AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170750 MtrunA17_Chr1g0188421 96.460 565 20 0 143 707 1 565 0.0 1132
Msa0170750 MtrunA17_Chr4g0017901 49.499 699 331 10 2 687 1 690 0.0 675
Msa0170750 MtrunA17_Chr5g0434341 30.696 733 372 20 13 672 35 704 1.75e-91 301
Msa0170750 MtrunA17_Chr1g0188411 99.115 113 1 0 1 113 1 113 3.46e-74 235
Msa0170750 MtrunA17_Chr5g0417171 27.790 457 294 13 240 669 1 448 5.23e-50 181
Msa0170750 MtrunA17_Chr5g0417181 57.407 54 22 1 176 229 11 63 8.48e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170750 AT1G33420.1 49.574 704 311 19 2 693 3 674 0.0 657
Msa0170750 AT1G33420.2 50.085 589 255 15 113 693 12 569 0.0 559
Msa0170750 AT5G22260.1 29.665 627 364 17 86 674 78 665 5.78e-84 279
Msa0170750 AT1G66170.1 31.397 637 333 18 83 667 69 653 7.18e-82 275
Msa0170750 AT2G01810.1 27.611 699 381 20 39 667 39 682 6.93e-74 253
Msa0170750 AT2G07714.1 34.746 118 74 1 214 328 1 118 1.53e-20 90.5
Msa0170750 ATMG00550.1 31.522 92 60 1 240 328 1 92 9.02e-12 64.3

Find 238 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCTTGTTCATATTTC+AGG 0.121731 1_4:+55093794 Msa0170750:three_prime_UTR
AATTATTTCTGGTGGAATTT+TGG 0.142354 1_4:-55093174 None:intergenic
CTAATTTGCCTTGCCATTTA+TGG 0.151482 1_4:+55087903 Msa0170750:five_prime_UTR
TAGACCGGGCTTCTTTATTT+TGG 0.164988 1_4:-55087883 None:intergenic
GTTGCCATATTATGGATTTC+TGG 0.176048 1_4:+55090928 Msa0170750:CDS
TCTTTCTGGTTGCCATATTA+TGG 0.177159 1_4:+55090920 Msa0170750:CDS
AGAGTGCTGCGGGCAGTGTC+TGG 0.207906 1_4:+55091828 Msa0170750:CDS
GTGAGTGAGGCTTCTGTTCC+TGG 0.237167 1_4:-55091587 None:intergenic
GGTGAGTGGGGATATAATTT+TGG 0.242939 1_4:+55091480 Msa0170750:CDS
ACCTCACGCGCCACCAAAAC+TGG 0.247755 1_4:+55088200 Msa0170750:five_prime_UTR
AATGCCTATCTGTTATTTAC+AGG 0.248478 1_4:-55093760 None:intergenic
TGTTATTTACAGGCTATTTC+AGG 0.254200 1_4:-55093750 None:intergenic
TGATTATTGCCTTTCTGAAC+TGG 0.256477 1_4:+55091917 Msa0170750:CDS
CATCAGCTTTGATTATAAAA+TGG 0.259538 1_4:-55089864 None:intergenic
GGGCACCTTCTTCGAGTTAA+TGG 0.259647 1_4:+55090876 Msa0170750:CDS
GGGCAGTGTCTGGGTCTAAT+TGG 0.261350 1_4:+55091838 Msa0170750:CDS
ATGGGCAGCACAATTATTTC+TGG 0.273746 1_4:-55093185 None:intergenic
GAGGGAGGGAAGAGAGGATT+AGG 0.296865 1_4:-55088144 None:intergenic
CTTCTGGATTATCAAGTTCT+TGG 0.299672 1_4:+55091766 Msa0170750:CDS
AGCGAGTTTACCGCCATAAA+TGG 0.321471 1_4:-55087916 None:intergenic
AAGCGGCGGATTGATGCTTC+TGG 0.330006 1_4:+55091750 Msa0170750:CDS
CTGTGACTCAAAGCTTAAAT+CGG 0.333227 1_4:+55093586 Msa0170750:CDS
GGTGAGTGGTCGAGCTCTTA+AGG 0.337486 1_4:+55091860 Msa0170750:CDS
GAAGATGGACAAGGGTAGAT+TGG 0.339049 1_4:-55091559 None:intergenic
TTGCCATATTATGGATTTCT+GGG 0.346640 1_4:+55090929 Msa0170750:CDS
TTCTGTACATACAAACAAAT+GGG 0.351608 1_4:+55093836 Msa0170750:three_prime_UTR
GTCAGACACTGTGGCGTTCA+TGG 0.360223 1_4:-55093204 None:intergenic
GATCCCAGAAATCCATAATA+TGG 0.360486 1_4:-55090932 None:intergenic
AGGGAGGGAAGAGAGGATTA+GGG 0.362633 1_4:-55088143 None:intergenic
ACAGGCGCGTGGTCCAGTTT+TGG 0.362719 1_4:-55088213 None:intergenic
CTTCTGTACATACAAACAAA+TGG 0.364173 1_4:+55093835 Msa0170750:three_prime_UTR
ACCCAGGTCAAGTTCTTGTT+AGG 0.368519 1_4:+55093326 Msa0170750:CDS
CTTGCTCAACCCATTCTTCC+CGG 0.379282 1_4:-55093384 None:intergenic
TAAGCTTTGAGTCACAGTTT+TGG 0.381961 1_4:-55093580 None:intergenic
GGTTTGGTTATTGAGTTTGA+TGG 0.387099 1_4:-55088122 None:intergenic
CCATGGATTTCCCTTCATAA+TGG 0.392563 1_4:-55091454 None:intergenic
GGAAAATACTCCGGGAAGAA+TGG 0.394505 1_4:+55093374 Msa0170750:CDS
AGCAGATGCAATCCTCAAAC+TGG 0.397969 1_4:+55091972 Msa0170750:CDS
GGGAAGAGAGGATTAGGGTT+TGG 0.399226 1_4:-55088138 None:intergenic
CAAACAAAACGGGCTGGAAC+AGG 0.401043 1_4:-55093548 None:intergenic
ATGGCGGTAAACTCGCTTAA+CGG 0.404145 1_4:+55087922 Msa0170750:five_prime_UTR
TATTCTTCTTGTATGTTATG+TGG 0.405748 1_4:-55088004 None:intergenic
ATAAATATCTCAAGCATTGC+AGG 0.407912 1_4:-55092947 None:intergenic
GCTGGAACAGGAGCAGTATC+AGG 0.408996 1_4:-55093536 None:intergenic
ACGACTCTCTGCTTCATCCT+TGG 0.409786 1_4:+55092970 Msa0170750:CDS
CACAACTAGTGGTAGTTACA+TGG 0.412758 1_4:+55093646 Msa0170750:CDS
CAGATAGGCATTGGTGGGAC+AGG 0.414785 1_4:+55093771 Msa0170750:three_prime_UTR
TCAGAAGGACGCTTTGAGCC+TGG 0.415981 1_4:-55092915 None:intergenic
TGGCGGCACACTAGGTGTTT+TGG 0.417600 1_4:+55093509 Msa0170750:CDS
GGTTATGTCATCAGACTTAG+AGG 0.417691 1_4:-55091721 None:intergenic
AATTCATACACTCCAGTTTG+AGG 0.420254 1_4:-55091984 None:intergenic
TGGTTGTCGTTGGATTAATC+TGG 0.420681 1_4:-55088102 None:intergenic
TTCTGGATTATCAAGTTCTT+GGG 0.428561 1_4:+55091767 Msa0170750:CDS
GTAGTCCATGCCAATGGTTA+TGG 0.431968 1_4:+55090855 Msa0170750:CDS
TGAAAAGAAATCGTGGTAAT+CGG 0.432279 1_4:-55088301 None:intergenic
CTGGGAGGAAAAGTAGTCTA+TGG 0.434257 1_4:+55091936 Msa0170750:CDS
GAGTGCTGCGGGCAGTGTCT+GGG 0.436397 1_4:+55091829 Msa0170750:CDS
AAACTGGAGTGTATGAATTC+AGG 0.437264 1_4:+55091988 Msa0170750:CDS
ATTCTTCTTGTATGTTATGT+GGG 0.439979 1_4:-55088003 None:intergenic
GTGAGTGGTCGAGCTCTTAA+GGG 0.441244 1_4:+55091861 Msa0170750:CDS
GGCAGTGTCTGGGTCTAATT+GGG 0.443159 1_4:+55091839 Msa0170750:CDS
TGGCTTCAGTATCTTCAGAT+TGG 0.443173 1_4:-55093154 None:intergenic
AGCATGAGCTTGTAAATATG+AGG 0.447036 1_4:+55091649 Msa0170750:CDS
TAGTCCATGCCAATGGTTAT+GGG 0.447768 1_4:+55090856 Msa0170750:CDS
AGGCAATAATCAAGAAGCTC+TGG 0.453831 1_4:-55091906 None:intergenic
GAAAGGGAGGGAGGGAAGAG+AGG 0.456348 1_4:-55088150 None:intergenic
ATGGATGTTTCGAAGAAATA+CGG 0.460142 1_4:+55091408 Msa0170750:CDS
ATAACTTAACGAATATTAGA+AGG 0.463341 1_4:-55093686 None:intergenic
TTTCAAGTTGACGAACTAGT+TGG 0.465947 1_4:+55093281 Msa0170750:CDS
GATTATTGCCTTTCTGAACT+GGG 0.470034 1_4:+55091918 Msa0170750:CDS
GGCATCTCGAACAAACAAAA+CGG 0.474585 1_4:-55093559 None:intergenic
TAAATTACGTATCTCATGTC+AGG 0.475811 1_4:+55093118 Msa0170750:CDS
ATGGCCAACAATAATTCTCC+AGG 0.475823 1_4:+55092897 Msa0170750:CDS
CGGTGGAAGAAGCGCGTACT+TGG 0.477965 1_4:-55088400 None:intergenic
GATAGAGGAGGAGAGGAGAG+TGG 0.483741 1_4:-55087975 None:intergenic
TGATCTCACCGACACGGAAG+AGG 0.494276 1_4:-55088461 None:intergenic
AAATCCATGGTATGGTGAGT+GGG 0.494538 1_4:+55091467 Msa0170750:CDS
GATGACTTGTGTTCTCTAGT+TGG 0.495311 1_4:-55090821 None:intergenic
GTGGTGTGTGGCGGCACACT+AGG 0.496354 1_4:+55093501 Msa0170750:CDS
GCATCTCGAACAAACAAAAC+GGG 0.498064 1_4:-55093558 None:intergenic
CTGATCACAATACACAGATC+TGG 0.501969 1_4:-55088550 None:intergenic
GTGGATCTGAAAGGGAGGGA+GGG 0.502445 1_4:-55088158 None:intergenic
TGAGCCTGGAGAATTATTGT+TGG 0.504253 1_4:-55092901 None:intergenic
CACAGCACATACATGGTTTG+TGG 0.505639 1_4:-55089906 None:intergenic
ATAGCCTGTAAATAACAGAT+AGG 0.506489 1_4:+55093756 Msa0170750:three_prime_UTR
GAAAATACTCCGGGAAGAAT+GGG 0.508237 1_4:+55093375 Msa0170750:CDS
TCTTAAGGGTGCTGTTTGCA+AGG 0.508491 1_4:+55091875 Msa0170750:CDS
CTTCGAGTTAATGGCAGAGA+AGG 0.508940 1_4:+55090885 Msa0170750:CDS
CTGTTCCTGGGAGAGGAAGA+TGG 0.508967 1_4:-55091574 None:intergenic
TGTGGATCTGAAAGGGAGGG+AGG 0.509744 1_4:-55088159 None:intergenic
TTGAGTTTGATGGTTGTCGT+TGG 0.511242 1_4:-55088112 None:intergenic
CTTGCTCCATGCCATTATGA+AGG 0.511393 1_4:+55091443 Msa0170750:CDS
CTCTCTGAAGCGGCGAGGGA+TGG 0.512575 1_4:-55088333 None:intergenic
TGCCCGCAGCACTCTGAGCA+TGG 0.513183 1_4:-55091820 None:intergenic
GAAGCCTCACTCACGTGTGC+AGG 0.514046 1_4:+55091596 Msa0170750:CDS
TTCGAGTTAATGGCAGAGAA+GGG 0.516352 1_4:+55090886 Msa0170750:CDS
TCAGACACTGTGGCGTTCAT+GGG 0.519152 1_4:-55093203 None:intergenic
TGTAAATAACAGATAGGCAT+TGG 0.520470 1_4:+55093762 Msa0170750:three_prime_UTR
GATCGCCTATGCAAGACTCT+TGG 0.523029 1_4:+55090951 Msa0170750:CDS
GAAACTCTCTGAAGCGGCGA+GGG 0.523140 1_4:-55088337 None:intergenic
AGCCATGCTCAGAGTGCTGC+GGG 0.524086 1_4:+55091818 Msa0170750:CDS
GGGGAGAGATAGAGGAGGAG+AGG 0.525352 1_4:-55087982 None:intergenic
GGTTATTTGCCTTGACGTTG+TGG 0.525726 1_4:+55088509 Msa0170750:CDS
GAGGCTTCTGTTCCTGGGAG+AGG 0.525836 1_4:-55091581 None:intergenic
AAAGCTGATGGGAGATCCAT+TGG 0.526083 1_4:+55089877 Msa0170750:CDS
CGAGTGCAACTGTGGGGCTA+AGG 0.528208 1_4:+55093442 Msa0170750:CDS
CTCGAACAAACAAAACGGGC+TGG 0.528227 1_4:-55093554 None:intergenic
AATGGCAAGGCAAATTAGAC+CGG 0.528363 1_4:-55087898 None:intergenic
GTGTCCGAGGAAAATACTCC+GGG 0.528936 1_4:+55093366 Msa0170750:CDS
GCCTGTAACCTCTTCTATCA+TGG 0.529709 1_4:+55088230 Msa0170750:exon
GAGTGAACATTAGAACGAAA+AGG 0.529732 1_4:-55088369 None:intergenic
GGCAGCACAATTATTTCTGG+TGG 0.530349 1_4:-55093182 None:intergenic
TGTGACTCAAAGCTTAAATC+GGG 0.530463 1_4:+55093587 Msa0170750:CDS
CCAGTGATGATGTTGAAGAC+TGG 0.530691 1_4:+55090790 Msa0170750:CDS
GAGTTGTGGATCTGAAAGGG+AGG 0.535893 1_4:-55088163 None:intergenic
TGAGTGAGGCTTCTGTTCCT+GGG 0.540825 1_4:-55091586 None:intergenic
TGGACTGTCGAGTGCAACTG+TGG 0.541774 1_4:+55093434 Msa0170750:CDS
TTCTTCTTGTATGTTATGTG+GGG 0.543399 1_4:-55088002 None:intergenic
GGAGAGTTGTGGATCTGAAA+GGG 0.546759 1_4:-55088166 None:intergenic
TCTTCTATCATGGTCGTTAG+CGG 0.547897 1_4:+55088240 Msa0170750:exon
ATCTGCCACGTCAGCAAGTG+CGG 0.548221 1_4:-55088438 None:intergenic
ATGAAGGGAAATCCATGGTA+TGG 0.549939 1_4:+55091459 Msa0170750:CDS
ACCATGATAGAAGAGGTTAC+AGG 0.551059 1_4:-55088231 None:intergenic
CTTGTCCATCTTCCTCTCCC+AGG 0.551423 1_4:+55091569 Msa0170750:CDS
GAAATCCATGGTATGGTGAG+TGG 0.552195 1_4:+55091466 Msa0170750:CDS
AATGAAGTGGTTTGTGTCCG+AGG 0.552271 1_4:+55093353 Msa0170750:CDS
AGATAGGCATTGGTGGGACA+GGG 0.552999 1_4:+55093772 Msa0170750:three_prime_UTR
AAGAAGGTGCCCATAACCAT+TGG 0.553682 1_4:-55090865 None:intergenic
GGACTGTCGAGTGCAACTGT+GGG 0.555876 1_4:+55093435 Msa0170750:CDS
GAGATCTCGGTGGAGAGTTG+TGG 0.556584 1_4:-55088177 None:intergenic
GCCGCTTCAGAGAGTTTCTC+CGG 0.557550 1_4:+55088342 Msa0170750:CDS
CTCTGCCATTAACTCGAAGA+AGG 0.560242 1_4:-55090881 None:intergenic
CGTGTCGGTGAGATCACCGA+TGG 0.560339 1_4:+55088468 Msa0170750:CDS
TGCAGGATATTCTCTTCAGA+AGG 0.560841 1_4:-55092930 None:intergenic
GAAGCGGCGAGGGATGGTGA+AGG 0.562556 1_4:-55088327 None:intergenic
GACTTGTGTTCTCTAGTTGG+TGG 0.563261 1_4:-55090818 None:intergenic
CCAGTCTTCAACATCATCAC+TGG 0.564657 1_4:-55090790 None:intergenic
CAGTGATGATGTTGAAGACT+GGG 0.564685 1_4:+55090791 Msa0170750:CDS
GGAAACAACGCGGAAGGCGG+TGG 0.565303 1_4:-55088417 None:intergenic
TGGAGAGTTGTGGATCTGAA+AGG 0.568009 1_4:-55088167 None:intergenic
TGGGTTGAGCAAGTTTCGAA+TGG 0.568760 1_4:+55093394 Msa0170750:CDS
TGTTTCCGCACTTGCTGACG+TGG 0.569675 1_4:+55088433 Msa0170750:CDS
CCACTGTAAAGATGAGAGAC+TGG 0.570607 1_4:+55093613 Msa0170750:CDS
TATGCAAGACTCTTGGAGCT+AGG 0.577658 1_4:+55090958 Msa0170750:CDS
AAGTGCGGAAACAACGCGGA+AGG 0.578936 1_4:-55088423 None:intergenic
TGGATGTTTCGAAGAAATAC+GGG 0.580345 1_4:+55091409 Msa0170750:CDS
AAAGAGTGACGTTGAACGTG+TGG 0.580901 1_4:+55091791 Msa0170750:CDS
CTTGTTAGGATCAAATGAAG+TGG 0.581722 1_4:+55093340 Msa0170750:CDS
AAGAACTCTTGCAATGAGCT+CGG 0.581985 1_4:+55093022 Msa0170750:CDS
GGTTGTCGTTGGATTAATCT+GGG 0.583070 1_4:-55088101 None:intergenic
ATATCTCCACAGCACATACA+TGG 0.583294 1_4:-55089913 None:intergenic
AATAACAGATAGGCATTGGT+GGG 0.583324 1_4:+55093766 Msa0170750:three_prime_UTR
GCTCATGCTCTGACAAAGAC+CGG 0.584807 1_4:-55091635 None:intergenic
TGTGGGGCTAAGGATGATGA+TGG 0.586935 1_4:+55093452 Msa0170750:CDS
TCTTCTTGTATGTTATGTGG+GGG 0.587667 1_4:-55088001 None:intergenic
GGAGGAAAAGTAGTCTATGG+TGG 0.589886 1_4:+55091939 Msa0170750:CDS
TTGCTCCATGCCATTATGAA+GGG 0.590236 1_4:+55091444 Msa0170750:CDS
AAATAACAGATAGGCATTGG+TGG 0.591327 1_4:+55093765 Msa0170750:three_prime_UTR
AAGCCATGCTCAGAGTGCTG+CGG 0.591353 1_4:+55091817 Msa0170750:CDS
TTTGCCAAAATAAAGAAGCC+CGG 0.591612 1_4:+55087879 None:intergenic
CATCATCACTGGTTGTCACA+TGG 0.592955 1_4:-55090779 None:intergenic
TGTGTCCGAGGAAAATACTC+CGG 0.593241 1_4:+55093365 Msa0170750:CDS
GATTTCCCTTCATAATGGCA+TGG 0.595321 1_4:-55091449 None:intergenic
TGGACAAGGGTAGATTGGAT+AGG 0.597123 1_4:-55091554 None:intergenic
TGGCGCGTGAGGTGAGATCT+CGG 0.597657 1_4:-55088190 None:intergenic
CATGGTGTAGTCCATGCCAA+TGG 0.598587 1_4:+55090849 Msa0170750:CDS
GAATGGAACGTGGACTTGAG+AGG 0.599671 1_4:+55093411 Msa0170750:CDS
AGCAAGTTTCGAATGGAACG+TGG 0.600571 1_4:+55093401 Msa0170750:CDS
GTGTCGGTGAGATCACCGAT+GGG 0.602427 1_4:+55088469 Msa0170750:CDS
TGGTTTGTGGTATCCACCAA+TGG 0.603238 1_4:-55089893 None:intergenic
AGTTGTGGATCTGAAAGGGA+GGG 0.603447 1_4:-55088162 None:intergenic
ATCCTAACAAGAACTTGACC+TGG 0.604261 1_4:-55093328 None:intergenic
TCGAGTTAATGGCAGAGAAG+GGG 0.604967 1_4:+55090887 Msa0170750:CDS
CTGGGAGAGGAAGATGGACA+AGG 0.606165 1_4:-55091568 None:intergenic
TGGTAACGCTTACTGCACAC+TGG 0.606738 1_4:-55089844 None:intergenic
TAAGGGTGCTGTTTGCAAGG+TGG 0.609196 1_4:+55091878 Msa0170750:CDS
CCATTATGAAGGGAAATCCA+TGG 0.613353 1_4:+55091454 Msa0170750:CDS
CGAGTTAATGGCAGAGAAGG+GGG 0.613514 1_4:+55090888 Msa0170750:CDS
GGTGCCCATAACCATTGGCA+TGG 0.613676 1_4:-55090860 None:intergenic
AATCCATGGTATGGTGAGTG+GGG 0.614854 1_4:+55091468 Msa0170750:CDS
TGCGGAAACAACGCGGAAGG+CGG 0.616307 1_4:-55088420 None:intergenic
AAGCGGCGAGGGATGGTGAA+GGG 0.618092 1_4:-55088326 None:intergenic
ATATCCTGCACACGTGAGTG+AGG 0.618383 1_4:-55091600 None:intergenic
ATTTGCCTTGCCATTTATGG+CGG 0.619045 1_4:+55087906 Msa0170750:five_prime_UTR
GTTTACCGCCATAAATGGCA+AGG 0.621211 1_4:-55087911 None:intergenic
GAGGAAAAGTAGTCTATGGT+GGG 0.621787 1_4:+55091940 Msa0170750:CDS
TGATGATGGAGAGAGAATGA+TGG 0.623364 1_4:+55093466 Msa0170750:CDS
GCATGAGCTTGTAAATATGA+GGG 0.624440 1_4:+55091650 Msa0170750:CDS
TAGCTCCAAGAGTCTTGCAT+AGG 0.626522 1_4:-55090956 None:intergenic
ACAACTAGTGGTAGTTACAT+GGG 0.628297 1_4:+55093647 Msa0170750:CDS
TCTATCATGGTCGTTAGCGG+AGG 0.629761 1_4:+55088243 Msa0170750:exon
GCTAACGACCATGATAGAAG+AGG 0.631432 1_4:-55088238 None:intergenic
TCTGTACATACAAACAAATG+GGG 0.631676 1_4:+55093837 Msa0170750:three_prime_UTR
TGGCAGAAAAGTTAGTGTGA+TGG 0.634616 1_4:+55091389 Msa0170750:intron
ACATAGTTTAGCATCATCCA+AGG 0.634897 1_4:-55092987 None:intergenic
GCTGATGGGAGATCCATTGG+TGG 0.636198 1_4:+55089880 Msa0170750:CDS
TGGCAGATCCTCTTCCGTGT+CGG 0.637514 1_4:+55088453 Msa0170750:CDS
AGAAACTCTCTGAAGCGGCG+AGG 0.637539 1_4:-55088338 None:intergenic
GTGATATGTGTGGTGTGTGG+CGG 0.639114 1_4:+55093492 Msa0170750:CDS
CATCTTCTTCCACAACGTCA+AGG 0.640303 1_4:-55088518 None:intergenic
ATTAGAACGAAAAGGTCCGC+CGG 0.640366 1_4:-55088361 None:intergenic
GAGTGACGTTGAACGTGTGG+AGG 0.640450 1_4:+55091794 Msa0170750:CDS
ATGGCAAGGCAAATTAGACC+GGG 0.642515 1_4:-55087897 None:intergenic
ATAATCAAGAAGCTCTGGAG+AGG 0.642892 1_4:-55091901 None:intergenic
GACTCAAAGCTTAAATCGGG+TGG 0.643015 1_4:+55093590 Msa0170750:CDS
CATGTAACTACCACTAGTTG+TGG 0.646057 1_4:-55093645 None:intergenic
TGGAACGTGGACTTGAGAGG+TGG 0.649309 1_4:+55093414 Msa0170750:CDS
GTCGGTGAGATCACCGATGG+GGG 0.651106 1_4:+55088471 Msa0170750:CDS
TATCCCCACTCACCATACCA+TGG 0.651467 1_4:-55091471 None:intergenic
AATTTAGACAAATCTGACAC+TGG 0.653271 1_4:-55093101 None:intergenic
CACAAACCATGTATGTGCTG+TGG 0.653907 1_4:+55089907 Msa0170750:CDS
AAGGGAATGAAAAGAAATCG+TGG 0.654007 1_4:-55088308 None:intergenic
TATTGCCTTTCTGAACTGGG+AGG 0.655842 1_4:+55091921 Msa0170750:CDS
TCTGGGTCTAATTGGGTGAG+TGG 0.656988 1_4:+55091846 Msa0170750:CDS
GACTGTCGAGTGCAACTGTG+GGG 0.662182 1_4:+55093436 Msa0170750:CDS
CTGTACATACAAACAAATGG+GGG 0.662633 1_4:+55093838 Msa0170750:three_prime_UTR
ACGTCAAGGCAAATAACCGC+CGG 0.662764 1_4:-55088504 None:intergenic
GCCGGAGAAACTCTCTGAAG+CGG 0.664956 1_4:-55088343 None:intergenic
TAACAAGAACTTGACCTGGG+TGG 0.673206 1_4:-55093324 None:intergenic
TGTCGGTGAGATCACCGATG+GGG 0.674929 1_4:+55088470 Msa0170750:CDS
TAGAAGAGGTTACAGGCGCG+TGG 0.676595 1_4:-55088224 None:intergenic
TCCTAACAAGAACTTGACCT+GGG 0.680686 1_4:-55093327 None:intergenic
TGGCAGCTATTGTCTCACAC+AGG 0.681148 1_4:+55091506 Msa0170750:CDS
CCAGTCTCTCATCTTTACAG+TGG 0.682996 1_4:-55093613 None:intergenic
CTTGTGATATGTGTGGTGTG+TGG 0.684382 1_4:+55093489 Msa0170750:CDS
CATCGGTGATCTCACCGACA+CGG 0.685141 1_4:-55088467 None:intergenic
GCTAGTGTTACCACAACTAG+TGG 0.686933 1_4:+55093635 Msa0170750:CDS
AAAGAAATCGTGGTAATCGG+CGG 0.688894 1_4:-55088298 None:intergenic
AATCTTTAGGTCAGACACTG+TGG 0.691571 1_4:-55093213 None:intergenic
TTAGACAAATCTGACACTGG+CGG 0.691794 1_4:-55093098 None:intergenic
GACGAACTAGTTGGCTACAG+CGG 0.692981 1_4:+55093290 Msa0170750:CDS
TAGAACCTGAAATATGAACA+AGG 0.696033 1_4:-55093799 None:intergenic
TGGGAGAGGAAGATGGACAA+GGG 0.696590 1_4:-55091567 None:intergenic
CAGCAAGTGCGGAAACAACG+CGG 0.723754 1_4:-55088427 None:intergenic
GCTTCAGAGAGTTTCTCCGG+CGG 0.727571 1_4:+55088345 Msa0170750:CDS
CGGTGTAGAAGATTCCACCC+AGG 0.728487 1_4:+55093310 Msa0170750:CDS
ATGATGGCTTGTGATATGTG+TGG 0.730981 1_4:+55093482 Msa0170750:CDS
CGCGTGAGGTGAGATCTCGG+TGG 0.742621 1_4:-55088187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGCATATTATTATAA+TGG - chr1_4:55088798-55088817 None:intergenic 10.0%
!!! AATAGTCAATATTATTTTTT+GGG - chr1_4:55089356-55089375 None:intergenic 10.0%
!!! CAGATATATATTTTATTTTT+TGG + chr1_4:55089614-55089633 Msa0170750:intron 10.0%
!! AAAAAACAATACAAATTAAT+AGG - chr1_4:55089802-55089821 None:intergenic 10.0%
!! TAATTGATATAGTTAAAATA+GGG + chr1_4:55091004-55091023 Msa0170750:intron 10.0%
!! TAATTTAAATATAAGCAAAT+GGG - chr1_4:55092334-55092353 None:intergenic 10.0%
!! GAAAAAATAACAAATTAATT+AGG + chr1_4:55092380-55092399 Msa0170750:intron 10.0%
!! AAAAATAACAAATTAATTAG+GGG + chr1_4:55092382-55092401 Msa0170750:intron 10.0%
!! ATATAGATTATAATTTATAC+AGG - chr1_4:55092582-55092601 None:intergenic 10.0%
!! TGTATAAATTATAATCTATA+TGG + chr1_4:55092581-55092600 Msa0170750:intron 10.0%
!! ATGGATAAATATATTTAAAA+AGG + chr1_4:55092600-55092619 Msa0170750:intron 10.0%
!! ATGCAAATTAAAATTGAAAT+TGG + chr1_4:55088719-55088738 Msa0170750:intron 15.0%
!!! TTTCATTTGGATATTTTTTT+TGG + chr1_4:55089224-55089243 Msa0170750:intron 15.0%
!!! CAATAGTCAATATTATTTTT+TGG - chr1_4:55089357-55089376 None:intergenic 15.0%
!! GTAATTGATATAGTTAAAAT+AGG + chr1_4:55091003-55091022 Msa0170750:intron 15.0%
!! CTAATTTAAATATAAGCAAA+TGG - chr1_4:55092335-55092354 None:intergenic 15.0%
!! TTAAATTTAATAGAGAAACA+AGG - chr1_4:55092538-55092557 None:intergenic 15.0%
!!! TAAATTTAAAATTGTTACAC+TGG + chr1_4:55092549-55092568 Msa0170750:intron 15.0%
!! AGAAGTGATAAAAAGAAAAA+GGG - chr1_4:55088033-55088052 None:intergenic 20.0%
!! AAGAAGTGATAAAAAGAAAA+AGG - chr1_4:55088034-55088053 None:intergenic 20.0%
!! ATTAATTAAAGCAAAAGAGT+CGG - chr1_4:55088677-55088696 None:intergenic 20.0%
!!! ACTCTTTTGCTTTAATTAAT+AGG + chr1_4:55088677-55088696 Msa0170750:intron 20.0%
!! AATATAAATGGTACGTATTT+GGG + chr1_4:55089006-55089025 Msa0170750:intron 20.0%
!!! ACACTTTTTAAATGAATAAG+TGG + chr1_4:55089663-55089682 Msa0170750:intron 20.0%
!!! CACTTTTTAAATGAATAAGT+GGG + chr1_4:55089664-55089683 Msa0170750:intron 20.0%
!!! ACTTTTTAAATGAATAAGTG+GGG + chr1_4:55089665-55089684 Msa0170750:intron 20.0%
!! AAACAAAAAAATAGCTCAAT+TGG - chr1_4:55089733-55089752 None:intergenic 20.0%
!!! TTGTTTAACTTTTGTTTTCT+TGG + chr1_4:55089747-55089766 Msa0170750:intron 20.0%
!!! TTGTATTGTTTTTTGAACTT+AGG + chr1_4:55089808-55089827 Msa0170750:intron 20.0%
!!! ATTTTATAATCAAAGCTGAT+GGG + chr1_4:55089866-55089885 Msa0170750:CDS 20.0%
!! TTATGAAATATAAGAATGAG+AGG + chr1_4:55090167-55090186 Msa0170750:intron 20.0%
!! CAAATTTCAATCTACAATTA+AGG - chr1_4:55090320-55090339 None:intergenic 20.0%
!! CTTAATTGTAGATTGAAATT+TGG + chr1_4:55090318-55090337 Msa0170750:intron 20.0%
!!! ATGACTAATTTTCTAGAATT+TGG - chr1_4:55090347-55090366 None:intergenic 20.0%
!!! ATTTCATACTGAAAGTATTT+AGG - chr1_4:55091102-55091121 None:intergenic 20.0%
!! GATCATTCAAATTAAATATG+AGG + chr1_4:55091210-55091229 Msa0170750:intron 20.0%
!! GAAACAAGAGAATATTATTT+AGG + chr1_4:55091303-55091322 Msa0170750:intron 20.0%
!! TTAGGTTATTTGTGTTTATA+TGG + chr1_4:55091321-55091340 Msa0170750:intron 20.0%
!! TATTTGTGTTTATATGGATA+TGG + chr1_4:55091327-55091346 Msa0170750:intron 20.0%
!!! TTTAAGTTTAACTGCTTAAA+AGG + chr1_4:55092054-55092073 Msa0170750:intron 20.0%
!!! AACTGATTTGAAATCATATA+AGG - chr1_4:55092829-55092848 None:intergenic 20.0%
!! ATAACTTAACGAATATTAGA+AGG - chr1_4:55093689-55093708 None:intergenic 20.0%
! ATTCTTCTTGTATGTTATGT+GGG - chr1_4:55088006-55088025 None:intergenic 25.0%
! TATTCTTCTTGTATGTTATG+TGG - chr1_4:55088007-55088026 None:intergenic 25.0%
!! TCTTCTTTTCATACGTTTTA+AGG - chr1_4:55088274-55088293 None:intergenic 25.0%
! GATATATTGTGACGATAAAA+CGG + chr1_4:55088963-55088982 Msa0170750:intron 25.0%
! GAATATAAATGGTACGTATT+TGG + chr1_4:55089005-55089024 Msa0170750:intron 25.0%
!!! GCAAGTTTTCTTTTTTCATT+TGG + chr1_4:55089211-55089230 Msa0170750:intron 25.0%
!!! TTTTTGGAATATTCTCCATT+TGG + chr1_4:55089240-55089259 Msa0170750:intron 25.0%
! ACTCTATCAAGAAAAACAAT+AGG - chr1_4:55089779-55089798 None:intergenic 25.0%
!! CATCAGCTTTGATTATAAAA+TGG - chr1_4:55089867-55089886 None:intergenic 25.0%
!! CATTTTATAATCAAAGCTGA+TGG + chr1_4:55089865-55089884 Msa0170750:CDS 25.0%
! CAATTGATAAGAATATCCAA+AGG - chr1_4:55089994-55090013 None:intergenic 25.0%
!!! CAATTGATTGTTACTTTGTT+AGG + chr1_4:55090008-55090027 Msa0170750:intron 25.0%
!! TCATGTTTATATCTGAAATG+AGG + chr1_4:55090116-55090135 Msa0170750:intron 25.0%
!! CATGTTTATATCTGAAATGA+GGG + chr1_4:55090117-55090136 Msa0170750:intron 25.0%
! AGTAATAAATGACTTAGGTT+GGG - chr1_4:55090278-55090297 None:intergenic 25.0%
! TAGTAATAAATGACTTAGGT+TGG - chr1_4:55090279-55090298 None:intergenic 25.0%
! TCAGTAGTAATAAATGACTT+AGG - chr1_4:55090283-55090302 None:intergenic 25.0%
! CTGTAAATTGAATAAACCAA+GGG - chr1_4:55090483-55090502 None:intergenic 25.0%
! CTGTAAATTGAATAAACCAA+GGG - chr1_4:55090483-55090502 None:intergenic 25.0%
! CATGCATTAAGAAAAACAAA+AGG - chr1_4:55090632-55090651 None:intergenic 25.0%
!!! ATTTTAGAAATAGCATGTGT+TGG + chr1_4:55090695-55090714 Msa0170750:intron 25.0%
! ATATTCAGTACATTACACTT+AGG + chr1_4:55091243-55091262 Msa0170750:intron 25.0%
!! AGGATATGATTTTGTATTAC+CGG + chr1_4:55091616-55091635 Msa0170750:CDS 25.0%
!!! GACCTATTTTGTTTTTTGAT+GGG + chr1_4:55091672-55091691 Msa0170750:CDS 25.0%
! AACCCATCAAAAAACAAAAT+AGG - chr1_4:55091677-55091696 None:intergenic 25.0%
! TTAGATTTCAATGTGATTCT+TGG + chr1_4:55092011-55092030 Msa0170750:intron 25.0%
! TACACATCACATTTATAACA+TGG - chr1_4:55092108-55092127 None:intergenic 25.0%
!!! TTTTACTTTTCAAGTCATGA+TGG + chr1_4:55092192-55092211 Msa0170750:intron 25.0%
!!! AAGTTTTAGATGTTTGTTTC+TGG + chr1_4:55092269-55092288 Msa0170750:intron 25.0%
!!! AAAGCATTGATATTATCTCT+TGG + chr1_4:55092747-55092766 Msa0170750:intron 25.0%
!!! CTGATGCTTTTTTAATTCTT+TGG + chr1_4:55092792-55092811 Msa0170750:intron 25.0%
! TATTGTGTTCTATTTGTTTC+AGG + chr1_4:55092853-55092872 Msa0170750:intron 25.0%
!!! AATTATTTCTGGTGGAATTT+TGG - chr1_4:55093177-55093196 None:intergenic 25.0%
! TTCTGTACATACAAACAAAT+GGG + chr1_4:55093836-55093855 Msa0170750:three_prime_UTR 25.0%
TTCTTCTTGTATGTTATGTG+GGG - chr1_4:55088005-55088024 None:intergenic 30.0%
! AATCTGGGAAGAACATTTTA+TGG - chr1_4:55088089-55088108 None:intergenic 30.0%
TGAAAAGAAATCGTGGTAAT+CGG - chr1_4:55088304-55088323 None:intergenic 30.0%
GATAAAACGGAGAGATATTA+GGG + chr1_4:55088976-55088995 Msa0170750:intron 30.0%
TAGGGAGAAGAGAATATAAA+TGG + chr1_4:55088994-55089013 Msa0170750:intron 30.0%
!!! GTGGTTTTGATTTTTGGATA+CGG + chr1_4:55089086-55089105 Msa0170750:intron 30.0%
TTGTGCTAAAAAGTTATGCT+TGG + chr1_4:55089172-55089191 Msa0170750:intron 30.0%
ACAACTAAGCAAAATCCAAA+TGG - chr1_4:55089258-55089277 None:intergenic 30.0%
!!! ATTGTTCTTTTTTGCAACAC+TGG + chr1_4:55089425-55089444 Msa0170750:intron 30.0%
!!! TTCTTTCTTTTTTGCAACAC+TGG + chr1_4:55089451-55089470 Msa0170750:intron 30.0%
!!! TTTTTGGTTTAGTAGTGTAG+TGG + chr1_4:55089630-55089649 Msa0170750:intron 30.0%
CAAAAAAATAGCTCAATTGG+TGG - chr1_4:55089730-55089749 None:intergenic 30.0%
AATGGAGAAAAATACTCACT+TGG - chr1_4:55089956-55089975 None:intergenic 30.0%
AGGATGACAATTGCATAAAA+TGG - chr1_4:55089974-55089993 None:intergenic 30.0%
TTTATGCAATTGTCATCCTT+TGG + chr1_4:55089975-55089994 Msa0170750:intron 30.0%
ATATGGAATCTTGTAGGAAT+AGG + chr1_4:55090077-55090096 Msa0170750:intron 30.0%
TATGGAATCTTGTAGGAATA+GGG + chr1_4:55090078-55090097 Msa0170750:intron 30.0%
TGCTGAAATAGAATGTTTGT+TGG + chr1_4:55090429-55090448 Msa0170750:intron 30.0%
! AAATAGAATGTTTGTTGGTC+TGG + chr1_4:55090434-55090453 Msa0170750:intron 30.0%
! AATAGAATGTTTGTTGGTCT+GGG + chr1_4:55090435-55090454 Msa0170750:intron 30.0%
GCTGTAAATTGAATAAACCA+AGG - chr1_4:55090484-55090503 None:intergenic 30.0%
GCTGTAAATTGAATAAACCA+AGG - chr1_4:55090484-55090503 None:intergenic 30.0%
! TGTTTTTCTTAATGCATGTC+TGG + chr1_4:55090634-55090653 Msa0170750:intron 30.0%
! AACACAAGTCATCTTTTACA+TGG + chr1_4:55090831-55090850 Msa0170750:CDS 30.0%
TTGCCATATTATGGATTTCT+GGG + chr1_4:55090929-55090948 Msa0170750:CDS 30.0%
!! CACTACTTAACAGAAGTATT+AGG - chr1_4:55091066-55091085 None:intergenic 30.0%
CTAATACTTCTGTTAAGTAG+TGG + chr1_4:55091064-55091083 Msa0170750:intron 30.0%
AGTACATTACACTTAGGATT+TGG + chr1_4:55091249-55091268 Msa0170750:intron 30.0%
! TTTTCTGCCAATGTACAAAT+GGG - chr1_4:55091379-55091398 None:intergenic 30.0%
ATGGATGTTTCGAAGAAATA+CGG + chr1_4:55091408-55091427 Msa0170750:CDS 30.0%
!!! GGACCTATTTTGTTTTTTGA+TGG + chr1_4:55091671-55091690 Msa0170750:CDS 30.0%
TTCTGGATTATCAAGTTCTT+GGG + chr1_4:55091767-55091786 Msa0170750:CDS 30.0%
AAGTTTAACTGCTTAAAAGG+AGG + chr1_4:55092057-55092076 Msa0170750:intron 30.0%
!! TTCCTATCTAGTTCTTGTAA+TGG - chr1_4:55092311-55092330 None:intergenic 30.0%
AAATTAATTAGGGGTCTGTT+TGG + chr1_4:55092391-55092410 Msa0170750:intron 30.0%
AATTAATTAGGGGTCTGTTT+GGG + chr1_4:55092392-55092411 Msa0170750:intron 30.0%
TCAGTATTAGTAATGACATC+AGG - chr1_4:55092695-55092714 None:intergenic 30.0%
TGATGTCATTACTAATACTG+AGG + chr1_4:55092694-55092713 Msa0170750:intron 30.0%
!! TATTATCTCTTGGTGTTCTT+TGG + chr1_4:55092757-55092776 Msa0170750:intron 30.0%
! ATAAATATCTCAAGCATTGC+AGG - chr1_4:55092950-55092969 None:intergenic 30.0%
AATTTAGACAAATCTGACAC+TGG - chr1_4:55093104-55093123 None:intergenic 30.0%
TAAATTACGTATCTCATGTC+AGG + chr1_4:55093118-55093137 Msa0170750:CDS 30.0%
! TGTTATTTACAGGCTATTTC+AGG - chr1_4:55093753-55093772 None:intergenic 30.0%
ATAGCCTGTAAATAACAGAT+AGG + chr1_4:55093756-55093775 Msa0170750:three_prime_UTR 30.0%
! AATGCCTATCTGTTATTTAC+AGG - chr1_4:55093763-55093782 None:intergenic 30.0%
TGTAAATAACAGATAGGCAT+TGG + chr1_4:55093762-55093781 Msa0170750:three_prime_UTR 30.0%
TAGAACCTGAAATATGAACA+AGG - chr1_4:55093802-55093821 None:intergenic 30.0%
CTTCTGTACATACAAACAAA+TGG + chr1_4:55093835-55093854 Msa0170750:three_prime_UTR 30.0%
TCTGTACATACAAACAAATG+GGG + chr1_4:55093837-55093856 Msa0170750:three_prime_UTR 30.0%
! CTAATTTGCCTTGCCATTTA+TGG + chr1_4:55087903-55087922 Msa0170750:five_prime_UTR 35.0%
TCTTCTTGTATGTTATGTGG+GGG - chr1_4:55088004-55088023 None:intergenic 35.0%
! GGTTTGGTTATTGAGTTTGA+TGG - chr1_4:55088125-55088144 None:intergenic 35.0%
AAGGGAATGAAAAGAAATCG+TGG - chr1_4:55088311-55088330 None:intergenic 35.0%
GAGTGAACATTAGAACGAAA+AGG - chr1_4:55088372-55088391 None:intergenic 35.0%
! TTTTTCTTCCGGTTTCTATC+CGG + chr1_4:55088634-55088653 Msa0170750:intron 35.0%
AATTAAAGCAAAAGAGTCGG+TGG - chr1_4:55088674-55088693 None:intergenic 35.0%
CGATAAAACGGAGAGATATT+AGG + chr1_4:55088975-55088994 Msa0170750:intron 35.0%
ATAAATGGTACGTATTTGGG+TGG + chr1_4:55089009-55089028 Msa0170750:intron 35.0%
TAAATGGTACGTATTTGGGT+GGG + chr1_4:55089010-55089029 Msa0170750:intron 35.0%
!!! TGACACGTGGTTTTGATTTT+TGG + chr1_4:55089080-55089099 Msa0170750:intron 35.0%
!! AATGAATAAGTGGGGTATTG+CGG + chr1_4:55089673-55089692 Msa0170750:intron 35.0%
! TTATATCTGAAATGAGGGCT+AGG + chr1_4:55090122-55090141 Msa0170750:intron 35.0%
! TATATCTGAAATGAGGGCTA+GGG + chr1_4:55090123-55090142 Msa0170750:intron 35.0%
! AACTACAATGCATTGGCATA+GGG - chr1_4:55090378-55090397 None:intergenic 35.0%
! TAACTACAATGCATTGGCAT+AGG - chr1_4:55090379-55090398 None:intergenic 35.0%
ACTCAGTAACTACAATGCAT+TGG - chr1_4:55090385-55090404 None:intergenic 35.0%
! ATAGAATGTTTGTTGGTCTG+GGG + chr1_4:55090436-55090455 Msa0170750:intron 35.0%
AATTGAATAAACCAAGGGAG+AGG - chr1_4:55090478-55090497 None:intergenic 35.0%
ATTTACAGCTAGTGAAGAAG+CGG + chr1_4:55090495-55090514 Msa0170750:intron 35.0%
AATTGAATAAACCAAGGGAG+AGG - chr1_4:55090478-55090497 None:intergenic 35.0%
ATTTACAGCTAGTGAAGAAG+CGG + chr1_4:55090495-55090514 Msa0170750:intron 35.0%
TAGTACCTGATCGTACATTA+TGG + chr1_4:55090721-55090740 Msa0170750:intron 35.0%
ATCAACCATAATGTACGATC+AGG - chr1_4:55090729-55090748 None:intergenic 35.0%
! GGTTGATCTGTTTTATCTTC+AGG + chr1_4:55090742-55090761 Msa0170750:intron 35.0%
!! TCTTTCTGGTTGCCATATTA+TGG + chr1_4:55090920-55090939 Msa0170750:CDS 35.0%
GTTGCCATATTATGGATTTC+TGG + chr1_4:55090928-55090947 Msa0170750:CDS 35.0%
GATCCCAGAAATCCATAATA+TGG - chr1_4:55090935-55090954 None:intergenic 35.0%
GTTTGTTCCCATTTGTACAT+TGG + chr1_4:55091369-55091388 Msa0170750:intron 35.0%
! CTTTTCTGCCAATGTACAAA+TGG - chr1_4:55091380-55091399 None:intergenic 35.0%
TGGATGTTTCGAAGAAATAC+GGG + chr1_4:55091409-55091428 Msa0170750:CDS 35.0%
AGCATGAGCTTGTAAATATG+AGG + chr1_4:55091649-55091668 Msa0170750:CDS 35.0%
GCATGAGCTTGTAAATATGA+GGG + chr1_4:55091650-55091669 Msa0170750:CDS 35.0%
ATGACATAACCTGCAAAAAG+CGG + chr1_4:55091733-55091752 Msa0170750:CDS 35.0%
CTTCTGGATTATCAAGTTCT+TGG + chr1_4:55091766-55091785 Msa0170750:CDS 35.0%
TGATTATTGCCTTTCTGAAC+TGG + chr1_4:55091917-55091936 Msa0170750:CDS 35.0%
GATTATTGCCTTTCTGAACT+GGG + chr1_4:55091918-55091937 Msa0170750:CDS 35.0%
AATTCATACACTCCAGTTTG+AGG - chr1_4:55091987-55092006 None:intergenic 35.0%
AAACTGGAGTGTATGAATTC+AGG + chr1_4:55091988-55092007 Msa0170750:CDS 35.0%
!! TTTAGATGTTTGTTTCTGGC+AGG + chr1_4:55092273-55092292 Msa0170750:intron 35.0%
GACCATTACAAGAACTAGAT+AGG + chr1_4:55092306-55092325 Msa0170750:intron 35.0%
CATTATGTGACATTGTCGTA+GGG + chr1_4:55092481-55092500 Msa0170750:intron 35.0%
AGGTTGGAAAAGGATATGAT+AGG - chr1_4:55092643-55092662 None:intergenic 35.0%
GAAGAACATCCACTATTTCA+GGG - chr1_4:55092725-55092744 None:intergenic 35.0%
AGAAGAACATCCACTATTTC+AGG - chr1_4:55092726-55092745 None:intergenic 35.0%
ACATAGTTTAGCATCATCCA+AGG - chr1_4:55092990-55093009 None:intergenic 35.0%
!! CTTTTGCTGCTTCAATCTTT+AGG - chr1_4:55093229-55093248 None:intergenic 35.0%
!! TTTCAAGTTGACGAACTAGT+TGG + chr1_4:55093281-55093300 Msa0170750:CDS 35.0%
CTTGTTAGGATCAAATGAAG+TGG + chr1_4:55093340-55093359 Msa0170750:CDS 35.0%
!!! TAAGCTTTGAGTCACAGTTT+TGG - chr1_4:55093583-55093602 None:intergenic 35.0%
CTGTGACTCAAAGCTTAAAT+CGG + chr1_4:55093586-55093605 Msa0170750:CDS 35.0%
TGTGACTCAAAGCTTAAATC+GGG + chr1_4:55093587-55093606 Msa0170750:CDS 35.0%
ACAACTAGTGGTAGTTACAT+GGG + chr1_4:55093647-55093666 Msa0170750:CDS 35.0%
!! AAATAACAGATAGGCATTGG+TGG + chr1_4:55093765-55093784 Msa0170750:three_prime_UTR 35.0%
!! AATAACAGATAGGCATTGGT+GGG + chr1_4:55093766-55093785 Msa0170750:three_prime_UTR 35.0%
CTGTACATACAAACAAATGG+GGG + chr1_4:55093838-55093857 Msa0170750:three_prime_UTR 35.0%
!! TAGACCGGGCTTCTTTATTT+TGG - chr1_4:55087886-55087905 None:intergenic 40.0%
AATGGCAAGGCAAATTAGAC+CGG - chr1_4:55087901-55087920 None:intergenic 40.0%
! ATTTGCCTTGCCATTTATGG+CGG + chr1_4:55087906-55087925 Msa0170750:five_prime_UTR 40.0%
! GGAGAGTGGAGAGATTTTTA+AGG - chr1_4:55087964-55087983 None:intergenic 40.0%
GGTTGTCGTTGGATTAATCT+GGG - chr1_4:55088104-55088123 None:intergenic 40.0%
TGGTTGTCGTTGGATTAATC+TGG - chr1_4:55088105-55088124 None:intergenic 40.0%
! TTGAGTTTGATGGTTGTCGT+TGG - chr1_4:55088115-55088134 None:intergenic 40.0%
ACCATGATAGAAGAGGTTAC+AGG - chr1_4:55088234-55088253 None:intergenic 40.0%
TCTTCTATCATGGTCGTTAG+CGG + chr1_4:55088240-55088259 Msa0170750:exon 40.0%
AAAGAAATCGTGGTAATCGG+CGG - chr1_4:55088301-55088320 None:intergenic 40.0%
CTGATCACAATACACAGATC+TGG - chr1_4:55088553-55088572 None:intergenic 40.0%
GAGTCAACTCACCAAAAACT+CGG - chr1_4:55088578-55088597 None:intergenic 40.0%
!!! GAGTTTTTGGTGAGTTGACT+CGG + chr1_4:55088577-55088596 Msa0170750:intron 40.0%
! GTGAATCGCTTTGGTTTCAT+CGG + chr1_4:55088611-55088630 Msa0170750:intron 40.0%
!!! GGTTTCATCGGTTTTTCTTC+CGG + chr1_4:55088623-55088642 Msa0170750:intron 40.0%
TCCACATGTCTCCTTCTTAA+GGG - chr1_4:55089048-55089067 None:intergenic 40.0%
TTCCACATGTCTCCTTCTTA+AGG - chr1_4:55089049-55089068 None:intergenic 40.0%
!! ATGAATAAGTGGGGTATTGC+GGG + chr1_4:55089674-55089693 Msa0170750:intron 40.0%
! TTTTTGAACTTAGGCTGCAG+CGG + chr1_4:55089817-55089836 Msa0170750:intron 40.0%
ATATCTCCACAGCACATACA+TGG - chr1_4:55089916-55089935 None:intergenic 40.0%
TTTGTTAGGCTTCCCTCAAT+GGG + chr1_4:55090022-55090041 Msa0170750:intron 40.0%
GTATAATCTTCCCCCATTGA+GGG - chr1_4:55090037-55090056 None:intergenic 40.0%
AGATTCCATATCCCCATTGA+GGG - chr1_4:55090068-55090087 None:intergenic 40.0%
AAGATTCCATATCCCCATTG+AGG - chr1_4:55090069-55090088 None:intergenic 40.0%
ATGGGGATATGGAATCTTGT+AGG + chr1_4:55090071-55090090 Msa0170750:intron 40.0%
AGAGCCTCAATACAAGTGTA+AGG + chr1_4:55090218-55090237 Msa0170750:intron 40.0%
GAGCCTCAATACAAGTGTAA+GGG + chr1_4:55090219-55090238 Msa0170750:intron 40.0%
CAACCCTTACACTTGTATTG+AGG - chr1_4:55090225-55090244 None:intergenic 40.0%
! CAGTGATGATGTTGAAGACT+GGG + chr1_4:55090791-55090810 Msa0170750:CDS 40.0%
! GATGACTTGTGTTCTCTAGT+TGG - chr1_4:55090824-55090843 None:intergenic 40.0%
TAGTCCATGCCAATGGTTAT+GGG + chr1_4:55090856-55090875 Msa0170750:CDS 40.0%
! TTCGAGTTAATGGCAGAGAA+GGG + chr1_4:55090886-55090905 Msa0170750:CDS 40.0%
TCACATTTATGAGACCTGTC+CGG + chr1_4:55091125-55091144 Msa0170750:intron 40.0%
TGGCAGAAAAGTTAGTGTGA+TGG + chr1_4:55091389-55091408 Msa0170750:intron 40.0%
TTGCTCCATGCCATTATGAA+GGG + chr1_4:55091444-55091463 Msa0170750:CDS 40.0%
GATTTCCCTTCATAATGGCA+TGG - chr1_4:55091452-55091471 None:intergenic 40.0%
CCATGGATTTCCCTTCATAA+TGG - chr1_4:55091457-55091476 None:intergenic 40.0%
CCATTATGAAGGGAAATCCA+TGG + chr1_4:55091454-55091473 Msa0170750:CDS 40.0%
ATGAAGGGAAATCCATGGTA+TGG + chr1_4:55091459-55091478 Msa0170750:CDS 40.0%
AAATCCATGGTATGGTGAGT+GGG + chr1_4:55091467-55091486 Msa0170750:CDS 40.0%
! GGTGAGTGGGGATATAATTT+TGG + chr1_4:55091480-55091499 Msa0170750:CDS 40.0%
!!! TGGGGATATAATTTTGGCTC+TGG + chr1_4:55091486-55091505 Msa0170750:CDS 40.0%
GGTTATGTCATCAGACTTAG+AGG - chr1_4:55091724-55091743 None:intergenic 40.0%
!! ATAATCAAGAAGCTCTGGAG+AGG - chr1_4:55091904-55091923 None:intergenic 40.0%
AGGCAATAATCAAGAAGCTC+TGG - chr1_4:55091909-55091928 None:intergenic 40.0%
GAGGAAAAGTAGTCTATGGT+GGG + chr1_4:55091940-55091959 Msa0170750:CDS 40.0%
GATGGATCGAAACTTGATTC+TGG + chr1_4:55092210-55092229 Msa0170750:intron 40.0%
!! ATTCTGGAATCACTTTCACG+AGG + chr1_4:55092226-55092245 Msa0170750:intron 40.0%
!! TTCTGGAATCACTTTCACGA+GGG + chr1_4:55092227-55092246 Msa0170750:intron 40.0%
CCTACGACAATGTCACATAA+TGG - chr1_4:55092483-55092502 None:intergenic 40.0%
CCATTATGTGACATTGTCGT+AGG + chr1_4:55092480-55092499 Msa0170750:intron 40.0%
TAGCGTAAGAAGGTTGGAAA+AGG - chr1_4:55092653-55092672 None:intergenic 40.0%
TACATCTAGCGTAAGAAGGT+TGG - chr1_4:55092659-55092678 None:intergenic 40.0%
TGCATACATCTAGCGTAAGA+AGG - chr1_4:55092663-55092682 None:intergenic 40.0%
ATGGCCAACAATAATTCTCC+AGG + chr1_4:55092897-55092916 Msa0170750:CDS 40.0%
TGAGCCTGGAGAATTATTGT+TGG - chr1_4:55092904-55092923 None:intergenic 40.0%
TGCAGGATATTCTCTTCAGA+AGG - chr1_4:55092933-55092952 None:intergenic 40.0%
AAGAACTCTTGCAATGAGCT+CGG + chr1_4:55093022-55093041 Msa0170750:CDS 40.0%
TTAGACAAATCTGACACTGG+CGG - chr1_4:55093101-55093120 None:intergenic 40.0%
TGGCTTCAGTATCTTCAGAT+TGG - chr1_4:55093157-55093176 None:intergenic 40.0%
ATGGGCAGCACAATTATTTC+TGG - chr1_4:55093188-55093207 None:intergenic 40.0%
AATCTTTAGGTCAGACACTG+TGG - chr1_4:55093216-55093235 None:intergenic 40.0%
! TGAAGCAGCAAAAGCTTTTC+AGG + chr1_4:55093235-55093254 Msa0170750:CDS 40.0%
TCCTAACAAGAACTTGACCT+GGG - chr1_4:55093330-55093349 None:intergenic 40.0%
ATCCTAACAAGAACTTGACC+TGG - chr1_4:55093331-55093350 None:intergenic 40.0%
GAAAATACTCCGGGAAGAAT+GGG + chr1_4:55093375-55093394 Msa0170750:CDS 40.0%
!! TGATGATGGAGAGAGAATGA+TGG + chr1_4:55093466-55093485 Msa0170750:CDS 40.0%
! ATGATGGCTTGTGATATGTG+TGG + chr1_4:55093482-55093501 Msa0170750:CDS 40.0%
GCATCTCGAACAAACAAAAC+GGG - chr1_4:55093561-55093580 None:intergenic 40.0%
GGCATCTCGAACAAACAAAA+CGG - chr1_4:55093562-55093581 None:intergenic 40.0%
CATGTAACTACCACTAGTTG+TGG - chr1_4:55093648-55093667 None:intergenic 40.0%
CACAACTAGTGGTAGTTACA+TGG + chr1_4:55093646-55093665 Msa0170750:CDS 40.0%
! GCATGCCTTGTTCATATTTC+AGG + chr1_4:55093794-55093813 Msa0170750:three_prime_UTR 40.0%
ATGGCAAGGCAAATTAGACC+GGG - chr1_4:55087900-55087919 None:intergenic 45.0%
GTTTACCGCCATAAATGGCA+AGG - chr1_4:55087914-55087933 None:intergenic 45.0%
AGCGAGTTTACCGCCATAAA+TGG - chr1_4:55087919-55087938 None:intergenic 45.0%
ATGGCGGTAAACTCGCTTAA+CGG + chr1_4:55087922-55087941 Msa0170750:five_prime_UTR 45.0%
AGTTGTGGATCTGAAAGGGA+GGG - chr1_4:55088165-55088184 None:intergenic 45.0%
GGAGAGTTGTGGATCTGAAA+GGG - chr1_4:55088169-55088188 None:intergenic 45.0%
TGGAGAGTTGTGGATCTGAA+AGG - chr1_4:55088170-55088189 None:intergenic 45.0%
GCCTGTAACCTCTTCTATCA+TGG + chr1_4:55088230-55088249 Msa0170750:exon 45.0%
GCTAACGACCATGATAGAAG+AGG - chr1_4:55088241-55088260 None:intergenic 45.0%
ATTAGAACGAAAAGGTCCGC+CGG - chr1_4:55088364-55088383 None:intergenic 45.0%
GGTTATTTGCCTTGACGTTG+TGG + chr1_4:55088509-55088528 Msa0170750:CDS 45.0%
CATCTTCTTCCACAACGTCA+AGG - chr1_4:55088521-55088540 None:intergenic 45.0%
!! TGTGATCAGTGCCGAGTTTT+TGG + chr1_4:55088564-55088583 Msa0170750:CDS 45.0%
!! TTTGGTGAGTTGACTCGGTT+CGG + chr1_4:55088582-55088601 Msa0170750:intron 45.0%
! CGGTTTTACGTGAATCGCTT+TGG + chr1_4:55088602-55088621 Msa0170750:intron 45.0%
AAGAGTCGGTGGTAGAAAAC+CGG - chr1_4:55088663-55088682 None:intergenic 45.0%
TCCCTTAAGAAGGAGACATG+TGG + chr1_4:55089044-55089063 Msa0170750:intron 45.0%
GGAGACATGTGGAAGAGTAA+TGG + chr1_4:55089055-55089074 Msa0170750:intron 45.0%
! AAGAGTAATGGAGTGACACG+TGG + chr1_4:55089067-55089086 Msa0170750:intron 45.0%
AAAGCTGATGGGAGATCCAT+TGG + chr1_4:55089877-55089896 Msa0170750:CDS 45.0%
! TGGTTTGTGGTATCCACCAA+TGG - chr1_4:55089896-55089915 None:intergenic 45.0%
CACAGCACATACATGGTTTG+TGG - chr1_4:55089909-55089928 None:intergenic 45.0%
CACAAACCATGTATGTGCTG+TGG + chr1_4:55089907-55089926 Msa0170750:CDS 45.0%
CTTTGTTAGGCTTCCCTCAA+TGG + chr1_4:55090021-55090040 Msa0170750:intron 45.0%
TTGTTAGGCTTCCCTCAATG+GGG + chr1_4:55090023-55090042 Msa0170750:intron 45.0%
GGTATAATCTTCCCCCATTG+AGG - chr1_4:55090038-55090057 None:intergenic 45.0%
TATACCCAACCATCCCTCAA+TGG + chr1_4:55090052-55090071 Msa0170750:intron 45.0%
ATACCCAACCATCCCTCAAT+GGG + chr1_4:55090053-55090072 Msa0170750:intron 45.0%
! GTCTTTTTGAACCTCTCCCT+TGG + chr1_4:55090464-55090483 Msa0170750:intron 45.0%
! GTCTTTTTGAACCTCTCCCT+TGG + chr1_4:55090464-55090483 Msa0170750:intron 45.0%
TTCTCCTCATGCTACATGAG+AGG + chr1_4:55090599-55090618 Msa0170750:intron 45.0%
TCTCCTCATGCTACATGAGA+GGG + chr1_4:55090600-55090619 Msa0170750:intron 45.0%
! CATCATCACTGGTTGTCACA+TGG - chr1_4:55090782-55090801 None:intergenic 45.0%
CCAGTCTTCAACATCATCAC+TGG - chr1_4:55090793-55090812 None:intergenic 45.0%
! CCAGTGATGATGTTGAAGAC+TGG + chr1_4:55090790-55090809 Msa0170750:CDS 45.0%
GACTTGTGTTCTCTAGTTGG+TGG - chr1_4:55090821-55090840 None:intergenic 45.0%
GTAGTCCATGCCAATGGTTA+TGG + chr1_4:55090855-55090874 Msa0170750:CDS 45.0%
!! AAGAAGGTGCCCATAACCAT+TGG - chr1_4:55090868-55090887 None:intergenic 45.0%
CTCTGCCATTAACTCGAAGA+AGG - chr1_4:55090884-55090903 None:intergenic 45.0%
! CTTCGAGTTAATGGCAGAGA+AGG + chr1_4:55090885-55090904 Msa0170750:CDS 45.0%
TCGAGTTAATGGCAGAGAAG+GGG + chr1_4:55090887-55090906 Msa0170750:CDS 45.0%
GGGGGATCTAGATATCTTTC+TGG + chr1_4:55090906-55090925 Msa0170750:CDS 45.0%
TAGCTCCAAGAGTCTTGCAT+AGG - chr1_4:55090959-55090978 None:intergenic 45.0%
TATGCAAGACTCTTGGAGCT+AGG + chr1_4:55090958-55090977 Msa0170750:CDS 45.0%
AAGACTCTTGGAGCTAGGTT+AGG + chr1_4:55090963-55090982 Msa0170750:intron 45.0%
TGCGGTGACATAGTGAAGAT+TGG + chr1_4:55091160-55091179 Msa0170750:intron 45.0%
CTTGCTCCATGCCATTATGA+AGG + chr1_4:55091443-55091462 Msa0170750:CDS 45.0%
GAAATCCATGGTATGGTGAG+TGG + chr1_4:55091466-55091485 Msa0170750:CDS 45.0%
AATCCATGGTATGGTGAGTG+GGG + chr1_4:55091468-55091487 Msa0170750:CDS 45.0%
TGGACAAGGGTAGATTGGAT+AGG - chr1_4:55091557-55091576 None:intergenic 45.0%
GAAGATGGACAAGGGTAGAT+TGG - chr1_4:55091562-55091581 None:intergenic 45.0%
ACATAACCTGCAAAAAGCGG+CGG + chr1_4:55091736-55091755 Msa0170750:CDS 45.0%
AAAGAGTGACGTTGAACGTG+TGG + chr1_4:55091791-55091810 Msa0170750:CDS 45.0%
!! TCTTAAGGGTGCTGTTTGCA+AGG + chr1_4:55091875-55091894 Msa0170750:CDS 45.0%
TATTGCCTTTCTGAACTGGG+AGG + chr1_4:55091921-55091940 Msa0170750:CDS 45.0%
! CTTTTCCTCCCAGTTCAGAA+AGG - chr1_4:55091929-55091948 None:intergenic 45.0%
CTGGGAGGAAAAGTAGTCTA+TGG + chr1_4:55091936-55091955 Msa0170750:CDS 45.0%
GGAGGAAAAGTAGTCTATGG+TGG + chr1_4:55091939-55091958 Msa0170750:CDS 45.0%
AGCAGATGCAATCCTCAAAC+TGG + chr1_4:55091972-55091991 Msa0170750:CDS 45.0%
TAAAAGGAGGTCATGCATGC+TGG + chr1_4:55092070-55092089 Msa0170750:intron 45.0%
!! GTTTCTGGCAGGTTCTCATT+TGG + chr1_4:55092284-55092303 Msa0170750:intron 45.0%
!! GGCAGCACAATTATTTCTGG+TGG - chr1_4:55093185-55093204 None:intergenic 45.0%
TAACAAGAACTTGACCTGGG+TGG - chr1_4:55093327-55093346 None:intergenic 45.0%
ACCCAGGTCAAGTTCTTGTT+AGG + chr1_4:55093326-55093345 Msa0170750:CDS 45.0%
! AATGAAGTGGTTTGTGTCCG+AGG + chr1_4:55093353-55093372 Msa0170750:CDS 45.0%
TGTGTCCGAGGAAAATACTC+CGG + chr1_4:55093365-55093384 Msa0170750:CDS 45.0%
!! TCTTCCCGGAGTATTTTCCT+CGG - chr1_4:55093373-55093392 None:intergenic 45.0%
GGAAAATACTCCGGGAAGAA+TGG + chr1_4:55093374-55093393 Msa0170750:CDS 45.0%
! TGGGTTGAGCAAGTTTCGAA+TGG + chr1_4:55093394-55093413 Msa0170750:CDS 45.0%
AGCAAGTTTCGAATGGAACG+TGG + chr1_4:55093401-55093420 Msa0170750:CDS 45.0%
CTTGTGATATGTGTGGTGTG+TGG + chr1_4:55093489-55093508 Msa0170750:CDS 45.0%
GACTCAAAGCTTAAATCGGG+TGG + chr1_4:55093590-55093609 Msa0170750:CDS 45.0%
CCAGTCTCTCATCTTTACAG+TGG - chr1_4:55093616-55093635 None:intergenic 45.0%
CCACTGTAAAGATGAGAGAC+TGG + chr1_4:55093613-55093632 Msa0170750:CDS 45.0%
GCTAGTGTTACCACAACTAG+TGG + chr1_4:55093635-55093654 Msa0170750:CDS 45.0%
!!! TTTTTTCAATAAATTTAAAT+AGG - chr1_4:55092367-55092386 None:intergenic 5.0%
!! AAAAAATAACAAATTAATTA+GGG + chr1_4:55092381-55092400 Msa0170750:intron 5.0%
GTTATGTGGGGGAGAGATAG+AGG - chr1_4:55087993-55088012 None:intergenic 50.0%
GGGAAGAGAGGATTAGGGTT+TGG - chr1_4:55088141-55088160 None:intergenic 50.0%
AGGGAGGGAAGAGAGGATTA+GGG - chr1_4:55088146-55088165 None:intergenic 50.0%
GAGTTGTGGATCTGAAAGGG+AGG - chr1_4:55088166-55088185 None:intergenic 50.0%
TCTATCATGGTCGTTAGCGG+AGG + chr1_4:55088243-55088262 Msa0170750:exon 50.0%
ACGTCAAGGCAAATAACCGC+CGG - chr1_4:55088507-55088526 None:intergenic 50.0%
ATGGTACGTATTTGGGTGGG+TGG + chr1_4:55089013-55089032 Msa0170750:intron 50.0%
TGGTACGTATTTGGGTGGGT+GGG + chr1_4:55089014-55089033 Msa0170750:intron 50.0%
! TTGGTGGACATCCCTTTGCA+GGG - chr1_4:55089714-55089733 None:intergenic 50.0%
! ATTGGTGGACATCCCTTTGC+AGG - chr1_4:55089715-55089734 None:intergenic 50.0%
! TGGTAACGCTTACTGCACAC+TGG - chr1_4:55089847-55089866 None:intergenic 50.0%
TGTTAGGCTTCCCTCAATGG+GGG + chr1_4:55090024-55090043 Msa0170750:intron 50.0%
TACCCAACCATCCCTCAATG+GGG + chr1_4:55090054-55090073 Msa0170750:intron 50.0%
ATCCCCATTGAGGGATGGTT+GGG - chr1_4:55090059-55090078 None:intergenic 50.0%
TATCCCCATTGAGGGATGGT+TGG - chr1_4:55090060-55090079 None:intergenic 50.0%
ACCATCCCTCAATGGGGATA+TGG + chr1_4:55090060-55090079 Msa0170750:intron 50.0%
TCCATATCCCCATTGAGGGA+TGG - chr1_4:55090064-55090083 None:intergenic 50.0%
! ATGTTTGTTGGTCTGGGGTG+TGG + chr1_4:55090441-55090460 Msa0170750:intron 50.0%
! TGTTTGTTGGTCTGGGGTGT+GGG + chr1_4:55090442-55090461 Msa0170750:intron 50.0%
CTACCCTCTCATGTAGCATG+AGG - chr1_4:55090606-55090625 None:intergenic 50.0%
CATGGTGTAGTCCATGCCAA+TGG + chr1_4:55090849-55090868 Msa0170750:CDS 50.0%
! GGGCACCTTCTTCGAGTTAA+TGG + chr1_4:55090876-55090895 Msa0170750:CDS 50.0%
CGAGTTAATGGCAGAGAAGG+GGG + chr1_4:55090888-55090907 Msa0170750:CDS 50.0%
GATCGCCTATGCAAGACTCT+TGG + chr1_4:55090951-55090970 Msa0170750:CDS 50.0%
TATCCCCACTCACCATACCA+TGG - chr1_4:55091474-55091493 None:intergenic 50.0%
TGGCAGCTATTGTCTCACAC+AGG + chr1_4:55091506-55091525 Msa0170750:CDS 50.0%
TGGGAGAGGAAGATGGACAA+GGG - chr1_4:55091570-55091589 None:intergenic 50.0%
TGAGTGAGGCTTCTGTTCCT+GGG - chr1_4:55091589-55091608 None:intergenic 50.0%
ATATCCTGCACACGTGAGTG+AGG - chr1_4:55091603-55091622 None:intergenic 50.0%
GCTCATGCTCTGACAAAGAC+CGG - chr1_4:55091638-55091657 None:intergenic 50.0%
!!! ATCAATCCGCCGCTTTTTGC+AGG - chr1_4:55091745-55091764 None:intergenic 50.0%
GGCAGTGTCTGGGTCTAATT+GGG + chr1_4:55091839-55091858 Msa0170750:CDS 50.0%
TCTGGGTCTAATTGGGTGAG+TGG + chr1_4:55091846-55091865 Msa0170750:CDS 50.0%
GTGAGTGGTCGAGCTCTTAA+GGG + chr1_4:55091861-55091880 Msa0170750:CDS 50.0%
!! TAAGGGTGCTGTTTGCAAGG+TGG + chr1_4:55091878-55091897 Msa0170750:CDS 50.0%
TGGAATCACTTTCACGAGGG+TGG + chr1_4:55092230-55092249 Msa0170750:intron 50.0%
GAGGTTGAGCCCTGAAATAG+TGG + chr1_4:55092713-55092732 Msa0170750:intron 50.0%
ACGACTCTCTGCTTCATCCT+TGG + chr1_4:55092970-55092989 Msa0170750:CDS 50.0%
TCAGACACTGTGGCGTTCAT+GGG - chr1_4:55093206-55093225 None:intergenic 50.0%
GACGAACTAGTTGGCTACAG+CGG + chr1_4:55093290-55093309 Msa0170750:CDS 50.0%
GTGTCCGAGGAAAATACTCC+GGG + chr1_4:55093366-55093385 Msa0170750:CDS 50.0%
CTTGCTCAACCCATTCTTCC+CGG - chr1_4:55093387-55093406 None:intergenic 50.0%
GAATGGAACGTGGACTTGAG+AGG + chr1_4:55093411-55093430 Msa0170750:CDS 50.0%
TGTGGGGCTAAGGATGATGA+TGG + chr1_4:55093452-55093471 Msa0170750:CDS 50.0%
GTGATATGTGTGGTGTGTGG+CGG + chr1_4:55093492-55093511 Msa0170750:CDS 50.0%
!! CAAACAAAACGGGCTGGAAC+AGG - chr1_4:55093551-55093570 None:intergenic 50.0%
CTCGAACAAACAAAACGGGC+TGG - chr1_4:55093557-55093576 None:intergenic 50.0%
!! AGATAGGCATTGGTGGGACA+GGG + chr1_4:55093772-55093791 Msa0170750:three_prime_UTR 50.0%
GATAGAGGAGGAGAGGAGAG+TGG - chr1_4:55087978-55087997 None:intergenic 55.0%
ATGTGGGGGAGAGATAGAGG+AGG - chr1_4:55087990-55088009 None:intergenic 55.0%
GAGGGAGGGAAGAGAGGATT+AGG - chr1_4:55088147-55088166 None:intergenic 55.0%
GTGGATCTGAAAGGGAGGGA+GGG - chr1_4:55088161-55088180 None:intergenic 55.0%
TGTGGATCTGAAAGGGAGGG+AGG - chr1_4:55088162-55088181 None:intergenic 55.0%
GAGATCTCGGTGGAGAGTTG+TGG - chr1_4:55088180-55088199 None:intergenic 55.0%
TAGAAGAGGTTACAGGCGCG+TGG - chr1_4:55088227-55088246 None:intergenic 55.0%
!! GAAACTCTCTGAAGCGGCGA+GGG - chr1_4:55088340-55088359 None:intergenic 55.0%
!! AGAAACTCTCTGAAGCGGCG+AGG - chr1_4:55088341-55088360 None:intergenic 55.0%
GCCGCTTCAGAGAGTTTCTC+CGG + chr1_4:55088342-55088361 Msa0170750:CDS 55.0%
! GCCGGAGAAACTCTCTGAAG+CGG - chr1_4:55088346-55088365 None:intergenic 55.0%
GCTTCAGAGAGTTTCTCCGG+CGG + chr1_4:55088345-55088364 Msa0170750:CDS 55.0%
AAGTGCGGAAACAACGCGGA+AGG - chr1_4:55088426-55088445 None:intergenic 55.0%
CAGCAAGTGCGGAAACAACG+CGG - chr1_4:55088430-55088449 None:intergenic 55.0%
! TGTTTCCGCACTTGCTGACG+TGG + chr1_4:55088433-55088452 Msa0170750:CDS 55.0%
ATCTGCCACGTCAGCAAGTG+CGG - chr1_4:55088441-55088460 None:intergenic 55.0%
TGGCAGATCCTCTTCCGTGT+CGG + chr1_4:55088453-55088472 Msa0170750:CDS 55.0%
TGATCTCACCGACACGGAAG+AGG - chr1_4:55088464-55088483 None:intergenic 55.0%
CATCGGTGATCTCACCGACA+CGG - chr1_4:55088470-55088489 None:intergenic 55.0%
! GTGTCGGTGAGATCACCGAT+GGG + chr1_4:55088469-55088488 Msa0170750:CDS 55.0%
TGTCGGTGAGATCACCGATG+GGG + chr1_4:55088470-55088489 Msa0170750:CDS 55.0%
GATCACCGATGGGGGTGAAT+CGG + chr1_4:55088479-55088498 Msa0170750:CDS 55.0%
ATCACCGATGGGGGTGAATC+GGG + chr1_4:55088480-55088499 Msa0170750:CDS 55.0%
TCCGGTTTCTATCCGGTTGC+CGG + chr1_4:55088641-55088660 Msa0170750:intron 55.0%
ACCGGCAACCGGATAGAAAC+CGG - chr1_4:55088645-55088664 None:intergenic 55.0%
GGTGGTAGAAAACCGGCAAC+CGG - chr1_4:55088656-55088675 None:intergenic 55.0%
TACGTATTTGGGTGGGTGGG+TGG + chr1_4:55089017-55089036 Msa0170750:intron 55.0%
TATTTGGGTGGGTGGGTGGT+GGG + chr1_4:55089021-55089040 Msa0170750:intron 55.0%
GAACTTGTGCCCCCTGCAAA+GGG + chr1_4:55089700-55089719 Msa0170750:intron 55.0%
! TGGTGGACATCCCTTTGCAG+GGG - chr1_4:55089713-55089732 None:intergenic 55.0%
GCTGATGGGAGATCCATTGG+TGG + chr1_4:55089880-55089899 Msa0170750:CDS 55.0%
ACAGCTAGTGAAGAAGCGGC+TGG + chr1_4:55090499-55090518 Msa0170750:intron 55.0%
CAGCTAGTGAAGAAGCGGCT+GGG + chr1_4:55090500-55090519 Msa0170750:intron 55.0%
AGCTAGTGAAGAAGCGGCTG+GGG + chr1_4:55090501-55090520 Msa0170750:intron 55.0%
GGTGCCCATAACCATTGGCA+TGG - chr1_4:55090863-55090882 None:intergenic 55.0%
CTGGGAGAGGAAGATGGACA+AGG - chr1_4:55091571-55091590 None:intergenic 55.0%
CTTGTCCATCTTCCTCTCCC+AGG + chr1_4:55091569-55091588 Msa0170750:CDS 55.0%
CTGTTCCTGGGAGAGGAAGA+TGG - chr1_4:55091577-55091596 None:intergenic 55.0%
GTGAGTGAGGCTTCTGTTCC+TGG - chr1_4:55091590-55091609 None:intergenic 55.0%
!! AAGCGGCGGATTGATGCTTC+TGG + chr1_4:55091750-55091769 Msa0170750:CDS 55.0%
GAGTGACGTTGAACGTGTGG+AGG + chr1_4:55091794-55091813 Msa0170750:CDS 55.0%
!! AAGCCATGCTCAGAGTGCTG+CGG + chr1_4:55091817-55091836 Msa0170750:CDS 55.0%
GGGCAGTGTCTGGGTCTAAT+TGG + chr1_4:55091838-55091857 Msa0170750:CDS 55.0%
GGTGAGTGGTCGAGCTCTTA+AGG + chr1_4:55091860-55091879 Msa0170750:CDS 55.0%
! TCAGAAGGACGCTTTGAGCC+TGG - chr1_4:55092918-55092937 None:intergenic 55.0%
GTCAGACACTGTGGCGTTCA+TGG - chr1_4:55093207-55093226 None:intergenic 55.0%
CGGTGTAGAAGATTCCACCC+AGG + chr1_4:55093310-55093329 Msa0170750:CDS 55.0%
TGGAACGTGGACTTGAGAGG+TGG + chr1_4:55093414-55093433 Msa0170750:CDS 55.0%
TGGACTGTCGAGTGCAACTG+TGG + chr1_4:55093434-55093453 Msa0170750:CDS 55.0%
GGACTGTCGAGTGCAACTGT+GGG + chr1_4:55093435-55093454 Msa0170750:CDS 55.0%
GACTGTCGAGTGCAACTGTG+GGG + chr1_4:55093436-55093455 Msa0170750:CDS 55.0%
! TGGCGGCACACTAGGTGTTT+TGG + chr1_4:55093509-55093528 Msa0170750:CDS 55.0%
GCTGGAACAGGAGCAGTATC+AGG - chr1_4:55093539-55093558 None:intergenic 55.0%
!! CAGATAGGCATTGGTGGGAC+AGG + chr1_4:55093771-55093790 Msa0170750:three_prime_UTR 55.0%
GGGGAGAGATAGAGGAGGAG+AGG - chr1_4:55087985-55088004 None:intergenic 60.0%
GAAAGGGAGGGAGGGAAGAG+AGG - chr1_4:55088153-55088172 None:intergenic 60.0%
TGGCGCGTGAGGTGAGATCT+CGG - chr1_4:55088193-55088212 None:intergenic 60.0%
ACCTCACGCGCCACCAAAAC+TGG + chr1_4:55088200-55088219 Msa0170750:five_prime_UTR 60.0%
!!! TCCAGTTTTGGTGGCGCGTG+AGG - chr1_4:55088204-55088223 None:intergenic 60.0%
! ACAGGCGCGTGGTCCAGTTT+TGG - chr1_4:55088216-55088235 None:intergenic 60.0%
AAGCGGCGAGGGATGGTGAA+GGG - chr1_4:55088329-55088348 None:intergenic 60.0%
! CGGTGGAAGAAGCGCGTACT+TGG - chr1_4:55088403-55088422 None:intergenic 60.0%
TGCGGAAACAACGCGGAAGG+CGG - chr1_4:55088423-55088442 None:intergenic 60.0%
! CGTGTCGGTGAGATCACCGA+TGG + chr1_4:55088468-55088487 Msa0170750:CDS 60.0%
GTCGGTGAGATCACCGATGG+GGG + chr1_4:55088471-55088490 Msa0170750:CDS 60.0%
GTATTTGGGTGGGTGGGTGG+TGG + chr1_4:55089020-55089039 Msa0170750:intron 60.0%
!! GGGTGGTGGGTCCCTTAAGA+AGG + chr1_4:55089034-55089053 Msa0170750:intron 60.0%
CGAACTTGTGCCCCCTGCAA+AGG + chr1_4:55089699-55089718 Msa0170750:intron 60.0%
GGTGGACATCCCTTTGCAGG+GGG - chr1_4:55089712-55089731 None:intergenic 60.0%
TGAAGAAGCGGCTGGGGTGT+GGG + chr1_4:55090507-55090526 Msa0170750:intron 60.0%
CAAGTCAGTGACAGCCGGAC+AGG - chr1_4:55091142-55091161 None:intergenic 60.0%
!! GTCCGGCTGTCACTGACTTG+CGG + chr1_4:55091142-55091161 Msa0170750:intron 60.0%
CACCGCAAGTCAGTGACAGC+CGG - chr1_4:55091147-55091166 None:intergenic 60.0%
GAGGCTTCTGTTCCTGGGAG+AGG - chr1_4:55091584-55091603 None:intergenic 60.0%
GAAGCCTCACTCACGTGTGC+AGG + chr1_4:55091596-55091615 Msa0170750:CDS 60.0%
!! AGCCATGCTCAGAGTGCTGC+GGG + chr1_4:55091818-55091837 Msa0170750:CDS 60.0%
CGAGTGCAACTGTGGGGCTA+AGG + chr1_4:55093442-55093461 Msa0170750:CDS 60.0%
CGCGTGAGGTGAGATCTCGG+TGG - chr1_4:55088190-55088209 None:intergenic 65.0%
!! GGCGCGTGGTCCAGTTTTGG+TGG - chr1_4:55088213-55088232 None:intergenic 65.0%
GAAGCGGCGAGGGATGGTGA+AGG - chr1_4:55088330-55088349 None:intergenic 65.0%
!! CTCTCTGAAGCGGCGAGGGA+TGG - chr1_4:55088336-55088355 None:intergenic 65.0%
GGAAACAACGCGGAAGGCGG+TGG - chr1_4:55088420-55088439 None:intergenic 65.0%
CGGTCCCGATTCACCCCCAT+CGG - chr1_4:55088487-55088506 None:intergenic 65.0%
CGATGGGGGTGAATCGGGAC+CGG + chr1_4:55088485-55088504 Msa0170750:CDS 65.0%
GTGAAGAAGCGGCTGGGGTG+TGG + chr1_4:55090506-55090525 Msa0170750:intron 65.0%
TGCCCGCAGCACTCTGAGCA+TGG - chr1_4:55091823-55091842 None:intergenic 65.0%
!! AGAGTGCTGCGGGCAGTGTC+TGG + chr1_4:55091828-55091847 Msa0170750:CDS 65.0%
! GAGTGCTGCGGGCAGTGTCT+GGG + chr1_4:55091829-55091848 Msa0170750:CDS 65.0%
GTGGTGTGTGGCGGCACACT+AGG + chr1_4:55093501-55093520 Msa0170750:CDS 65.0%
TGGGGGTGAATCGGGACCGG+CGG + chr1_4:55088488-55088507 Msa0170750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55087882 55093872 55087882 ID=Msa0170750;Name=Msa0170750
chr1_4 mRNA 55087882 55093872 55087882 ID=Msa0170750-mRNA-1;Parent=Msa0170750;Name=Msa0170750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=367|1|1|1|1|1|5|169|707
chr1_4 exon 55087882 55088585 55087882 ID=Msa0170750-mRNA-1:exon:16457;Parent=Msa0170750-mRNA-1
chr1_4 exon 55089830 55089956 55089830 ID=Msa0170750-mRNA-1:exon:16458;Parent=Msa0170750-mRNA-1
chr1_4 exon 55090764 55090979 55090764 ID=Msa0170750-mRNA-1:exon:16459;Parent=Msa0170750-mRNA-1
chr1_4 exon 55091395 55092009 55091395 ID=Msa0170750-mRNA-1:exon:16460;Parent=Msa0170750-mRNA-1
chr1_4 exon 55092875 55093872 55092875 ID=Msa0170750-mRNA-1:exon:16461;Parent=Msa0170750-mRNA-1
chr1_4 five_prime_UTR 55087882 55088248 55087882 ID=Msa0170750-mRNA-1:five_prime_utr;Parent=Msa0170750-mRNA-1
chr1_4 CDS 55088249 55088585 55088249 ID=Msa0170750-mRNA-1:cds;Parent=Msa0170750-mRNA-1
chr1_4 CDS 55089830 55089956 55089830 ID=Msa0170750-mRNA-1:cds;Parent=Msa0170750-mRNA-1
chr1_4 CDS 55090764 55090979 55090764 ID=Msa0170750-mRNA-1:cds;Parent=Msa0170750-mRNA-1
chr1_4 CDS 55091395 55092009 55091395 ID=Msa0170750-mRNA-1:cds;Parent=Msa0170750-mRNA-1
chr1_4 CDS 55092875 55093703 55092875 ID=Msa0170750-mRNA-1:cds;Parent=Msa0170750-mRNA-1
chr1_4 three_prime_UTR 55093704 55093872 55093704 ID=Msa0170750-mRNA-1:three_prime_utr;Parent=Msa0170750-mRNA-1
Gene Sequence

>Msa0170750

ATGGTCGTTAGCGGAGGCAAATCCTTAAAACGTATGAAAAGAAGAGTCACCGCCGATTACCACGATTTCTTTTCATTCCCTTCACCATCCCTCGCCGCTTCAGAGAGTTTCTCCGGCGGACCTTTTCGTTCTAATGTTCACTCTTTTCTCACCAAGTACGCGCTTCTTCCACCGCCTTCCGCGTTGTTTCCGCACTTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGATGGGGGTGAATCGGGACCGGCGGTTATTTGCCTTGACGTTGTGGAAGAAGATGTTGCTAGATCCAGATCTGTGTATTGTGATCAGTGCCGAGTTTTTGGCTGCAGCGGAAATCCAGTGTGCAGTAAGCGTTACCATTTTATAATCAAAGCTGATGGGAGATCCATTGGTGGATACCACAAACCATGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGTGCAAGTCATGTAACCATGTGACAACCAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGAGTTAATGGCAGAGAAGGGGGATCTAGATATCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGCTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATACGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGAAATCCATGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGCAGCTATTGTCTCACACAGGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCATCTTCCTCTCCCAGGAACAGAAGCCTCACTCACGTGTGCAGGATATGATTTTGTATTACCGGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGTTGCATGATGCTCGCAAGACAGCCTCTAAGTCTGATGACATAACCTGCAAAAAGCGGCGGATTGATGCTTCTGGATTATCAAGTTCTTGGGAAAAGAGTGACGTTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGGGCAGTGTCTGGGTCTAATTGGGTGAGTGGTCGAGCTCTTAAGGGTGCTGTTTGCAAGGTGGCCTCTCCAGAGCTTCTTGATTATTGCCTTTCTGAACTGGGAGGAAAAGTAGTCTATGGTGGGATTGTTAATAGCAGATGCAATCCTCAAACTGGAGTGTATGAATTCAGGATTGATGCTACAAATGTTTTTATGGCCAACAATAATTCTCCAGGCTCAAAGCGTCCTTCTGAAGAGAATATCCTGCAATGCTTGAGATATTTATACGACTCTCTGCTTCATCCTTGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCTCAGAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGCTCTGAGATGCCGCCAGTGTCAGATTTGTCTAAATTACGTATCTCATGTCAGGTTGAACTAGTTGACCAATCTGAAGATACTGAAGCCAAAATTCCACCAGAAATAATTGTGCTGCCCATGAACGCCACAGTGTCTGACCTAAAGATTGAAGCAGCAAAAGCTTTTCAGGAAGTATATCTAATGTTTAGAAAATTTCAAGTTGACGAACTAGTTGGCTACAGCGGTGTAGAAGATTCCACCCAGGTCAAGTTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATACTCCGGGAAGAATGGGTTGAGCAAGTTTCGAATGGAACGTGGACTTGAGAGGTGGACTGTCGAGTGCAACTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATATGTGTGGTGTGTGGCGGCACACTAGGTGTTTTGGCATTCCTGATACTGCTCCTGTTCCAGCCCGTTTTGTTTGTTCGAGATGCCAAAACTGTGACTCAAAGCTTAAATCGGGTGGCCACTGTAAAGATGAGAGACTGGCTAGTGTTACCACAACTAGTGGTAGTTACATGGGAAACAGCTTTTCAGTGCCTTCTAATATTCGTTAA
Protein sequence

>Msa0170750

MVVSGGKSLKRMKRRVTADYHDFFSFPSPSLAASESFSGGPFRSNVHSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGGESGPAVICLDVVEEDVARSRSVYCDQCRVFGCSGNPVCSKRYHFIIKADGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGARKVSVMDVSKKYGLEYRLLHAIMKGNPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYRSLSEHELVNMRDLFCFLMGLLHDARKTASKSDDITCKKRRIDASGLSSSWEKSDVERVEEAMLRVLRAVSGSNWVSGRALKGAVCKVASPELLDYCLSELGGKVVYGGIVNSRCNPQTGVYEFRIDATNVFMANNNSPGSKRPSEENILQCLRYLYDSLLHPWMMLNYVDEETRTLAMSSAQKLLDCKQLVKDYCSEMPPVSDLSKLRISCQVELVDQSEDTEAKIPPEIIVLPMNATVSDLKIEAAKAFQEVYLMFRKFQVDELVGYSGVEDSTQVKFLLGSNEVVCVRGKYSGKNGLSKFRMERGLERWTVECNCGAKDDDGERMMACDMCGVWRHTRCFGIPDTAPVPARFVCSRCQNCDSKLKSGGHCKDERLASVTTTSGSYMGNSFSVPSNIR*