AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078190 MtrunA17_Chr1g0188421 93.322 584 20 1 143 726 1 565 0.0 1121
Msa0078190 MtrunA17_Chr4g0017901 48.189 718 331 11 2 706 1 690 0.0 663
Msa0078190 MtrunA17_Chr5g0434341 29.920 752 372 20 13 691 35 704 4.35e-89 295
Msa0078190 MtrunA17_Chr1g0188411 99.115 113 1 0 1 113 1 113 7.60e-74 234
Msa0078190 MtrunA17_Chr5g0417171 27.790 457 294 13 259 688 1 448 4.81e-50 181
Msa0078190 MtrunA17_Chr5g0417181 57.407 54 22 1 195 248 11 63 8.71e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078190 AT1G33420.1 48.338 722 312 19 2 712 3 674 0.0 650
Msa0078190 AT1G33420.2 48.600 607 256 15 113 712 12 569 0.0 551
Msa0078190 AT5G22260.1 28.931 636 376 16 86 693 78 665 1.33e-82 276
Msa0078190 AT1G66170.1 31.547 653 330 19 83 686 69 653 2.37e-80 271
Msa0078190 AT2G01810.1 27.019 718 380 23 39 686 39 682 5.32e-69 240
Msa0078190 AT2G07714.1 34.746 118 74 1 233 347 1 118 1.59e-20 90.5
Msa0078190 ATMG00550.1 31.522 92 60 1 259 347 1 92 9.30e-12 64.3

Find 249 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCTTGTTCATATTTC+AGG 0.121731 1_2:+55565603 Msa0078190:three_prime_UTR
AATTATTTCTGGTGGAATTT+TGG 0.142354 1_2:-55564983 None:intergenic
CTAATTTGCCTTGCCATTTA+TGG 0.151482 1_2:+55559776 Msa0078190:five_prime_UTR
TAGACCGGGCTTCTTTATTT+TGG 0.164988 1_2:-55559756 None:intergenic
GTTGCCATATTATGGATTTC+TGG 0.176048 1_2:+55562738 Msa0078190:CDS
TCTTTCTGGTTGCCATATTA+TGG 0.177159 1_2:+55562730 Msa0078190:CDS
AGAGTGCTGCGGGCAGTGTC+TGG 0.207906 1_2:+55563638 Msa0078190:CDS
GTGAGTGAGGCTTCTGTTCC+TGG 0.237167 1_2:-55563397 None:intergenic
GGTGAGTGGGGATATAATTT+TGG 0.242939 1_2:+55563290 Msa0078190:CDS
ACCTCACGCGCCACCAAAAC+TGG 0.247755 1_2:+55560061 Msa0078190:five_prime_UTR
AATGCCTATCTGTTATTTAC+AGG 0.248478 1_2:-55565569 None:intergenic
TGTTATTTACAGGCTATTTC+AGG 0.254200 1_2:-55565559 None:intergenic
TGATTATTGCCTTTCTGAAC+TGG 0.256477 1_2:+55563727 Msa0078190:CDS
CATCAGCTTTGATTATAAAA+TGG 0.259538 1_2:-55561676 None:intergenic
GGGCACCTTCTTCGAGTTAA+TGG 0.259647 1_2:+55562686 Msa0078190:CDS
GGGCAGTGTCTGGGTCTAAT+TGG 0.261350 1_2:+55563648 Msa0078190:CDS
ATGGGCAGCACAATTATTTC+TGG 0.273746 1_2:-55564994 None:intergenic
CTTCTGGATTATCAAGTTCT+TGG 0.299672 1_2:+55563576 Msa0078190:CDS
AGCGAGTTTACCGCCATAAA+TGG 0.321471 1_2:-55559789 None:intergenic
AAGCGGCGGATTGATGCTTC+TGG 0.330006 1_2:+55563560 Msa0078190:CDS
CTTTGTTAGGCTTCCCTCAA+TGG 0.332853 1_2:+55561833 Msa0078190:intron
CTGTGACTCAAAGCTTAAAT+CGG 0.333227 1_2:+55565395 Msa0078190:CDS
GGTGAGTGGTCGAGCTCTTA+AGG 0.337486 1_2:+55563670 Msa0078190:CDS
GAAGATGGACAAGGGTAGAT+TGG 0.339049 1_2:-55563369 None:intergenic
TTGCCATATTATGGATTTCT+GGG 0.346640 1_2:+55562739 Msa0078190:CDS
TTCTGTACATACAAACAAAT+GGG 0.351608 1_2:+55565645 Msa0078190:three_prime_UTR
GTCAGACACTGTGGCGTTCA+TGG 0.360223 1_2:-55565013 None:intergenic
GATCCCAGAAATCCATAATA+TGG 0.360486 1_2:-55562742 None:intergenic
TTTGTTAGGCTTCCCTCAAT+GGG 0.361104 1_2:+55561834 Msa0078190:intron
ACAGGCGCGTGGTCCAGTTT+TGG 0.362719 1_2:-55560074 None:intergenic
CTTCTGTACATACAAACAAA+TGG 0.364173 1_2:+55565644 Msa0078190:three_prime_UTR
ACCCAGGTCAAGTTCTTGTT+AGG 0.368519 1_2:+55565135 Msa0078190:CDS
CTTGCTCAACCCATTCTTCC+CGG 0.379282 1_2:-55565193 None:intergenic
TAAGCTTTGAGTCACAGTTT+TGG 0.381961 1_2:-55565389 None:intergenic
CCATGGATTTCCCTTCATAA+TGG 0.392563 1_2:-55563264 None:intergenic
GGAAAATACTCCGGGAAGAA+TGG 0.394505 1_2:+55565183 Msa0078190:CDS
GTGCCTTCTAATATTCGTTA+AGG 0.394542 1_2:+55565492 Msa0078190:CDS
AGCAGATGCAATCCTCAAAC+TGG 0.397969 1_2:+55563782 Msa0078190:CDS
CAAACAAAACGGGCTGGAAC+AGG 0.401043 1_2:-55565357 None:intergenic
ATCCCCATTGAGGGATGGTT+GGG 0.403089 1_2:-55561868 None:intergenic
ATGGCGGTAAACTCGCTTAA+CGG 0.404145 1_2:+55559795 Msa0078190:five_prime_UTR
TATTCTTCTTGTATGTTATG+TGG 0.405748 1_2:-55559877 None:intergenic
ATAAATATCTCAAGCATTGC+AGG 0.407912 1_2:-55564756 None:intergenic
GCTGGAACAGGAGCAGTATC+AGG 0.408996 1_2:-55565345 None:intergenic
ACGACTCTCTGCTTCATCCT+TGG 0.409786 1_2:+55564779 Msa0078190:CDS
CACAACTAGTGGTAGTTACA+TGG 0.412758 1_2:+55565455 Msa0078190:CDS
CAGATAGGCATTGGTGGGAC+AGG 0.414785 1_2:+55565580 Msa0078190:three_prime_UTR
TCAGAAGGACGCTTTGAGCC+TGG 0.415981 1_2:-55564724 None:intergenic
TGGCGGCACACTAGGTGTTT+TGG 0.417600 1_2:+55565318 Msa0078190:CDS
GGTTATGTCATCAGACTTAG+AGG 0.417691 1_2:-55563531 None:intergenic
AATTCATACACTCCAGTTTG+AGG 0.420254 1_2:-55563794 None:intergenic
TGGTTGTCGTTGGATTAATC+TGG 0.420681 1_2:-55559976 None:intergenic
TTCTGGATTATCAAGTTCTT+GGG 0.428561 1_2:+55563577 Msa0078190:CDS
GTAGTCCATGCCAATGGTTA+TGG 0.431968 1_2:+55562665 Msa0078190:CDS
TGAAAAGAAATCGTGGTAAT+CGG 0.432279 1_2:-55560162 None:intergenic
AAGATGGTTATTGAGTTTGA+TGG 0.432591 1_2:-55559996 None:intergenic
CTGGGAGGAAAAGTAGTCTA+TGG 0.434257 1_2:+55563746 Msa0078190:CDS
GAGTGCTGCGGGCAGTGTCT+GGG 0.436397 1_2:+55563639 Msa0078190:CDS
AAACTGGAGTGTATGAATTC+AGG 0.437264 1_2:+55563798 Msa0078190:CDS
ATTCTTCTTGTATGTTATGT+GGG 0.439979 1_2:-55559876 None:intergenic
GTGAGTGGTCGAGCTCTTAA+GGG 0.441244 1_2:+55563671 Msa0078190:CDS
TGAAAGGGAGGGAGGGAAGA+TGG 0.442192 1_2:-55560012 None:intergenic
GGCAGTGTCTGGGTCTAATT+GGG 0.443159 1_2:+55563649 Msa0078190:CDS
TGGCTTCAGTATCTTCAGAT+TGG 0.443173 1_2:-55564963 None:intergenic
ATACCCAACCATCCCTCAAT+GGG 0.446209 1_2:+55561865 Msa0078190:CDS
AGCATGAGCTTGTAAATATG+AGG 0.447036 1_2:+55563459 Msa0078190:CDS
TAGTCCATGCCAATGGTTAT+GGG 0.447768 1_2:+55562666 Msa0078190:CDS
AGGCAATAATCAAGAAGCTC+TGG 0.453831 1_2:-55563716 None:intergenic
ATACCTTAACGAATATTAGA+AGG 0.457774 1_2:-55565495 None:intergenic
ATGGATGTTTCGAAGAAATA+CGG 0.460142 1_2:+55563218 Msa0078190:CDS
TTTCAAGTTGACGAACTAGT+TGG 0.465947 1_2:+55565090 Msa0078190:CDS
GATTATTGCCTTTCTGAACT+GGG 0.470034 1_2:+55563728 Msa0078190:CDS
GGCATCTCGAACAAACAAAA+CGG 0.474585 1_2:-55565368 None:intergenic
TAAATTACGTATCTCATGTC+AGG 0.475811 1_2:+55564927 Msa0078190:CDS
ATGGCCAACAATAATTCTCC+AGG 0.475823 1_2:+55564706 Msa0078190:CDS
CGGTGGAAGAAGCGCGTACT+TGG 0.477965 1_2:-55560261 None:intergenic
GATAGAGGAGGAGAGGAGAG+TGG 0.483741 1_2:-55559848 None:intergenic
TGATCTCACCGACACGGAAG+AGG 0.494276 1_2:-55560322 None:intergenic
AAATCCATGGTATGGTGAGT+GGG 0.494538 1_2:+55563277 Msa0078190:CDS
GATGACTTGTGTTCTCTAGT+TGG 0.495311 1_2:-55562631 None:intergenic
GTGGTGTGTGGCGGCACACT+AGG 0.496354 1_2:+55565310 Msa0078190:CDS
CATCCCCATTGAGGGATGGT+TGG 0.497101 1_2:-55561869 None:intergenic
GCATCTCGAACAAACAAAAC+GGG 0.498064 1_2:-55565367 None:intergenic
TATACCCAACCATCCCTCAA+TGG 0.499501 1_2:+55561864 Msa0078190:CDS
CAAGATTCCATCCCCATTGA+GGG 0.500286 1_2:-55561877 None:intergenic
CTGATCACAATACACAGATC+TGG 0.501969 1_2:-55560411 None:intergenic
GTGGATCTGAAAGGGAGGGA+GGG 0.502445 1_2:-55560019 None:intergenic
TGAGCCTGGAGAATTATTGT+TGG 0.504253 1_2:-55564710 None:intergenic
CACAGCACATACATGGTTTG+TGG 0.505639 1_2:-55561718 None:intergenic
ATAGCCTGTAAATAACAGAT+AGG 0.506489 1_2:+55565565 Msa0078190:three_prime_UTR
GAAAATACTCCGGGAAGAAT+GGG 0.508237 1_2:+55565184 Msa0078190:CDS
TCTTAAGGGTGCTGTTTGCA+AGG 0.508491 1_2:+55563685 Msa0078190:CDS
CTTCGAGTTAATGGCAGAGA+AGG 0.508940 1_2:+55562695 Msa0078190:CDS
CTGTTCCTGGGAGAGGAAGA+TGG 0.508967 1_2:-55563384 None:intergenic
TGTGGATCTGAAAGGGAGGG+AGG 0.509744 1_2:-55560020 None:intergenic
TTGAGTTTGATGGTTGTCGT+TGG 0.511242 1_2:-55559986 None:intergenic
CTTGCTCCATGCCATTATGA+AGG 0.511393 1_2:+55563253 Msa0078190:CDS
CTCTCTGAAGCGGCGAGGGA+TGG 0.512575 1_2:-55560194 None:intergenic
TGCCCGCAGCACTCTGAGCA+TGG 0.513183 1_2:-55563630 None:intergenic
GAAGCCTCACTCACGTGTGC+AGG 0.514046 1_2:+55563406 Msa0078190:CDS
TTCGAGTTAATGGCAGAGAA+GGG 0.516352 1_2:+55562696 Msa0078190:CDS
TCAGACACTGTGGCGTTCAT+GGG 0.519152 1_2:-55565012 None:intergenic
TGTAAATAACAGATAGGCAT+TGG 0.520470 1_2:+55565571 Msa0078190:three_prime_UTR
GAAACTCTCTGAAGCGGCGA+GGG 0.523140 1_2:-55560198 None:intergenic
AGCCATGCTCAGAGTGCTGC+GGG 0.524086 1_2:+55563628 Msa0078190:CDS
GGGGAGAGATAGAGGAGGAG+AGG 0.525352 1_2:-55559855 None:intergenic
GGTTATTTGCCTTGACGTTG+TGG 0.525726 1_2:+55560370 Msa0078190:CDS
GAGGCTTCTGTTCCTGGGAG+AGG 0.525836 1_2:-55563391 None:intergenic
AAAGCTGATGGGAGATCCAT+TGG 0.526083 1_2:+55561689 Msa0078190:CDS
CGAGTGCAACTGTGGGGCTA+AGG 0.528208 1_2:+55565251 Msa0078190:CDS
CTCGAACAAACAAAACGGGC+TGG 0.528227 1_2:-55565363 None:intergenic
AATGGCAAGGCAAATTAGAC+CGG 0.528363 1_2:-55559771 None:intergenic
GTGTCCGAGGAAAATACTCC+GGG 0.528936 1_2:+55565175 Msa0078190:CDS
GCCTGTAACCTCTTCTATCA+TGG 0.529709 1_2:+55560091 Msa0078190:exon
GAGTGAACATTAGAACGAAA+AGG 0.529732 1_2:-55560230 None:intergenic
GGCAGCACAATTATTTCTGG+TGG 0.530349 1_2:-55564991 None:intergenic
TGTGACTCAAAGCTTAAATC+GGG 0.530463 1_2:+55565396 Msa0078190:CDS
CCAGTGATGATGTTGAAGAC+TGG 0.530691 1_2:+55562600 Msa0078190:CDS
GAGTTGTGGATCTGAAAGGG+AGG 0.535893 1_2:-55560024 None:intergenic
TGAGTGAGGCTTCTGTTCCT+GGG 0.540825 1_2:-55563396 None:intergenic
TGGACTGTCGAGTGCAACTG+TGG 0.541774 1_2:+55565243 Msa0078190:CDS
ACAAGATTCCATCCCCATTG+AGG 0.543048 1_2:-55561878 None:intergenic
TTCTTCTTGTATGTTATGTG+GGG 0.543399 1_2:-55559875 None:intergenic
GGAGAGTTGTGGATCTGAAA+GGG 0.546759 1_2:-55560027 None:intergenic
TCTTCTATCATGGTCGTTAG+CGG 0.547897 1_2:+55560101 Msa0078190:exon
ATCTGCCACGTCAGCAAGTG+CGG 0.548221 1_2:-55560299 None:intergenic
ATGAAGGGAAATCCATGGTA+TGG 0.549939 1_2:+55563269 Msa0078190:CDS
ACCATGATAGAAGAGGTTAC+AGG 0.551059 1_2:-55560092 None:intergenic
CTTGTCCATCTTCCTCTCCC+AGG 0.551423 1_2:+55563379 Msa0078190:CDS
TATGCAAGACACTTGGAGCT+AGG 0.552164 1_2:+55562768 Msa0078190:CDS
GAAATCCATGGTATGGTGAG+TGG 0.552195 1_2:+55563276 Msa0078190:CDS
AATGAAGTGGTTTGTGTCCG+AGG 0.552271 1_2:+55565162 Msa0078190:CDS
AGATAGGCATTGGTGGGACA+GGG 0.552999 1_2:+55565581 Msa0078190:three_prime_UTR
AAGAAGGTGCCCATAACCAT+TGG 0.553682 1_2:-55562675 None:intergenic
GGACTGTCGAGTGCAACTGT+GGG 0.555876 1_2:+55565244 Msa0078190:CDS
GAGATCTCGGTGGAGAGTTG+TGG 0.556584 1_2:-55560038 None:intergenic
GCCGCTTCAGAGAGTTTCTC+CGG 0.557550 1_2:+55560203 Msa0078190:CDS
CTCTGCCATTAACTCGAAGA+AGG 0.560242 1_2:-55562691 None:intergenic
CGTGTCGGTGAGATCACCGA+TGG 0.560339 1_2:+55560329 Msa0078190:CDS
TGCAGGATATTCTCTTCAGA+AGG 0.560841 1_2:-55564739 None:intergenic
GAAGCGGCGAGGGATGGTGA+AGG 0.562556 1_2:-55560188 None:intergenic
GACTTGTGTTCTCTAGTTGG+TGG 0.563261 1_2:-55562628 None:intergenic
CAACCATCCCTCAATGGGGA+TGG 0.564228 1_2:+55561870 Msa0078190:CDS
CCAGTCTTCAACATCATCAC+TGG 0.564657 1_2:-55562600 None:intergenic
CAGTGATGATGTTGAAGACT+GGG 0.564685 1_2:+55562601 Msa0078190:CDS
GGAAACAACGCGGAAGGCGG+TGG 0.565303 1_2:-55560278 None:intergenic
TGGAGAGTTGTGGATCTGAA+AGG 0.568009 1_2:-55560028 None:intergenic
TGGGTTGAGCAAGTTTCGAA+TGG 0.568760 1_2:+55565203 Msa0078190:CDS
TGTTTCCGCACTTGCTGACG+TGG 0.569675 1_2:+55560294 Msa0078190:CDS
GATCGCCTATGCAAGACACT+TGG 0.570540 1_2:+55562761 Msa0078190:CDS
CCACTGTAAAGATGAGAGAC+TGG 0.570607 1_2:+55565422 Msa0078190:CDS
AAGTGCGGAAACAACGCGGA+AGG 0.578936 1_2:-55560284 None:intergenic
TGGATGTTTCGAAGAAATAC+GGG 0.580345 1_2:+55563219 Msa0078190:CDS
AAAGAGTGACGTTGAACGTG+TGG 0.580901 1_2:+55563601 Msa0078190:CDS
CTTGTTAGGATCAAATGAAG+TGG 0.581722 1_2:+55565149 Msa0078190:CDS
AAGAACTCTTGCAATGAGCT+CGG 0.581985 1_2:+55564831 Msa0078190:CDS
GGTTGTCGTTGGATTAATCT+GGG 0.583070 1_2:-55559975 None:intergenic
ATATCTCCACAGCACATACA+TGG 0.583294 1_2:-55561725 None:intergenic
AATAACAGATAGGCATTGGT+GGG 0.583324 1_2:+55565575 Msa0078190:three_prime_UTR
GCTCATGCTCTGACAAAGAC+CGG 0.584807 1_2:-55563445 None:intergenic
TGTGGGGCTAAGGATGATGA+TGG 0.586935 1_2:+55565261 Msa0078190:CDS
TCTTCTTGTATGTTATGTGG+GGG 0.587667 1_2:-55559874 None:intergenic
GGAGGAAAAGTAGTCTATGG+TGG 0.589886 1_2:+55563749 Msa0078190:CDS
TTGCTCCATGCCATTATGAA+GGG 0.590236 1_2:+55563254 Msa0078190:CDS
AAATAACAGATAGGCATTGG+TGG 0.591327 1_2:+55565574 Msa0078190:three_prime_UTR
AAGCCATGCTCAGAGTGCTG+CGG 0.591353 1_2:+55563627 Msa0078190:CDS
TTTGCCAAAATAAAGAAGCC+CGG 0.591612 1_2:+55559752 None:intergenic
CATCATCACTGGTTGTCACA+TGG 0.592955 1_2:-55562589 None:intergenic
TGTGTCCGAGGAAAATACTC+CGG 0.593241 1_2:+55565174 Msa0078190:CDS
GATTTCCCTTCATAATGGCA+TGG 0.595321 1_2:-55563259 None:intergenic
TGGACAAGGGTAGATTGGAT+AGG 0.597123 1_2:-55563364 None:intergenic
TGGCGCGTGAGGTGAGATCT+CGG 0.597657 1_2:-55560051 None:intergenic
CATGGTGTAGTCCATGCCAA+TGG 0.598587 1_2:+55562659 Msa0078190:CDS
GAATGGAACGTGGACTTGAG+AGG 0.599671 1_2:+55565220 Msa0078190:CDS
AGCAAGTTTCGAATGGAACG+TGG 0.600571 1_2:+55565210 Msa0078190:CDS
GTGTCGGTGAGATCACCGAT+GGG 0.602427 1_2:+55560330 Msa0078190:CDS
TGGTTTGTGGTATCCACCAA+TGG 0.603238 1_2:-55561705 None:intergenic
AGTTGTGGATCTGAAAGGGA+GGG 0.603447 1_2:-55560023 None:intergenic
ATCCTAACAAGAACTTGACC+TGG 0.604261 1_2:-55565137 None:intergenic
TCGAGTTAATGGCAGAGAAG+GGG 0.604967 1_2:+55562697 Msa0078190:CDS
CTGGGAGAGGAAGATGGACA+AGG 0.606165 1_2:-55563378 None:intergenic
TAGCTCCAAGTGTCTTGCAT+AGG 0.606194 1_2:-55562766 None:intergenic
TGGTAACGCTTACTGCACAC+TGG 0.606738 1_2:-55561656 None:intergenic
TAAGGGTGCTGTTTGCAAGG+TGG 0.609196 1_2:+55563688 Msa0078190:CDS
CCATTATGAAGGGAAATCCA+TGG 0.613353 1_2:+55563264 Msa0078190:CDS
CGAGTTAATGGCAGAGAAGG+GGG 0.613514 1_2:+55562698 Msa0078190:CDS
GGTGCCCATAACCATTGGCA+TGG 0.613676 1_2:-55562670 None:intergenic
ATTCCATCCCCATTGAGGGA+TGG 0.613738 1_2:-55561873 None:intergenic
AATCCATGGTATGGTGAGTG+GGG 0.614854 1_2:+55563278 Msa0078190:CDS
TGCGGAAACAACGCGGAAGG+CGG 0.616307 1_2:-55560281 None:intergenic
AAGCGGCGAGGGATGGTGAA+GGG 0.618092 1_2:-55560187 None:intergenic
ATATCCTGCACACGTGAGTG+AGG 0.618383 1_2:-55563410 None:intergenic
ATTTGCCTTGCCATTTATGG+CGG 0.619045 1_2:+55559779 Msa0078190:five_prime_UTR
GTTTACCGCCATAAATGGCA+AGG 0.621211 1_2:-55559784 None:intergenic
GAGGAAAAGTAGTCTATGGT+GGG 0.621787 1_2:+55563750 Msa0078190:CDS
TGATGATGGAGAGAGAATGA+TGG 0.623364 1_2:+55565275 Msa0078190:CDS
GCATGAGCTTGTAAATATGA+GGG 0.624440 1_2:+55563460 Msa0078190:CDS
ACAACTAGTGGTAGTTACAT+GGG 0.628297 1_2:+55565456 Msa0078190:CDS
TCTATCATGGTCGTTAGCGG+AGG 0.629761 1_2:+55560104 Msa0078190:exon
GCTAACGACCATGATAGAAG+AGG 0.631432 1_2:-55560099 None:intergenic
TCTGTACATACAAACAAATG+GGG 0.631676 1_2:+55565646 Msa0078190:three_prime_UTR
TGGCAGAAAAGTTAGTGTGA+TGG 0.634616 1_2:+55563199 Msa0078190:intron
ACATAGTTTAGCATCATCCA+AGG 0.634897 1_2:-55564796 None:intergenic
GCTGATGGGAGATCCATTGG+TGG 0.636198 1_2:+55561692 Msa0078190:CDS
TGGCAGATCCTCTTCCGTGT+CGG 0.637514 1_2:+55560314 Msa0078190:CDS
AGAAACTCTCTGAAGCGGCG+AGG 0.637539 1_2:-55560199 None:intergenic
GTGATATGTGTGGTGTGTGG+CGG 0.639114 1_2:+55565301 Msa0078190:CDS
CATCTTCTTCCACAACGTCA+AGG 0.640303 1_2:-55560379 None:intergenic
ATTAGAACGAAAAGGTCCGC+CGG 0.640366 1_2:-55560222 None:intergenic
GAGTGACGTTGAACGTGTGG+AGG 0.640450 1_2:+55563604 Msa0078190:CDS
ATGGCAAGGCAAATTAGACC+GGG 0.642515 1_2:-55559770 None:intergenic
ATAATCAAGAAGCTCTGGAG+AGG 0.642892 1_2:-55563711 None:intergenic
GACTCAAAGCTTAAATCGGG+TGG 0.643015 1_2:+55565399 Msa0078190:CDS
TTGTTAGGCTTCCCTCAATG+GGG 0.644663 1_2:+55561835 Msa0078190:intron
CATGTAACTACCACTAGTTG+TGG 0.646057 1_2:-55565454 None:intergenic
TGGAACGTGGACTTGAGAGG+TGG 0.649309 1_2:+55565223 Msa0078190:CDS
GTCGGTGAGATCACCGATGG+GGG 0.651106 1_2:+55560332 Msa0078190:CDS
TATCCCCACTCACCATACCA+TGG 0.651467 1_2:-55563281 None:intergenic
AATTTAGACAAATCTGACAC+TGG 0.653271 1_2:-55564910 None:intergenic
TGTTAGGCTTCCCTCAATGG+GGG 0.653353 1_2:+55561836 Msa0078190:intron
CACAAACCATGTATGTGCTG+TGG 0.653907 1_2:+55561719 Msa0078190:CDS
AAGGGAATGAAAAGAAATCG+TGG 0.654007 1_2:-55560169 None:intergenic
TATTGCCTTTCTGAACTGGG+AGG 0.655842 1_2:+55563731 Msa0078190:CDS
TCTGGGTCTAATTGGGTGAG+TGG 0.656988 1_2:+55563656 Msa0078190:CDS
GACTGTCGAGTGCAACTGTG+GGG 0.662182 1_2:+55565245 Msa0078190:CDS
CTGTACATACAAACAAATGG+GGG 0.662633 1_2:+55565647 Msa0078190:three_prime_UTR
ACGTCAAGGCAAATAACCGC+CGG 0.662764 1_2:-55560365 None:intergenic
GCCGGAGAAACTCTCTGAAG+CGG 0.664956 1_2:-55560204 None:intergenic
TAACAAGAACTTGACCTGGG+TGG 0.673206 1_2:-55565133 None:intergenic
TGTCGGTGAGATCACCGATG+GGG 0.674929 1_2:+55560331 Msa0078190:CDS
TAGAAGAGGTTACAGGCGCG+TGG 0.676595 1_2:-55560085 None:intergenic
TCCTAACAAGAACTTGACCT+GGG 0.680686 1_2:-55565136 None:intergenic
TGGCAGCTATTGTCTCACAC+AGG 0.681148 1_2:+55563316 Msa0078190:CDS
CCAGTCTCTCATCTTTACAG+TGG 0.682996 1_2:-55565422 None:intergenic
CTTGTGATATGTGTGGTGTG+TGG 0.684382 1_2:+55565298 Msa0078190:CDS
CATCGGTGATCTCACCGACA+CGG 0.685141 1_2:-55560328 None:intergenic
GCTAGTGTTACCACAACTAG+TGG 0.686933 1_2:+55565444 Msa0078190:CDS
AAAGAAATCGTGGTAATCGG+CGG 0.688894 1_2:-55560159 None:intergenic
AATCTTTAGGTCAGACACTG+TGG 0.691571 1_2:-55565022 None:intergenic
TTAGACAAATCTGACACTGG+CGG 0.691794 1_2:-55564907 None:intergenic
GACGAACTAGTTGGCTACAG+CGG 0.692981 1_2:+55565099 Msa0078190:CDS
TAGAACCTGAAATATGAACA+AGG 0.696033 1_2:-55565608 None:intergenic
TGGGAGAGGAAGATGGACAA+GGG 0.696590 1_2:-55563377 None:intergenic
TACCCAACCATCCCTCAATG+GGG 0.711748 1_2:+55561866 Msa0078190:CDS
CAGCAAGTGCGGAAACAACG+CGG 0.723754 1_2:-55560288 None:intergenic
GCTTCAGAGAGTTTCTCCGG+CGG 0.727571 1_2:+55560206 Msa0078190:CDS
CGGTGTAGAAGATTCCACCC+AGG 0.728487 1_2:+55565119 Msa0078190:CDS
ATGATGGCTTGTGATATGTG+TGG 0.730981 1_2:+55565291 Msa0078190:CDS
CGCGTGAGGTGAGATCTCGG+TGG 0.742621 1_2:-55560048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGCATATTATTATAA+TGG - chr1_2:55560647-55560666 None:intergenic 10.0%
!!! AATAGTCAATATTATTTTTT+GGG - chr1_2:55561193-55561212 None:intergenic 10.0%
!!! CAGATATATATTTTATTTTT+TGG + chr1_2:55561425-55561444 Msa0078190:intron 10.0%
!! AAAAAACAATACAAATTAAT+AGG - chr1_2:55561614-55561633 None:intergenic 10.0%
!! TAATTGATATAGTTAAAATA+GGG + chr1_2:55562814-55562833 Msa0078190:intron 10.0%
!! TAATTTAAATATAAGCAAAT+GGG - chr1_2:55564140-55564159 None:intergenic 10.0%
!! GAAAAAATAACAAATTAATT+AGG + chr1_2:55564186-55564205 Msa0078190:intron 10.0%
!! AAAAATAACAAATTAATTAG+GGG + chr1_2:55564188-55564207 Msa0078190:intron 10.0%
!! ATATAGATTATAATTTATAC+AGG - chr1_2:55564391-55564410 None:intergenic 10.0%
!! TGTATAAATTATAATCTATA+TGG + chr1_2:55564390-55564409 Msa0078190:intron 10.0%
!! ATGGATAAATATATTTAAAA+AGG + chr1_2:55564409-55564428 Msa0078190:intron 10.0%
!! ATGCAAATTAAAATTGAAAT+TGG + chr1_2:55560568-55560587 Msa0078190:intron 15.0%
!!! TTTCATTTGGATATTTTTTT+TGG + chr1_2:55561061-55561080 Msa0078190:intron 15.0%
!!! CAATAGTCAATATTATTTTT+TGG - chr1_2:55561194-55561213 None:intergenic 15.0%
!! GTAATTGATATAGTTAAAAT+AGG + chr1_2:55562813-55562832 Msa0078190:intron 15.0%
!! CTAATTTAAATATAAGCAAA+TGG - chr1_2:55564141-55564160 None:intergenic 15.0%
!! TTAAATTTAATAGAGAAACA+AGG - chr1_2:55564347-55564366 None:intergenic 15.0%
!!! TAAATTTAAAATTGTTACAC+TGG + chr1_2:55564358-55564377 Msa0078190:intron 15.0%
!! GAAAGTGATAAAAAGAAAAA+GGG - chr1_2:55559906-55559925 None:intergenic 20.0%
!! AGAAAGTGATAAAAAGAAAA+AGG - chr1_2:55559907-55559926 None:intergenic 20.0%
!! ATTAATTAAAGCAAAAGAGT+CGG - chr1_2:55560520-55560539 None:intergenic 20.0%
!!! ACTCTTTTGCTTTAATTAAT+AGG + chr1_2:55560520-55560539 Msa0078190:intron 20.0%
!! AAGAGAATATAAATGGTATT+TGG + chr1_2:55560842-55560861 Msa0078190:intron 20.0%
!! AGAGAATATAAATGGTATTT+GGG + chr1_2:55560843-55560862 Msa0078190:intron 20.0%
!!! ACACTTTTTAAATGAATAAG+TGG + chr1_2:55561474-55561493 Msa0078190:intron 20.0%
!!! CACTTTTTAAATGAATAAGT+GGG + chr1_2:55561475-55561494 Msa0078190:intron 20.0%
!!! ACTTTTTAAATGAATAAGTG+GGG + chr1_2:55561476-55561495 Msa0078190:intron 20.0%
!! AACAAAAAAAATAGCTCAAT+TGG - chr1_2:55561544-55561563 None:intergenic 20.0%
!!! TTGTTTAACTTTTGTTTTCT+TGG + chr1_2:55561559-55561578 Msa0078190:intron 20.0%
!!! TTGTATTGTTTTTTGAACTT+AGG + chr1_2:55561620-55561639 Msa0078190:intron 20.0%
!!! ATTTTATAATCAAAGCTGAT+GGG + chr1_2:55561678-55561697 Msa0078190:CDS 20.0%
!! TTATGAAATATAAGAATGAG+AGG + chr1_2:55561977-55561996 Msa0078190:intron 20.0%
!! CAAATTTCAATCTACAATTA+AGG - chr1_2:55562130-55562149 None:intergenic 20.0%
!! CTTAATTGTAGATTGAAATT+TGG + chr1_2:55562128-55562147 Msa0078190:intron 20.0%
!!! ATGACTAATTTTCTAGAATT+TGG - chr1_2:55562157-55562176 None:intergenic 20.0%
!!! ATTTCATACTGAAAGTATTT+AGG - chr1_2:55562912-55562931 None:intergenic 20.0%
!! GATCATTCAAATTAAATATG+AGG + chr1_2:55563020-55563039 Msa0078190:intron 20.0%
!! GAAACAAGAGAATATTATTT+AGG + chr1_2:55563113-55563132 Msa0078190:intron 20.0%
!! TTAGGTTATTTGTGTTTATA+TGG + chr1_2:55563131-55563150 Msa0078190:intron 20.0%
!! TATTTGTGTTTATATGGATA+TGG + chr1_2:55563137-55563156 Msa0078190:intron 20.0%
!!! TTTAAGTTTAACTGCTTAAA+AGG + chr1_2:55563864-55563883 Msa0078190:intron 20.0%
!!! AACTGATTTGAAATCATATA+AGG - chr1_2:55564638-55564657 None:intergenic 20.0%
! ATTCTTCTTGTATGTTATGT+GGG - chr1_2:55559879-55559898 None:intergenic 25.0%
! TATTCTTCTTGTATGTTATG+TGG - chr1_2:55559880-55559899 None:intergenic 25.0%
!! TCTTCTTTTCATACGTTTTA+AGG - chr1_2:55560135-55560154 None:intergenic 25.0%
! GATATATTGTGACGATAAAA+TGG + chr1_2:55560804-55560823 Msa0078190:intron 25.0%
! GATAAAATGGAGAGATATTA+GGG + chr1_2:55560817-55560836 Msa0078190:intron 25.0%
! AATATAAATGGTATTTGGGT+GGG + chr1_2:55560847-55560866 Msa0078190:intron 25.0%
!!! GCAACTTTTCTTTTTTCATT+TGG + chr1_2:55561048-55561067 Msa0078190:intron 25.0%
!!! TTTTTGGAATATTCTCCATT+TGG + chr1_2:55561077-55561096 Msa0078190:intron 25.0%
! AAAAAAAATAGCTCAATTGG+TGG - chr1_2:55561541-55561560 None:intergenic 25.0%
! ACTCTATCAAGAAAAACAAT+AGG - chr1_2:55561591-55561610 None:intergenic 25.0%
!! CATCAGCTTTGATTATAAAA+TGG - chr1_2:55561679-55561698 None:intergenic 25.0%
!! CATTTTATAATCAAAGCTGA+TGG + chr1_2:55561677-55561696 Msa0078190:CDS 25.0%
! CAATTGATAAGAATATCCAA+AGG - chr1_2:55561806-55561825 None:intergenic 25.0%
!!! CAATTGATTGTTACTTTGTT+AGG + chr1_2:55561820-55561839 Msa0078190:intron 25.0%
!! TCATGTTTATATCTGAAATG+AGG + chr1_2:55561926-55561945 Msa0078190:intron 25.0%
!! CATGTTTATATCTGAAATGA+GGG + chr1_2:55561927-55561946 Msa0078190:intron 25.0%
! AGTAATAAATGACTTAGGTT+GGG - chr1_2:55562088-55562107 None:intergenic 25.0%
! TAGTAATAAATGACTTAGGT+TGG - chr1_2:55562089-55562108 None:intergenic 25.0%
! TCAGTAGTAATAAATGACTT+AGG - chr1_2:55562093-55562112 None:intergenic 25.0%
! CTGTAAATTGAATAAACCAA+GGG - chr1_2:55562293-55562312 None:intergenic 25.0%
! CTGTAAATTGAATAAACCAA+GGG - chr1_2:55562293-55562312 None:intergenic 25.0%
! CATGCATTAAGAAAAACAAA+AGG - chr1_2:55562442-55562461 None:intergenic 25.0%
!!! ATTTTAGAAATAGCATGTGT+TGG + chr1_2:55562505-55562524 Msa0078190:intron 25.0%
! ATATTCAGTACATTACACTT+AGG + chr1_2:55563053-55563072 Msa0078190:intron 25.0%
!! AGGATATGATTTTGTATTAC+CGG + chr1_2:55563426-55563445 Msa0078190:CDS 25.0%
!!! GACCTATTTTGTTTTTTGAT+GGG + chr1_2:55563482-55563501 Msa0078190:CDS 25.0%
! AACCCATCAAAAAACAAAAT+AGG - chr1_2:55563487-55563506 None:intergenic 25.0%
! TTAGATTTCAATGTGATTCT+TGG + chr1_2:55563821-55563840 Msa0078190:intron 25.0%
! TACACATCACATTTATAACA+TGG - chr1_2:55563918-55563937 None:intergenic 25.0%
!!! AAGTTTTAGATGTTTGTTTC+TGG + chr1_2:55564075-55564094 Msa0078190:intron 25.0%
!!! AAAGCATTGATATTATCTCT+TGG + chr1_2:55564556-55564575 Msa0078190:intron 25.0%
!!! CAAAGAATTAAAAAAGCATC+AGG - chr1_2:55564603-55564622 None:intergenic 25.0%
!!! CTGATGCTTTTTTAATTCTT+TGG + chr1_2:55564601-55564620 Msa0078190:intron 25.0%
! TATTGTGTTCTATTTGTTTC+AGG + chr1_2:55564662-55564681 Msa0078190:intron 25.0%
!!! TGATGCTACAAATGTTTTTA+TGG + chr1_2:55564687-55564706 Msa0078190:CDS 25.0%
!!! AATTATTTCTGGTGGAATTT+TGG - chr1_2:55564986-55565005 None:intergenic 25.0%
! ATACCTTAACGAATATTAGA+AGG - chr1_2:55565498-55565517 None:intergenic 25.0%
! TTCTGTACATACAAACAAAT+GGG + chr1_2:55565645-55565664 Msa0078190:three_prime_UTR 25.0%
TTCTTCTTGTATGTTATGTG+GGG - chr1_2:55559878-55559897 None:intergenic 30.0%
! AATCTGGGAAGAACATTTTA+TGG - chr1_2:55559963-55559982 None:intergenic 30.0%
AAGATGGTTATTGAGTTTGA+TGG - chr1_2:55559999-55560018 None:intergenic 30.0%
TGAAAAGAAATCGTGGTAAT+CGG - chr1_2:55560165-55560184 None:intergenic 30.0%
CGATAAAATGGAGAGATATT+AGG + chr1_2:55560816-55560835 Msa0078190:intron 30.0%
TAGGGAGAAGAGAATATAAA+TGG + chr1_2:55560835-55560854 Msa0078190:intron 30.0%
GAATATAAATGGTATTTGGG+TGG + chr1_2:55560846-55560865 Msa0078190:intron 30.0%
!!! GTGGTTTTGATTTTTGGATA+CGG + chr1_2:55560923-55560942 Msa0078190:intron 30.0%
TTGTGCTAAAAAGTTATGCT+TGG + chr1_2:55561009-55561028 Msa0078190:intron 30.0%
ACAACTAAGCAAAATCCAAA+TGG - chr1_2:55561095-55561114 None:intergenic 30.0%
!!! ATTGTTCTTTTTTGCAACAC+TGG + chr1_2:55561265-55561284 Msa0078190:intron 30.0%
!!! TTTTTGGTTTAGTAGTGTAG+TGG + chr1_2:55561441-55561460 Msa0078190:intron 30.0%
AATGGAGAAAAATACTCACT+TGG - chr1_2:55561768-55561787 None:intergenic 30.0%
AGGATGACAATTGCATAAAA+TGG - chr1_2:55561786-55561805 None:intergenic 30.0%
TTTATGCAATTGTCATCCTT+TGG + chr1_2:55561787-55561806 Msa0078190:intron 30.0%
TGCTGAAATAGAATGTTTGT+TGG + chr1_2:55562239-55562258 Msa0078190:intron 30.0%
! AAATAGAATGTTTGTTGGTC+TGG + chr1_2:55562244-55562263 Msa0078190:intron 30.0%
! AATAGAATGTTTGTTGGTCT+GGG + chr1_2:55562245-55562264 Msa0078190:intron 30.0%
GCTGTAAATTGAATAAACCA+AGG - chr1_2:55562294-55562313 None:intergenic 30.0%
GCTGTAAATTGAATAAACCA+AGG - chr1_2:55562294-55562313 None:intergenic 30.0%
! TGTTTTTCTTAATGCATGTC+TGG + chr1_2:55562444-55562463 Msa0078190:intron 30.0%
! AACACAAGTCATCTTTTACA+TGG + chr1_2:55562641-55562660 Msa0078190:CDS 30.0%
TTGCCATATTATGGATTTCT+GGG + chr1_2:55562739-55562758 Msa0078190:CDS 30.0%
!! CACTACTTAACAGAAGTATT+AGG - chr1_2:55562876-55562895 None:intergenic 30.0%
CTAATACTTCTGTTAAGTAG+TGG + chr1_2:55562874-55562893 Msa0078190:intron 30.0%
AGTACATTACACTTAGGATT+TGG + chr1_2:55563059-55563078 Msa0078190:intron 30.0%
! TTTTCTGCCAATGTACAAAT+GGG - chr1_2:55563189-55563208 None:intergenic 30.0%
ATGGATGTTTCGAAGAAATA+CGG + chr1_2:55563218-55563237 Msa0078190:CDS 30.0%
!!! GGACCTATTTTGTTTTTTGA+TGG + chr1_2:55563481-55563500 Msa0078190:CDS 30.0%
TTCTGGATTATCAAGTTCTT+GGG + chr1_2:55563577-55563596 Msa0078190:CDS 30.0%
AAGTTTAACTGCTTAAAAGG+AGG + chr1_2:55563867-55563886 Msa0078190:intron 30.0%
!!! TTACACTTTTCAAGTCATGA+TGG + chr1_2:55563998-55564017 Msa0078190:intron 30.0%
!! TTCCTATCTAGTTCTTGTAA+TGG - chr1_2:55564117-55564136 None:intergenic 30.0%
TCAGTATTAGTAATGACATC+AGG - chr1_2:55564504-55564523 None:intergenic 30.0%
TGATGTCATTACTAATACTG+AGG + chr1_2:55564503-55564522 Msa0078190:intron 30.0%
!! TATTATCTCTTGGTGTTCTT+TGG + chr1_2:55564566-55564585 Msa0078190:intron 30.0%
! ATAAATATCTCAAGCATTGC+AGG - chr1_2:55564759-55564778 None:intergenic 30.0%
AATTTAGACAAATCTGACAC+TGG - chr1_2:55564913-55564932 None:intergenic 30.0%
TAAATTACGTATCTCATGTC+AGG + chr1_2:55564927-55564946 Msa0078190:CDS 30.0%
! TGTTATTTACAGGCTATTTC+AGG - chr1_2:55565562-55565581 None:intergenic 30.0%
ATAGCCTGTAAATAACAGAT+AGG + chr1_2:55565565-55565584 Msa0078190:three_prime_UTR 30.0%
! AATGCCTATCTGTTATTTAC+AGG - chr1_2:55565572-55565591 None:intergenic 30.0%
TGTAAATAACAGATAGGCAT+TGG + chr1_2:55565571-55565590 Msa0078190:three_prime_UTR 30.0%
TAGAACCTGAAATATGAACA+AGG - chr1_2:55565611-55565630 None:intergenic 30.0%
CTTCTGTACATACAAACAAA+TGG + chr1_2:55565644-55565663 Msa0078190:three_prime_UTR 30.0%
TCTGTACATACAAACAAATG+GGG + chr1_2:55565646-55565665 Msa0078190:three_prime_UTR 30.0%
! CTAATTTGCCTTGCCATTTA+TGG + chr1_2:55559776-55559795 Msa0078190:five_prime_UTR 35.0%
TCTTCTTGTATGTTATGTGG+GGG - chr1_2:55559877-55559896 None:intergenic 35.0%
AAGGGAATGAAAAGAAATCG+TGG - chr1_2:55560172-55560191 None:intergenic 35.0%
GAGTGAACATTAGAACGAAA+AGG - chr1_2:55560233-55560252 None:intergenic 35.0%
!!! TGACACGTGGTTTTGATTTT+TGG + chr1_2:55560917-55560936 Msa0078190:intron 35.0%
!! AATGAATAAGTGGGGTATTG+CGG + chr1_2:55561484-55561503 Msa0078190:intron 35.0%
GATGGAATCTTGTAGGAATA+GGG + chr1_2:55561888-55561907 Msa0078190:intron 35.0%
! TTATATCTGAAATGAGGGCT+AGG + chr1_2:55561932-55561951 Msa0078190:intron 35.0%
! TATATCTGAAATGAGGGCTA+GGG + chr1_2:55561933-55561952 Msa0078190:intron 35.0%
! AACTACAATGCATTGGCATA+GGG - chr1_2:55562188-55562207 None:intergenic 35.0%
! TAACTACAATGCATTGGCAT+AGG - chr1_2:55562189-55562208 None:intergenic 35.0%
ACTCAGTAACTACAATGCAT+TGG - chr1_2:55562195-55562214 None:intergenic 35.0%
! ATAGAATGTTTGTTGGTCTG+GGG + chr1_2:55562246-55562265 Msa0078190:intron 35.0%
AATTGAATAAACCAAGGGAG+AGG - chr1_2:55562288-55562307 None:intergenic 35.0%
ATTTACAGCTAGTGAAGAAG+CGG + chr1_2:55562305-55562324 Msa0078190:intron 35.0%
AATTGAATAAACCAAGGGAG+AGG - chr1_2:55562288-55562307 None:intergenic 35.0%
ATTTACAGCTAGTGAAGAAG+CGG + chr1_2:55562305-55562324 Msa0078190:intron 35.0%
TAGTACCTGATCGTACATTA+TGG + chr1_2:55562531-55562550 Msa0078190:intron 35.0%
ATCAACCATAATGTACGATC+AGG - chr1_2:55562539-55562558 None:intergenic 35.0%
! GGTTGATCTGTTTTATCTTC+AGG + chr1_2:55562552-55562571 Msa0078190:intron 35.0%
!! TCTTTCTGGTTGCCATATTA+TGG + chr1_2:55562730-55562749 Msa0078190:CDS 35.0%
GTTGCCATATTATGGATTTC+TGG + chr1_2:55562738-55562757 Msa0078190:CDS 35.0%
GATCCCAGAAATCCATAATA+TGG - chr1_2:55562745-55562764 None:intergenic 35.0%
GTTTGTTCCCATTTGTACAT+TGG + chr1_2:55563179-55563198 Msa0078190:intron 35.0%
! CTTTTCTGCCAATGTACAAA+TGG - chr1_2:55563190-55563209 None:intergenic 35.0%
TGGATGTTTCGAAGAAATAC+GGG + chr1_2:55563219-55563238 Msa0078190:CDS 35.0%
AGCATGAGCTTGTAAATATG+AGG + chr1_2:55563459-55563478 Msa0078190:CDS 35.0%
GCATGAGCTTGTAAATATGA+GGG + chr1_2:55563460-55563479 Msa0078190:CDS 35.0%
ATGACATAACCTGCAAAAAG+CGG + chr1_2:55563543-55563562 Msa0078190:CDS 35.0%
CTTCTGGATTATCAAGTTCT+TGG + chr1_2:55563576-55563595 Msa0078190:CDS 35.0%
TGATTATTGCCTTTCTGAAC+TGG + chr1_2:55563727-55563746 Msa0078190:CDS 35.0%
GATTATTGCCTTTCTGAACT+GGG + chr1_2:55563728-55563747 Msa0078190:CDS 35.0%
AATTCATACACTCCAGTTTG+AGG - chr1_2:55563797-55563816 None:intergenic 35.0%
AAACTGGAGTGTATGAATTC+AGG + chr1_2:55563798-55563817 Msa0078190:CDS 35.0%
!! TTTAGATGTTTGTTTCTGGC+AGG + chr1_2:55564079-55564098 Msa0078190:intron 35.0%
GACCATTACAAGAACTAGAT+AGG + chr1_2:55564112-55564131 Msa0078190:intron 35.0%
CATTATGTGACATTGTCGTA+GGG + chr1_2:55564290-55564309 Msa0078190:intron 35.0%
AGGTTGGAAAAGGATATGAT+AGG - chr1_2:55564452-55564471 None:intergenic 35.0%
GAAGAACATCCACTATTTCA+GGG - chr1_2:55564534-55564553 None:intergenic 35.0%
AGAAGAACATCCACTATTTC+AGG - chr1_2:55564535-55564554 None:intergenic 35.0%
ACATAGTTTAGCATCATCCA+AGG - chr1_2:55564799-55564818 None:intergenic 35.0%
!! CTTTTGCTGCTTCAATCTTT+AGG - chr1_2:55565038-55565057 None:intergenic 35.0%
!! TTTCAAGTTGACGAACTAGT+TGG + chr1_2:55565090-55565109 Msa0078190:CDS 35.0%
CTTGTTAGGATCAAATGAAG+TGG + chr1_2:55565149-55565168 Msa0078190:CDS 35.0%
!!! TAAGCTTTGAGTCACAGTTT+TGG - chr1_2:55565392-55565411 None:intergenic 35.0%
CTGTGACTCAAAGCTTAAAT+CGG + chr1_2:55565395-55565414 Msa0078190:CDS 35.0%
TGTGACTCAAAGCTTAAATC+GGG + chr1_2:55565396-55565415 Msa0078190:CDS 35.0%
ACAACTAGTGGTAGTTACAT+GGG + chr1_2:55565456-55565475 Msa0078190:CDS 35.0%
GTGCCTTCTAATATTCGTTA+AGG + chr1_2:55565492-55565511 Msa0078190:CDS 35.0%
!! AAATAACAGATAGGCATTGG+TGG + chr1_2:55565574-55565593 Msa0078190:three_prime_UTR 35.0%
!! AATAACAGATAGGCATTGGT+GGG + chr1_2:55565575-55565594 Msa0078190:three_prime_UTR 35.0%
CTGTACATACAAACAAATGG+GGG + chr1_2:55565647-55565666 Msa0078190:three_prime_UTR 35.0%
!! TAGACCGGGCTTCTTTATTT+TGG - chr1_2:55559759-55559778 None:intergenic 40.0%
AATGGCAAGGCAAATTAGAC+CGG - chr1_2:55559774-55559793 None:intergenic 40.0%
! ATTTGCCTTGCCATTTATGG+CGG + chr1_2:55559779-55559798 Msa0078190:five_prime_UTR 40.0%
! GGAGAGTGGAGAGATTTTTA+AGG - chr1_2:55559837-55559856 None:intergenic 40.0%
GGTTGTCGTTGGATTAATCT+GGG - chr1_2:55559978-55559997 None:intergenic 40.0%
TGGTTGTCGTTGGATTAATC+TGG - chr1_2:55559979-55559998 None:intergenic 40.0%
! TTGAGTTTGATGGTTGTCGT+TGG - chr1_2:55559989-55560008 None:intergenic 40.0%
ACCATGATAGAAGAGGTTAC+AGG - chr1_2:55560095-55560114 None:intergenic 40.0%
TCTTCTATCATGGTCGTTAG+CGG + chr1_2:55560101-55560120 Msa0078190:exon 40.0%
AAAGAAATCGTGGTAATCGG+CGG - chr1_2:55560162-55560181 None:intergenic 40.0%
CTGATCACAATACACAGATC+TGG - chr1_2:55560414-55560433 None:intergenic 40.0%
GAGTCAACTCACCAAAAACT+CGG - chr1_2:55560439-55560458 None:intergenic 40.0%
!!! GAGTTTTTGGTGAGTTGACT+CGG + chr1_2:55560438-55560457 Msa0078190:intron 40.0%
! GTGAATCGCTTTGGTTTCAT+CGG + chr1_2:55560472-55560491 Msa0078190:intron 40.0%
!!! GGTTTCATCGGTTTTTCTTC+CGG + chr1_2:55560484-55560503 Msa0078190:intron 40.0%
AAGAGTCGGTGATAGAAAAC+CGG - chr1_2:55560506-55560525 None:intergenic 40.0%
ATAAATGGTATTTGGGTGGG+TGG + chr1_2:55560850-55560869 Msa0078190:intron 40.0%
TAAATGGTATTTGGGTGGGT+GGG + chr1_2:55560851-55560870 Msa0078190:intron 40.0%
TCCACATGTCTCCTTCTTAA+GGG - chr1_2:55560885-55560904 None:intergenic 40.0%
TTCCACATGTCTCCTTCTTA+AGG - chr1_2:55560886-55560905 None:intergenic 40.0%
!! ATGAATAAGTGGGGTATTGC+GGG + chr1_2:55561485-55561504 Msa0078190:intron 40.0%
! TTTTTGAACTTAGGCTGCAG+CGG + chr1_2:55561629-55561648 Msa0078190:intron 40.0%
ATATCTCCACAGCACATACA+TGG - chr1_2:55561728-55561747 None:intergenic 40.0%
TTTGTTAGGCTTCCCTCAAT+GGG + chr1_2:55561834-55561853 Msa0078190:intron 40.0%
GTATAATCTTCCCCCATTGA+GGG - chr1_2:55561849-55561868 None:intergenic 40.0%
GGATGGAATCTTGTAGGAAT+AGG + chr1_2:55561887-55561906 Msa0078190:intron 40.0%
AGAGCCTCAATACAAGTGTA+AGG + chr1_2:55562028-55562047 Msa0078190:intron 40.0%
GAGCCTCAATACAAGTGTAA+GGG + chr1_2:55562029-55562048 Msa0078190:intron 40.0%
CAACCCTTACACTTGTATTG+AGG - chr1_2:55562035-55562054 None:intergenic 40.0%
! CAGTGATGATGTTGAAGACT+GGG + chr1_2:55562601-55562620 Msa0078190:CDS 40.0%
! GATGACTTGTGTTCTCTAGT+TGG - chr1_2:55562634-55562653 None:intergenic 40.0%
TAGTCCATGCCAATGGTTAT+GGG + chr1_2:55562666-55562685 Msa0078190:CDS 40.0%
! TTCGAGTTAATGGCAGAGAA+GGG + chr1_2:55562696-55562715 Msa0078190:CDS 40.0%
TCACATTTATGAGACCTGTC+CGG + chr1_2:55562935-55562954 Msa0078190:intron 40.0%
TGGCAGAAAAGTTAGTGTGA+TGG + chr1_2:55563199-55563218 Msa0078190:intron 40.0%
TTGCTCCATGCCATTATGAA+GGG + chr1_2:55563254-55563273 Msa0078190:CDS 40.0%
GATTTCCCTTCATAATGGCA+TGG - chr1_2:55563262-55563281 None:intergenic 40.0%
CCATGGATTTCCCTTCATAA+TGG - chr1_2:55563267-55563286 None:intergenic 40.0%
CCATTATGAAGGGAAATCCA+TGG + chr1_2:55563264-55563283 Msa0078190:CDS 40.0%
ATGAAGGGAAATCCATGGTA+TGG + chr1_2:55563269-55563288 Msa0078190:CDS 40.0%
AAATCCATGGTATGGTGAGT+GGG + chr1_2:55563277-55563296 Msa0078190:CDS 40.0%
! GGTGAGTGGGGATATAATTT+TGG + chr1_2:55563290-55563309 Msa0078190:CDS 40.0%
!!! TGGGGATATAATTTTGGCTC+TGG + chr1_2:55563296-55563315 Msa0078190:CDS 40.0%
GGTTATGTCATCAGACTTAG+AGG - chr1_2:55563534-55563553 None:intergenic 40.0%
!! ATAATCAAGAAGCTCTGGAG+AGG - chr1_2:55563714-55563733 None:intergenic 40.0%
AGGCAATAATCAAGAAGCTC+TGG - chr1_2:55563719-55563738 None:intergenic 40.0%
GAGGAAAAGTAGTCTATGGT+GGG + chr1_2:55563750-55563769 Msa0078190:CDS 40.0%
GATGGATCGAAACTTGATTC+TGG + chr1_2:55564016-55564035 Msa0078190:intron 40.0%
!! ATTCTGGAATCACTTTCACG+AGG + chr1_2:55564032-55564051 Msa0078190:intron 40.0%
!! TTCTGGAATCACTTTCACGA+GGG + chr1_2:55564033-55564052 Msa0078190:intron 40.0%
TTAATTAGGGGTCTGTTTGC+TGG + chr1_2:55564200-55564219 Msa0078190:intron 40.0%
CCTACGACAATGTCACATAA+TGG - chr1_2:55564292-55564311 None:intergenic 40.0%
CCATTATGTGACATTGTCGT+AGG + chr1_2:55564289-55564308 Msa0078190:intron 40.0%
TAGCGTAAGAAGGTTGGAAA+AGG - chr1_2:55564462-55564481 None:intergenic 40.0%
TACATCTAGCGTAAGAAGGT+TGG - chr1_2:55564468-55564487 None:intergenic 40.0%
TGCATACATCTAGCGTAAGA+AGG - chr1_2:55564472-55564491 None:intergenic 40.0%
ATGGCCAACAATAATTCTCC+AGG + chr1_2:55564706-55564725 Msa0078190:CDS 40.0%
TGAGCCTGGAGAATTATTGT+TGG - chr1_2:55564713-55564732 None:intergenic 40.0%
AAGAACTCTTGCAATGAGCT+CGG + chr1_2:55564831-55564850 Msa0078190:CDS 40.0%
TTAGACAAATCTGACACTGG+CGG - chr1_2:55564910-55564929 None:intergenic 40.0%
TGGCTTCAGTATCTTCAGAT+TGG - chr1_2:55564966-55564985 None:intergenic 40.0%
ATGGGCAGCACAATTATTTC+TGG - chr1_2:55564997-55565016 None:intergenic 40.0%
AATCTTTAGGTCAGACACTG+TGG - chr1_2:55565025-55565044 None:intergenic 40.0%
! TGAAGCAGCAAAAGCTTTTC+AGG + chr1_2:55565044-55565063 Msa0078190:CDS 40.0%
TCCTAACAAGAACTTGACCT+GGG - chr1_2:55565139-55565158 None:intergenic 40.0%
ATCCTAACAAGAACTTGACC+TGG - chr1_2:55565140-55565159 None:intergenic 40.0%
GAAAATACTCCGGGAAGAAT+GGG + chr1_2:55565184-55565203 Msa0078190:CDS 40.0%
!! TGATGATGGAGAGAGAATGA+TGG + chr1_2:55565275-55565294 Msa0078190:CDS 40.0%
! ATGATGGCTTGTGATATGTG+TGG + chr1_2:55565291-55565310 Msa0078190:CDS 40.0%
GCATCTCGAACAAACAAAAC+GGG - chr1_2:55565370-55565389 None:intergenic 40.0%
GGCATCTCGAACAAACAAAA+CGG - chr1_2:55565371-55565390 None:intergenic 40.0%
CATGTAACTACCACTAGTTG+TGG - chr1_2:55565457-55565476 None:intergenic 40.0%
CACAACTAGTGGTAGTTACA+TGG + chr1_2:55565455-55565474 Msa0078190:CDS 40.0%
! GCATGCCTTGTTCATATTTC+AGG + chr1_2:55565603-55565622 Msa0078190:three_prime_UTR 40.0%
ATGGCAAGGCAAATTAGACC+GGG - chr1_2:55559773-55559792 None:intergenic 45.0%
GTTTACCGCCATAAATGGCA+AGG - chr1_2:55559787-55559806 None:intergenic 45.0%
AGCGAGTTTACCGCCATAAA+TGG - chr1_2:55559792-55559811 None:intergenic 45.0%
ATGGCGGTAAACTCGCTTAA+CGG + chr1_2:55559795-55559814 Msa0078190:five_prime_UTR 45.0%
AGTTGTGGATCTGAAAGGGA+GGG - chr1_2:55560026-55560045 None:intergenic 45.0%
GGAGAGTTGTGGATCTGAAA+GGG - chr1_2:55560030-55560049 None:intergenic 45.0%
TGGAGAGTTGTGGATCTGAA+AGG - chr1_2:55560031-55560050 None:intergenic 45.0%
GCCTGTAACCTCTTCTATCA+TGG + chr1_2:55560091-55560110 Msa0078190:exon 45.0%
GCTAACGACCATGATAGAAG+AGG - chr1_2:55560102-55560121 None:intergenic 45.0%
ATTAGAACGAAAAGGTCCGC+CGG - chr1_2:55560225-55560244 None:intergenic 45.0%
GGTTATTTGCCTTGACGTTG+TGG + chr1_2:55560370-55560389 Msa0078190:CDS 45.0%
CATCTTCTTCCACAACGTCA+AGG - chr1_2:55560382-55560401 None:intergenic 45.0%
!! TGTGATCAGTGCCGAGTTTT+TGG + chr1_2:55560425-55560444 Msa0078190:CDS 45.0%
!! TTTGGTGAGTTGACTCGGTT+CGG + chr1_2:55560443-55560462 Msa0078190:intron 45.0%
! CGGTTTTACGTGAATCGCTT+TGG + chr1_2:55560463-55560482 Msa0078190:intron 45.0%
TCCCTTAAGAAGGAGACATG+TGG + chr1_2:55560881-55560900 Msa0078190:intron 45.0%
GGAGACATGTGGAAGAGTAA+TGG + chr1_2:55560892-55560911 Msa0078190:intron 45.0%
! AAGAGTAATGGAGTGACACG+TGG + chr1_2:55560904-55560923 Msa0078190:intron 45.0%
AAAGCTGATGGGAGATCCAT+TGG + chr1_2:55561689-55561708 Msa0078190:CDS 45.0%
! TGGTTTGTGGTATCCACCAA+TGG - chr1_2:55561708-55561727 None:intergenic 45.0%
CACAGCACATACATGGTTTG+TGG - chr1_2:55561721-55561740 None:intergenic 45.0%
CACAAACCATGTATGTGCTG+TGG + chr1_2:55561719-55561738 Msa0078190:CDS 45.0%
CTTTGTTAGGCTTCCCTCAA+TGG + chr1_2:55561833-55561852 Msa0078190:intron 45.0%
TTGTTAGGCTTCCCTCAATG+GGG + chr1_2:55561835-55561854 Msa0078190:intron 45.0%
GGTATAATCTTCCCCCATTG+AGG - chr1_2:55561850-55561869 None:intergenic 45.0%
TATACCCAACCATCCCTCAA+TGG + chr1_2:55561864-55561883 Msa0078190:CDS 45.0%
ATACCCAACCATCCCTCAAT+GGG + chr1_2:55561865-55561884 Msa0078190:CDS 45.0%
CAAGATTCCATCCCCATTGA+GGG - chr1_2:55561880-55561899 None:intergenic 45.0%
ACAAGATTCCATCCCCATTG+AGG - chr1_2:55561881-55561900 None:intergenic 45.0%
CAATGGGGATGGAATCTTGT+AGG + chr1_2:55561881-55561900 Msa0078190:intron 45.0%
! GTCTTTTTGAACCTCTCCCT+TGG + chr1_2:55562274-55562293 Msa0078190:intron 45.0%
! GTCTTTTTGAACCTCTCCCT+TGG + chr1_2:55562274-55562293 Msa0078190:intron 45.0%
TTCTCCTCATGCTACATGAG+AGG + chr1_2:55562409-55562428 Msa0078190:intron 45.0%
TCTCCTCATGCTACATGAGA+GGG + chr1_2:55562410-55562429 Msa0078190:intron 45.0%
! CATCATCACTGGTTGTCACA+TGG - chr1_2:55562592-55562611 None:intergenic 45.0%
CCAGTCTTCAACATCATCAC+TGG - chr1_2:55562603-55562622 None:intergenic 45.0%
! CCAGTGATGATGTTGAAGAC+TGG + chr1_2:55562600-55562619 Msa0078190:CDS 45.0%
GACTTGTGTTCTCTAGTTGG+TGG - chr1_2:55562631-55562650 None:intergenic 45.0%
GTAGTCCATGCCAATGGTTA+TGG + chr1_2:55562665-55562684 Msa0078190:CDS 45.0%
!! AAGAAGGTGCCCATAACCAT+TGG - chr1_2:55562678-55562697 None:intergenic 45.0%
CTCTGCCATTAACTCGAAGA+AGG - chr1_2:55562694-55562713 None:intergenic 45.0%
! CTTCGAGTTAATGGCAGAGA+AGG + chr1_2:55562695-55562714 Msa0078190:CDS 45.0%
TCGAGTTAATGGCAGAGAAG+GGG + chr1_2:55562697-55562716 Msa0078190:CDS 45.0%
GGGGGATCTAGATATCTTTC+TGG + chr1_2:55562716-55562735 Msa0078190:CDS 45.0%
TAGCTCCAAGTGTCTTGCAT+AGG - chr1_2:55562769-55562788 None:intergenic 45.0%
TATGCAAGACACTTGGAGCT+AGG + chr1_2:55562768-55562787 Msa0078190:CDS 45.0%
AAGACACTTGGAGCTAGGTT+AGG + chr1_2:55562773-55562792 Msa0078190:intron 45.0%
TGCGGTGACATAGTGAAGAT+TGG + chr1_2:55562970-55562989 Msa0078190:intron 45.0%
CTTGCTCCATGCCATTATGA+AGG + chr1_2:55563253-55563272 Msa0078190:CDS 45.0%
GAAATCCATGGTATGGTGAG+TGG + chr1_2:55563276-55563295 Msa0078190:CDS 45.0%
AATCCATGGTATGGTGAGTG+GGG + chr1_2:55563278-55563297 Msa0078190:CDS 45.0%
TGGACAAGGGTAGATTGGAT+AGG - chr1_2:55563367-55563386 None:intergenic 45.0%
GAAGATGGACAAGGGTAGAT+TGG - chr1_2:55563372-55563391 None:intergenic 45.0%
ACATAACCTGCAAAAAGCGG+CGG + chr1_2:55563546-55563565 Msa0078190:CDS 45.0%
AAAGAGTGACGTTGAACGTG+TGG + chr1_2:55563601-55563620 Msa0078190:CDS 45.0%
!! TCTTAAGGGTGCTGTTTGCA+AGG + chr1_2:55563685-55563704 Msa0078190:CDS 45.0%
TATTGCCTTTCTGAACTGGG+AGG + chr1_2:55563731-55563750 Msa0078190:CDS 45.0%
! CTTTTCCTCCCAGTTCAGAA+AGG - chr1_2:55563739-55563758 None:intergenic 45.0%
CTGGGAGGAAAAGTAGTCTA+TGG + chr1_2:55563746-55563765 Msa0078190:CDS 45.0%
GGAGGAAAAGTAGTCTATGG+TGG + chr1_2:55563749-55563768 Msa0078190:CDS 45.0%
AGCAGATGCAATCCTCAAAC+TGG + chr1_2:55563782-55563801 Msa0078190:CDS 45.0%
TAAAAGGAGGTCATGCATGC+TGG + chr1_2:55563880-55563899 Msa0078190:intron 45.0%
!! GTTTCTGGCAGGTTCTCATT+TGG + chr1_2:55564090-55564109 Msa0078190:intron 45.0%
!! GGCAGCACAATTATTTCTGG+TGG - chr1_2:55564994-55565013 None:intergenic 45.0%
TAACAAGAACTTGACCTGGG+TGG - chr1_2:55565136-55565155 None:intergenic 45.0%
ACCCAGGTCAAGTTCTTGTT+AGG + chr1_2:55565135-55565154 Msa0078190:CDS 45.0%
! AATGAAGTGGTTTGTGTCCG+AGG + chr1_2:55565162-55565181 Msa0078190:CDS 45.0%
TGTGTCCGAGGAAAATACTC+CGG + chr1_2:55565174-55565193 Msa0078190:CDS 45.0%
!! TCTTCCCGGAGTATTTTCCT+CGG - chr1_2:55565182-55565201 None:intergenic 45.0%
GGAAAATACTCCGGGAAGAA+TGG + chr1_2:55565183-55565202 Msa0078190:CDS 45.0%
! TGGGTTGAGCAAGTTTCGAA+TGG + chr1_2:55565203-55565222 Msa0078190:CDS 45.0%
AGCAAGTTTCGAATGGAACG+TGG + chr1_2:55565210-55565229 Msa0078190:CDS 45.0%
CTTGTGATATGTGTGGTGTG+TGG + chr1_2:55565298-55565317 Msa0078190:CDS 45.0%
GACTCAAAGCTTAAATCGGG+TGG + chr1_2:55565399-55565418 Msa0078190:CDS 45.0%
CCAGTCTCTCATCTTTACAG+TGG - chr1_2:55565425-55565444 None:intergenic 45.0%
CCACTGTAAAGATGAGAGAC+TGG + chr1_2:55565422-55565441 Msa0078190:CDS 45.0%
GCTAGTGTTACCACAACTAG+TGG + chr1_2:55565444-55565463 Msa0078190:CDS 45.0%
!!! TTTTTTCAATAAATTTAAAT+AGG - chr1_2:55564173-55564192 None:intergenic 5.0%
!! AAAAAATAACAAATTAATTA+GGG + chr1_2:55564187-55564206 Msa0078190:intron 5.0%
GTTATGTGGGGGAGAGATAG+AGG - chr1_2:55559866-55559885 None:intergenic 50.0%
GAGTTGTGGATCTGAAAGGG+AGG - chr1_2:55560027-55560046 None:intergenic 50.0%
TCTATCATGGTCGTTAGCGG+AGG + chr1_2:55560104-55560123 Msa0078190:exon 50.0%
ACGTCAAGGCAAATAACCGC+CGG - chr1_2:55560368-55560387 None:intergenic 50.0%
! TTGGTGGACATCCCTTTGCA+GGG - chr1_2:55561525-55561544 None:intergenic 50.0%
! ATTGGTGGACATCCCTTTGC+AGG - chr1_2:55561526-55561545 None:intergenic 50.0%
! TGGTAACGCTTACTGCACAC+TGG - chr1_2:55561659-55561678 None:intergenic 50.0%
TGTTAGGCTTCCCTCAATGG+GGG + chr1_2:55561836-55561855 Msa0078190:intron 50.0%
TACCCAACCATCCCTCAATG+GGG + chr1_2:55561866-55561885 Msa0078190:CDS 50.0%
ATCCCCATTGAGGGATGGTT+GGG - chr1_2:55561871-55561890 None:intergenic 50.0%
ATTCCATCCCCATTGAGGGA+TGG - chr1_2:55561876-55561895 None:intergenic 50.0%
! ATGTTTGTTGGTCTGGGGTG+TGG + chr1_2:55562251-55562270 Msa0078190:intron 50.0%
! TGTTTGTTGGTCTGGGGTGT+GGG + chr1_2:55562252-55562271 Msa0078190:intron 50.0%
CTACCCTCTCATGTAGCATG+AGG - chr1_2:55562416-55562435 None:intergenic 50.0%
CATGGTGTAGTCCATGCCAA+TGG + chr1_2:55562659-55562678 Msa0078190:CDS 50.0%
! GGGCACCTTCTTCGAGTTAA+TGG + chr1_2:55562686-55562705 Msa0078190:CDS 50.0%
CGAGTTAATGGCAGAGAAGG+GGG + chr1_2:55562698-55562717 Msa0078190:CDS 50.0%
GATCGCCTATGCAAGACACT+TGG + chr1_2:55562761-55562780 Msa0078190:CDS 50.0%
TATCCCCACTCACCATACCA+TGG - chr1_2:55563284-55563303 None:intergenic 50.0%
TGGCAGCTATTGTCTCACAC+AGG + chr1_2:55563316-55563335 Msa0078190:CDS 50.0%
TGGGAGAGGAAGATGGACAA+GGG - chr1_2:55563380-55563399 None:intergenic 50.0%
TGAGTGAGGCTTCTGTTCCT+GGG - chr1_2:55563399-55563418 None:intergenic 50.0%
ATATCCTGCACACGTGAGTG+AGG - chr1_2:55563413-55563432 None:intergenic 50.0%
GCTCATGCTCTGACAAAGAC+CGG - chr1_2:55563448-55563467 None:intergenic 50.0%
!!! ATCAATCCGCCGCTTTTTGC+AGG - chr1_2:55563555-55563574 None:intergenic 50.0%
GGCAGTGTCTGGGTCTAATT+GGG + chr1_2:55563649-55563668 Msa0078190:CDS 50.0%
TCTGGGTCTAATTGGGTGAG+TGG + chr1_2:55563656-55563675 Msa0078190:CDS 50.0%
GTGAGTGGTCGAGCTCTTAA+GGG + chr1_2:55563671-55563690 Msa0078190:CDS 50.0%
!! TAAGGGTGCTGTTTGCAAGG+TGG + chr1_2:55563688-55563707 Msa0078190:CDS 50.0%
TGGAATCACTTTCACGAGGG+TGG + chr1_2:55564036-55564055 Msa0078190:intron 50.0%
GAGGTTGAGCCCTGAAATAG+TGG + chr1_2:55564522-55564541 Msa0078190:intron 50.0%
ACGACTCTCTGCTTCATCCT+TGG + chr1_2:55564779-55564798 Msa0078190:CDS 50.0%
TCAGACACTGTGGCGTTCAT+GGG - chr1_2:55565015-55565034 None:intergenic 50.0%
GACGAACTAGTTGGCTACAG+CGG + chr1_2:55565099-55565118 Msa0078190:CDS 50.0%
GTGTCCGAGGAAAATACTCC+GGG + chr1_2:55565175-55565194 Msa0078190:CDS 50.0%
CTTGCTCAACCCATTCTTCC+CGG - chr1_2:55565196-55565215 None:intergenic 50.0%
GAATGGAACGTGGACTTGAG+AGG + chr1_2:55565220-55565239 Msa0078190:CDS 50.0%
TGTGGGGCTAAGGATGATGA+TGG + chr1_2:55565261-55565280 Msa0078190:CDS 50.0%
GTGATATGTGTGGTGTGTGG+CGG + chr1_2:55565301-55565320 Msa0078190:CDS 50.0%
!! CAAACAAAACGGGCTGGAAC+AGG - chr1_2:55565360-55565379 None:intergenic 50.0%
CTCGAACAAACAAAACGGGC+TGG - chr1_2:55565366-55565385 None:intergenic 50.0%
!! AGATAGGCATTGGTGGGACA+GGG + chr1_2:55565581-55565600 Msa0078190:three_prime_UTR 50.0%
GATAGAGGAGGAGAGGAGAG+TGG - chr1_2:55559851-55559870 None:intergenic 55.0%
ATGTGGGGGAGAGATAGAGG+AGG - chr1_2:55559863-55559882 None:intergenic 55.0%
TGAAAGGGAGGGAGGGAAGA+TGG - chr1_2:55560015-55560034 None:intergenic 55.0%
GTGGATCTGAAAGGGAGGGA+GGG - chr1_2:55560022-55560041 None:intergenic 55.0%
TGTGGATCTGAAAGGGAGGG+AGG - chr1_2:55560023-55560042 None:intergenic 55.0%
GAGATCTCGGTGGAGAGTTG+TGG - chr1_2:55560041-55560060 None:intergenic 55.0%
TAGAAGAGGTTACAGGCGCG+TGG - chr1_2:55560088-55560107 None:intergenic 55.0%
!! GAAACTCTCTGAAGCGGCGA+GGG - chr1_2:55560201-55560220 None:intergenic 55.0%
!! AGAAACTCTCTGAAGCGGCG+AGG - chr1_2:55560202-55560221 None:intergenic 55.0%
GCCGCTTCAGAGAGTTTCTC+CGG + chr1_2:55560203-55560222 Msa0078190:CDS 55.0%
! GCCGGAGAAACTCTCTGAAG+CGG - chr1_2:55560207-55560226 None:intergenic 55.0%
GCTTCAGAGAGTTTCTCCGG+CGG + chr1_2:55560206-55560225 Msa0078190:CDS 55.0%
AAGTGCGGAAACAACGCGGA+AGG - chr1_2:55560287-55560306 None:intergenic 55.0%
CAGCAAGTGCGGAAACAACG+CGG - chr1_2:55560291-55560310 None:intergenic 55.0%
! TGTTTCCGCACTTGCTGACG+TGG + chr1_2:55560294-55560313 Msa0078190:CDS 55.0%
ATCTGCCACGTCAGCAAGTG+CGG - chr1_2:55560302-55560321 None:intergenic 55.0%
TGGCAGATCCTCTTCCGTGT+CGG + chr1_2:55560314-55560333 Msa0078190:CDS 55.0%
TGATCTCACCGACACGGAAG+AGG - chr1_2:55560325-55560344 None:intergenic 55.0%
CATCGGTGATCTCACCGACA+CGG - chr1_2:55560331-55560350 None:intergenic 55.0%
! GTGTCGGTGAGATCACCGAT+GGG + chr1_2:55560330-55560349 Msa0078190:CDS 55.0%
TGTCGGTGAGATCACCGATG+GGG + chr1_2:55560331-55560350 Msa0078190:CDS 55.0%
GATCACCGATGGGGGTGAAT+CGG + chr1_2:55560340-55560359 Msa0078190:CDS 55.0%
ATCACCGATGGGGGTGAATC+GGG + chr1_2:55560341-55560360 Msa0078190:CDS 55.0%
ATGGTATTTGGGTGGGTGGG+TGG + chr1_2:55560854-55560873 Msa0078190:intron 55.0%
TATTTGGGTGGGTGGGTGGT+GGG + chr1_2:55560858-55560877 Msa0078190:intron 55.0%
GAACTTGTGCCCCCTGCAAA+GGG + chr1_2:55561511-55561530 Msa0078190:intron 55.0%
! TGGTGGACATCCCTTTGCAG+GGG - chr1_2:55561524-55561543 None:intergenic 55.0%
GCTGATGGGAGATCCATTGG+TGG + chr1_2:55561692-55561711 Msa0078190:CDS 55.0%
CATCCCCATTGAGGGATGGT+TGG - chr1_2:55561872-55561891 None:intergenic 55.0%
CAACCATCCCTCAATGGGGA+TGG + chr1_2:55561870-55561889 Msa0078190:CDS 55.0%
ACAGCTAGTGAAGAAGCGGC+TGG + chr1_2:55562309-55562328 Msa0078190:intron 55.0%
CAGCTAGTGAAGAAGCGGCT+GGG + chr1_2:55562310-55562329 Msa0078190:intron 55.0%
AGCTAGTGAAGAAGCGGCTG+GGG + chr1_2:55562311-55562330 Msa0078190:intron 55.0%
GGTGCCCATAACCATTGGCA+TGG - chr1_2:55562673-55562692 None:intergenic 55.0%
CTGGGAGAGGAAGATGGACA+AGG - chr1_2:55563381-55563400 None:intergenic 55.0%
CTTGTCCATCTTCCTCTCCC+AGG + chr1_2:55563379-55563398 Msa0078190:CDS 55.0%
CTGTTCCTGGGAGAGGAAGA+TGG - chr1_2:55563387-55563406 None:intergenic 55.0%
GTGAGTGAGGCTTCTGTTCC+TGG - chr1_2:55563400-55563419 None:intergenic 55.0%
!! AAGCGGCGGATTGATGCTTC+TGG + chr1_2:55563560-55563579 Msa0078190:CDS 55.0%
GAGTGACGTTGAACGTGTGG+AGG + chr1_2:55563604-55563623 Msa0078190:CDS 55.0%
!! AAGCCATGCTCAGAGTGCTG+CGG + chr1_2:55563627-55563646 Msa0078190:CDS 55.0%
GGGCAGTGTCTGGGTCTAAT+TGG + chr1_2:55563648-55563667 Msa0078190:CDS 55.0%
GGTGAGTGGTCGAGCTCTTA+AGG + chr1_2:55563670-55563689 Msa0078190:CDS 55.0%
! TCAGAAGGACGCTTTGAGCC+TGG - chr1_2:55564727-55564746 None:intergenic 55.0%
GTCAGACACTGTGGCGTTCA+TGG - chr1_2:55565016-55565035 None:intergenic 55.0%
CGGTGTAGAAGATTCCACCC+AGG + chr1_2:55565119-55565138 Msa0078190:CDS 55.0%
TGGAACGTGGACTTGAGAGG+TGG + chr1_2:55565223-55565242 Msa0078190:CDS 55.0%
TGGACTGTCGAGTGCAACTG+TGG + chr1_2:55565243-55565262 Msa0078190:CDS 55.0%
GGACTGTCGAGTGCAACTGT+GGG + chr1_2:55565244-55565263 Msa0078190:CDS 55.0%
GACTGTCGAGTGCAACTGTG+GGG + chr1_2:55565245-55565264 Msa0078190:CDS 55.0%
! TGGCGGCACACTAGGTGTTT+TGG + chr1_2:55565318-55565337 Msa0078190:CDS 55.0%
GCTGGAACAGGAGCAGTATC+AGG - chr1_2:55565348-55565367 None:intergenic 55.0%
!! CAGATAGGCATTGGTGGGAC+AGG + chr1_2:55565580-55565599 Msa0078190:three_prime_UTR 55.0%
GGGGAGAGATAGAGGAGGAG+AGG - chr1_2:55559858-55559877 None:intergenic 60.0%
TGGCGCGTGAGGTGAGATCT+CGG - chr1_2:55560054-55560073 None:intergenic 60.0%
ACCTCACGCGCCACCAAAAC+TGG + chr1_2:55560061-55560080 Msa0078190:five_prime_UTR 60.0%
!!! TCCAGTTTTGGTGGCGCGTG+AGG - chr1_2:55560065-55560084 None:intergenic 60.0%
! ACAGGCGCGTGGTCCAGTTT+TGG - chr1_2:55560077-55560096 None:intergenic 60.0%
AAGCGGCGAGGGATGGTGAA+GGG - chr1_2:55560190-55560209 None:intergenic 60.0%
! CGGTGGAAGAAGCGCGTACT+TGG - chr1_2:55560264-55560283 None:intergenic 60.0%
TGCGGAAACAACGCGGAAGG+CGG - chr1_2:55560284-55560303 None:intergenic 60.0%
! CGTGTCGGTGAGATCACCGA+TGG + chr1_2:55560329-55560348 Msa0078190:CDS 60.0%
GTCGGTGAGATCACCGATGG+GGG + chr1_2:55560332-55560351 Msa0078190:CDS 60.0%
GTATTTGGGTGGGTGGGTGG+TGG + chr1_2:55560857-55560876 Msa0078190:intron 60.0%
!! GGGTGGTGGGTCCCTTAAGA+AGG + chr1_2:55560871-55560890 Msa0078190:intron 60.0%
CGAACTTGTGCCCCCTGCAA+AGG + chr1_2:55561510-55561529 Msa0078190:intron 60.0%
GGTGGACATCCCTTTGCAGG+GGG - chr1_2:55561523-55561542 None:intergenic 60.0%
TGAAGAAGCGGCTGGGGTGT+GGG + chr1_2:55562317-55562336 Msa0078190:intron 60.0%
CAAGTCAGTGACAGCCGGAC+AGG - chr1_2:55562952-55562971 None:intergenic 60.0%
!! GTCCGGCTGTCACTGACTTG+CGG + chr1_2:55562952-55562971 Msa0078190:intron 60.0%
CACCGCAAGTCAGTGACAGC+CGG - chr1_2:55562957-55562976 None:intergenic 60.0%
GAGGCTTCTGTTCCTGGGAG+AGG - chr1_2:55563394-55563413 None:intergenic 60.0%
GAAGCCTCACTCACGTGTGC+AGG + chr1_2:55563406-55563425 Msa0078190:CDS 60.0%
!! AGCCATGCTCAGAGTGCTGC+GGG + chr1_2:55563628-55563647 Msa0078190:CDS 60.0%
CGAGTGCAACTGTGGGGCTA+AGG + chr1_2:55565251-55565270 Msa0078190:CDS 60.0%
CGCGTGAGGTGAGATCTCGG+TGG - chr1_2:55560051-55560070 None:intergenic 65.0%
!! GGCGCGTGGTCCAGTTTTGG+TGG - chr1_2:55560074-55560093 None:intergenic 65.0%
GAAGCGGCGAGGGATGGTGA+AGG - chr1_2:55560191-55560210 None:intergenic 65.0%
!! CTCTCTGAAGCGGCGAGGGA+TGG - chr1_2:55560197-55560216 None:intergenic 65.0%
GGAAACAACGCGGAAGGCGG+TGG - chr1_2:55560281-55560300 None:intergenic 65.0%
CGGTCCCGATTCACCCCCAT+CGG - chr1_2:55560348-55560367 None:intergenic 65.0%
CGATGGGGGTGAATCGGGAC+CGG + chr1_2:55560346-55560365 Msa0078190:CDS 65.0%
GTGAAGAAGCGGCTGGGGTG+TGG + chr1_2:55562316-55562335 Msa0078190:intron 65.0%
TGCCCGCAGCACTCTGAGCA+TGG - chr1_2:55563633-55563652 None:intergenic 65.0%
!! AGAGTGCTGCGGGCAGTGTC+TGG + chr1_2:55563638-55563657 Msa0078190:CDS 65.0%
! GAGTGCTGCGGGCAGTGTCT+GGG + chr1_2:55563639-55563658 Msa0078190:CDS 65.0%
GTGGTGTGTGGCGGCACACT+AGG + chr1_2:55565310-55565329 Msa0078190:CDS 65.0%
TGGGGGTGAATCGGGACCGG+CGG + chr1_2:55560349-55560368 Msa0078190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55559755 55565681 55559755 ID=Msa0078190;Name=Msa0078190
chr1_2 mRNA 55559755 55565681 55559755 ID=Msa0078190-mRNA-1;Parent=Msa0078190;Name=Msa0078190-mRNA-1;_AED=0.10;_eAED=0.10;_QI=355|0.6|0.83|0.83|1|1|6|169|726
chr1_2 exon 55559755 55560446 55559755 ID=Msa0078190-mRNA-1:exon:17310;Parent=Msa0078190-mRNA-1
chr1_2 exon 55561642 55561768 55561642 ID=Msa0078190-mRNA-1:exon:17311;Parent=Msa0078190-mRNA-1
chr1_2 exon 55561842 55561898 55561842 ID=Msa0078190-mRNA-1:exon:17312;Parent=Msa0078190-mRNA-1
chr1_2 exon 55562574 55562789 55562574 ID=Msa0078190-mRNA-1:exon:17313;Parent=Msa0078190-mRNA-1
chr1_2 exon 55563205 55563819 55563205 ID=Msa0078190-mRNA-1:exon:17314;Parent=Msa0078190-mRNA-1
chr1_2 exon 55564684 55565681 55564684 ID=Msa0078190-mRNA-1:exon:17315;Parent=Msa0078190-mRNA-1
chr1_2 five_prime_UTR 55559755 55560109 55559755 ID=Msa0078190-mRNA-1:five_prime_utr;Parent=Msa0078190-mRNA-1
chr1_2 CDS 55560110 55560446 55560110 ID=Msa0078190-mRNA-1:cds;Parent=Msa0078190-mRNA-1
chr1_2 CDS 55561642 55561768 55561642 ID=Msa0078190-mRNA-1:cds;Parent=Msa0078190-mRNA-1
chr1_2 CDS 55561842 55561898 55561842 ID=Msa0078190-mRNA-1:cds;Parent=Msa0078190-mRNA-1
chr1_2 CDS 55562574 55562789 55562574 ID=Msa0078190-mRNA-1:cds;Parent=Msa0078190-mRNA-1
chr1_2 CDS 55563205 55563819 55563205 ID=Msa0078190-mRNA-1:cds;Parent=Msa0078190-mRNA-1
chr1_2 CDS 55564684 55565512 55564684 ID=Msa0078190-mRNA-1:cds;Parent=Msa0078190-mRNA-1
chr1_2 three_prime_UTR 55565513 55565681 55565513 ID=Msa0078190-mRNA-1:three_prime_utr;Parent=Msa0078190-mRNA-1
Gene Sequence

>Msa0078190

ATGGTCGTTAGCGGAGGCAAATCCTTAAAACGTATGAAAAGAAGAGTCACCGCCGATTACCACGATTTCTTTTCATTCCCTTCACCATCCCTCGCCGCTTCAGAGAGTTTCTCCGGCGGACCTTTTCGTTCTAATGTTCACTCTTTTCTCACCAAGTACGCGCTTCTTCCACCGCCTTCCGCGTTGTTTCCGCACTTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGATGGGGGTGAATCGGGACCGGCGGTTATTTGCCTTGACGTTGTGGAAGAAGATGTTGCTAGATCCAGATCTGTGTATTGTGATCAGTGCCGAGTTTTTGGCTGCAGCGGAAATCCAGTGTGCAGTAAGCGTTACCATTTTATAATCAAAGCTGATGGGAGATCCATTGGTGGATACCACAAACCATGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGCTTCCCTCAATGGGGGAAGATTATACCCAACCATCCCTCAATGGGGATGGAATCTTGTGCAAGTCATGTAACCATGTGACAACCAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGAGTTAATGGCAGAGAAGGGGGATCTAGATATCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGCTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATACGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGAAATCCATGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGCAGCTATTGTCTCACACAGGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCATCTTCCTCTCCCAGGAACAGAAGCCTCACTCACGTGTGCAGGATATGATTTTGTATTACCGGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTTGTTGCATGATGCTCGCAAGACAGCCTCTAAGTCTGATGACATAACCTGCAAAAAGCGGCGGATTGATGCTTCTGGATTATCAAGTTCTTGGGAAAAGAGTGACGTTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGGGCAGTGTCTGGGTCTAATTGGGTGAGTGGTCGAGCTCTTAAGGGTGCTGTTTGCAAGGTGGCCTCTCCAGAGCTTCTTGATTATTGCCTTTCTGAACTGGGAGGAAAAGTAGTCTATGGTGGGATTGTTAATAGCAGATGCAATCCTCAAACTGGAGTGTATGAATTCAGGATTGATGCTACAAATGTTTTTATGGCCAACAATAATTCTCCAGGCTCAAAGCGTCCTTCTGAAGAGAATATCCTGCAATGCTTGAGATATTTATACGACTCTCTGCTTCATCCTTGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCTCAGAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGCTCTGAGATGCCGCCAGTGTCAGATTTGTCTAAATTACGTATCTCATGTCAGGTTGAACTAGTTGACCAATCTGAAGATACTGAAGCCAAAATTCCACCAGAAATAATTGTGCTGCCCATGAACGCCACAGTGTCTGACCTAAAGATTGAAGCAGCAAAAGCTTTTCAGGAAGTATATCTAATGTTTAGAAAATTTCAAGTTGACGAACTAGTTGGCTACAGCGGTGTAGAAGATTCCACCCAGGTCAAGTTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATACTCCGGGAAGAATGGGTTGAGCAAGTTTCGAATGGAACGTGGACTTGAGAGGTGGACTGTCGAGTGCAACTGTGGGGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATATGTGTGGTGTGTGGCGGCACACTAGGTGTTTTGGCATTCCTGATACTGCTCCTGTTCCAGCCCGTTTTGTTTGTTCGAGATGCCAAAACTGTGACTCAAAGCTTAAATCGGGTGGCCACTGTAAAGATGAGAGACTGGCTAGTGTTACCACAACTAGTGGTAGTTACATGGGAAACAGCTTTTCAGTGCCTTCTAATATTCGTTAA
Protein sequence

>Msa0078190

MVVSGGKSLKRMKRRVTADYHDFFSFPSPSLAASESFSGGPFRSNVHSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGGESGPAVICLDVVEEDVARSRSVYCDQCRVFGCSGNPVCSKRYHFIIKADGRSIGGYHKPCMCCGDILHLSESKLPSMGEDYTQPSLNGDGILCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGARKVSVMDVSKKYGLEYRLLHAIMKGNPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYRSLSEHELVNMRDLFCFLMGLLHDARKTASKSDDITCKKRRIDASGLSSSWEKSDVERVEEAMLRVLRAVSGSNWVSGRALKGAVCKVASPELLDYCLSELGGKVVYGGIVNSRCNPQTGVYEFRIDATNVFMANNNSPGSKRPSEENILQCLRYLYDSLLHPWMMLNYVDEETRTLAMSSAQKLLDCKQLVKDYCSEMPPVSDLSKLRISCQVELVDQSEDTEAKIPPEIIVLPMNATVSDLKIEAAKAFQEVYLMFRKFQVDELVGYSGVEDSTQVKFLLGSNEVVCVRGKYSGKNGLSKFRMERGLERWTVECNCGAKDDDGERMMACDMCGVWRHTRCFGIPDTAPVPARFVCSRCQNCDSKLKSGGHCKDERLASVTTTSGSYMGNSFSVPSNIR*