AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030780 MtrunA17_Chr1g0188421 92.979 584 22 1 143 726 1 565 0.0 1115
Msa0030780 MtrunA17_Chr4g0017901 48.189 718 331 11 2 706 1 690 0.0 663
Msa0030780 MtrunA17_Chr5g0434341 29.474 760 365 20 13 691 35 704 3.46e-88 292
Msa0030780 MtrunA17_Chr1g0188411 99.115 113 1 0 1 113 1 113 7.68e-74 234
Msa0030780 MtrunA17_Chr5g0417171 28.166 458 291 14 259 688 1 448 3.30e-50 182
Msa0030780 MtrunA17_Chr5g0417181 57.407 54 22 1 195 248 11 63 8.71e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030780 AT1G33420.1 48.476 722 311 19 2 712 3 674 0.0 651
Msa0030780 AT1G33420.2 48.764 607 255 15 113 712 12 569 0.0 552
Msa0030780 AT5G22260.1 29.403 636 373 17 86 693 78 665 1.72e-82 276
Msa0030780 AT1G66170.1 31.700 653 329 19 83 686 69 653 8.90e-81 272
Msa0030780 AT2G01810.1 26.880 718 381 23 39 686 39 682 1.31e-68 239
Msa0030780 AT2G07714.1 34.746 118 74 1 233 347 1 118 1.55e-20 90.5
Msa0030780 ATMG00550.1 31.522 92 60 1 259 347 1 92 9.21e-12 64.3

Find 251 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCTTGTTCATATTTC+AGG 0.121731 1_1:+57259160 Msa0030780:three_prime_UTR
AATTATTTCTGGTGGAATTT+TGG 0.142354 1_1:-57258540 None:intergenic
CTAATTTGCCTTGCCATTTA+TGG 0.151482 1_1:+57253312 Msa0030780:five_prime_UTR
TAGACCGGGCTTCTTTATTT+TGG 0.164988 1_1:-57253292 None:intergenic
GTTGCCATATTATGGATTTC+TGG 0.176048 1_1:+57256295 Msa0030780:CDS
TCTTTCTGGTTGCCATATTA+TGG 0.177159 1_1:+57256287 Msa0030780:CDS
AGAGTGCTGCGGGCAGTGTC+TGG 0.207906 1_1:+57257195 Msa0030780:CDS
GTGAGTGAGGCTTCTGTTCC+TGG 0.237167 1_1:-57256954 None:intergenic
GGTGAGTGGGGATATAATTT+TGG 0.242939 1_1:+57256847 Msa0030780:CDS
ACCTCACGCGCCACCAAAAC+TGG 0.247755 1_1:+57253610 Msa0030780:five_prime_UTR
AATGCCTATCTGTTATTTAC+AGG 0.248478 1_1:-57259126 None:intergenic
TGTTATTTACAGGCTATTTC+AGG 0.254200 1_1:-57259116 None:intergenic
TGATTATTGCCTTTCTGAAC+TGG 0.256477 1_1:+57257284 Msa0030780:CDS
CATCAGCTTTGATTATAAAA+TGG 0.259538 1_1:-57255233 None:intergenic
GGGCACCTTCTTCGAGTTAA+TGG 0.259647 1_1:+57256243 Msa0030780:CDS
GGGCAGTGTCTGGGTCTAAT+TGG 0.261350 1_1:+57257205 Msa0030780:CDS
ATGGGCAGCACAATTATTTC+TGG 0.273746 1_1:-57258551 None:intergenic
GAGGGAGGGAAGAGAGGATT+AGG 0.296865 1_1:-57253554 None:intergenic
CTTCTGGATTATCAAGTTCT+TGG 0.299672 1_1:+57257133 Msa0030780:CDS
AGCGAGTTTACCGCCATAAA+TGG 0.321471 1_1:-57253325 None:intergenic
AAGCGGCGGATTGATGCTTC+TGG 0.330006 1_1:+57257117 Msa0030780:CDS
CTTTGTTAGGCTTCCCTCAA+TGG 0.332853 1_1:+57255390 Msa0030780:intron
CTGTGACTCAAAGCTTAAAT+CGG 0.333227 1_1:+57258952 Msa0030780:CDS
GGTGAGTGGTCGAGCTCTTA+AGG 0.337486 1_1:+57257227 Msa0030780:CDS
GAAGATGGACAAGGGTAGAT+TGG 0.339049 1_1:-57256926 None:intergenic
TTGCCATATTATGGATTTCT+GGG 0.346640 1_1:+57256296 Msa0030780:CDS
TTCTGTACATACAAACAAAT+GGG 0.351608 1_1:+57259202 Msa0030780:three_prime_UTR
GTCAGACACTGTGGCGTTCA+TGG 0.360223 1_1:-57258570 None:intergenic
GATCCCAGAAATCCATAATA+TGG 0.360486 1_1:-57256299 None:intergenic
TTTGTTAGGCTTCCCTCAAT+GGG 0.361104 1_1:+57255391 Msa0030780:intron
AGGGAGGGAAGAGAGGATTA+GGG 0.362633 1_1:-57253553 None:intergenic
ACAGGCGCGTGGTCCAGTTT+TGG 0.362719 1_1:-57253623 None:intergenic
CTTCTGTACATACAAACAAA+TGG 0.364173 1_1:+57259201 Msa0030780:three_prime_UTR
ACCCAGGTCAAGTTCTTGTT+AGG 0.368519 1_1:+57258692 Msa0030780:CDS
TAGTTGTCGTTGGATTAATC+TGG 0.373810 1_1:-57253512 None:intergenic
CTTGCTCAACCCATTCTTCC+CGG 0.379282 1_1:-57258750 None:intergenic
TAAGCTTTGAGTCACAGTTT+TGG 0.381961 1_1:-57258946 None:intergenic
CCATGGATTTCCCTTCATAA+TGG 0.392563 1_1:-57256821 None:intergenic
GGAAAATACTCCGGGAAGAA+TGG 0.394505 1_1:+57258740 Msa0030780:CDS
GTGCCTTCTAATATTCGTTA+AGG 0.394542 1_1:+57259049 Msa0030780:CDS
AGCAGATGCAATCCTCAAAC+TGG 0.397969 1_1:+57257339 Msa0030780:CDS
GGGAAGAGAGGATTAGGGTT+TGG 0.399226 1_1:-57253548 None:intergenic
CAAACAAAACGGGCTGGAAC+AGG 0.401043 1_1:-57258914 None:intergenic
ATCCCCATTGAGGGATGGTT+GGG 0.403089 1_1:-57255425 None:intergenic
ATGGCGGTAAACTCGCTTAA+CGG 0.404145 1_1:+57253331 Msa0030780:five_prime_UTR
TATTCTTCTTGTATGTTATG+TGG 0.405748 1_1:-57253413 None:intergenic
ATAAATATCTCAAGCATTGC+AGG 0.407912 1_1:-57258313 None:intergenic
GCTGGAACAGGAGCAGTATC+AGG 0.408996 1_1:-57258902 None:intergenic
ACGACTCTCTGCTTCATCCT+TGG 0.409786 1_1:+57258336 Msa0030780:CDS
CACAACTAGTGGTAGTTACA+TGG 0.412758 1_1:+57259012 Msa0030780:CDS
CAGATAGGCATTGGTGGGAC+AGG 0.414785 1_1:+57259137 Msa0030780:three_prime_UTR
TGGCGGCACACTAGGTGTTT+TGG 0.417600 1_1:+57258875 Msa0030780:CDS
GGTTATGTCATCAGACTTAG+AGG 0.417691 1_1:-57257088 None:intergenic
AATTCATACACTCCAGTTTG+AGG 0.420254 1_1:-57257351 None:intergenic
TTCTGGATTATCAAGTTCTT+GGG 0.428561 1_1:+57257134 Msa0030780:CDS
GTAGTCCATGCCAATGGTTA+TGG 0.431968 1_1:+57256222 Msa0030780:CDS
TGAAAAGAAATCGTGGTAAT+CGG 0.432279 1_1:-57253711 None:intergenic
CTGGGAGGAAAAGTAGTCTA+TGG 0.434257 1_1:+57257303 Msa0030780:CDS
GAGTGCTGCGGGCAGTGTCT+GGG 0.436397 1_1:+57257196 Msa0030780:CDS
AAACTGGAGTGTATGAATTC+AGG 0.437264 1_1:+57257355 Msa0030780:CDS
ATTCTTCTTGTATGTTATGT+GGG 0.439979 1_1:-57253412 None:intergenic
GTGAGTGGTCGAGCTCTTAA+GGG 0.441244 1_1:+57257228 Msa0030780:CDS
GGCAGTGTCTGGGTCTAATT+GGG 0.443159 1_1:+57257206 Msa0030780:CDS
TGGCTTCAGTATCTTCAGAT+TGG 0.443173 1_1:-57258520 None:intergenic
ATACCCAACCATCCCTCAAT+GGG 0.446209 1_1:+57255422 Msa0030780:CDS
AGCATGAGCTTGTAAATATG+AGG 0.447036 1_1:+57257016 Msa0030780:CDS
TAGTCCATGCCAATGGTTAT+GGG 0.447768 1_1:+57256223 Msa0030780:CDS
AGGCAATAATCAAGAAGCTC+TGG 0.453831 1_1:-57257273 None:intergenic
GAAAGGGAGGGAGGGAAGAG+AGG 0.456348 1_1:-57253560 None:intergenic
ATACCTTAACGAATATTAGA+AGG 0.457774 1_1:-57259052 None:intergenic
TCAGAAGGACACTTTGAGCC+TGG 0.459391 1_1:-57258281 None:intergenic
ATGGATGTTTCGAAGAAATA+CGG 0.460142 1_1:+57256775 Msa0030780:CDS
TTTCAAGTTGACGAACTAGT+TGG 0.465947 1_1:+57258647 Msa0030780:CDS
GATTATTGCCTTTCTGAACT+GGG 0.470034 1_1:+57257285 Msa0030780:CDS
GGCATCTCGAACAAACAAAA+CGG 0.474585 1_1:-57258925 None:intergenic
TAAATTACGTATCTCATGTC+AGG 0.475811 1_1:+57258484 Msa0030780:CDS
ATGGCCAACAATAATTCTCC+AGG 0.475823 1_1:+57258263 Msa0030780:CDS
CGGTGGAAGAAGCGCGTACT+TGG 0.477965 1_1:-57253810 None:intergenic
GATAGAGGAGGAGAGGAGAG+TGG 0.483741 1_1:-57253384 None:intergenic
TGATCTCACCGACACGGAAG+AGG 0.494276 1_1:-57253871 None:intergenic
AAATCCATGGTATGGTGAGT+GGG 0.494538 1_1:+57256834 Msa0030780:CDS
GATGACTTGTGTTCTCTAGT+TGG 0.495311 1_1:-57256188 None:intergenic
GTGGTGTGTGGCGGCACACT+AGG 0.496354 1_1:+57258867 Msa0030780:CDS
CATCCCCATTGAGGGATGGT+TGG 0.497101 1_1:-57255426 None:intergenic
GCATCTCGAACAAACAAAAC+GGG 0.498064 1_1:-57258924 None:intergenic
TATACCCAACCATCCCTCAA+TGG 0.499501 1_1:+57255421 Msa0030780:CDS
CAAGATTCCATCCCCATTGA+GGG 0.500286 1_1:-57255434 None:intergenic
TGAGCCTGGAGAATTATTGT+TGG 0.501457 1_1:-57258267 None:intergenic
CTGATCACAATACACAGATC+TGG 0.501969 1_1:-57253960 None:intergenic
GTGGATCTGAAAGGGAGGGA+GGG 0.502445 1_1:-57253568 None:intergenic
CACAGCACATACATGGTTTG+TGG 0.505639 1_1:-57255275 None:intergenic
ATAGCCTGTAAATAACAGAT+AGG 0.506489 1_1:+57259122 Msa0030780:three_prime_UTR
GAAAATACTCCGGGAAGAAT+GGG 0.508237 1_1:+57258741 Msa0030780:CDS
TCTTAAGGGTGCTGTTTGCA+AGG 0.508491 1_1:+57257242 Msa0030780:CDS
CTTCGAGTTAATGGCAGAGA+AGG 0.508940 1_1:+57256252 Msa0030780:CDS
CTGTTCCTGGGAGAGGAAGA+TGG 0.508967 1_1:-57256941 None:intergenic
TGTGGATCTGAAAGGGAGGG+AGG 0.509744 1_1:-57253569 None:intergenic
CTTGCTCCATGCCATTATGA+AGG 0.511393 1_1:+57256810 Msa0030780:CDS
CTCTCTGAAGCGGCGAGGGA+TGG 0.512575 1_1:-57253743 None:intergenic
TGCCCGCAGCACTCTGAGCA+TGG 0.513183 1_1:-57257187 None:intergenic
GAAGCCTCACTCACGTGTGC+AGG 0.514046 1_1:+57256963 Msa0030780:CDS
TTCGAGTTAATGGCAGAGAA+GGG 0.516352 1_1:+57256253 Msa0030780:CDS
TCAGACACTGTGGCGTTCAT+GGG 0.519152 1_1:-57258569 None:intergenic
TTGAGTTTGATAGTTGTCGT+TGG 0.520025 1_1:-57253522 None:intergenic
TGTAAATAACAGATAGGCAT+TGG 0.520470 1_1:+57259128 Msa0030780:three_prime_UTR
GAAACTCTCTGAAGCGGCGA+GGG 0.523140 1_1:-57253747 None:intergenic
AGCCATGCTCAGAGTGCTGC+GGG 0.524086 1_1:+57257185 Msa0030780:CDS
GGGGAGAGATAGAGGAGGAG+AGG 0.525352 1_1:-57253391 None:intergenic
GGTTATTTGCCTTGACGTTG+TGG 0.525726 1_1:+57253919 Msa0030780:CDS
GAGGCTTCTGTTCCTGGGAG+AGG 0.525836 1_1:-57256948 None:intergenic
AGTTGTCGTTGGATTAATCT+GGG 0.525921 1_1:-57253511 None:intergenic
AAAGCTGATGGGAGATCCAT+TGG 0.526083 1_1:+57255246 Msa0030780:CDS
CGAGTGCAACTGTGGGGCTA+AGG 0.528208 1_1:+57258808 Msa0030780:CDS
CTCGAACAAACAAAACGGGC+TGG 0.528227 1_1:-57258920 None:intergenic
AATGGCAAGGCAAATTAGAC+CGG 0.528363 1_1:-57253307 None:intergenic
GTGTCCGAGGAAAATACTCC+GGG 0.528936 1_1:+57258732 Msa0030780:CDS
GCCTGTAACCTCTTCTATCA+TGG 0.529709 1_1:+57253640 Msa0030780:exon
GAGTGAACATTAGAACGAAA+AGG 0.529732 1_1:-57253779 None:intergenic
GGCAGCACAATTATTTCTGG+TGG 0.530349 1_1:-57258548 None:intergenic
TGTGACTCAAAGCTTAAATC+GGG 0.530463 1_1:+57258953 Msa0030780:CDS
CCAGTGATGATGTTGAAGAC+TGG 0.530691 1_1:+57256157 Msa0030780:CDS
GAGTTGTGGATCTGAAAGGG+AGG 0.535893 1_1:-57253573 None:intergenic
TGAGTGAGGCTTCTGTTCCT+GGG 0.540825 1_1:-57256953 None:intergenic
TGGACTGTCGAGTGCAACTG+TGG 0.541774 1_1:+57258800 Msa0030780:CDS
ACAAGATTCCATCCCCATTG+AGG 0.543048 1_1:-57255435 None:intergenic
TTCTTCTTGTATGTTATGTG+GGG 0.543399 1_1:-57253411 None:intergenic
GGAGAGTTGTGGATCTGAAA+GGG 0.546759 1_1:-57253576 None:intergenic
TCTTCTATCATGGTCGTTAG+CGG 0.547897 1_1:+57253650 Msa0030780:exon
ATCTGCCACGTCAGCAAGTG+CGG 0.548221 1_1:-57253848 None:intergenic
ATGAAGGGAAATCCATGGTA+TGG 0.549939 1_1:+57256826 Msa0030780:CDS
ACCATGATAGAAGAGGTTAC+AGG 0.551059 1_1:-57253641 None:intergenic
CTTGTCCATCTTCCTCTCCC+AGG 0.551423 1_1:+57256936 Msa0030780:CDS
TATGCAAGACACTTGGAGCT+AGG 0.552164 1_1:+57256325 Msa0030780:CDS
GAAATCCATGGTATGGTGAG+TGG 0.552195 1_1:+57256833 Msa0030780:CDS
AATGAAGTGGTTTGTGTCCG+AGG 0.552271 1_1:+57258719 Msa0030780:CDS
AGATAGGCATTGGTGGGACA+GGG 0.552999 1_1:+57259138 Msa0030780:three_prime_UTR
AAGAAGGTGCCCATAACCAT+TGG 0.553682 1_1:-57256232 None:intergenic
GGACTGTCGAGTGCAACTGT+GGG 0.555876 1_1:+57258801 Msa0030780:CDS
GAGATCTCGGTGGAGAGTTG+TGG 0.556584 1_1:-57253587 None:intergenic
GCCGCTTCAGAGAGTTTCTC+CGG 0.557550 1_1:+57253752 Msa0030780:CDS
CTCTGCCATTAACTCGAAGA+AGG 0.560242 1_1:-57256248 None:intergenic
CGTGTCGGTGAGATCACCGA+TGG 0.560339 1_1:+57253878 Msa0030780:CDS
TGCAGGATATTCTCTTCAGA+AGG 0.560841 1_1:-57258296 None:intergenic
GAAGCGGCGAGGGATGGTGA+AGG 0.562556 1_1:-57253737 None:intergenic
GACTTGTGTTCTCTAGTTGG+TGG 0.563261 1_1:-57256185 None:intergenic
CAACCATCCCTCAATGGGGA+TGG 0.564228 1_1:+57255427 Msa0030780:CDS
CCAGTCTTCAACATCATCAC+TGG 0.564657 1_1:-57256157 None:intergenic
CAGTGATGATGTTGAAGACT+GGG 0.564685 1_1:+57256158 Msa0030780:CDS
GGAAACAACGCGGAAGGCGG+TGG 0.565303 1_1:-57253827 None:intergenic
TGGAGAGTTGTGGATCTGAA+AGG 0.568009 1_1:-57253577 None:intergenic
TGGGTTGAGCAAGTTTCGAA+TGG 0.568760 1_1:+57258760 Msa0030780:CDS
TGTTTCCGCACTTGCTGACG+TGG 0.569675 1_1:+57253843 Msa0030780:CDS
GATCGCCTATGCAAGACACT+TGG 0.570540 1_1:+57256318 Msa0030780:CDS
CCACTGTAAAGATGAGAGAC+TGG 0.570607 1_1:+57258979 Msa0030780:CDS
AAGTGCGGAAACAACGCGGA+AGG 0.578936 1_1:-57253833 None:intergenic
TGGATGTTTCGAAGAAATAC+GGG 0.580345 1_1:+57256776 Msa0030780:CDS
AAAGAGTGACGTTGAACGTG+TGG 0.580901 1_1:+57257158 Msa0030780:CDS
CTTGTTAGGATCAAATGAAG+TGG 0.581722 1_1:+57258706 Msa0030780:CDS
AAGAACTCTTGCAATGAGCT+CGG 0.581985 1_1:+57258388 Msa0030780:CDS
ATATCTCCACAGCACATACA+TGG 0.583294 1_1:-57255282 None:intergenic
AATAACAGATAGGCATTGGT+GGG 0.583324 1_1:+57259132 Msa0030780:three_prime_UTR
GCTCATGCTCTGACAAAGAC+CGG 0.584807 1_1:-57257002 None:intergenic
TGTGGGGCTAAGGATGATGA+TGG 0.586935 1_1:+57258818 Msa0030780:CDS
TCTTCTTGTATGTTATGTGG+GGG 0.587667 1_1:-57253410 None:intergenic
GGAGGAAAAGTAGTCTATGG+TGG 0.589886 1_1:+57257306 Msa0030780:CDS
TTGCTCCATGCCATTATGAA+GGG 0.590236 1_1:+57256811 Msa0030780:CDS
AAATAACAGATAGGCATTGG+TGG 0.591327 1_1:+57259131 Msa0030780:three_prime_UTR
AAGCCATGCTCAGAGTGCTG+CGG 0.591353 1_1:+57257184 Msa0030780:CDS
TTTGCCAAAATAAAGAAGCC+CGG 0.591612 1_1:+57253288 None:intergenic
CATCATCACTGGTTGTCACA+TGG 0.592955 1_1:-57256146 None:intergenic
TGTGTCCGAGGAAAATACTC+CGG 0.593241 1_1:+57258731 Msa0030780:CDS
GATTTCCCTTCATAATGGCA+TGG 0.595321 1_1:-57256816 None:intergenic
TGGACAAGGGTAGATTGGAT+AGG 0.597123 1_1:-57256921 None:intergenic
TGGCGCGTGAGGTGAGATCT+CGG 0.597657 1_1:-57253600 None:intergenic
CATGGTGTAGTCCATGCCAA+TGG 0.598587 1_1:+57256216 Msa0030780:CDS
GAATGGAACGTGGACTTGAG+AGG 0.599671 1_1:+57258777 Msa0030780:CDS
AGCAAGTTTCGAATGGAACG+TGG 0.600571 1_1:+57258767 Msa0030780:CDS
GTGTCGGTGAGATCACCGAT+GGG 0.602427 1_1:+57253879 Msa0030780:CDS
TGGTTTGTGGTATCCACCAA+TGG 0.603238 1_1:-57255262 None:intergenic
AGTTGTGGATCTGAAAGGGA+GGG 0.603447 1_1:-57253572 None:intergenic
ATCCTAACAAGAACTTGACC+TGG 0.604261 1_1:-57258694 None:intergenic
TCGAGTTAATGGCAGAGAAG+GGG 0.604967 1_1:+57256254 Msa0030780:CDS
CTGGGAGAGGAAGATGGACA+AGG 0.606165 1_1:-57256935 None:intergenic
TAGCTCCAAGTGTCTTGCAT+AGG 0.606194 1_1:-57256323 None:intergenic
TGGTAACGCTTACTGCACAC+TGG 0.606738 1_1:-57255213 None:intergenic
TAAGGGTGCTGTTTGCAAGG+TGG 0.609196 1_1:+57257245 Msa0030780:CDS
CCATTATGAAGGGAAATCCA+TGG 0.613353 1_1:+57256821 Msa0030780:CDS
CGAGTTAATGGCAGAGAAGG+GGG 0.613514 1_1:+57256255 Msa0030780:CDS
GGTGCCCATAACCATTGGCA+TGG 0.613676 1_1:-57256227 None:intergenic
ATTCCATCCCCATTGAGGGA+TGG 0.613738 1_1:-57255430 None:intergenic
AATCCATGGTATGGTGAGTG+GGG 0.614854 1_1:+57256835 Msa0030780:CDS
TGCGGAAACAACGCGGAAGG+CGG 0.616307 1_1:-57253830 None:intergenic
AAGCGGCGAGGGATGGTGAA+GGG 0.618092 1_1:-57253736 None:intergenic
ATATCCTGCACACGTGAGTG+AGG 0.618383 1_1:-57256967 None:intergenic
ATTTGCCTTGCCATTTATGG+CGG 0.619045 1_1:+57253315 Msa0030780:five_prime_UTR
GTTTACCGCCATAAATGGCA+AGG 0.621211 1_1:-57253320 None:intergenic
GAGGAAAAGTAGTCTATGGT+GGG 0.621787 1_1:+57257307 Msa0030780:CDS
TGATGATGGAGAGAGAATGA+TGG 0.623364 1_1:+57258832 Msa0030780:CDS
GCATGAGCTTGTAAATATGA+GGG 0.624440 1_1:+57257017 Msa0030780:CDS
ACAACTAGTGGTAGTTACAT+GGG 0.628297 1_1:+57259013 Msa0030780:CDS
TCTATCATGGTCGTTAGCGG+AGG 0.629761 1_1:+57253653 Msa0030780:exon
GCTAACGACCATGATAGAAG+AGG 0.631432 1_1:-57253648 None:intergenic
TCTGTACATACAAACAAATG+GGG 0.631676 1_1:+57259203 Msa0030780:three_prime_UTR
TGGCAGAAAAGTTAGTGTGA+TGG 0.634616 1_1:+57256756 Msa0030780:intron
ACATAGTTTAGCATCATCCA+AGG 0.634897 1_1:-57258353 None:intergenic
GCTGATGGGAGATCCATTGG+TGG 0.636198 1_1:+57255249 Msa0030780:CDS
TGGCAGATCCTCTTCCGTGT+CGG 0.637514 1_1:+57253863 Msa0030780:CDS
AGAAACTCTCTGAAGCGGCG+AGG 0.637539 1_1:-57253748 None:intergenic
GTGATATGTGTGGTGTGTGG+CGG 0.639114 1_1:+57258858 Msa0030780:CDS
CATCTTCTTCCACAACGTCA+AGG 0.640303 1_1:-57253928 None:intergenic
ATTAGAACGAAAAGGTCCGC+CGG 0.640366 1_1:-57253771 None:intergenic
GAGTGACGTTGAACGTGTGG+AGG 0.640450 1_1:+57257161 Msa0030780:CDS
ATGGCAAGGCAAATTAGACC+GGG 0.642515 1_1:-57253306 None:intergenic
ATAATCAAGAAGCTCTGGAG+AGG 0.642892 1_1:-57257268 None:intergenic
GACTCAAAGCTTAAATCGGG+TGG 0.643015 1_1:+57258956 Msa0030780:CDS
TTGTTAGGCTTCCCTCAATG+GGG 0.644663 1_1:+57255392 Msa0030780:intron
CATGTAACTACCACTAGTTG+TGG 0.646057 1_1:-57259011 None:intergenic
TGGAACGTGGACTTGAGAGG+TGG 0.649309 1_1:+57258780 Msa0030780:CDS
GTCGGTGAGATCACCGATGG+GGG 0.651106 1_1:+57253881 Msa0030780:CDS
TATCCCCACTCACCATACCA+TGG 0.651467 1_1:-57256838 None:intergenic
AATTTAGACAAATCTGACAC+TGG 0.653271 1_1:-57258467 None:intergenic
TGTTAGGCTTCCCTCAATGG+GGG 0.653353 1_1:+57255393 Msa0030780:intron
CACAAACCATGTATGTGCTG+TGG 0.653907 1_1:+57255276 Msa0030780:CDS
AAGGGAATGAAAAGAAATCG+TGG 0.654007 1_1:-57253718 None:intergenic
TATTGCCTTTCTGAACTGGG+AGG 0.655842 1_1:+57257288 Msa0030780:CDS
TCTGGGTCTAATTGGGTGAG+TGG 0.656988 1_1:+57257213 Msa0030780:CDS
GACTGTCGAGTGCAACTGTG+GGG 0.662182 1_1:+57258802 Msa0030780:CDS
CTGTACATACAAACAAATGG+GGG 0.662633 1_1:+57259204 Msa0030780:three_prime_UTR
ACGTCAAGGCAAATAACCGC+CGG 0.662764 1_1:-57253914 None:intergenic
GCCGGAGAAACTCTCTGAAG+CGG 0.664956 1_1:-57253753 None:intergenic
TAACAAGAACTTGACCTGGG+TGG 0.673206 1_1:-57258690 None:intergenic
TGTCGGTGAGATCACCGATG+GGG 0.674929 1_1:+57253880 Msa0030780:CDS
TAGAAGAGGTTACAGGCGCG+TGG 0.676595 1_1:-57253634 None:intergenic
TCCTAACAAGAACTTGACCT+GGG 0.680686 1_1:-57258693 None:intergenic
TGGCAGCTATTGTCTCACAC+AGG 0.681148 1_1:+57256873 Msa0030780:CDS
CCAGTCTCTCATCTTTACAG+TGG 0.682996 1_1:-57258979 None:intergenic
CTTGTGATATGTGTGGTGTG+TGG 0.684382 1_1:+57258855 Msa0030780:CDS
CATCGGTGATCTCACCGACA+CGG 0.685141 1_1:-57253877 None:intergenic
GCTAGTGTTACCACAACTAG+TGG 0.686933 1_1:+57259001 Msa0030780:CDS
AAAGAAATCGTGGTAATCGG+CGG 0.688894 1_1:-57253708 None:intergenic
AATCTTTAGGTCAGACACTG+TGG 0.691571 1_1:-57258579 None:intergenic
TTAGACAAATCTGACACTGG+CGG 0.691794 1_1:-57258464 None:intergenic
GACGAACTAGTTGGCTACAG+CGG 0.692981 1_1:+57258656 Msa0030780:CDS
TAGAACCTGAAATATGAACA+AGG 0.696033 1_1:-57259165 None:intergenic
TGGGAGAGGAAGATGGACAA+GGG 0.696590 1_1:-57256934 None:intergenic
TACCCAACCATCCCTCAATG+GGG 0.711748 1_1:+57255423 Msa0030780:CDS
CAGCAAGTGCGGAAACAACG+CGG 0.723754 1_1:-57253837 None:intergenic
GCTTCAGAGAGTTTCTCCGG+CGG 0.727571 1_1:+57253755 Msa0030780:CDS
CGGTGTAGAAGATTCCACCC+AGG 0.728487 1_1:+57258676 Msa0030780:CDS
ATGATGGCTTGTGATATGTG+TGG 0.730981 1_1:+57258848 Msa0030780:CDS
CGCGTGAGGTGAGATCTCGG+TGG 0.742621 1_1:-57253597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGCATATTATTATAA+TGG - chr1_1:57254190-57254209 None:intergenic 10.0%
!!! AATAGTCAATATTATTTTTT+GGG - chr1_1:57254752-57254771 None:intergenic 10.0%
!!! CAGATATATATTTTATTTTT+TGG + chr1_1:57254982-57255001 Msa0030780:intron 10.0%
!! AAAAAACAATACAAATTAAT+AGG - chr1_1:57255171-57255190 None:intergenic 10.0%
!! TAATTGATATAGTTAAAATA+GGG + chr1_1:57256371-57256390 Msa0030780:intron 10.0%
!! TAATTTAAATATAAGCAAAT+GGG - chr1_1:57257697-57257716 None:intergenic 10.0%
!! GAAAAAATAACAAATTAATT+AGG + chr1_1:57257743-57257762 Msa0030780:intron 10.0%
!! AAAAATAACAAATTAATTAG+GGG + chr1_1:57257745-57257764 Msa0030780:intron 10.0%
!! ATATAGATTATAATTTATAC+AGG - chr1_1:57257948-57257967 None:intergenic 10.0%
!! TGTATAAATTATAATCTATA+TGG + chr1_1:57257947-57257966 Msa0030780:intron 10.0%
!! ATGGATAAATATATTTAAAA+AGG + chr1_1:57257966-57257985 Msa0030780:intron 10.0%
!! ATGCAAATTAAAATTGAAAT+TGG + chr1_1:57254111-57254130 Msa0030780:intron 15.0%
!!! TTTCATTTGGATATTTTTTT+TGG + chr1_1:57254620-57254639 Msa0030780:intron 15.0%
!!! CAATAGTCAATATTATTTTT+TGG - chr1_1:57254753-57254772 None:intergenic 15.0%
!! GTAATTGATATAGTTAAAAT+AGG + chr1_1:57256370-57256389 Msa0030780:intron 15.0%
!! CTAATTTAAATATAAGCAAA+TGG - chr1_1:57257698-57257717 None:intergenic 15.0%
!! TTAAATTTAATAGAGAAACA+AGG - chr1_1:57257904-57257923 None:intergenic 15.0%
!!! TAAATTTAAAATTGTTACAC+TGG + chr1_1:57257915-57257934 Msa0030780:intron 15.0%
!! GAAAGTGATAAAAAGAAAAA+GGG - chr1_1:57253442-57253461 None:intergenic 20.0%
!! AGAAAGTGATAAAAAGAAAA+AGG - chr1_1:57253443-57253462 None:intergenic 20.0%
!! ATTAATTAAAGCAAAAGAGT+CGG - chr1_1:57254069-57254088 None:intergenic 20.0%
!!! ACTCTTTTGCTTTAATTAAT+AGG + chr1_1:57254069-57254088 Msa0030780:intron 20.0%
!! AAGAGAATATAAATGGTATT+TGG + chr1_1:57254397-57254416 Msa0030780:intron 20.0%
!! AGAGAATATAAATGGTATTT+GGG + chr1_1:57254398-57254417 Msa0030780:intron 20.0%
!!! ACACTTTTTAAATGAATAAG+TGG + chr1_1:57255031-57255050 Msa0030780:intron 20.0%
!!! CACTTTTTAAATGAATAAGT+GGG + chr1_1:57255032-57255051 Msa0030780:intron 20.0%
!!! ACTTTTTAAATGAATAAGTG+GGG + chr1_1:57255033-57255052 Msa0030780:intron 20.0%
!! AACAAAAAAAATAGCTCAAT+TGG - chr1_1:57255101-57255120 None:intergenic 20.0%
!!! TTGTTTAACTTTTGTTTTCT+TGG + chr1_1:57255116-57255135 Msa0030780:intron 20.0%
!!! TTGTATTGTTTTTTGAACTT+AGG + chr1_1:57255177-57255196 Msa0030780:intron 20.0%
!!! ATTTTATAATCAAAGCTGAT+GGG + chr1_1:57255235-57255254 Msa0030780:CDS 20.0%
!! TTATGAAATATAAGAATGAG+AGG + chr1_1:57255534-57255553 Msa0030780:intron 20.0%
!! CAAATTTCAATCTACAATTA+AGG - chr1_1:57255687-57255706 None:intergenic 20.0%
!! CTTAATTGTAGATTGAAATT+TGG + chr1_1:57255685-57255704 Msa0030780:intron 20.0%
!!! ATGACTAATTTTCTAGAATT+TGG - chr1_1:57255714-57255733 None:intergenic 20.0%
!!! ATTTCATACTGAAAGTATTT+AGG - chr1_1:57256469-57256488 None:intergenic 20.0%
!! GATCATTCAAATTAAATATG+AGG + chr1_1:57256577-57256596 Msa0030780:intron 20.0%
!! GAAACAAGAGAATATTATTT+AGG + chr1_1:57256670-57256689 Msa0030780:intron 20.0%
!! TTAGGTTATTTGTGTTTATA+TGG + chr1_1:57256688-57256707 Msa0030780:intron 20.0%
!! TATTTGTGTTTATATGGATA+TGG + chr1_1:57256694-57256713 Msa0030780:intron 20.0%
!!! TTTAAGTTTAACTGCTTAAA+AGG + chr1_1:57257421-57257440 Msa0030780:intron 20.0%
!!! AACTGATTTGAAATCATATA+AGG - chr1_1:57258195-57258214 None:intergenic 20.0%
! ATTCTTCTTGTATGTTATGT+GGG - chr1_1:57253415-57253434 None:intergenic 25.0%
! TATTCTTCTTGTATGTTATG+TGG - chr1_1:57253416-57253435 None:intergenic 25.0%
!! TCTTCTTTTCATACGTTTTA+AGG - chr1_1:57253684-57253703 None:intergenic 25.0%
! GATATATTGTGACGATAAAA+TGG + chr1_1:57254359-57254378 Msa0030780:intron 25.0%
! GATAAAATGGAGAGATATTA+GGG + chr1_1:57254372-57254391 Msa0030780:intron 25.0%
! AATATAAATGGTATTTGGGT+GGG + chr1_1:57254402-57254421 Msa0030780:intron 25.0%
!!! GCAACTTTTCTTTTTTCATT+TGG + chr1_1:57254607-57254626 Msa0030780:intron 25.0%
!!! TTTTTGGAATATTCTCCATT+TGG + chr1_1:57254636-57254655 Msa0030780:intron 25.0%
! AAAAAAAATAGCTCAATTGG+TGG - chr1_1:57255098-57255117 None:intergenic 25.0%
! ACTCTATCAAGAAAAACAAT+AGG - chr1_1:57255148-57255167 None:intergenic 25.0%
!! CATCAGCTTTGATTATAAAA+TGG - chr1_1:57255236-57255255 None:intergenic 25.0%
!! CATTTTATAATCAAAGCTGA+TGG + chr1_1:57255234-57255253 Msa0030780:CDS 25.0%
! CAATTGATAAGAATATCCAA+AGG - chr1_1:57255363-57255382 None:intergenic 25.0%
!!! CAATTGATTGTTACTTTGTT+AGG + chr1_1:57255377-57255396 Msa0030780:intron 25.0%
!! TCATGTTTATATCTGAAATG+AGG + chr1_1:57255483-57255502 Msa0030780:intron 25.0%
!! CATGTTTATATCTGAAATGA+GGG + chr1_1:57255484-57255503 Msa0030780:intron 25.0%
! AGTAATAAATGACTTAGGTT+GGG - chr1_1:57255645-57255664 None:intergenic 25.0%
! TAGTAATAAATGACTTAGGT+TGG - chr1_1:57255646-57255665 None:intergenic 25.0%
! TCAGTAGTAATAAATGACTT+AGG - chr1_1:57255650-57255669 None:intergenic 25.0%
! CTGTAAATTGAATAAACCAA+GGG - chr1_1:57255850-57255869 None:intergenic 25.0%
! CTGTAAATTGAATAAACCAA+GGG - chr1_1:57255850-57255869 None:intergenic 25.0%
! CATGCATTAAGAAAAACAAA+AGG - chr1_1:57255999-57256018 None:intergenic 25.0%
!!! ATGATTTTAGAAATAGCATG+TGG + chr1_1:57256059-57256078 Msa0030780:intron 25.0%
! ATATTCAGTACATTACACTT+AGG + chr1_1:57256610-57256629 Msa0030780:intron 25.0%
!! AGGATATGATTTTGTATTAC+CGG + chr1_1:57256983-57257002 Msa0030780:CDS 25.0%
!!! GACCTATTTTGTTTTTTGAT+GGG + chr1_1:57257039-57257058 Msa0030780:CDS 25.0%
! AACCCATCAAAAAACAAAAT+AGG - chr1_1:57257044-57257063 None:intergenic 25.0%
! TTAGATTTCAATGTGATTCT+TGG + chr1_1:57257378-57257397 Msa0030780:intron 25.0%
! TACACATCACATTTATAACA+TGG - chr1_1:57257475-57257494 None:intergenic 25.0%
!!! AAGTTTTAGATGTTTGTTTC+TGG + chr1_1:57257632-57257651 Msa0030780:intron 25.0%
!!! AAAGCATTGATATTATCTCT+TGG + chr1_1:57258113-57258132 Msa0030780:intron 25.0%
!!! CAAAGAATTAAAAAAGCATC+AGG - chr1_1:57258160-57258179 None:intergenic 25.0%
!!! CTGATGCTTTTTTAATTCTT+TGG + chr1_1:57258158-57258177 Msa0030780:intron 25.0%
! TATTGTGTTCTATTTGTTTC+AGG + chr1_1:57258219-57258238 Msa0030780:intron 25.0%
!!! TGATGCTACAAATGTTTTTA+TGG + chr1_1:57258244-57258263 Msa0030780:CDS 25.0%
!!! AATTATTTCTGGTGGAATTT+TGG - chr1_1:57258543-57258562 None:intergenic 25.0%
! ATACCTTAACGAATATTAGA+AGG - chr1_1:57259055-57259074 None:intergenic 25.0%
! TTCTGTACATACAAACAAAT+GGG + chr1_1:57259202-57259221 Msa0030780:three_prime_UTR 25.0%
TTCTTCTTGTATGTTATGTG+GGG - chr1_1:57253414-57253433 None:intergenic 30.0%
! AATCTGGGAAGAACATTTTA+TGG - chr1_1:57253499-57253518 None:intergenic 30.0%
TGAAAAGAAATCGTGGTAAT+CGG - chr1_1:57253714-57253733 None:intergenic 30.0%
CGATAAAATGGAGAGATATT+AGG + chr1_1:57254371-57254390 Msa0030780:intron 30.0%
TAGGGAGAAGAGAATATAAA+TGG + chr1_1:57254390-57254409 Msa0030780:intron 30.0%
GAATATAAATGGTATTTGGG+TGG + chr1_1:57254401-57254420 Msa0030780:intron 30.0%
!!! GTGGTTTTGATTTTTGGATA+CGG + chr1_1:57254482-57254501 Msa0030780:intron 30.0%
TTGTGCTAAAAAGTTATGCT+TGG + chr1_1:57254568-57254587 Msa0030780:intron 30.0%
ACAACTAAGCAAAATCCAAA+TGG - chr1_1:57254654-57254673 None:intergenic 30.0%
!!! ATTGTTCTTTTTTGCAACAC+TGG + chr1_1:57254821-57254840 Msa0030780:intron 30.0%
!!! TTTTTGGTTTAGTAGTGTAG+TGG + chr1_1:57254998-57255017 Msa0030780:intron 30.0%
AATGGAGAAAAATACTCACT+TGG - chr1_1:57255325-57255344 None:intergenic 30.0%
AGGATGACAATTGCATAAAA+TGG - chr1_1:57255343-57255362 None:intergenic 30.0%
TTTATGCAATTGTCATCCTT+TGG + chr1_1:57255344-57255363 Msa0030780:intron 30.0%
TGCTGAAATAGAATGTTTGT+TGG + chr1_1:57255796-57255815 Msa0030780:intron 30.0%
! AAATAGAATGTTTGTTGGTC+TGG + chr1_1:57255801-57255820 Msa0030780:intron 30.0%
! AATAGAATGTTTGTTGGTCT+GGG + chr1_1:57255802-57255821 Msa0030780:intron 30.0%
GCTGTAAATTGAATAAACCA+AGG - chr1_1:57255851-57255870 None:intergenic 30.0%
GCTGTAAATTGAATAAACCA+AGG - chr1_1:57255851-57255870 None:intergenic 30.0%
! TGTTTTTCTTAATGCATGTC+TGG + chr1_1:57256001-57256020 Msa0030780:intron 30.0%
!! ATTTTAGAAATAGCATGTGG+TGG + chr1_1:57256062-57256081 Msa0030780:intron 30.0%
! AACACAAGTCATCTTTTACA+TGG + chr1_1:57256198-57256217 Msa0030780:CDS 30.0%
TTGCCATATTATGGATTTCT+GGG + chr1_1:57256296-57256315 Msa0030780:CDS 30.0%
!! CACTACTTAACAGAAGTATT+AGG - chr1_1:57256433-57256452 None:intergenic 30.0%
CTAATACTTCTGTTAAGTAG+TGG + chr1_1:57256431-57256450 Msa0030780:intron 30.0%
AGTACATTACACTTAGGATT+TGG + chr1_1:57256616-57256635 Msa0030780:intron 30.0%
! TTTTCTGCCAATGTACAAAT+GGG - chr1_1:57256746-57256765 None:intergenic 30.0%
ATGGATGTTTCGAAGAAATA+CGG + chr1_1:57256775-57256794 Msa0030780:CDS 30.0%
!!! GGACCTATTTTGTTTTTTGA+TGG + chr1_1:57257038-57257057 Msa0030780:CDS 30.0%
TTCTGGATTATCAAGTTCTT+GGG + chr1_1:57257134-57257153 Msa0030780:CDS 30.0%
AAGTTTAACTGCTTAAAAGG+AGG + chr1_1:57257424-57257443 Msa0030780:intron 30.0%
!!! TTACACTTTTCAAGTCAAGA+TGG + chr1_1:57257555-57257574 Msa0030780:intron 30.0%
!! TTCCTATCTAGTTCTTGTAA+TGG - chr1_1:57257674-57257693 None:intergenic 30.0%
TCAGTATTAGTAATGACATC+AGG - chr1_1:57258061-57258080 None:intergenic 30.0%
TGATGTCATTACTAATACTG+AGG + chr1_1:57258060-57258079 Msa0030780:intron 30.0%
!! TATTATCTCTTGGTGTTCTT+TGG + chr1_1:57258123-57258142 Msa0030780:intron 30.0%
! ATAAATATCTCAAGCATTGC+AGG - chr1_1:57258316-57258335 None:intergenic 30.0%
AATTTAGACAAATCTGACAC+TGG - chr1_1:57258470-57258489 None:intergenic 30.0%
TAAATTACGTATCTCATGTC+AGG + chr1_1:57258484-57258503 Msa0030780:CDS 30.0%
! TGTTATTTACAGGCTATTTC+AGG - chr1_1:57259119-57259138 None:intergenic 30.0%
ATAGCCTGTAAATAACAGAT+AGG + chr1_1:57259122-57259141 Msa0030780:three_prime_UTR 30.0%
! AATGCCTATCTGTTATTTAC+AGG - chr1_1:57259129-57259148 None:intergenic 30.0%
TGTAAATAACAGATAGGCAT+TGG + chr1_1:57259128-57259147 Msa0030780:three_prime_UTR 30.0%
TAGAACCTGAAATATGAACA+AGG - chr1_1:57259168-57259187 None:intergenic 30.0%
CTTCTGTACATACAAACAAA+TGG + chr1_1:57259201-57259220 Msa0030780:three_prime_UTR 30.0%
TCTGTACATACAAACAAATG+GGG + chr1_1:57259203-57259222 Msa0030780:three_prime_UTR 30.0%
! CTAATTTGCCTTGCCATTTA+TGG + chr1_1:57253312-57253331 Msa0030780:five_prime_UTR 35.0%
TCTTCTTGTATGTTATGTGG+GGG - chr1_1:57253413-57253432 None:intergenic 35.0%
AGTTGTCGTTGGATTAATCT+GGG - chr1_1:57253514-57253533 None:intergenic 35.0%
TAGTTGTCGTTGGATTAATC+TGG - chr1_1:57253515-57253534 None:intergenic 35.0%
! TTGAGTTTGATAGTTGTCGT+TGG - chr1_1:57253525-57253544 None:intergenic 35.0%
AAGGGAATGAAAAGAAATCG+TGG - chr1_1:57253721-57253740 None:intergenic 35.0%
GAGTGAACATTAGAACGAAA+AGG - chr1_1:57253782-57253801 None:intergenic 35.0%
!!! TGACACGTGGTTTTGATTTT+TGG + chr1_1:57254476-57254495 Msa0030780:intron 35.0%
!! AATGAATAAGTGGGGTATTG+CGG + chr1_1:57255041-57255060 Msa0030780:intron 35.0%
GATGGAATCTTGTAGGAATA+GGG + chr1_1:57255445-57255464 Msa0030780:intron 35.0%
! TTATATCTGAAATGAGGGCT+AGG + chr1_1:57255489-57255508 Msa0030780:intron 35.0%
! TATATCTGAAATGAGGGCTA+GGG + chr1_1:57255490-57255509 Msa0030780:intron 35.0%
! AACTACAATGCATTGGCATA+GGG - chr1_1:57255745-57255764 None:intergenic 35.0%
! TAACTACAATGCATTGGCAT+AGG - chr1_1:57255746-57255765 None:intergenic 35.0%
ACTCAGTAACTACAATGCAT+TGG - chr1_1:57255752-57255771 None:intergenic 35.0%
! ATAGAATGTTTGTTGGTCTG+GGG + chr1_1:57255803-57255822 Msa0030780:intron 35.0%
AATTGAATAAACCAAGGGAG+AGG - chr1_1:57255845-57255864 None:intergenic 35.0%
ATTTACAGCTAGTGAAGAAG+CGG + chr1_1:57255862-57255881 Msa0030780:intron 35.0%
AATTGAATAAACCAAGGGAG+AGG - chr1_1:57255845-57255864 None:intergenic 35.0%
ATTTACAGCTAGTGAAGAAG+CGG + chr1_1:57255862-57255881 Msa0030780:intron 35.0%
TAGTACCTGATCGTACATTA+TGG + chr1_1:57256088-57256107 Msa0030780:intron 35.0%
ATCAACCATAATGTACGATC+AGG - chr1_1:57256096-57256115 None:intergenic 35.0%
! GGTTGATCTGTTTTATCTTC+AGG + chr1_1:57256109-57256128 Msa0030780:intron 35.0%
!! TCTTTCTGGTTGCCATATTA+TGG + chr1_1:57256287-57256306 Msa0030780:CDS 35.0%
GTTGCCATATTATGGATTTC+TGG + chr1_1:57256295-57256314 Msa0030780:CDS 35.0%
GATCCCAGAAATCCATAATA+TGG - chr1_1:57256302-57256321 None:intergenic 35.0%
GTTTGTTCCCATTTGTACAT+TGG + chr1_1:57256736-57256755 Msa0030780:intron 35.0%
! CTTTTCTGCCAATGTACAAA+TGG - chr1_1:57256747-57256766 None:intergenic 35.0%
TGGATGTTTCGAAGAAATAC+GGG + chr1_1:57256776-57256795 Msa0030780:CDS 35.0%
AGCATGAGCTTGTAAATATG+AGG + chr1_1:57257016-57257035 Msa0030780:CDS 35.0%
GCATGAGCTTGTAAATATGA+GGG + chr1_1:57257017-57257036 Msa0030780:CDS 35.0%
ATGACATAACCTGCAAAAAG+CGG + chr1_1:57257100-57257119 Msa0030780:CDS 35.0%
CTTCTGGATTATCAAGTTCT+TGG + chr1_1:57257133-57257152 Msa0030780:CDS 35.0%
TGATTATTGCCTTTCTGAAC+TGG + chr1_1:57257284-57257303 Msa0030780:CDS 35.0%
GATTATTGCCTTTCTGAACT+GGG + chr1_1:57257285-57257304 Msa0030780:CDS 35.0%
AATTCATACACTCCAGTTTG+AGG - chr1_1:57257354-57257373 None:intergenic 35.0%
AAACTGGAGTGTATGAATTC+AGG + chr1_1:57257355-57257374 Msa0030780:CDS 35.0%
!! TTTAGATGTTTGTTTCTGGC+AGG + chr1_1:57257636-57257655 Msa0030780:intron 35.0%
GACCATTACAAGAACTAGAT+AGG + chr1_1:57257669-57257688 Msa0030780:intron 35.0%
CATTATGTGACATTGTCGTA+GGG + chr1_1:57257847-57257866 Msa0030780:intron 35.0%
AGGTTGGAAAAGGATATGAT+AGG - chr1_1:57258009-57258028 None:intergenic 35.0%
GAAGAACATCCACTATTTCA+GGG - chr1_1:57258091-57258110 None:intergenic 35.0%
AGAAGAACATCCACTATTTC+AGG - chr1_1:57258092-57258111 None:intergenic 35.0%
ACATAGTTTAGCATCATCCA+AGG - chr1_1:57258356-57258375 None:intergenic 35.0%
!! CTTTTGCTGCTTCAATCTTT+AGG - chr1_1:57258595-57258614 None:intergenic 35.0%
!! TTTCAAGTTGACGAACTAGT+TGG + chr1_1:57258647-57258666 Msa0030780:CDS 35.0%
CTTGTTAGGATCAAATGAAG+TGG + chr1_1:57258706-57258725 Msa0030780:CDS 35.0%
!!! TAAGCTTTGAGTCACAGTTT+TGG - chr1_1:57258949-57258968 None:intergenic 35.0%
CTGTGACTCAAAGCTTAAAT+CGG + chr1_1:57258952-57258971 Msa0030780:CDS 35.0%
TGTGACTCAAAGCTTAAATC+GGG + chr1_1:57258953-57258972 Msa0030780:CDS 35.0%
ACAACTAGTGGTAGTTACAT+GGG + chr1_1:57259013-57259032 Msa0030780:CDS 35.0%
GTGCCTTCTAATATTCGTTA+AGG + chr1_1:57259049-57259068 Msa0030780:CDS 35.0%
!! AAATAACAGATAGGCATTGG+TGG + chr1_1:57259131-57259150 Msa0030780:three_prime_UTR 35.0%
!! AATAACAGATAGGCATTGGT+GGG + chr1_1:57259132-57259151 Msa0030780:three_prime_UTR 35.0%
CTGTACATACAAACAAATGG+GGG + chr1_1:57259204-57259223 Msa0030780:three_prime_UTR 35.0%
!! TAGACCGGGCTTCTTTATTT+TGG - chr1_1:57253295-57253314 None:intergenic 40.0%
AATGGCAAGGCAAATTAGAC+CGG - chr1_1:57253310-57253329 None:intergenic 40.0%
! ATTTGCCTTGCCATTTATGG+CGG + chr1_1:57253315-57253334 Msa0030780:five_prime_UTR 40.0%
! GGAGAGTGGAGAGATTTTTA+AGG - chr1_1:57253373-57253392 None:intergenic 40.0%
ACCATGATAGAAGAGGTTAC+AGG - chr1_1:57253644-57253663 None:intergenic 40.0%
TCTTCTATCATGGTCGTTAG+CGG + chr1_1:57253650-57253669 Msa0030780:exon 40.0%
AAAGAAATCGTGGTAATCGG+CGG - chr1_1:57253711-57253730 None:intergenic 40.0%
CTGATCACAATACACAGATC+TGG - chr1_1:57253963-57253982 None:intergenic 40.0%
GAGTCAACTCACCAAAAACT+CGG - chr1_1:57253988-57254007 None:intergenic 40.0%
!!! GAGTTTTTGGTGAGTTGACT+CGG + chr1_1:57253987-57254006 Msa0030780:intron 40.0%
! GTGAATCGCTTTGGTTTCAT+CGG + chr1_1:57254021-57254040 Msa0030780:intron 40.0%
!!! GGTTTCATCGGTTTTTCTTC+CGG + chr1_1:57254033-57254052 Msa0030780:intron 40.0%
AAGAGTCGGTGATAGAAAAC+CGG - chr1_1:57254055-57254074 None:intergenic 40.0%
ATAAATGGTATTTGGGTGGG+TGG + chr1_1:57254405-57254424 Msa0030780:intron 40.0%
TAAATGGTATTTGGGTGGGT+GGG + chr1_1:57254406-57254425 Msa0030780:intron 40.0%
TCCACATGTCTCCTTCTTAA+GGG - chr1_1:57254444-57254463 None:intergenic 40.0%
TTCCACATGTCTCCTTCTTA+AGG - chr1_1:57254445-57254464 None:intergenic 40.0%
!! ATGAATAAGTGGGGTATTGC+GGG + chr1_1:57255042-57255061 Msa0030780:intron 40.0%
! TTTTTGAACTTAGGCTGCAG+CGG + chr1_1:57255186-57255205 Msa0030780:intron 40.0%
ATATCTCCACAGCACATACA+TGG - chr1_1:57255285-57255304 None:intergenic 40.0%
TTTGTTAGGCTTCCCTCAAT+GGG + chr1_1:57255391-57255410 Msa0030780:intron 40.0%
GTATAATCTTCCCCCATTGA+GGG - chr1_1:57255406-57255425 None:intergenic 40.0%
GGATGGAATCTTGTAGGAAT+AGG + chr1_1:57255444-57255463 Msa0030780:intron 40.0%
AGAGCCTCAATACAAGTGTA+AGG + chr1_1:57255585-57255604 Msa0030780:intron 40.0%
GAGCCTCAATACAAGTGTAA+GGG + chr1_1:57255586-57255605 Msa0030780:intron 40.0%
CAACCCTTACACTTGTATTG+AGG - chr1_1:57255592-57255611 None:intergenic 40.0%
! CAGTGATGATGTTGAAGACT+GGG + chr1_1:57256158-57256177 Msa0030780:CDS 40.0%
! GATGACTTGTGTTCTCTAGT+TGG - chr1_1:57256191-57256210 None:intergenic 40.0%
TAGTCCATGCCAATGGTTAT+GGG + chr1_1:57256223-57256242 Msa0030780:CDS 40.0%
! TTCGAGTTAATGGCAGAGAA+GGG + chr1_1:57256253-57256272 Msa0030780:CDS 40.0%
TCACATTTATGAGACCTGTC+CGG + chr1_1:57256492-57256511 Msa0030780:intron 40.0%
TGGCAGAAAAGTTAGTGTGA+TGG + chr1_1:57256756-57256775 Msa0030780:intron 40.0%
TTGCTCCATGCCATTATGAA+GGG + chr1_1:57256811-57256830 Msa0030780:CDS 40.0%
GATTTCCCTTCATAATGGCA+TGG - chr1_1:57256819-57256838 None:intergenic 40.0%
CCATGGATTTCCCTTCATAA+TGG - chr1_1:57256824-57256843 None:intergenic 40.0%
CCATTATGAAGGGAAATCCA+TGG + chr1_1:57256821-57256840 Msa0030780:CDS 40.0%
ATGAAGGGAAATCCATGGTA+TGG + chr1_1:57256826-57256845 Msa0030780:CDS 40.0%
AAATCCATGGTATGGTGAGT+GGG + chr1_1:57256834-57256853 Msa0030780:CDS 40.0%
! GGTGAGTGGGGATATAATTT+TGG + chr1_1:57256847-57256866 Msa0030780:CDS 40.0%
!!! TGGGGATATAATTTTGGCTC+TGG + chr1_1:57256853-57256872 Msa0030780:CDS 40.0%
GGTTATGTCATCAGACTTAG+AGG - chr1_1:57257091-57257110 None:intergenic 40.0%
!! ATAATCAAGAAGCTCTGGAG+AGG - chr1_1:57257271-57257290 None:intergenic 40.0%
AGGCAATAATCAAGAAGCTC+TGG - chr1_1:57257276-57257295 None:intergenic 40.0%
GAGGAAAAGTAGTCTATGGT+GGG + chr1_1:57257307-57257326 Msa0030780:CDS 40.0%
GATGGATCGAAACTTGATTC+TGG + chr1_1:57257573-57257592 Msa0030780:intron 40.0%
!! ATTCTGGAATCACTTTCACG+AGG + chr1_1:57257589-57257608 Msa0030780:intron 40.0%
!! TTCTGGAATCACTTTCACGA+GGG + chr1_1:57257590-57257609 Msa0030780:intron 40.0%
TTAATTAGGGGTCTGTTTGC+TGG + chr1_1:57257757-57257776 Msa0030780:intron 40.0%
CCTACGACAATGTCACATAA+TGG - chr1_1:57257849-57257868 None:intergenic 40.0%
CCATTATGTGACATTGTCGT+AGG + chr1_1:57257846-57257865 Msa0030780:intron 40.0%
TAGCGTAAGAAGGTTGGAAA+AGG - chr1_1:57258019-57258038 None:intergenic 40.0%
TACATCTAGCGTAAGAAGGT+TGG - chr1_1:57258025-57258044 None:intergenic 40.0%
TGCATACATCTAGCGTAAGA+AGG - chr1_1:57258029-57258048 None:intergenic 40.0%
ATGGCCAACAATAATTCTCC+AGG + chr1_1:57258263-57258282 Msa0030780:CDS 40.0%
TGAGCCTGGAGAATTATTGT+TGG - chr1_1:57258270-57258289 None:intergenic 40.0%
TGCAGGATATTCTCTTCAGA+AGG - chr1_1:57258299-57258318 None:intergenic 40.0%
AAGAACTCTTGCAATGAGCT+CGG + chr1_1:57258388-57258407 Msa0030780:CDS 40.0%
TTAGACAAATCTGACACTGG+CGG - chr1_1:57258467-57258486 None:intergenic 40.0%
TGGCTTCAGTATCTTCAGAT+TGG - chr1_1:57258523-57258542 None:intergenic 40.0%
ATGGGCAGCACAATTATTTC+TGG - chr1_1:57258554-57258573 None:intergenic 40.0%
AATCTTTAGGTCAGACACTG+TGG - chr1_1:57258582-57258601 None:intergenic 40.0%
! TGAAGCAGCAAAAGCTTTTC+AGG + chr1_1:57258601-57258620 Msa0030780:CDS 40.0%
TCCTAACAAGAACTTGACCT+GGG - chr1_1:57258696-57258715 None:intergenic 40.0%
ATCCTAACAAGAACTTGACC+TGG - chr1_1:57258697-57258716 None:intergenic 40.0%
GAAAATACTCCGGGAAGAAT+GGG + chr1_1:57258741-57258760 Msa0030780:CDS 40.0%
!! TGATGATGGAGAGAGAATGA+TGG + chr1_1:57258832-57258851 Msa0030780:CDS 40.0%
! ATGATGGCTTGTGATATGTG+TGG + chr1_1:57258848-57258867 Msa0030780:CDS 40.0%
GCATCTCGAACAAACAAAAC+GGG - chr1_1:57258927-57258946 None:intergenic 40.0%
GGCATCTCGAACAAACAAAA+CGG - chr1_1:57258928-57258947 None:intergenic 40.0%
CATGTAACTACCACTAGTTG+TGG - chr1_1:57259014-57259033 None:intergenic 40.0%
CACAACTAGTGGTAGTTACA+TGG + chr1_1:57259012-57259031 Msa0030780:CDS 40.0%
! GCATGCCTTGTTCATATTTC+AGG + chr1_1:57259160-57259179 Msa0030780:three_prime_UTR 40.0%
ATGGCAAGGCAAATTAGACC+GGG - chr1_1:57253309-57253328 None:intergenic 45.0%
GTTTACCGCCATAAATGGCA+AGG - chr1_1:57253323-57253342 None:intergenic 45.0%
AGCGAGTTTACCGCCATAAA+TGG - chr1_1:57253328-57253347 None:intergenic 45.0%
ATGGCGGTAAACTCGCTTAA+CGG + chr1_1:57253331-57253350 Msa0030780:five_prime_UTR 45.0%
AGTTGTGGATCTGAAAGGGA+GGG - chr1_1:57253575-57253594 None:intergenic 45.0%
GGAGAGTTGTGGATCTGAAA+GGG - chr1_1:57253579-57253598 None:intergenic 45.0%
TGGAGAGTTGTGGATCTGAA+AGG - chr1_1:57253580-57253599 None:intergenic 45.0%
GCCTGTAACCTCTTCTATCA+TGG + chr1_1:57253640-57253659 Msa0030780:exon 45.0%
GCTAACGACCATGATAGAAG+AGG - chr1_1:57253651-57253670 None:intergenic 45.0%
ATTAGAACGAAAAGGTCCGC+CGG - chr1_1:57253774-57253793 None:intergenic 45.0%
GGTTATTTGCCTTGACGTTG+TGG + chr1_1:57253919-57253938 Msa0030780:CDS 45.0%
CATCTTCTTCCACAACGTCA+AGG - chr1_1:57253931-57253950 None:intergenic 45.0%
!! TGTGATCAGTGCCGAGTTTT+TGG + chr1_1:57253974-57253993 Msa0030780:CDS 45.0%
!! TTTGGTGAGTTGACTCGGTT+CGG + chr1_1:57253992-57254011 Msa0030780:intron 45.0%
! CGGTTTTACGTGAATCGCTT+TGG + chr1_1:57254012-57254031 Msa0030780:intron 45.0%
TCCCTTAAGAAGGAGACATG+TGG + chr1_1:57254440-57254459 Msa0030780:intron 45.0%
AAAGCTGATGGGAGATCCAT+TGG + chr1_1:57255246-57255265 Msa0030780:CDS 45.0%
! TGGTTTGTGGTATCCACCAA+TGG - chr1_1:57255265-57255284 None:intergenic 45.0%
CACAGCACATACATGGTTTG+TGG - chr1_1:57255278-57255297 None:intergenic 45.0%
CACAAACCATGTATGTGCTG+TGG + chr1_1:57255276-57255295 Msa0030780:CDS 45.0%
CTTTGTTAGGCTTCCCTCAA+TGG + chr1_1:57255390-57255409 Msa0030780:intron 45.0%
TTGTTAGGCTTCCCTCAATG+GGG + chr1_1:57255392-57255411 Msa0030780:intron 45.0%
GGTATAATCTTCCCCCATTG+AGG - chr1_1:57255407-57255426 None:intergenic 45.0%
TATACCCAACCATCCCTCAA+TGG + chr1_1:57255421-57255440 Msa0030780:CDS 45.0%
ATACCCAACCATCCCTCAAT+GGG + chr1_1:57255422-57255441 Msa0030780:CDS 45.0%
CAAGATTCCATCCCCATTGA+GGG - chr1_1:57255437-57255456 None:intergenic 45.0%
ACAAGATTCCATCCCCATTG+AGG - chr1_1:57255438-57255457 None:intergenic 45.0%
CAATGGGGATGGAATCTTGT+AGG + chr1_1:57255438-57255457 Msa0030780:intron 45.0%
! GTCTTTTTGAACCTCTCCCT+TGG + chr1_1:57255831-57255850 Msa0030780:intron 45.0%
! GTCTTTTTGAACCTCTCCCT+TGG + chr1_1:57255831-57255850 Msa0030780:intron 45.0%
TTCTCCTCATGCTACATGAG+AGG + chr1_1:57255966-57255985 Msa0030780:intron 45.0%
TCTCCTCATGCTACATGAGA+GGG + chr1_1:57255967-57255986 Msa0030780:intron 45.0%
! CATCATCACTGGTTGTCACA+TGG - chr1_1:57256149-57256168 None:intergenic 45.0%
CCAGTCTTCAACATCATCAC+TGG - chr1_1:57256160-57256179 None:intergenic 45.0%
! CCAGTGATGATGTTGAAGAC+TGG + chr1_1:57256157-57256176 Msa0030780:CDS 45.0%
GACTTGTGTTCTCTAGTTGG+TGG - chr1_1:57256188-57256207 None:intergenic 45.0%
GTAGTCCATGCCAATGGTTA+TGG + chr1_1:57256222-57256241 Msa0030780:CDS 45.0%
!! AAGAAGGTGCCCATAACCAT+TGG - chr1_1:57256235-57256254 None:intergenic 45.0%
CTCTGCCATTAACTCGAAGA+AGG - chr1_1:57256251-57256270 None:intergenic 45.0%
! CTTCGAGTTAATGGCAGAGA+AGG + chr1_1:57256252-57256271 Msa0030780:CDS 45.0%
TCGAGTTAATGGCAGAGAAG+GGG + chr1_1:57256254-57256273 Msa0030780:CDS 45.0%
GGGGGATCTAGATATCTTTC+TGG + chr1_1:57256273-57256292 Msa0030780:CDS 45.0%
TAGCTCCAAGTGTCTTGCAT+AGG - chr1_1:57256326-57256345 None:intergenic 45.0%
TATGCAAGACACTTGGAGCT+AGG + chr1_1:57256325-57256344 Msa0030780:CDS 45.0%
AAGACACTTGGAGCTAGGTT+AGG + chr1_1:57256330-57256349 Msa0030780:intron 45.0%
TGCGGTGACATAGTGAAGAT+TGG + chr1_1:57256527-57256546 Msa0030780:intron 45.0%
CTTGCTCCATGCCATTATGA+AGG + chr1_1:57256810-57256829 Msa0030780:CDS 45.0%
GAAATCCATGGTATGGTGAG+TGG + chr1_1:57256833-57256852 Msa0030780:CDS 45.0%
AATCCATGGTATGGTGAGTG+GGG + chr1_1:57256835-57256854 Msa0030780:CDS 45.0%
TGGACAAGGGTAGATTGGAT+AGG - chr1_1:57256924-57256943 None:intergenic 45.0%
GAAGATGGACAAGGGTAGAT+TGG - chr1_1:57256929-57256948 None:intergenic 45.0%
ACATAACCTGCAAAAAGCGG+CGG + chr1_1:57257103-57257122 Msa0030780:CDS 45.0%
AAAGAGTGACGTTGAACGTG+TGG + chr1_1:57257158-57257177 Msa0030780:CDS 45.0%
!! TCTTAAGGGTGCTGTTTGCA+AGG + chr1_1:57257242-57257261 Msa0030780:CDS 45.0%
TATTGCCTTTCTGAACTGGG+AGG + chr1_1:57257288-57257307 Msa0030780:CDS 45.0%
! CTTTTCCTCCCAGTTCAGAA+AGG - chr1_1:57257296-57257315 None:intergenic 45.0%
CTGGGAGGAAAAGTAGTCTA+TGG + chr1_1:57257303-57257322 Msa0030780:CDS 45.0%
GGAGGAAAAGTAGTCTATGG+TGG + chr1_1:57257306-57257325 Msa0030780:CDS 45.0%
AGCAGATGCAATCCTCAAAC+TGG + chr1_1:57257339-57257358 Msa0030780:CDS 45.0%
TAAAAGGAGGTCATGCATGC+TGG + chr1_1:57257437-57257456 Msa0030780:intron 45.0%
!! GTTTCTGGCAGGTTCTCATT+TGG + chr1_1:57257647-57257666 Msa0030780:intron 45.0%
!! GGCAGCACAATTATTTCTGG+TGG - chr1_1:57258551-57258570 None:intergenic 45.0%
TAACAAGAACTTGACCTGGG+TGG - chr1_1:57258693-57258712 None:intergenic 45.0%
ACCCAGGTCAAGTTCTTGTT+AGG + chr1_1:57258692-57258711 Msa0030780:CDS 45.0%
! AATGAAGTGGTTTGTGTCCG+AGG + chr1_1:57258719-57258738 Msa0030780:CDS 45.0%
TGTGTCCGAGGAAAATACTC+CGG + chr1_1:57258731-57258750 Msa0030780:CDS 45.0%
!! TCTTCCCGGAGTATTTTCCT+CGG - chr1_1:57258739-57258758 None:intergenic 45.0%
GGAAAATACTCCGGGAAGAA+TGG + chr1_1:57258740-57258759 Msa0030780:CDS 45.0%
! TGGGTTGAGCAAGTTTCGAA+TGG + chr1_1:57258760-57258779 Msa0030780:CDS 45.0%
AGCAAGTTTCGAATGGAACG+TGG + chr1_1:57258767-57258786 Msa0030780:CDS 45.0%
CTTGTGATATGTGTGGTGTG+TGG + chr1_1:57258855-57258874 Msa0030780:CDS 45.0%
GACTCAAAGCTTAAATCGGG+TGG + chr1_1:57258956-57258975 Msa0030780:CDS 45.0%
CCAGTCTCTCATCTTTACAG+TGG - chr1_1:57258982-57259001 None:intergenic 45.0%
CCACTGTAAAGATGAGAGAC+TGG + chr1_1:57258979-57258998 Msa0030780:CDS 45.0%
GCTAGTGTTACCACAACTAG+TGG + chr1_1:57259001-57259020 Msa0030780:CDS 45.0%
!!! TTTTTTCAATAAATTTAAAT+AGG - chr1_1:57257730-57257749 None:intergenic 5.0%
!! AAAAAATAACAAATTAATTA+GGG + chr1_1:57257744-57257763 Msa0030780:intron 5.0%
GTTATGTGGGGGAGAGATAG+AGG - chr1_1:57253402-57253421 None:intergenic 50.0%
GGGAAGAGAGGATTAGGGTT+TGG - chr1_1:57253551-57253570 None:intergenic 50.0%
AGGGAGGGAAGAGAGGATTA+GGG - chr1_1:57253556-57253575 None:intergenic 50.0%
GAGTTGTGGATCTGAAAGGG+AGG - chr1_1:57253576-57253595 None:intergenic 50.0%
TCTATCATGGTCGTTAGCGG+AGG + chr1_1:57253653-57253672 Msa0030780:exon 50.0%
ACGTCAAGGCAAATAACCGC+CGG - chr1_1:57253917-57253936 None:intergenic 50.0%
GGAGACATGTGGAAGAGCAA+TGG + chr1_1:57254451-57254470 Msa0030780:intron 50.0%
AAGAGCAATGGAGTGACACG+TGG + chr1_1:57254463-57254482 Msa0030780:intron 50.0%
! TTGGTGGACATCCCTTTGCA+GGG - chr1_1:57255082-57255101 None:intergenic 50.0%
! ATTGGTGGACATCCCTTTGC+AGG - chr1_1:57255083-57255102 None:intergenic 50.0%
! TGGTAACGCTTACTGCACAC+TGG - chr1_1:57255216-57255235 None:intergenic 50.0%
TGTTAGGCTTCCCTCAATGG+GGG + chr1_1:57255393-57255412 Msa0030780:intron 50.0%
TACCCAACCATCCCTCAATG+GGG + chr1_1:57255423-57255442 Msa0030780:CDS 50.0%
ATCCCCATTGAGGGATGGTT+GGG - chr1_1:57255428-57255447 None:intergenic 50.0%
ATTCCATCCCCATTGAGGGA+TGG - chr1_1:57255433-57255452 None:intergenic 50.0%
! ATGTTTGTTGGTCTGGGGTG+TGG + chr1_1:57255808-57255827 Msa0030780:intron 50.0%
! TGTTTGTTGGTCTGGGGTGT+GGG + chr1_1:57255809-57255828 Msa0030780:intron 50.0%
CTACCCTCTCATGTAGCATG+AGG - chr1_1:57255973-57255992 None:intergenic 50.0%
CATGGTGTAGTCCATGCCAA+TGG + chr1_1:57256216-57256235 Msa0030780:CDS 50.0%
! GGGCACCTTCTTCGAGTTAA+TGG + chr1_1:57256243-57256262 Msa0030780:CDS 50.0%
CGAGTTAATGGCAGAGAAGG+GGG + chr1_1:57256255-57256274 Msa0030780:CDS 50.0%
GATCGCCTATGCAAGACACT+TGG + chr1_1:57256318-57256337 Msa0030780:CDS 50.0%
TATCCCCACTCACCATACCA+TGG - chr1_1:57256841-57256860 None:intergenic 50.0%
TGGCAGCTATTGTCTCACAC+AGG + chr1_1:57256873-57256892 Msa0030780:CDS 50.0%
TGGGAGAGGAAGATGGACAA+GGG - chr1_1:57256937-57256956 None:intergenic 50.0%
TGAGTGAGGCTTCTGTTCCT+GGG - chr1_1:57256956-57256975 None:intergenic 50.0%
ATATCCTGCACACGTGAGTG+AGG - chr1_1:57256970-57256989 None:intergenic 50.0%
GCTCATGCTCTGACAAAGAC+CGG - chr1_1:57257005-57257024 None:intergenic 50.0%
!!! ATCAATCCGCCGCTTTTTGC+AGG - chr1_1:57257112-57257131 None:intergenic 50.0%
GGCAGTGTCTGGGTCTAATT+GGG + chr1_1:57257206-57257225 Msa0030780:CDS 50.0%
TCTGGGTCTAATTGGGTGAG+TGG + chr1_1:57257213-57257232 Msa0030780:CDS 50.0%
GTGAGTGGTCGAGCTCTTAA+GGG + chr1_1:57257228-57257247 Msa0030780:CDS 50.0%
!! TAAGGGTGCTGTTTGCAAGG+TGG + chr1_1:57257245-57257264 Msa0030780:CDS 50.0%
TGGAATCACTTTCACGAGGG+TGG + chr1_1:57257593-57257612 Msa0030780:intron 50.0%
GAGGTTGAGCCCTGAAATAG+TGG + chr1_1:57258079-57258098 Msa0030780:intron 50.0%
ACGACTCTCTGCTTCATCCT+TGG + chr1_1:57258336-57258355 Msa0030780:CDS 50.0%
TCAGACACTGTGGCGTTCAT+GGG - chr1_1:57258572-57258591 None:intergenic 50.0%
GACGAACTAGTTGGCTACAG+CGG + chr1_1:57258656-57258675 Msa0030780:CDS 50.0%
GTGTCCGAGGAAAATACTCC+GGG + chr1_1:57258732-57258751 Msa0030780:CDS 50.0%
CTTGCTCAACCCATTCTTCC+CGG - chr1_1:57258753-57258772 None:intergenic 50.0%
GAATGGAACGTGGACTTGAG+AGG + chr1_1:57258777-57258796 Msa0030780:CDS 50.0%
TGTGGGGCTAAGGATGATGA+TGG + chr1_1:57258818-57258837 Msa0030780:CDS 50.0%
GTGATATGTGTGGTGTGTGG+CGG + chr1_1:57258858-57258877 Msa0030780:CDS 50.0%
!! CAAACAAAACGGGCTGGAAC+AGG - chr1_1:57258917-57258936 None:intergenic 50.0%
CTCGAACAAACAAAACGGGC+TGG - chr1_1:57258923-57258942 None:intergenic 50.0%
!! AGATAGGCATTGGTGGGACA+GGG + chr1_1:57259138-57259157 Msa0030780:three_prime_UTR 50.0%
GATAGAGGAGGAGAGGAGAG+TGG - chr1_1:57253387-57253406 None:intergenic 55.0%
ATGTGGGGGAGAGATAGAGG+AGG - chr1_1:57253399-57253418 None:intergenic 55.0%
GAGGGAGGGAAGAGAGGATT+AGG - chr1_1:57253557-57253576 None:intergenic 55.0%
GTGGATCTGAAAGGGAGGGA+GGG - chr1_1:57253571-57253590 None:intergenic 55.0%
TGTGGATCTGAAAGGGAGGG+AGG - chr1_1:57253572-57253591 None:intergenic 55.0%
GAGATCTCGGTGGAGAGTTG+TGG - chr1_1:57253590-57253609 None:intergenic 55.0%
TAGAAGAGGTTACAGGCGCG+TGG - chr1_1:57253637-57253656 None:intergenic 55.0%
!! GAAACTCTCTGAAGCGGCGA+GGG - chr1_1:57253750-57253769 None:intergenic 55.0%
!! AGAAACTCTCTGAAGCGGCG+AGG - chr1_1:57253751-57253770 None:intergenic 55.0%
GCCGCTTCAGAGAGTTTCTC+CGG + chr1_1:57253752-57253771 Msa0030780:CDS 55.0%
! GCCGGAGAAACTCTCTGAAG+CGG - chr1_1:57253756-57253775 None:intergenic 55.0%
GCTTCAGAGAGTTTCTCCGG+CGG + chr1_1:57253755-57253774 Msa0030780:CDS 55.0%
AAGTGCGGAAACAACGCGGA+AGG - chr1_1:57253836-57253855 None:intergenic 55.0%
CAGCAAGTGCGGAAACAACG+CGG - chr1_1:57253840-57253859 None:intergenic 55.0%
! TGTTTCCGCACTTGCTGACG+TGG + chr1_1:57253843-57253862 Msa0030780:CDS 55.0%
ATCTGCCACGTCAGCAAGTG+CGG - chr1_1:57253851-57253870 None:intergenic 55.0%
TGGCAGATCCTCTTCCGTGT+CGG + chr1_1:57253863-57253882 Msa0030780:CDS 55.0%
TGATCTCACCGACACGGAAG+AGG - chr1_1:57253874-57253893 None:intergenic 55.0%
CATCGGTGATCTCACCGACA+CGG - chr1_1:57253880-57253899 None:intergenic 55.0%
! GTGTCGGTGAGATCACCGAT+GGG + chr1_1:57253879-57253898 Msa0030780:CDS 55.0%
TGTCGGTGAGATCACCGATG+GGG + chr1_1:57253880-57253899 Msa0030780:CDS 55.0%
GATCACCGATGGGGGTGAAT+CGG + chr1_1:57253889-57253908 Msa0030780:CDS 55.0%
ATCACCGATGGGGGTGAATC+GGG + chr1_1:57253890-57253909 Msa0030780:CDS 55.0%
ATGGTATTTGGGTGGGTGGG+TGG + chr1_1:57254409-57254428 Msa0030780:intron 55.0%
TGGTATTTGGGTGGGTGGGT+GGG + chr1_1:57254410-57254429 Msa0030780:intron 55.0%
GAACTTGTGCCCCCTGCAAA+GGG + chr1_1:57255068-57255087 Msa0030780:intron 55.0%
! TGGTGGACATCCCTTTGCAG+GGG - chr1_1:57255081-57255100 None:intergenic 55.0%
GCTGATGGGAGATCCATTGG+TGG + chr1_1:57255249-57255268 Msa0030780:CDS 55.0%
CATCCCCATTGAGGGATGGT+TGG - chr1_1:57255429-57255448 None:intergenic 55.0%
CAACCATCCCTCAATGGGGA+TGG + chr1_1:57255427-57255446 Msa0030780:CDS 55.0%
ACAGCTAGTGAAGAAGCGGC+TGG + chr1_1:57255866-57255885 Msa0030780:intron 55.0%
CAGCTAGTGAAGAAGCGGCT+GGG + chr1_1:57255867-57255886 Msa0030780:intron 55.0%
AGCTAGTGAAGAAGCGGCTG+GGG + chr1_1:57255868-57255887 Msa0030780:intron 55.0%
GGTGCCCATAACCATTGGCA+TGG - chr1_1:57256230-57256249 None:intergenic 55.0%
CTGGGAGAGGAAGATGGACA+AGG - chr1_1:57256938-57256957 None:intergenic 55.0%
CTTGTCCATCTTCCTCTCCC+AGG + chr1_1:57256936-57256955 Msa0030780:CDS 55.0%
CTGTTCCTGGGAGAGGAAGA+TGG - chr1_1:57256944-57256963 None:intergenic 55.0%
GTGAGTGAGGCTTCTGTTCC+TGG - chr1_1:57256957-57256976 None:intergenic 55.0%
!! AAGCGGCGGATTGATGCTTC+TGG + chr1_1:57257117-57257136 Msa0030780:CDS 55.0%
GAGTGACGTTGAACGTGTGG+AGG + chr1_1:57257161-57257180 Msa0030780:CDS 55.0%
!! AAGCCATGCTCAGAGTGCTG+CGG + chr1_1:57257184-57257203 Msa0030780:CDS 55.0%
GGGCAGTGTCTGGGTCTAAT+TGG + chr1_1:57257205-57257224 Msa0030780:CDS 55.0%
GGTGAGTGGTCGAGCTCTTA+AGG + chr1_1:57257227-57257246 Msa0030780:CDS 55.0%
GTCAGACACTGTGGCGTTCA+TGG - chr1_1:57258573-57258592 None:intergenic 55.0%
CGGTGTAGAAGATTCCACCC+AGG + chr1_1:57258676-57258695 Msa0030780:CDS 55.0%
TGGAACGTGGACTTGAGAGG+TGG + chr1_1:57258780-57258799 Msa0030780:CDS 55.0%
TGGACTGTCGAGTGCAACTG+TGG + chr1_1:57258800-57258819 Msa0030780:CDS 55.0%
GGACTGTCGAGTGCAACTGT+GGG + chr1_1:57258801-57258820 Msa0030780:CDS 55.0%
GACTGTCGAGTGCAACTGTG+GGG + chr1_1:57258802-57258821 Msa0030780:CDS 55.0%
! TGGCGGCACACTAGGTGTTT+TGG + chr1_1:57258875-57258894 Msa0030780:CDS 55.0%
GCTGGAACAGGAGCAGTATC+AGG - chr1_1:57258905-57258924 None:intergenic 55.0%
!! CAGATAGGCATTGGTGGGAC+AGG + chr1_1:57259137-57259156 Msa0030780:three_prime_UTR 55.0%
GGGGAGAGATAGAGGAGGAG+AGG - chr1_1:57253394-57253413 None:intergenic 60.0%
GAAAGGGAGGGAGGGAAGAG+AGG - chr1_1:57253563-57253582 None:intergenic 60.0%
TGGCGCGTGAGGTGAGATCT+CGG - chr1_1:57253603-57253622 None:intergenic 60.0%
ACCTCACGCGCCACCAAAAC+TGG + chr1_1:57253610-57253629 Msa0030780:five_prime_UTR 60.0%
!!! TCCAGTTTTGGTGGCGCGTG+AGG - chr1_1:57253614-57253633 None:intergenic 60.0%
! ACAGGCGCGTGGTCCAGTTT+TGG - chr1_1:57253626-57253645 None:intergenic 60.0%
AAGCGGCGAGGGATGGTGAA+GGG - chr1_1:57253739-57253758 None:intergenic 60.0%
! CGGTGGAAGAAGCGCGTACT+TGG - chr1_1:57253813-57253832 None:intergenic 60.0%
TGCGGAAACAACGCGGAAGG+CGG - chr1_1:57253833-57253852 None:intergenic 60.0%
! CGTGTCGGTGAGATCACCGA+TGG + chr1_1:57253878-57253897 Msa0030780:CDS 60.0%
GTCGGTGAGATCACCGATGG+GGG + chr1_1:57253881-57253900 Msa0030780:CDS 60.0%
TATTTGGGTGGGTGGGTGGG+TGG + chr1_1:57254413-57254432 Msa0030780:intron 60.0%
!! GGGTGGTGGGTCCCTTAAGA+AGG + chr1_1:57254430-57254449 Msa0030780:intron 60.0%
CGAACTTGTGCCCCCTGCAA+AGG + chr1_1:57255067-57255086 Msa0030780:intron 60.0%
GGTGGACATCCCTTTGCAGG+GGG - chr1_1:57255080-57255099 None:intergenic 60.0%
TGAAGAAGCGGCTGGGGTGT+GGG + chr1_1:57255874-57255893 Msa0030780:intron 60.0%
CAAGTCAGTGACAGCCGGAC+AGG - chr1_1:57256509-57256528 None:intergenic 60.0%
!! GTCCGGCTGTCACTGACTTG+CGG + chr1_1:57256509-57256528 Msa0030780:intron 60.0%
CACCGCAAGTCAGTGACAGC+CGG - chr1_1:57256514-57256533 None:intergenic 60.0%
GAGGCTTCTGTTCCTGGGAG+AGG - chr1_1:57256951-57256970 None:intergenic 60.0%
GAAGCCTCACTCACGTGTGC+AGG + chr1_1:57256963-57256982 Msa0030780:CDS 60.0%
!! AGCCATGCTCAGAGTGCTGC+GGG + chr1_1:57257185-57257204 Msa0030780:CDS 60.0%
CGAGTGCAACTGTGGGGCTA+AGG + chr1_1:57258808-57258827 Msa0030780:CDS 60.0%
CGCGTGAGGTGAGATCTCGG+TGG - chr1_1:57253600-57253619 None:intergenic 65.0%
!! GGCGCGTGGTCCAGTTTTGG+TGG - chr1_1:57253623-57253642 None:intergenic 65.0%
GAAGCGGCGAGGGATGGTGA+AGG - chr1_1:57253740-57253759 None:intergenic 65.0%
!! CTCTCTGAAGCGGCGAGGGA+TGG - chr1_1:57253746-57253765 None:intergenic 65.0%
GGAAACAACGCGGAAGGCGG+TGG - chr1_1:57253830-57253849 None:intergenic 65.0%
CGGTCCCGATTCACCCCCAT+CGG - chr1_1:57253897-57253916 None:intergenic 65.0%
CGATGGGGGTGAATCGGGAC+CGG + chr1_1:57253895-57253914 Msa0030780:CDS 65.0%
GTGAAGAAGCGGCTGGGGTG+TGG + chr1_1:57255873-57255892 Msa0030780:intron 65.0%
TGCCCGCAGCACTCTGAGCA+TGG - chr1_1:57257190-57257209 None:intergenic 65.0%
!! AGAGTGCTGCGGGCAGTGTC+TGG + chr1_1:57257195-57257214 Msa0030780:CDS 65.0%
! GAGTGCTGCGGGCAGTGTCT+GGG + chr1_1:57257196-57257215 Msa0030780:CDS 65.0%
GTGGTGTGTGGCGGCACACT+AGG + chr1_1:57258867-57258886 Msa0030780:CDS 65.0%
TGGGGGTGAATCGGGACCGG+CGG + chr1_1:57253898-57253917 Msa0030780:CDS 70.0%
TTGGGTGGGTGGGTGGGTGG+TGG + chr1_1:57254416-57254435 Msa0030780:intron 70.0%
TGGGTGGGTGGGTGGGTGGT+GGG + chr1_1:57254417-57254436 Msa0030780:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57253291 57259238 57253291 ID=Msa0030780;Name=Msa0030780
chr1_1 mRNA 57253291 57259238 57253291 ID=Msa0030780-mRNA-1;Parent=Msa0030780;Name=Msa0030780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=368|0.6|0.83|0.83|1|1|6|169|726
chr1_1 exon 57253291 57253995 57253291 ID=Msa0030780-mRNA-1:exon:17253;Parent=Msa0030780-mRNA-1
chr1_1 exon 57255199 57255325 57255199 ID=Msa0030780-mRNA-1:exon:17254;Parent=Msa0030780-mRNA-1
chr1_1 exon 57255399 57255455 57255399 ID=Msa0030780-mRNA-1:exon:17255;Parent=Msa0030780-mRNA-1
chr1_1 exon 57256131 57256346 57256131 ID=Msa0030780-mRNA-1:exon:17256;Parent=Msa0030780-mRNA-1
chr1_1 exon 57256762 57257376 57256762 ID=Msa0030780-mRNA-1:exon:17257;Parent=Msa0030780-mRNA-1
chr1_1 exon 57258241 57259238 57258241 ID=Msa0030780-mRNA-1:exon:17258;Parent=Msa0030780-mRNA-1
chr1_1 five_prime_UTR 57253291 57253658 57253291 ID=Msa0030780-mRNA-1:five_prime_utr;Parent=Msa0030780-mRNA-1
chr1_1 CDS 57253659 57253995 57253659 ID=Msa0030780-mRNA-1:cds;Parent=Msa0030780-mRNA-1
chr1_1 CDS 57255199 57255325 57255199 ID=Msa0030780-mRNA-1:cds;Parent=Msa0030780-mRNA-1
chr1_1 CDS 57255399 57255455 57255399 ID=Msa0030780-mRNA-1:cds;Parent=Msa0030780-mRNA-1
chr1_1 CDS 57256131 57256346 57256131 ID=Msa0030780-mRNA-1:cds;Parent=Msa0030780-mRNA-1
chr1_1 CDS 57256762 57257376 57256762 ID=Msa0030780-mRNA-1:cds;Parent=Msa0030780-mRNA-1
chr1_1 CDS 57258241 57259069 57258241 ID=Msa0030780-mRNA-1:cds;Parent=Msa0030780-mRNA-1
chr1_1 three_prime_UTR 57259070 57259238 57259070 ID=Msa0030780-mRNA-1:three_prime_utr;Parent=Msa0030780-mRNA-1
Gene Sequence

>Msa0030780

ATGGTCGTTAGCGGAGGCAAATCCTTAAAACGTATGAAAAGAAGAGTCACCGCCGATTACCACGATTTCTTTTCATTCCCTTCACCATCCCTCGCCGCTTCAGAGAGTTTCTCCGGCGGACCTTTTCGTTCTAATGTTCACTCTTTTCTCACCAAGTACGCGCTTCTTCCACCGCCTTCCGCGTTGTTTCCGCACTTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGATGGGGGTGAATCGGGACCGGCGGTTATTTGCCTTGACGTTGTGGAAGAAGATGTTGCTAGATCCAGATCTGTGTATTGTGATCAGTGCCGAGTTTTTGGCTGCAGCGGAAATCCAGTGTGCAGTAAGCGTTACCATTTTATAATCAAAGCTGATGGGAGATCCATTGGTGGATACCACAAACCATGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGCTTCCCTCAATGGGGGAAGATTATACCCAACCATCCCTCAATGGGGATGGAATCTTGTGCAAGTCATGTAACCATGTGACAACCAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGAGTTAATGGCAGAGAAGGGGGATCTAGATATCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGCTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATACGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGAAATCCATGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGCAGCTATTGTCTCACACAGGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCATCTTCCTCTCCCAGGAACAGAAGCCTCACTCACGTGTGCAGGATATGATTTTGTATTACCGGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGTTGCATGATGCTCGCAAGACAGCCTCTAAGTCTGATGACATAACCTGCAAAAAGCGGCGGATTGATGCTTCTGGATTATCAAGTTCTTGGGAAAAGAGTGACGTTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGGGCAGTGTCTGGGTCTAATTGGGTGAGTGGTCGAGCTCTTAAGGGTGCTGTTTGCAAGGTGGCCTCTCCAGAGCTTCTTGATTATTGCCTTTCTGAACTGGGAGGAAAAGTAGTCTATGGTGGGATTGTTAATAGCAGATGCAATCCTCAAACTGGAGTGTATGAATTCAGGATTGATGCTACAAATGTTTTTATGGCCAACAATAATTCTCCAGGCTCAAAGTGTCCTTCTGAAGAGAATATCCTGCAATGCTTGAGATATTTATACGACTCTCTGCTTCATCCTTGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCTCAGAAGCTTCTTGACTGCAAGCAATTAATAAAAGATTATTGCTCTGAGATGCCGCCAGTGTCAGATTTGTCTAAATTACGTATCTCATGTCAGGTTGAACTAGTTGACCAATCTGAAGATACTGAAGCCAAAATTCCACCAGAAATAATTGTGCTGCCCATGAACGCCACAGTGTCTGACCTAAAGATTGAAGCAGCAAAAGCTTTTCAGGAAGTATATCTAATGTTTAGAAAATTTCAAGTTGACGAACTAGTTGGCTACAGCGGTGTAGAAGATTCCACCCAGGTCAAGTTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATACTCCGGGAAGAATGGGTTGAGCAAGTTTCGAATGGAACGTGGACTTGAGAGGTGGACTGTCGAGTGCAACTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATATGTGTGGTGTGTGGCGGCACACTAGGTGTTTTGGCATTCCTGATACTGCTCCTGTTCCAGCCCGTTTTGTTTGTTCGAGATGCCAAAACTGTGACTCAAAGCTTAAATCGGGTGGCCACTGTAAAGATGAGAGACTGGCTAGTGTTACCACAACTAGTGGTAGTTACATGGGAAACAGCTTTTCAGTGCCTTCTAATATTCGTTAA
Protein sequence

>Msa0030780

MVVSGGKSLKRMKRRVTADYHDFFSFPSPSLAASESFSGGPFRSNVHSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGGESGPAVICLDVVEEDVARSRSVYCDQCRVFGCSGNPVCSKRYHFIIKADGRSIGGYHKPCMCCGDILHLSESKLPSMGEDYTQPSLNGDGILCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGARKVSVMDVSKKYGLEYRLLHAIMKGNPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYRSLSEHELVNMRDLFCFLMGLLHDARKTASKSDDITCKKRRIDASGLSSSWEKSDVERVEEAMLRVLRAVSGSNWVSGRALKGAVCKVASPELLDYCLSELGGKVVYGGIVNSRCNPQTGVYEFRIDATNVFMANNNSPGSKCPSEENILQCLRYLYDSLLHPWMMLNYVDEETRTLAMSSAQKLLDCKQLIKDYCSEMPPVSDLSKLRISCQVELVDQSEDTEAKIPPEIIVLPMNATVSDLKIEAAKAFQEVYLMFRKFQVDELVGYSGVEDSTQVKFLLGSNEVVCVRGKYSGKNGLSKFRMERGLERWTVECNCGAKDDDGERMMACDMCGVWRHTRCFGIPDTAPVPARFVCSRCQNCDSKLKSGGHCKDERLASVTTTSGSYMGNSFSVPSNIR*