_3:75152686-75152705 Msa0472740:intron 40.0%
GTCTGAAGAAATGTCTGATG+CGG - chr3_3:75152845-75152864 Msa0472740:CDS 40.0%
AATCAGCTTCTTGACTTCCT+CGG + chr3_3:75152913-75152932 None:intergenic 40.0%
CAACTTTAAATCTGTCACGG+AGG + chr3_3:75152950-75152969 None:intergenic 40.0%
AGAGATATCTCAGAGCTTGT+TGG - chr3_3:75152995-75153014 Msa0472740:intron 40.0%
CACAAAGATTTGCATTGTCC+AGG + chr3_3:75153041-75153060 None:intergenic 40.0%
CTGGACAATGCAAATCTTTG+TGG - chr3_3:75153039-75153058 Msa0472740:intron 40.0%
GATCAGTTTGTGAGGTACAA+AGG - chr3_3:75153182-75153201 Msa0472740:intron 40.0%
GTACGAGGGAGAAAATTTCA+TGG + chr3_3:75153265-75153284 None:intergenic 40.0%
CTCAAGGTCAATTTAGTACG+AGG + chr3_3:75153280-75153299 None:intergenic 40.0%
CTCGTACTAAATTGACCTTG+AGG - chr3_3:75153278-75153297 Msa0472740:intron 40.0%
GCGTGAAACTACAACTTACA+TGG - chr3_3:75153492-75153511 Msa0472740:intron 40.0%
AGCTGTGTGAAGCAATTGAA+GGG + chr3_3:75153541-75153560 None:intergenic 40.0%
TAGCTGTGTGAAGCAATTGA+AGG + chr3_3:75153542-75153561 None:intergenic 40.0%
TTCAATTGCTTCACACAGCT+AGG - chr3_3:75153541-75153560 Msa0472740:intron 40.0%
AGTCGCCAGCAATGATAAAA+GGG + chr3_3:75153640-75153659 None:intergenic 40.0%
AAGTCGCCAGCAATGATAAA+AGG + chr3_3:75153641-75153660 None:intergenic 40.0%
TTGGCAATATCTTGAGGACA+TGG - chr3_3:75153970-75153989 Msa0472740:intron 40.0%
AACACCGGCAACAAATTGAA+TGG - chr3_3:75154015-75154034 Msa0472740:intron 40.0%
CAAATTGAATGGAAATGCGG+TGG - chr3_3:75154026-75154045 Msa0472740:intron 40.0%
GTTCTGGTAACATGGACAAT+TGG - chr3_3:75154157-75154176 Msa0472740:intron 40.0%
ATAGGCAACATGAAAGGGAT+TGG - chr3_3:75154215-75154234 Msa0472740:intron 40.0%
! CTTAGCTTGGGTTAGAATCA+AGG + chr3_3:75154241-75154260 None:intergenic 40.0%
TAACCCAAGCTAAGCTATCA+AGG - chr3_3:75154247-75154266 Msa0472740:intron 40.0%
AACCCAAGCTAAGCTATCAA+GGG - chr3_3:75154248-75154267 Msa0472740:intron 40.0%
! TTCCCTTGATAGCTTAGCTT+GGG + chr3_3:75154253-75154272 None:intergenic 40.0%
! TTTCCCTTGATAGCTTAGCT+TGG + chr3_3:75154254-75154273 None:intergenic 40.0%
!!! AGAGTATATGGGTTTTAGGG+GGG - chr3_3:75154273-75154292 Msa0472740:intron 40.0%
GAAACAAAAATATTGGGGCG+TGG + chr3_3:75154327-75154346 Msa0472750:five_prime_UTR 40.0%
TGTAAATGTCTTCTGCGTTG+TGG - chr3_3:75154425-75154444 Msa0472740:CDS 40.0%
AATTGGGAAGCTGGAACGAT+GGG - chr3_3:75149304-75149323 Msa0472740:three_prime_UTR 45.0%
TCACATGGAATCAACGTTGC+TGG + chr3_3:75149345-75149364 None:intergenic 45.0%
ACATCTGGACATGCATATCG+TGG - chr3_3:75150441-75150460 Msa0472740:intron 45.0%
GAGGTGATTGTCTATCTTCG+TGG - chr3_3:75150719-75150738 Msa0472740:intron 45.0%
CAAGTGATTCATGCTCCTTC+AGG + chr3_3:75150996-75151015 None:intergenic 45.0%
! CTGAAGGAGCATGAATCACT+TGG - chr3_3:75150994-75151013 Msa0472740:CDS 45.0%
TATCACAAGATCTGTCTGGG+AGG + chr3_3:75151059-75151078 None:intergenic 45.0%
TACCACAAGATGTCTATGGC+TGG - chr3_3:75151580-75151599 Msa0472740:intron 45.0%
AGATGTCTATGGCTGGACAA+AGG - chr3_3:75151587-75151606 Msa0472740:intron 45.0%
GATGTCTATGGCTGGACAAA+GGG - chr3_3:75151588-75151607 Msa0472740:intron 45.0%
AGATGTTGAGGAAGATGGTG+AGG - chr3_3:75151705-75151724 Msa0472740:intron 45.0%
! AAGATGGTGAGGAAGTACAG+TGG - chr3_3:75151716-75151735 Msa0472740:intron 45.0%
! TGAGGAAGTACAGTGGTAAG+CGG - chr3_3:75151723-75151742 Msa0472740:intron 45.0%
GCCATTGCGATAGAAAATCC+TGG - chr3_3:75151758-75151777 Msa0472740:intron 45.0%
TCATCAGCAAAAACTGCTCC+AGG + chr3_3:75151779-75151798 None:intergenic 45.0%
TGATATTCCAGGACCAACGT+GGG + chr3_3:75151828-75151847 None:intergenic 45.0%
TTGATATTCCAGGACCAACG+TGG + chr3_3:75151829-75151848 None:intergenic 45.0%
! GTTACCTCTTGTTTGCAGTG+TGG + chr3_3:75151897-75151916 None:intergenic 45.0%
GTTATTGGCATGTGACACTC+AGG - chr3_3:75152233-75152252 Msa0472740:CDS 45.0%
!! GATGATGGCATTGACACAGA+AGG - chr3_3:75152624-75152643 Msa0472740:CDS 45.0%
GAGAAAGAGACCACTACAAC+TGG - chr3_3:75152657-75152676 Msa0472740:intron 45.0%
! CAGGGGAATCGGATGAATTT+TGG - chr3_3:75152703-75152722 Msa0472740:intron 45.0%
AATGACCACAAGTCTGAGCT+AGG - chr3_3:75154104-75154123 Msa0472740:intron 45.0%
AAATGTCTTCTGCGTTGTGG+TGG - chr3_3:75154428-75154447 Msa0472740:CDS 45.0%
CATCGTTGGAATTGGGAAGC+TGG - chr3_3:75149295-75149314 Msa0472740:three_prime_UTR 50.0%
GAATTGGGAAGCTGGAACGA+TGG - chr3_3:75149303-75149322 Msa0472740:three_prime_UTR 50.0%
ATTGGGAAGCTGGAACGATG+GGG - chr3_3:75149305-75149324 Msa0472740:three_prime_UTR 50.0%
! GCAAGATTTAAGGCAGCACG+TGG + chr3_3:75150061-75150080 None:intergenic 50.0%
TCACACGGGACTCATTACCA+GGG + chr3_3:75150353-75150372 None:intergenic 50.0%
ATCACACGGGACTCATTACC+AGG + chr3_3:75150354-75150373 None:intergenic 50.0%
! TGGTAATGAGTCCCGTGTGA+TGG - chr3_3:75150353-75150372 Msa0472740:intron 50.0%
GTCCAGCCATAGACATCTTG+TGG + chr3_3:75151585-75151604 None:intergenic 50.0%
!! TGAGCCAGTGGACTTTTGAC+GGG + chr3_3:75151665-75151684 None:intergenic 50.0%
!! GTGAGCCAGTGGACTTTTGA+CGG + chr3_3:75151666-75151685 None:intergenic 50.0%
!! CAAAAGTCCACTGGCTCACA+TGG - chr3_3:75151667-75151686 Msa0472740:intron 50.0%
GTTCTTTCCATGTGAGCCAG+TGG + chr3_3:75151677-75151696 None:intergenic 50.0%
GAACTGTGTCGGAGATGTTG+AGG - chr3_3:75151693-75151712 Msa0472740:intron 50.0%
GTCGGAGATGTTGAGGAAGA+TGG - chr3_3:75151700-75151719 Msa0472740:intron 50.0%
TTGTCTGGCAAATCCCACGT+TGG - chr3_3:75151812-75151831 Msa0472740:intron 50.0%
!! TTGTTTGCAGTGTGGTGGAC+TGG + chr3_3:75151889-75151908 None:intergenic 50.0%
TCCACCACACTGCAAACAAG+AGG - chr3_3:75151890-75151909 Msa0472740:intron 50.0%
! ACCTCTTGTTTGCAGTGTGG+TGG + chr3_3:75151894-75151913 None:intergenic 50.0%
AACTGTCAACTGCTGGGATC+TGG - chr3_3:75151946-75151965 Msa0472740:CDS 50.0%
CATGGTAAAAGCAGAGTGGC+AGG - chr3_3:75152094-75152113 Msa0472740:intron 50.0%
GGGTGTAAATCTTGAGACGG+TGG - chr3_3:75152430-75152449 Msa0472740:CDS 50.0%
ACCACTACAACTGGAGCTGA+AGG - chr3_3:75152666-75152685 Msa0472740:intron 50.0%
TGAAAGGAAGGATGGCTCTC+TGG - chr3_3:75152970-75152989 Msa0472740:intron 50.0%
GAAAGGAAGGATGGCTCTCT+GGG - chr3_3:75152971-75152990 Msa0472740:intron 50.0%
!! TCTCAGAGCTTGTTGGCTGA+TGG - chr3_3:75153002-75153021 Msa0472740:intron 50.0%
!! CTCAGAGCTTGTTGGCTGAT+GGG - chr3_3:75153003-75153022 Msa0472740:intron 50.0%
! ACAACTTACATGGCGGAGTG+AGG - chr3_3:75153502-75153521 Msa0472740:intron 50.0%
TTGGGAAGCTGGAACGATGG+GGG - chr3_3:75149306-75149325 Msa0472740:three_prime_UTR 55.0%
CGGGAATGATTCGAGAGCAG+TGG - chr3_3:75149374-75149393 Msa0472740:three_prime_UTR 55.0%
GTGGCCCTGAGTATGCTCTT+TGG - chr3_3:75151252-75151271 Msa0472740:intron 55.0%
! GGGGCCAAAGAGCATACTCA+GGG + chr3_3:75151259-75151278 None:intergenic 55.0%
! AGGGGCCAAAGAGCATACTC+AGG + chr3_3:75151260-75151279 None:intergenic 55.0%
CTGTCCCGTCAAAAGTCCAC+TGG - chr3_3:75151658-75151677 Msa0472740:intron 55.0%
GTCAACTGCTGGGATCTGGT+TGG - chr3_3:75151950-75151969 Msa0472740:CDS 55.0%
CAGAGTGGCAGGCAACAATC+AGG - chr3_3:75152105-75152124 Msa0472740:CDS 55.0%
CTCAGGTTCCTGCATTCAGC+TGG - chr3_3:75152250-75152269 Msa0472740:CDS 55.0%
GCCTTCAGCTCCAGTTGTAG+TGG + chr3_3:75152670-75152689 None:intergenic 55.0%
GATGGGATCAGCAGAAGTCC+TGG - chr3_3:75153020-75153039 Msa0472740:intron 55.0%
GGTCACCTAGCTCAGACTTG+TGG + chr3_3:75154112-75154131 None:intergenic 55.0%
CAAGTCTGAGCTAGGTGACC+AGG - chr3_3:75154112-75154131 Msa0472740:intron 55.0%
GGCAAATCCCACGTTGGTCC+TGG - chr3_3:75151818-75151837 Msa0472740:intron 60.0%
ATTGGGGCGTGGGCGTGTAT+TGG + chr3_3:75154316-75154335 Msa0472750:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75149255 75154565 75149255 ID=Msa0472740;Name=Msa0472740
chr3_3 mRNA 75149255 75154565 75149255 ID=Msa0472740-mRNA-1;Parent=Msa0472740;Name=Msa0472740-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.6|0.45|0.90|0.8|0.72|11|532|587
chr3_3 exon 75149255 75149882 75149255 ID=Msa0472740-mRNA-1:exon:19457;Parent=Msa0472740-mRNA-1
chr3_3 exon 75150735 75151195 75150735 ID=Msa0472740-mRNA-1:exon:19456;Parent=Msa0472740-mRNA-1
chr3_3 exon 75151909 75152089 75151909 ID=Msa0472740-mRNA-1:exon:19455;Parent=Msa0472740-mRNA-1
chr3_3 exon 75152099 75152309 75152099 ID=Msa0472740-mRNA-1:exon:19454;Parent=Msa0472740-mRNA-1
chr3_3 exon 75152387 75152484 75152387 ID=Msa0472740-mRNA-1:exon:19453;Parent=Msa0472740-mRNA-1
chr3_3 exon 75152573 75152668 75152573 ID=Msa0472740-mRNA-1:exon:19452;Parent=Msa0472740-mRNA-1
chr3_3 exon 75152776 75152889 75152776 ID=Msa0472740-mRNA-1:exon:19451;Parent=Msa0472740-mRNA-1
chr3_3 exon 75153350 75153475 75153350 ID=Msa0472740-mRNA-1:exon:19450;Parent=Msa0472740-mRNA-1
chr3_3 exon 75153676 75153768 75153676 ID=Msa0472740-mRNA-1:exon:19449;Parent=Msa0472740-mRNA-1
chr3_3 exon 75153868 75153933 75153868 ID=Msa0472740-mRNA-1:exon:19448;Parent=Msa0472740-mRNA-1
chr3_3 exon 75154344 75154565 75154344 ID=Msa0472740-mRNA-1:exon:19447;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75154344 75154565 75154344 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75153868 75153933 75153868 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75153676 75153768 75153676 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75153350 75153475 75153350 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75152776 75152889 75152776 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75152573 75152668 75152573 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75152387 75152484 75152387 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75152099 75152309 75152099 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75151909 75152089 75151909 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75150735 75151195 75150735 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 CDS 75149787 75149882 75149787 ID=Msa0472740-mRNA-1:cds;Parent=Msa0472740-mRNA-1
chr3_3 three_prime_UTR 75149255 75149786 75149255 ID=Msa0472740-mRNA-1:three_prime_utr;Parent=Msa0472740-mRNA-1
Gene Sequence

>Msa0472740

ATGAATGATTTCATAATCGGAAAATTGAAAAAAGTACTTACATCGTTGGAATTGGGAAGCTGGAACGATGGGGGTGCAGAGATTTCTCCAGCAACGTTGATTCCATGTGAAATCAAAGACGGGAATGATTCGAGAGCAGTGGTATCAAGCTTCATTGTTGCAGATTATCGATTCGATTGTAGTGTTAGATCTCAGTGGTTGTTTGAAGCAAATAAGAGGGAGGTGAAAGCAGAGGATATTGATGCTTATGCACCTAAGGATCTGCTTATTGTAACAACTGGCTCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTTTGGAAGTAGCCATGCTTTCAAACTTACCAAGGAAGATATTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCCCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAGAAATGAAAACTTACACACATCTGGACATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATACTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATTCGGCATACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAAAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTTGGTACATCCGGTGAACTCTTCCTTGATGAAAGAATGAGAATTGCATTAGATGGCATCATTGTGATTAGCATGGAAATATTTCGCCCTAAAAATTTAGAAAGTTTGGCTGGAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGTCTATGGCTGGACAAAGGGAAGCTGTTAGATGCACTATATAAAGCTGCTCATGCAGCTCTTTCTAGCTGTCCCGTCAAAAGTCCACTGGCTCACATGGAAAGAACTGTGTCGGAGATGTTGAGGAAGATGTACAGTGGTAAGCGGCCCGAAGTAATTGCCATTGCGATAGAAAATCCTGGAGCAGTTTTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCACGTTGGTCCTGGAATATCAACATTTAGAAGATCCATGGATGAACATAAAAAGGAAAACCAGTCCACCACACTGCAAACAAGAGATGATGGCATTGACACAGAAGGACTATTACTTGAGAAAGAGACCACTACAACTGGAGCTGAAGGCGATTTATCTGATTCAGGGGAATCGGATGAATTTTGGAAGCCATTCATTGCATCATCAGTTGAGAAATCAATCAAAGCAAACAATGGTTATGTTTCACGAAAGGAGCATAAGTCAAATATAAAGCAAGATGATTCTGAAGACATAGATGAAGCCAAGTCTGAAGAAATGTCTGATGCGGAGCCAGAGTCTCCAAAATCAGTAAAGAAAAATAAATGGAAAACCGAGGAAGTCAAGAAGCTGATTGATTTGCGGAGTGACCTCCGTGACAGATTTAAAGTTGTGAAAGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTTTGTGGACATCTTTGGCACTTAAATATGAGGAGATCAAGAATGGGAAAGATAGCAGAAAAAATTGGCAATATCTTGAGGACATGGAAAGGATATTGTCTAGTGATGAAACACCGGCAACAAATTGA

Protein sequence

>Msa0472740

MNDFIIGKLKKVLTSLELGSWNDGGAEISPATLIPCEIKDGNDSRAVVSSFIVADYRFDCSVRSQWLFEANKREVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLTKEDIVLYSAKVIPGNESRVMEMMNRISEIGSTIVMGRNENLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSGELFLDERMRIALDGIIVISMEIFRPKNLESLAGNTLKGKIRITTRCLWLDKGKLLDALYKAAHAALSSCPVKSPLAHMERTVSEMLRKMYSGKRPEVIAIAIENPGAVFADEINTKLSGKSHVGPGISTFRRSMDEHKKENQSTTLQTRDDGIDTEGLLLEKETTTTGAEGDLSDSGESDEFWKPFIASSVEKSIKANNGYVSRKEHKSNIKQDDSEDIDEAKSEEMSDAEPESPKSVKKNKWKTEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLALKYEEIKNGKDSRKNWQYLEDMERILSSDETPATN*