Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638540 | XP_003608387.1 | 97.561 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638540 | sp|Q8H183|BUP1_ARATH | 80.637 | 408 | 73 | 1 | 4 | 411 | 6 | 407 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638540 | G7JV36 | 97.561 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0638540 | 0.804204 | 2.417236e-49 | -8.615850e-47 |
| Msa0017320 | Msa0638540 | 0.805699 | 1.176861e-49 | -8.615850e-47 |
| Msa0018070 | Msa0638540 | 0.809950 | 1.468266e-50 | -8.615850e-47 |
| Msa0026910 | Msa0638540 | 0.800549 | 1.368310e-48 | -8.615850e-47 |
| Msa0030720 | Msa0638540 | 0.812902 | 3.355856e-51 | -8.615850e-47 |
| Msa0032080 | Msa0638540 | 0.808001 | 3.838021e-50 | -8.615850e-47 |
| Msa0043980 | Msa0638540 | 0.817995 | 2.469576e-52 | -8.615850e-47 |
| Msa0044000 | Msa0638540 | 0.807688 | 4.472987e-50 | -8.615850e-47 |
| Msa0049750 | Msa0638540 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0052400 | Msa0638540 | 0.809977 | 1.449410e-50 | -8.615850e-47 |
| Msa0058490 | Msa0638540 | 0.800034 | 1.741938e-48 | -8.615850e-47 |
| Msa0058510 | Msa0638540 | 0.802373 | 5.785228e-49 | -8.615850e-47 |
| Msa0061500 | Msa0638540 | 0.809342 | 1.983926e-50 | -8.615850e-47 |
| Msa0065950 | Msa0638540 | 0.819896 | 9.126686e-53 | -8.615850e-47 |
| Msa0074750 | Msa0638540 | 0.807270 | 5.485699e-50 | -8.615850e-47 |
| Msa0079130 | Msa0638540 | 0.800122 | 1.671513e-48 | -8.615850e-47 |
| Msa0079230 | Msa0638540 | 0.817510 | 3.177156e-52 | -8.615850e-47 |
| Msa0090550 | Msa0638540 | 0.803137 | 4.024304e-49 | -8.615850e-47 |
| Msa0111080 | Msa0638540 | 0.815347 | 9.686256e-52 | -8.615850e-47 |
| Msa0118540 | Msa0638540 | 0.811880 | 5.611007e-51 | -8.615850e-47 |
| Msa0604290 | Msa0638540 | 0.829556 | 4.817468e-55 | -8.615850e-47 |
| Msa0608140 | Msa0638540 | 0.805384 | 1.369829e-49 | -8.615850e-47 |
| Msa0608160 | Msa0638540 | 0.809274 | 2.052136e-50 | -8.615850e-47 |
| Msa0609100 | Msa0638540 | 0.818605 | 1.796793e-52 | -8.615850e-47 |
| Msa0626850 | Msa0638540 | 0.829772 | 4.269912e-55 | -8.615850e-47 |
| Msa0638540 | Msa0640940 | 0.812288 | 4.571629e-51 | -8.615850e-47 |
| Msa0638540 | Msa0641670 | 0.802424 | 5.648514e-49 | -8.615850e-47 |
| Msa0638540 | Msa0648080 | 0.806418 | 8.305380e-50 | -8.615850e-47 |
| Msa0638540 | Msa0664970 | 0.831374 | 1.731071e-55 | -8.615850e-47 |
| Msa0638540 | Msa0679360 | 0.816794 | 4.601188e-52 | -8.615850e-47 |
| Msa0638540 | Msa0698030 | 0.807258 | 5.520051e-50 | -8.615850e-47 |
| Msa0638540 | Msa0711130 | 0.835914 | 1.271263e-56 | -8.615850e-47 |
| Msa0638540 | Msa0743530 | 0.802466 | 5.537329e-49 | -8.615850e-47 |
| Msa0638540 | Msa0746170 | 0.815602 | 8.500774e-52 | -8.615850e-47 |
| Msa0638540 | Msa0746210 | 0.815129 | 1.082655e-51 | -8.615850e-47 |
| Msa0638540 | Msa0784480 | 0.808840 | 2.541076e-50 | -8.615850e-47 |
| Msa0638540 | Msa0789560 | 0.807850 | 4.132742e-50 | -8.615850e-47 |
| Msa0638540 | Msa0813860 | 0.821057 | 4.942840e-53 | -8.615850e-47 |
| Msa0638540 | Msa0842770 | 0.802788 | 4.751085e-49 | -8.615850e-47 |
| Msa0638540 | Msa0861570 | 0.803022 | 4.250046e-49 | -8.615850e-47 |
| Msa0638540 | Msa0879950 | 0.809267 | 2.058449e-50 | -8.615850e-47 |
| Msa0638540 | Msa0944830 | 0.807301 | 5.404709e-50 | -8.615850e-47 |
| Msa0638540 | Msa0944870 | 0.826501 | 2.620600e-54 | -8.615850e-47 |
| Msa0638540 | Msa0947800 | 0.819487 | 1.131852e-52 | -8.615850e-47 |
| Msa0638540 | Msa0974950 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
| Msa0638540 | Msa1018040 | 0.814314 | 1.640587e-51 | -8.615850e-47 |
| Msa0638540 | Msa1023180 | 0.831971 | 1.233512e-55 | -8.615850e-47 |
| Msa0638540 | Msa1043050 | 0.829578 | 4.760064e-55 | -8.615850e-47 |
| Msa0638540 | Msa1071320 | 0.803469 | 3.434296e-49 | -8.615850e-47 |
| Msa0638540 | Msa1072900 | 0.812039 | 5.181640e-51 | -8.615850e-47 |
| Msa0638540 | Msa1082020 | 0.820027 | 8.521190e-53 | -8.615850e-47 |
| Msa0638540 | Msa1093100 | 0.826109 | 3.248301e-54 | -8.615850e-47 |
| Msa0638540 | Msa1107260 | 0.800807 | 1.211954e-48 | -8.615850e-47 |
| Msa0638540 | Msa1121110 | 0.807403 | 5.142785e-50 | -8.615850e-47 |
| Msa0638540 | Msa1150710 | 0.832313 | 1.014913e-55 | -8.615850e-47 |
| Msa0638540 | Msa1155230 | 0.800571 | 1.353827e-48 | -8.615850e-47 |
| Msa0638540 | Msa1174040 | 0.808386 | 3.176854e-50 | -8.615850e-47 |
| Msa0638540 | Msa1188710 | 0.803338 | 3.655757e-49 | -8.615850e-47 |
| Msa0638540 | Msa1205480 | 0.816513 | 5.318891e-52 | -8.615850e-47 |
| Msa0638540 | Msa1205590 | 0.851596 | 8.008367e-61 | -8.615850e-47 |
| Msa0638540 | Msa1206100 | 0.840026 | 1.113771e-57 | -8.615850e-47 |
| Msa0638540 | Msa1239780 | 0.813555 | 2.412314e-51 | -8.615850e-47 |
| Msa0638540 | Msa1240970 | 0.813233 | 2.839786e-51 | -8.615850e-47 |
| Msa0638540 | Msa1250110 | 0.821166 | 4.665521e-53 | -8.615850e-47 |
| Msa0638540 | Msa1250530 | 0.860034 | 2.736094e-63 | -8.615850e-47 |
| Msa0638540 | Msa1250730 | 0.810692 | 1.015856e-50 | -8.615850e-47 |
| Msa0638540 | Msa1270660 | 0.811923 | 5.491140e-51 | -8.615850e-47 |
| Msa0638540 | Msa1295330 | 0.823032 | 1.722548e-53 | -8.615850e-47 |
| Msa0638540 | Msa1297530 | 0.861762 | 8.168375e-64 | -8.615850e-47 |
| Msa0638540 | Msa1302550 | 0.802396 | 5.722331e-49 | -8.615850e-47 |
| Msa0638540 | Msa1329550 | 0.841856 | 3.685893e-58 | -8.615850e-47 |
| Msa0638540 | Msa1416260 | 0.819272 | 1.267294e-52 | -8.615850e-47 |
| Msa0638540 | Msa1426910 | 0.808309 | 3.298986e-50 | -8.615850e-47 |
| Msa0638540 | Msa1430130 | 0.821979 | 3.027726e-53 | -8.615850e-47 |
| Msa0638540 | Msa1435270 | 0.824152 | 9.422321e-54 | -8.615850e-47 |
| Msa0638540 | Msa1438840 | 0.800938 | 1.139640e-48 | -8.615850e-47 |
| Msa0638540 | Msa1444120 | 0.800882 | 1.169734e-48 | -8.615850e-47 |
| Msa0638540 | Msa1448630 | 0.824652 | 7.187035e-54 | -8.615850e-47 |
| Msa0638540 | Msa1449750 | 0.800853 | 1.185776e-48 | -8.615850e-47 |
| Msa0638540 | Msa1454570 | 0.819308 | 1.243247e-52 | -8.615850e-47 |
| Msa0638540 | Msa1454960 | 0.802616 | 5.154559e-49 | -8.615850e-47 |
| Msa0638540 | Msa1458090 | 0.821934 | 3.100165e-53 | -8.615850e-47 |
| Msa0638540 | Msa1460320 | -0.801401 | 9.161298e-49 | -8.615850e-47 |
| Msa0638540 | Msa1460750 | 0.822276 | 2.582640e-53 | -8.615850e-47 |
| Msa0127800 | Msa0638540 | 0.807873 | 4.086787e-50 | -8.615850e-47 |
| Msa0130720 | Msa0638540 | 0.827989 | 1.153351e-54 | -8.615850e-47 |
| Msa0138020 | Msa0638540 | 0.805253 | 1.459726e-49 | -8.615850e-47 |
| Msa0142500 | Msa0638540 | 0.830160 | 3.433075e-55 | -8.615850e-47 |
| Msa0150230 | Msa0638540 | 0.801263 | 9.779653e-49 | -8.615850e-47 |
| Msa0152560 | Msa0638540 | 0.806609 | 7.568709e-50 | -8.615850e-47 |
| Msa0154920 | Msa0638540 | 0.822665 | 2.098113e-53 | -8.615850e-47 |
| Msa0171870 | Msa0638540 | 0.807935 | 3.963166e-50 | -8.615850e-47 |
| Msa0171980 | Msa0638540 | 0.804370 | 2.232013e-49 | -8.615850e-47 |
| Msa0172080 | Msa0638540 | 0.839167 | 1.862658e-57 | -8.615850e-47 |
| Msa0191440 | Msa0638540 | 0.810702 | 1.010596e-50 | -8.615850e-47 |
| Msa0201500 | Msa0638540 | 0.809229 | 2.098126e-50 | -8.615850e-47 |
| Msa0206010 | Msa0638540 | 0.806158 | 9.421630e-50 | -8.615850e-47 |
| Msa0218370 | Msa0638540 | 0.800914 | 1.152540e-48 | -8.615850e-47 |
| Msa0382370 | Msa0638540 | 0.814845 | 1.252115e-51 | -8.615850e-47 |
| Msa0390530 | Msa0638540 | 0.801641 | 8.179855e-49 | -8.615850e-47 |
| Msa0394120 | Msa0638540 | 0.815175 | 1.057487e-51 | -8.615850e-47 |
| Msa0403770 | Msa0638540 | 0.814923 | 1.203177e-51 | -8.615850e-47 |
| Msa0432160 | Msa0638540 | 0.814485 | 1.504557e-51 | -8.615850e-47 |
| Msa0476680 | Msa0638540 | 0.819011 | 1.452822e-52 | -8.615850e-47 |
| Msa0243090 | Msa0638540 | 0.852207 | 5.372738e-61 | -8.615850e-47 |
| Msa0257490 | Msa0638540 | 0.800668 | 1.293562e-48 | -8.615850e-47 |
| Msa0296790 | Msa0638540 | 0.803055 | 4.184302e-49 | -8.615850e-47 |
| Msa0309270 | Msa0638540 | 0.801353 | 9.372083e-49 | -8.615850e-47 |
| Msa0316920 | Msa0638540 | 0.808996 | 2.353185e-50 | -8.615850e-47 |
| Msa0319290 | Msa0638540 | 0.802210 | 6.251026e-49 | -8.615850e-47 |
| Msa0320430 | Msa0638540 | 0.820389 | 7.039447e-53 | -8.615850e-47 |
| Msa0321080 | Msa0638540 | 0.805525 | 1.280129e-49 | -8.615850e-47 |
| Msa0326110 | Msa0638540 | 0.804610 | 1.988567e-49 | -8.615850e-47 |
| Msa0347750 | Msa0638540 | 0.817568 | 3.083065e-52 | -8.615850e-47 |
| Msa0491000 | Msa0638540 | 0.808307 | 3.303068e-50 | -8.615850e-47 |
| Msa0510840 | Msa0638540 | 0.812778 | 3.572438e-51 | -8.615850e-47 |
| Msa0521010 | Msa0638540 | 0.816490 | 5.384925e-52 | -8.615850e-47 |
| Msa0534410 | Msa0638540 | 0.817595 | 3.039053e-52 | -8.615850e-47 |
| Msa0542560 | Msa0638540 | 0.803740 | 3.017635e-49 | -8.615850e-47 |
| Msa0547160 | Msa0638540 | 0.808054 | 3.739800e-50 | -8.615850e-47 |
| Msa0566750 | Msa0638540 | 0.801602 | 8.335179e-49 | -8.615850e-47 |
| Msa0587030 | Msa0638540 | 0.850135 | 2.065424e-60 | -8.615850e-47 |
| Msa0594560 | Msa0638540 | 0.805233 | 1.473352e-49 | -8.615850e-47 |
| Msa0600450 | Msa0638540 | 0.820647 | 6.141481e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638540 | MtrunA17_Chr4g0049861 | 97.561 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 0.0 | 838 |
| Msa0638540 | MtrunA17_Chr4g0049851 | 85.714 | 413 | 57 | 1 | 1 | 411 | 1 | 413 | 0.0 | 750 |
| Msa0638540 | MtrunA17_Chr2g0321561 | 28.364 | 275 | 177 | 6 | 123 | 389 | 30 | 292 | 4.55e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638540 | AT5G64370.1 | 80.637 | 408 | 73 | 1 | 4 | 411 | 6 | 407 | 0.0 | 685 |
| Msa0638540 | AT2G27450.1 | 28.986 | 276 | 174 | 8 | 123 | 389 | 31 | 293 | 5.47e-26 | 107 |
| Msa0638540 | AT2G27450.2 | 28.832 | 274 | 173 | 8 | 125 | 389 | 60 | 320 | 2.14e-25 | 105 |
| Msa0638540 | AT2G27450.3 | 30.303 | 231 | 132 | 5 | 171 | 389 | 1 | 214 | 1.17e-23 | 98.6 |
| Msa0638540 | AT5G12040.1 | 23.762 | 303 | 184 | 11 | 96 | 385 | 90 | 358 | 2.12e-11 | 65.5 |
Find 115 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAACACTGCCGTCGTAAT+TGG | 0.183164 | 4_3:-34042283 | Msa0638540:CDS |
| GAGAGAGCTGTAGCAGATTC+TGG | 0.218580 | 4_3:+34043345 | None:intergenic |
| CCAAAAGCTAGCCAATTTAA+AGG | 0.249204 | 4_3:+34042018 | None:intergenic |
| CCTTTAAATTGGCTAGCTTT+TGG | 0.257247 | 4_3:-34042018 | Msa0638540:CDS |
| GTAGGCACCATCCTTTAAAT+TGG | 0.259784 | 4_3:-34042029 | Msa0638540:CDS |
| GAAAGATAATACTAATAAAA+TGG | 0.259987 | 4_3:-34043856 | None:intergenic |
| ATGACTTGAGGCTCAAATTC+TGG | 0.264920 | 4_3:+34041426 | None:intergenic |
| CCAAATGCTGTTTCAAATAC+AGG | 0.269155 | 4_3:+34042078 | None:intergenic |
| TTGCCATCACCAGATGTAAA+TGG | 0.271319 | 4_3:+34041660 | None:intergenic |
| GGGAATCACGGCAATATAAT+TGG | 0.276293 | 4_3:-34042262 | Msa0638540:CDS |
| AAACCAGCACACGCAGATTT+TGG | 0.292452 | 4_3:-34041639 | Msa0638540:CDS |
| TTCACATCTCTCTCAAGAAT+TGG | 0.306659 | 4_3:+34042322 | None:intergenic |
| CACCATCTTTATCACGTAAC+AGG | 0.314327 | 4_3:-34041569 | Msa0638540:CDS |
| AGTCCCCAACTCTTGGAATA+TGG | 0.318877 | 4_3:+34042142 | None:intergenic |
| CCTGTATTTGAAACAGCATT+TGG | 0.321930 | 4_3:-34042078 | Msa0638540:CDS |
| GAAGTCAATCGTTTGCTTAC+CGG | 0.328217 | 4_3:-34043405 | Msa0638540:CDS |
| GAACCAGCAGCATCAATAAT+TGG | 0.344011 | 4_3:+34042595 | None:intergenic |
| CCCAACAACTGCTCACTTTG+TGG | 0.348484 | 4_3:-34042650 | Msa0638540:CDS |
| ATTGATGCTGCTGGTTCATC+GGG | 0.349034 | 4_3:-34042589 | Msa0638540:CDS |
| ATAAAACAACGAACCTCTAT+TGG | 0.350893 | 4_3:+34041928 | None:intergenic |
| TTGCTTCAATCAACCGGGTT+GGG | 0.362357 | 4_3:-34041701 | Msa0638540:CDS |
| CCTACCATAACATATATTAA+TGG | 0.364600 | 4_3:+34042047 | None:intergenic |
| CAATGAGAGCACATATTATA+TGG | 0.366751 | 4_3:-34042118 | Msa0638540:CDS |
| CTTAGTAGACCGCCAAGAAC+AGG | 0.368237 | 4_3:-34041260 | Msa0638540:three_prime_UTR |
| TCCAACGATGGTTCTATTTG+TGG | 0.375589 | 4_3:-34043701 | Msa0638540:CDS |
| ATTGCCATTAATATATGTTA+TGG | 0.379087 | 4_3:-34042051 | Msa0638540:CDS |
| TCACCAGATGTAAATGGATT+GGG | 0.386036 | 4_3:+34041666 | None:intergenic |
| TCTTAAACCGCATCATTTCC+AGG | 0.390604 | 4_3:-34043645 | Msa0638540:intron |
| TATTGATGCTGCTGGTTCAT+CGG | 0.405269 | 4_3:-34042590 | Msa0638540:CDS |
| ACTTTGTTGCTTCAATCAAC+CGG | 0.408788 | 4_3:-34041707 | Msa0638540:CDS |
| TCACATCTCTCTCAAGAATT+GGG | 0.410904 | 4_3:+34042323 | None:intergenic |
| TTAAGATCTCTTATGAAGTA+AGG | 0.417246 | 4_3:+34041395 | None:intergenic |
| CAGGCAATATAAAGACAAAT+GGG | 0.420095 | 4_3:-34041508 | Msa0638540:CDS |
| GCAGGCAATATAAAGACAAA+TGG | 0.433044 | 4_3:-34041509 | Msa0638540:CDS |
| AGAGAGCTGTAGCAGATTCT+GGG | 0.435033 | 4_3:+34043346 | None:intergenic |
| ACTCGTATCGTGCAGTCATT+CGG | 0.435404 | 4_3:+34041481 | None:intergenic |
| AAGTCAATCGTTTGCTTACC+GGG | 0.436307 | 4_3:-34043404 | Msa0638540:CDS |
| GGAACACTGCCGTCGTAATT+GGG | 0.441423 | 4_3:-34042282 | Msa0638540:CDS |
| TTCCCCAATCCATTTACATC+TGG | 0.449318 | 4_3:-34041669 | Msa0638540:CDS |
| TCATTGAAGTCCCCAACTCT+TGG | 0.451173 | 4_3:+34042135 | None:intergenic |
| AGAACCATATTCCAAGAGTT+GGG | 0.459086 | 4_3:-34042146 | Msa0638540:CDS |
| TATTATATGGAAGGAAATAC+TGG | 0.461685 | 4_3:-34042105 | Msa0638540:CDS |
| ATCACCAGATGTAAATGGAT+TGG | 0.462321 | 4_3:+34041665 | None:intergenic |
| AGTTCACCAACGGTGGCAGC+AGG | 0.464830 | 4_3:+34041967 | None:intergenic |
| TTTGTTGATTCTCCATCAGC+AGG | 0.469168 | 4_3:+34042391 | None:intergenic |
| CAGAACCATATTCCAAGAGT+TGG | 0.474049 | 4_3:-34042147 | Msa0638540:CDS |
| TCCACAAAGTGAGCAGTTGT+TGG | 0.476086 | 4_3:+34042649 | None:intergenic |
| TGAACCTATGTGGCCAATAG+AGG | 0.477225 | 4_3:-34041941 | Msa0638540:intron |
| GAACCTCGAGTTGTGAGGGT+TGG | 0.495984 | 4_3:-34042697 | Msa0638540:CDS |
| CAAATGCTGTTTCAAATACA+GGG | 0.500838 | 4_3:+34042079 | None:intergenic |
| GTTGCTTCAATCAACCGGGT+TGG | 0.501321 | 4_3:-34041702 | Msa0638540:CDS |
| GAGCCAATTATTGATGCTGC+TGG | 0.502901 | 4_3:-34042598 | Msa0638540:CDS |
| TTGCTTACCGGGCTTAATTG+TGG | 0.511919 | 4_3:-34043393 | Msa0638540:CDS |
| CCATTAATATATGTTATGGT+AGG | 0.513345 | 4_3:-34042047 | Msa0638540:CDS |
| CGAACCTCTATTGGCCACAT+AGG | 0.516696 | 4_3:+34041937 | None:intergenic |
| TCCCGTGTACAAAAGGCAAA+TGG | 0.518582 | 4_3:+34042439 | None:intergenic |
| ACATGGATCTTAACTTGTGC+AGG | 0.523148 | 4_3:-34041527 | Msa0638540:CDS |
| TAAGATCTCTTATGAAGTAA+GGG | 0.530932 | 4_3:+34041396 | None:intergenic |
| GATGGTGTGCAGGATGCATC+TGG | 0.531632 | 4_3:+34041585 | None:intergenic |
| TAATTTGATTGCAGGAAGCA+TGG | 0.533298 | 4_3:-34042468 | Msa0638540:intron |
| CTTTGTTGCTTCAATCAACC+GGG | 0.534469 | 4_3:-34041706 | Msa0638540:CDS |
| TATCCTTGAGAAGATGATGA+AGG | 0.543490 | 4_3:+34043669 | None:intergenic |
| TTCCCTTCATCATCTTCTCA+AGG | 0.544283 | 4_3:-34043672 | Msa0638540:CDS |
| AATCGCCACTCTTACGGAGA+TGG | 0.546075 | 4_3:-34043765 | Msa0638540:exon |
| TTCAACCCTGCTGCCACCGT+TGG | 0.546662 | 4_3:-34041973 | Msa0638540:CDS |
| GAGAGCACATATTATATGGA+AGG | 0.557147 | 4_3:-34042114 | Msa0638540:CDS |
| TGACCAAAATCTGCGTGTGC+TGG | 0.559199 | 4_3:+34041636 | None:intergenic |
| AAATAGAACCATCGTTGGAA+AGG | 0.568254 | 4_3:+34043705 | None:intergenic |
| TGAACCATGGAGAGGTTATG+TGG | 0.571388 | 4_3:-34042303 | Msa0638540:CDS |
| TCTTATGAAGTAAGGGGTCA+CGG | 0.579111 | 4_3:+34041403 | None:intergenic |
| AAGAGAACCTCGAGTTGTGA+GGG | 0.579546 | 4_3:-34042701 | Msa0638540:CDS |
| CCACAAAGTGAGCAGTTGTT+GGG | 0.579558 | 4_3:+34042650 | None:intergenic |
| TAATGAACACTTTCTAGCAC+AGG | 0.581116 | 4_3:+34041369 | None:intergenic |
| ATCTCCGTAAGAGTGGCGAT+TGG | 0.582302 | 4_3:+34043767 | None:intergenic |
| AAGCTAGCCAATTTAAAGGA+TGG | 0.586492 | 4_3:+34042022 | None:intergenic |
| CTTCTCCATCTCCGTAAGAG+TGG | 0.587608 | 4_3:+34043760 | None:intergenic |
| GCCACAAATAGAACCATCGT+TGG | 0.590523 | 4_3:+34043700 | None:intergenic |
| AATCCATTTACATCTGGTGA+TGG | 0.592464 | 4_3:-34041663 | Msa0638540:CDS |
| ATCCTTGAGAAGATGATGAA+GGG | 0.596320 | 4_3:+34043670 | None:intergenic |
| AAAGTGAGCAGTTGTTGGGA+TGG | 0.597586 | 4_3:+34042654 | None:intergenic |
| CAACTCAACCTTTCCAACGA+TGG | 0.598188 | 4_3:-34043713 | Msa0638540:CDS |
| TAAGAGAACCTCGAGTTGTG+AGG | 0.598332 | 4_3:-34042702 | Msa0638540:CDS |
| ACGTGATAAAGATGGTGTGC+AGG | 0.598654 | 4_3:+34041575 | None:intergenic |
| GAGATGGAGAAGTCTCAAAA+CGG | 0.600165 | 4_3:-34043749 | Msa0638540:CDS |
| TGATGCTGCTGGTTCATCGG+GGG | 0.604615 | 4_3:-34042587 | Msa0638540:CDS |
| GCCGTCGTAATTGGGAATCA+CGG | 0.610219 | 4_3:-34042274 | Msa0638540:CDS |
| TATAATTGGAATACACAGGA+AGG | 0.612226 | 4_3:-34042248 | Msa0638540:intron |
| CTTTGCAAAGAAGTATAACA+TGG | 0.612813 | 4_3:-34042356 | Msa0638540:CDS |
| CACCAGATGTAAATGGATTG+GGG | 0.615020 | 4_3:+34041667 | None:intergenic |
| TCTTTATCACGTAACAGGGA+TGG | 0.617255 | 4_3:-34041564 | Msa0638540:CDS |
| AAACCAACCCTCACAACTCG+AGG | 0.620062 | 4_3:+34042694 | None:intergenic |
| AAGGGGTCACGGATGACTTG+AGG | 0.621650 | 4_3:+34041414 | None:intergenic |
| TTAGTAGACCGCCAAGAACA+GGG | 0.623899 | 4_3:-34041259 | Msa0638540:three_prime_UTR |
| GCAATATAATTGGAATACAC+AGG | 0.623995 | 4_3:-34042252 | Msa0638540:CDS |
| TTTGTACACGGGAGAAAAGG+TGG | 0.624689 | 4_3:-34042429 | Msa0638540:CDS |
| GGAATGTCTCAGTCCCAACC+CGG | 0.625592 | 4_3:+34041688 | None:intergenic |
| GAATTTGCAGAACCTGCTGA+TGG | 0.628090 | 4_3:-34042403 | Msa0638540:CDS |
| AAGATCTCTTATGAAGTAAG+GGG | 0.629006 | 4_3:+34041397 | None:intergenic |
| ACAGCTCTCTCTGTCAAACA+TGG | 0.630470 | 4_3:-34043333 | Msa0638540:CDS |
| TGTTCCACATAACCTCTCCA+TGG | 0.634118 | 4_3:+34042299 | None:intergenic |
| GAACCATATTCCAAGAGTTG+GGG | 0.634849 | 4_3:-34042145 | Msa0638540:CDS |
| CTTGAGAGAGATGTGAACCA+TGG | 0.640207 | 4_3:-34042316 | Msa0638540:CDS |
| TTGATGCTGCTGGTTCATCG+GGG | 0.643399 | 4_3:-34042588 | Msa0638540:CDS |
| TGGCTTATTAGTAACAGACA+TGG | 0.657372 | 4_3:-34041544 | Msa0638540:CDS |
| TGCACGATACGAGTTGTATG+CGG | 0.660405 | 4_3:-34041472 | Msa0638540:CDS |
| GTTCACCAACGGTGGCAGCA+GGG | 0.664314 | 4_3:+34041968 | None:intergenic |
| TCCCTGTTACGTGATAAAGA+TGG | 0.671678 | 4_3:+34041567 | None:intergenic |
| GCCGTGATTCCCAATTACGA+CGG | 0.672036 | 4_3:+34042273 | None:intergenic |
| AGGTTCACTGAGTTCACCAA+CGG | 0.675482 | 4_3:+34041957 | None:intergenic |
| ACCATCTTTATCACGTAACA+GGG | 0.675551 | 4_3:-34041568 | Msa0638540:CDS |
| AGAATGACCTGGAAATGATG+CGG | 0.682019 | 4_3:+34043638 | None:intergenic |
| TTCACTGAGTTCACCAACGG+TGG | 0.688022 | 4_3:+34041960 | None:intergenic |
| AGGCAATATAAAGACAAATG+GGG | 0.695987 | 4_3:-34041507 | Msa0638540:CDS |
| GAGAGATGTGAACCATGGAG+AGG | 0.699125 | 4_3:-34042311 | Msa0638540:CDS |
| GTGAACTCAGTGAACCTATG+TGG | 0.733745 | 4_3:-34041951 | Msa0638540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAATAATGATAATAAT+TGG | + | chr4_3:34041430-34041449 | None:intergenic | 10.0% |
| !! | ATTATATTATTCAATCTTCA+TGG | - | chr4_3:34041541-34041560 | Msa0638540:CDS | 15.0% |
| !! | TATATAAAAATAAACACTGT+AGG | + | chr4_3:34042547-34042566 | None:intergenic | 15.0% |
| !!! | TTTTTATATAATTTGATTGC+AGG | - | chr4_3:34042557-34042576 | Msa0638540:intron | 15.0% |
| !! | CATTATTACTATATCAGTAT+CGG | - | chr4_3:34041438-34041457 | Msa0638540:CDS | 20.0% |
| !!! | CTTATTTCTTATTTAAGCTA+TGG | - | chr4_3:34042238-34042257 | Msa0638540:intron | 20.0% |
| !! | ATTGCCATTAATATATGTTA+TGG | - | chr4_3:34042982-34043001 | Msa0638540:intron | 20.0% |
| !! | TTGACTAAACAATAGAAAAT+TGG | - | chr4_3:34043238-34043257 | Msa0638540:intron | 20.0% |
| !!! | CAAATGAAGTTTTCAATATT+CGG | - | chr4_3:34043748-34043767 | Msa0638540:CDS | 20.0% |
| !!! | TAATTGAACTAGCTTATTTT+AGG | + | chr4_3:34043820-34043839 | None:intergenic | 20.0% |
| ! | TAAATAACATAACATGATCC+AGG | + | chr4_3:34041494-34041513 | None:intergenic | 25.0% |
| ! | TTGTTTCCAACAATGTTTAA+CGG | - | chr4_3:34041951-34041970 | Msa0638540:CDS | 25.0% |
| !! | AATCTTTCCTTTTTCTTGTA+TGG | - | chr4_3:34042128-34042147 | Msa0638540:CDS | 25.0% |
| !!! | ATTTTAAGTTTACTTGTCTC+AGG | - | chr4_3:34042278-34042297 | Msa0638540:CDS | 25.0% |
| ! | TCTAATGAACACAAAACATT+TGG | - | chr4_3:34042863-34042882 | Msa0638540:intron | 25.0% |
| ! | TATTATATGGAAGGAAATAC+TGG | - | chr4_3:34042928-34042947 | Msa0638540:intron | 25.0% |
| ! | CCTACCATAACATATATTAA+TGG | + | chr4_3:34042989-34043008 | None:intergenic | 25.0% |
| ! | CCATTAATATATGTTATGGT+AGG | - | chr4_3:34042986-34043005 | Msa0638540:intron | 25.0% |
| !! | TTGTTTAGTCAATTTTCTGT+AGG | + | chr4_3:34043230-34043249 | None:intergenic | 25.0% |
| ! | AGAAAATTGGCATGATTATA+TGG | - | chr4_3:34043251-34043270 | Msa0638540:intron | 25.0% |
| !!! | TATAGGTGTTATTGTTTTTC+AGG | - | chr4_3:34043276-34043295 | Msa0638540:intron | 25.0% |
| ! | TAAGATCTCTTATGAAGTAA+GGG | + | chr4_3:34043640-34043659 | None:intergenic | 25.0% |
| ! | TTAAGATCTCTTATGAAGTA+AGG | + | chr4_3:34043641-34043660 | None:intergenic | 25.0% |
| ! | ATATATGACTTTGACTTTCC+TGG | - | chr4_3:34041473-34041492 | Msa0638540:CDS | 30.0% |
| AGTGAATTGTATTCATACCT+GGG | + | chr4_3:34041734-34041753 | None:intergenic | 30.0% | |
| AAGTGAATTGTATTCATACC+TGG | + | chr4_3:34041735-34041754 | None:intergenic | 30.0% | |
| TTTCACTTCCTGTTAAACAT+TGG | + | chr4_3:34041909-34041928 | None:intergenic | 30.0% | |
| TAACAGGAAGTGAAATTACT+TGG | - | chr4_3:34041914-34041933 | Msa0638540:intron | 30.0% | |
| TGTTTCCAACAATGTTTAAC+GGG | - | chr4_3:34041952-34041971 | Msa0638540:CDS | 30.0% | |
| CGATCATTCAATCCATATTT+CGG | + | chr4_3:34042023-34042042 | None:intergenic | 30.0% | |
| ! | TTTTTCACTCTTTCCTAACT+AGG | - | chr4_3:34042097-34042116 | Msa0638540:CDS | 30.0% |
| ! | TTTTCACTCTTTCCTAACTA+GGG | - | chr4_3:34042098-34042117 | Msa0638540:CDS | 30.0% |
| ACAACAACCATACAAGAAAA+AGG | + | chr4_3:34042138-34042157 | None:intergenic | 30.0% | |
| GTTGTCTATCAAATTATCGT+CGG | - | chr4_3:34042153-34042172 | Msa0638540:intron | 30.0% | |
| AGAAATAAGTTTCAATGCAG+AGG | + | chr4_3:34042227-34042246 | None:intergenic | 30.0% | |
| ATTTAAGCTATGGTATTCGT+TGG | - | chr4_3:34042248-34042267 | Msa0638540:intron | 30.0% | |
| !!! | TCTCAAAAAGTGCCTTTTTT+TGG | + | chr4_3:34042410-34042429 | None:intergenic | 30.0% |
| AATAAACACTGTAGGATTTC+TGG | + | chr4_3:34042539-34042558 | None:intergenic | 30.0% | |
| ! | CTTTGCAAAGAAGTATAACA+TGG | - | chr4_3:34042677-34042696 | Msa0638540:CDS | 30.0% |
| GCAATATAATTGGAATACAC+AGG | - | chr4_3:34042781-34042800 | Msa0638540:intron | 30.0% | |
| TATAATTGGAATACACAGGA+AGG | - | chr4_3:34042785-34042804 | Msa0638540:intron | 30.0% | |
| TTCATTAGATAGCTGAAAGA+CGG | + | chr4_3:34042852-34042871 | None:intergenic | 30.0% | |
| ! | CAATGAGAGCACATATTATA+TGG | - | chr4_3:34042915-34042934 | Msa0638540:intron | 30.0% |
| !! | CAAATGCTGTTTCAAATACA+GGG | + | chr4_3:34042957-34042976 | None:intergenic | 30.0% |
| ATAAAACAACGAACCTCTAT+TGG | + | chr4_3:34043108-34043127 | None:intergenic | 30.0% | |
| !! | GGTTCGTTGTTTTATATTGA+TGG | - | chr4_3:34043113-34043132 | Msa0638540:intron | 30.0% |
| AGAAACAATAATCAGCAGAA+AGG | + | chr4_3:34043154-34043173 | None:intergenic | 30.0% | |
| !!! | GCAGATTTTGGTCATTTTTA+TGG | - | chr4_3:34043406-34043425 | Msa0638540:CDS | 30.0% |
| CAGGCAATATAAAGACAAAT+GGG | - | chr4_3:34043525-34043544 | Msa0638540:intron | 30.0% | |
| AGGCAATATAAAGACAAATG+GGG | - | chr4_3:34043526-34043545 | Msa0638540:intron | 30.0% | |
| AAGATCTCTTATGAAGTAAG+GGG | + | chr4_3:34043639-34043658 | None:intergenic | 30.0% | |
| ! | TTTTCAAACTGTTTTCTGTG+TGG | - | chr4_3:34043692-34043711 | Msa0638540:CDS | 30.0% |
| !!! | GAACTAGCTTATTTTAGGAA+AGG | + | chr4_3:34043815-34043834 | None:intergenic | 30.0% |
| ACTCATCATCATCATCATCA+CGG | - | chr4_3:34041229-34041248 | Msa0638540:three_prime_UTR | 35.0% | |
| AAATAGAACCATCGTTGGAA+AGG | + | chr4_3:34041331-34041350 | None:intergenic | 35.0% | |
| ATCCTTGAGAAGATGATGAA+GGG | + | chr4_3:34041366-34041385 | None:intergenic | 35.0% | |
| TATCCTTGAGAAGATGATGA+AGG | + | chr4_3:34041367-34041386 | None:intergenic | 35.0% | |
| ! | AATCTTCATGGAAAGTGCAT+TGG | - | chr4_3:34041553-34041572 | Msa0638540:CDS | 35.0% |
| !!! | TGCTGTTGCTTTTTAAGTCA+TGG | - | chr4_3:34041818-34041837 | Msa0638540:intron | 35.0% |
| TGTTTCCACCAATGTTTAAC+AGG | - | chr4_3:34041898-34041917 | Msa0638540:intron | 35.0% | |
| TTTCACTCTTTCCTAACTAG+GGG | - | chr4_3:34042099-34042118 | Msa0638540:CDS | 35.0% | |
| AGATTAATTGTCCCCTAGTT+AGG | + | chr4_3:34042113-34042132 | None:intergenic | 35.0% | |
| TCACTTTGTGGACCAAAAAA+AGG | - | chr4_3:34042395-34042414 | Msa0638540:CDS | 35.0% | |
| AACATACTATGCTTGCAAGT+AGG | - | chr4_3:34042471-34042490 | Msa0638540:intron | 35.0% | |
| TAATTTGATTGCAGGAAGCA+TGG | - | chr4_3:34042565-34042584 | Msa0638540:intron | 35.0% | |
| TCACATCTCTCTCAAGAATT+GGG | + | chr4_3:34042713-34042732 | None:intergenic | 35.0% | |
| TTCACATCTCTCTCAAGAAT+TGG | + | chr4_3:34042714-34042733 | None:intergenic | 35.0% | |
| GAAGCAGAAGTAGAAAGTTT+AGG | + | chr4_3:34042818-34042837 | None:intergenic | 35.0% | |
| CTTTCTACTTCTGCTTCTAA+TGG | - | chr4_3:34042821-34042840 | Msa0638540:intron | 35.0% | |
| TCATTAGATAGCTGAAAGAC+GGG | + | chr4_3:34042851-34042870 | None:intergenic | 35.0% | |
| AGAACCATATTCCAAGAGTT+GGG | - | chr4_3:34042887-34042906 | Msa0638540:intron | 35.0% | |
| ! | GAGAGCACATATTATATGGA+AGG | - | chr4_3:34042919-34042938 | Msa0638540:intron | 35.0% |
| !! | CCAAATGCTGTTTCAAATAC+AGG | + | chr4_3:34042958-34042977 | None:intergenic | 35.0% |
| ! | CCTGTATTTGAAACAGCATT+TGG | - | chr4_3:34042955-34042974 | Msa0638540:intron | 35.0% |
| AAGCTAGCCAATTTAAAGGA+TGG | + | chr4_3:34043014-34043033 | None:intergenic | 35.0% | |
| CCAAAAGCTAGCCAATTTAA+AGG | + | chr4_3:34043018-34043037 | None:intergenic | 35.0% | |
| !!! | CCTTTAAATTGGCTAGCTTT+TGG | - | chr4_3:34043015-34043034 | Msa0638540:intron | 35.0% |
| GGCATGATTATATGGCTTAT+AGG | - | chr4_3:34043259-34043278 | Msa0638540:intron | 35.0% | |
| ! | ACTTTGTTGCTTCAATCAAC+CGG | - | chr4_3:34043326-34043345 | Msa0638540:CDS | 35.0% |
| ! | TCACCAGATGTAAATGGATT+GGG | + | chr4_3:34043370-34043389 | None:intergenic | 35.0% |
| ATCACCAGATGTAAATGGAT+TGG | + | chr4_3:34043371-34043390 | None:intergenic | 35.0% | |
| AATCCATTTACATCTGGTGA+TGG | - | chr4_3:34043370-34043389 | Msa0638540:CDS | 35.0% | |
| ACCATCTTTATCACGTAACA+GGG | - | chr4_3:34043465-34043484 | Msa0638540:intron | 35.0% | |
| TGGCTTATTAGTAACAGACA+TGG | - | chr4_3:34043489-34043508 | Msa0638540:intron | 35.0% | |
| GCAGGCAATATAAAGACAAA+TGG | - | chr4_3:34043524-34043543 | Msa0638540:intron | 35.0% | |
| ! | TAATGAACACTTTCTAGCAC+AGG | + | chr4_3:34043667-34043686 | None:intergenic | 35.0% |
| ! | AAAGTGATTTTCCCTGTTCT+TGG | + | chr4_3:34043788-34043807 | None:intergenic | 35.0% |
| ! | TTTTCCAATCGCCACTCTTA+CGG | - | chr4_3:34041262-34041281 | Msa0638540:three_prime_UTR | 40.0% |
| GAGATGGAGAAGTCTCAAAA+CGG | - | chr4_3:34041284-34041303 | Msa0638540:intron | 40.0% | |
| ! | TCCAACGATGGTTCTATTTG+TGG | - | chr4_3:34041332-34041351 | Msa0638540:three_prime_UTR | 40.0% |
| TTCCCTTCATCATCTTCTCA+AGG | - | chr4_3:34041361-34041380 | Msa0638540:three_prime_UTR | 40.0% | |
| TCTTAAACCGCATCATTTCC+AGG | - | chr4_3:34041388-34041407 | Msa0638540:exon | 40.0% | |
| AGAATGACCTGGAAATGATG+CGG | + | chr4_3:34041398-34041417 | None:intergenic | 40.0% | |
| GAAGTCAATCGTTTGCTTAC+CGG | - | chr4_3:34041628-34041647 | Msa0638540:CDS | 40.0% | |
| AAGTCAATCGTTTGCTTACC+GGG | - | chr4_3:34041629-34041648 | Msa0638540:CDS | 40.0% | |
| ! | CACTTTTCCACAATTAAGCC+CGG | + | chr4_3:34041650-34041669 | None:intergenic | 40.0% |
| CACTTCCTGTTAAACATTGG+TGG | + | chr4_3:34041906-34041925 | None:intergenic | 40.0% | |
| CACTTCCCGTTAAACATTGT+TGG | + | chr4_3:34041960-34041979 | None:intergenic | 40.0% | |
| !! | CTTGGATTGGTTAAACGAGA+TGG | - | chr4_3:34042186-34042205 | Msa0638540:intron | 40.0% |
| GAACCAGCAGCATCAATAAT+TGG | + | chr4_3:34042441-34042460 | None:intergenic | 40.0% | |
| !! | TATTGATGCTGCTGGTTCAT+CGG | - | chr4_3:34042443-34042462 | Msa0638540:CDS | 40.0% |
| !! | TGCCATTTGCCTTTTGTACA+CGG | - | chr4_3:34042592-34042611 | Msa0638540:CDS | 40.0% |
| !! | TTTGTTGATTCTCCATCAGC+AGG | + | chr4_3:34042645-34042664 | None:intergenic | 40.0% |
| GGGAATCACGGCAATATAAT+TGG | - | chr4_3:34042771-34042790 | Msa0638540:intron | 40.0% | |
| CAGAACCATATTCCAAGAGT+TGG | - | chr4_3:34042886-34042905 | Msa0638540:intron | 40.0% | |
| GAACCATATTCCAAGAGTTG+GGG | - | chr4_3:34042888-34042907 | Msa0638540:intron | 40.0% | |
| GTAGGCACCATCCTTTAAAT+TGG | - | chr4_3:34043004-34043023 | Msa0638540:intron | 40.0% | |
| !!! | TGGCTAGCTTTTGGCTTAAA+TGG | - | chr4_3:34043024-34043043 | Msa0638540:intron | 40.0% |
| !!! | AGCTTTTGGCTTAAATGGTG+CGG | - | chr4_3:34043029-34043048 | Msa0638540:intron | 40.0% |
| ! | CTTTGTTGCTTCAATCAACC+GGG | - | chr4_3:34043327-34043346 | Msa0638540:CDS | 40.0% |
| TTCCCCAATCCATTTACATC+TGG | - | chr4_3:34043364-34043383 | Msa0638540:CDS | 40.0% | |
| !! | CACCAGATGTAAATGGATTG+GGG | + | chr4_3:34043369-34043388 | None:intergenic | 40.0% |
| TTGCCATCACCAGATGTAAA+TGG | + | chr4_3:34043376-34043395 | None:intergenic | 40.0% | |
| CACCATCTTTATCACGTAAC+AGG | - | chr4_3:34043464-34043483 | Msa0638540:intron | 40.0% | |
| TCCCTGTTACGTGATAAAGA+TGG | + | chr4_3:34043469-34043488 | None:intergenic | 40.0% | |
| TCTTTATCACGTAACAGGGA+TGG | - | chr4_3:34043469-34043488 | Msa0638540:intron | 40.0% | |
| !! | ACATGGATCTTAACTTGTGC+AGG | - | chr4_3:34043506-34043525 | Msa0638540:intron | 40.0% |
| ATGACTTGAGGCTCAAATTC+TGG | + | chr4_3:34043610-34043629 | None:intergenic | 40.0% | |
| TCTTATGAAGTAAGGGGTCA+CGG | + | chr4_3:34043633-34043652 | None:intergenic | 40.0% | |
| CAACTCAACCTTTCCAACGA+TGG | - | chr4_3:34041320-34041339 | Msa0638540:intron | 45.0% | |
| GCCACAAATAGAACCATCGT+TGG | + | chr4_3:34041336-34041355 | None:intergenic | 45.0% | |
| GGTCTGAAAGAAGAATGACC+TGG | + | chr4_3:34041409-34041428 | None:intergenic | 45.0% | |
| ! | CTATGTGAGTATCGTGTTGC+AGG | - | chr4_3:34041606-34041625 | Msa0638540:CDS | 45.0% |
| TTGCTTACCGGGCTTAATTG+TGG | - | chr4_3:34041640-34041659 | Msa0638540:CDS | 45.0% | |
| AGAGAGCTGTAGCAGATTCT+GGG | + | chr4_3:34041690-34041709 | None:intergenic | 45.0% | |
| ACAGCTCTCTCTGTCAAACA+TGG | - | chr4_3:34041700-34041719 | Msa0638540:CDS | 45.0% | |
| !!! | CAAACATGGTTTTGATGCCC+AGG | - | chr4_3:34041714-34041733 | Msa0638540:CDS | 45.0% |
| CCAACTCAAAAGAGAGGGTT+CGG | + | chr4_3:34041995-34042014 | None:intergenic | 45.0% | |
| TCCTGCCAACTCAAAAGAGA+GGG | + | chr4_3:34042000-34042019 | None:intergenic | 45.0% | |
| ATCGTCGGAATCTATGAGCT+TGG | - | chr4_3:34042168-34042187 | Msa0638540:intron | 45.0% | |
| CGGAATCTATGAGCTTGGAT+TGG | - | chr4_3:34042173-34042192 | Msa0638540:intron | 45.0% | |
| ! | TAAGAGAACCTCGAGTTGTG+AGG | - | chr4_3:34042331-34042350 | Msa0638540:CDS | 45.0% |
| ! | AAGAGAACCTCGAGTTGTGA+GGG | - | chr4_3:34042332-34042351 | Msa0638540:CDS | 45.0% |
| AAAGTGAGCAGTTGTTGGGA+TGG | + | chr4_3:34042382-34042401 | None:intergenic | 45.0% | |
| CCACAAAGTGAGCAGTTGTT+GGG | + | chr4_3:34042386-34042405 | None:intergenic | 45.0% | |
| TCCACAAAGTGAGCAGTTGT+TGG | + | chr4_3:34042387-34042406 | None:intergenic | 45.0% | |
| GAGCCAATTATTGATGCTGC+TGG | - | chr4_3:34042435-34042454 | Msa0638540:CDS | 45.0% | |
| !! | ATTGATGCTGCTGGTTCATC+GGG | - | chr4_3:34042444-34042463 | Msa0638540:CDS | 45.0% |
| ! | GCCATTTGCCTTTTGTACAC+GGG | - | chr4_3:34042593-34042612 | Msa0638540:CDS | 45.0% |
| TCCCGTGTACAAAAGGCAAA+TGG | + | chr4_3:34042597-34042616 | None:intergenic | 45.0% | |
| ! | CCTTTTCTCCCGTGTACAAA+AGG | + | chr4_3:34042604-34042623 | None:intergenic | 45.0% |
| ! | CCTTTTGTACACGGGAGAAA+AGG | - | chr4_3:34042601-34042620 | Msa0638540:CDS | 45.0% |
| TTTGTACACGGGAGAAAAGG+TGG | - | chr4_3:34042604-34042623 | Msa0638540:CDS | 45.0% | |
| GAATTTGCAGAACCTGCTGA+TGG | - | chr4_3:34042630-34042649 | Msa0638540:CDS | 45.0% | |
| CTTGAGAGAGATGTGAACCA+TGG | - | chr4_3:34042717-34042736 | Msa0638540:CDS | 45.0% | |
| TGAACCATGGAGAGGTTATG+TGG | - | chr4_3:34042730-34042749 | Msa0638540:CDS | 45.0% | |
| TGTTCCACATAACCTCTCCA+TGG | + | chr4_3:34042737-34042756 | None:intergenic | 45.0% | |
| AGTCCCCAACTCTTGGAATA+TGG | + | chr4_3:34042894-34042913 | None:intergenic | 45.0% | |
| TCATTGAAGTCCCCAACTCT+TGG | + | chr4_3:34042901-34042920 | None:intergenic | 45.0% | |
| AGGTTCACTGAGTTCACCAA+CGG | + | chr4_3:34043079-34043098 | None:intergenic | 45.0% | |
| GTGAACTCAGTGAACCTATG+TGG | - | chr4_3:34043082-34043101 | Msa0638540:intron | 45.0% | |
| TGAACCTATGTGGCCAATAG+AGG | - | chr4_3:34043092-34043111 | Msa0638540:intron | 45.0% | |
| TTGCTTCAATCAACCGGGTT+GGG | - | chr4_3:34043332-34043351 | Msa0638540:CDS | 45.0% | |
| ! | AAACCAGCACACGCAGATTT+TGG | - | chr4_3:34043394-34043413 | Msa0638540:CDS | 45.0% |
| ACGTGATAAAGATGGTGTGC+AGG | + | chr4_3:34043461-34043480 | None:intergenic | 45.0% | |
| ACTCGTATCGTGCAGTCATT+CGG | + | chr4_3:34043555-34043574 | None:intergenic | 45.0% | |
| TGCACGATACGAGTTGTATG+CGG | - | chr4_3:34043561-34043580 | Msa0638540:intron | 45.0% | |
| TTAGTAGACCGCCAAGAACA+GGG | - | chr4_3:34043774-34043793 | Msa0638540:five_prime_UTR | 45.0% | |
| ! | GTGATTTTCCCTGTTCTTGG+CGG | + | chr4_3:34043785-34043804 | None:intergenic | 45.0% |
| ATCTCCGTAAGAGTGGCGAT+TGG | + | chr4_3:34041269-34041288 | None:intergenic | 50.0% | |
| AATCGCCACTCTTACGGAGA+TGG | - | chr4_3:34041268-34041287 | Msa0638540:three_prime_UTR | 50.0% | |
| CTTCTCCATCTCCGTAAGAG+TGG | + | chr4_3:34041276-34041295 | None:intergenic | 50.0% | |
| GAGAGAGCTGTAGCAGATTC+TGG | + | chr4_3:34041691-34041710 | None:intergenic | 50.0% | |
| !! | CCGAACCCTCTCTTTTGAGT+TGG | - | chr4_3:34041992-34042011 | Msa0638540:CDS | 50.0% |
| !!! | ACCCTCTCTTTTGAGTTGGC+AGG | - | chr4_3:34041996-34042015 | Msa0638540:CDS | 50.0% |
| GTCCTGCCAACTCAAAAGAG+AGG | + | chr4_3:34042001-34042020 | None:intergenic | 50.0% | |
| GAGTTGGCAGGACCGAAATA+TGG | - | chr4_3:34042008-34042027 | Msa0638540:CDS | 50.0% | |
| AAACCAACCCTCACAACTCG+AGG | + | chr4_3:34042342-34042361 | None:intergenic | 50.0% | |
| CCCAACAACTGCTCACTTTG+TGG | - | chr4_3:34042383-34042402 | Msa0638540:CDS | 50.0% | |
| !! | TTGATGCTGCTGGTTCATCG+GGG | - | chr4_3:34042445-34042464 | Msa0638540:CDS | 50.0% |
| GAGAGATGTGAACCATGGAG+AGG | - | chr4_3:34042722-34042741 | Msa0638540:CDS | 50.0% | |
| TGGAACACTGCCGTCGTAAT+TGG | - | chr4_3:34042750-34042769 | Msa0638540:intron | 50.0% | |
| GGAACACTGCCGTCGTAATT+GGG | - | chr4_3:34042751-34042770 | Msa0638540:intron | 50.0% | |
| GCCGTCGTAATTGGGAATCA+CGG | - | chr4_3:34042759-34042778 | Msa0638540:intron | 50.0% | |
| GCCGTGATTCCCAATTACGA+CGG | + | chr4_3:34042763-34042782 | None:intergenic | 50.0% | |
| TTCACTGAGTTCACCAACGG+TGG | + | chr4_3:34043076-34043095 | None:intergenic | 50.0% | |
| CGAACCTCTATTGGCCACAT+AGG | + | chr4_3:34043099-34043118 | None:intergenic | 50.0% | |
| GTTGCTTCAATCAACCGGGT+TGG | - | chr4_3:34043331-34043350 | Msa0638540:CDS | 50.0% | |
| TGACCAAAATCTGCGTGTGC+TGG | + | chr4_3:34043400-34043419 | None:intergenic | 50.0% | |
| CTTAGTAGACCGCCAAGAAC+AGG | - | chr4_3:34043773-34043792 | Msa0638540:five_prime_UTR | 50.0% | |
| ! | GAACCTCGAGTTGTGAGGGT+TGG | - | chr4_3:34042336-34042355 | Msa0638540:CDS | 55.0% |
| !! | TGATGCTGCTGGTTCATCGG+GGG | - | chr4_3:34042446-34042465 | Msa0638540:CDS | 55.0% |
| GGAATGTCTCAGTCCCAACC+CGG | + | chr4_3:34043348-34043367 | None:intergenic | 55.0% | |
| GATGGTGTGCAGGATGCATC+TGG | + | chr4_3:34043451-34043470 | None:intergenic | 55.0% | |
| AAGGGGTCACGGATGACTTG+AGG | + | chr4_3:34043622-34043641 | None:intergenic | 55.0% | |
| TTCAACCCTGCTGCCACCGT+TGG | - | chr4_3:34043060-34043079 | Msa0638540:intron | 60.0% | |
| GTTCACCAACGGTGGCAGCA+GGG | + | chr4_3:34043068-34043087 | None:intergenic | 60.0% | |
| AGTTCACCAACGGTGGCAGC+AGG | + | chr4_3:34043069-34043088 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34041185 | 34043870 | 34041185 | ID=Msa0638540;Name=Msa0638540 |
| chr4_3 | mRNA | 34041185 | 34043870 | 34041185 | ID=Msa0638540-mRNA-1;Parent=Msa0638540;Name=Msa0638540-mRNA-1;_AED=0.32;_eAED=0.32;_QI=102|1|1|1|0.83|0.71|7|184|411 |
| chr4_3 | exon | 34041185 | 34041298 | 34041185 | ID=Msa0638540-mRNA-1:exon:7781;Parent=Msa0638540-mRNA-1 |
| chr4_3 | exon | 34041325 | 34041757 | 34041325 | ID=Msa0638540-mRNA-1:exon:7780;Parent=Msa0638540-mRNA-1 |
| chr4_3 | exon | 34041942 | 34042166 | 34041942 | ID=Msa0638540-mRNA-1:exon:7779;Parent=Msa0638540-mRNA-1 |
| chr4_3 | exon | 34042249 | 34042476 | 34042249 | ID=Msa0638540-mRNA-1:exon:7778;Parent=Msa0638540-mRNA-1 |
| chr4_3 | exon | 34042567 | 34042755 | 34042567 | ID=Msa0638540-mRNA-1:exon:7777;Parent=Msa0638540-mRNA-1 |
| chr4_3 | exon | 34043320 | 34043427 | 34043320 | ID=Msa0638540-mRNA-1:exon:7776;Parent=Msa0638540-mRNA-1 |
| chr4_3 | exon | 34043646 | 34043870 | 34043646 | ID=Msa0638540-mRNA-1:exon:7775;Parent=Msa0638540-mRNA-1 |
| chr4_3 | five_prime_UTR | 34043769 | 34043870 | 34043769 | ID=Msa0638540-mRNA-1:five_prime_utr;Parent=Msa0638540-mRNA-1 |
| chr4_3 | CDS | 34043646 | 34043768 | 34043646 | ID=Msa0638540-mRNA-1:cds;Parent=Msa0638540-mRNA-1 |
| chr4_3 | CDS | 34043320 | 34043427 | 34043320 | ID=Msa0638540-mRNA-1:cds;Parent=Msa0638540-mRNA-1 |
| chr4_3 | CDS | 34042567 | 34042755 | 34042567 | ID=Msa0638540-mRNA-1:cds;Parent=Msa0638540-mRNA-1 |
| chr4_3 | CDS | 34042249 | 34042476 | 34042249 | ID=Msa0638540-mRNA-1:cds;Parent=Msa0638540-mRNA-1 |
| chr4_3 | CDS | 34041942 | 34042166 | 34041942 | ID=Msa0638540-mRNA-1:cds;Parent=Msa0638540-mRNA-1 |
| chr4_3 | CDS | 34041395 | 34041757 | 34041395 | ID=Msa0638540-mRNA-1:cds;Parent=Msa0638540-mRNA-1 |
| chr4_3 | three_prime_UTR | 34041325 | 34041394 | 34041325 | ID=Msa0638540-mRNA-1:three_prime_utr;Parent=Msa0638540-mRNA-1 |
| chr4_3 | three_prime_UTR | 34041185 | 34041298 | 34041185 | ID=Msa0638540-mRNA-1:three_prime_utr;Parent=Msa0638540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
