AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419840 MtrunA17_Chr7g0256211 99.558 453 1 1 1 453 1 452 0.0 921
Msa1419840 MtrunA17_Chr8g0353501 67.660 470 131 9 1 453 1 466 0.0 580
Msa1419840 MtrunA17_Chr5g0422771 52.106 451 177 10 32 453 24 464 3.20e-144 420
Msa1419840 MtrunA17_Chr1g0210151 62.739 314 101 4 145 453 38 340 1.75e-131 383
Msa1419840 MtrunA17_Chr7g0258321 58.232 328 124 5 135 453 140 463 2.05e-128 380
Msa1419840 MtrunA17_Chr1g0174701 61.688 308 102 6 157 453 204 506 4.49e-127 378
Msa1419840 MtrunA17_Chr2g0321431 61.458 288 101 2 166 453 192 469 8.54e-122 364
Msa1419840 MtrunA17_Chr3g0124601 59.000 300 110 3 159 453 70 361 6.58e-114 339
Msa1419840 MtrunA17_Chr4g0026401 49.025 359 160 5 102 453 119 461 1.75e-110 335
Msa1419840 MtrunA17_Chr3g0115371 47.076 342 156 5 128 451 13 347 3.58e-96 293
Msa1419840 MtrunA17_Chr8g0382861 51.351 296 130 4 163 453 70 356 1.07e-93 287
Msa1419840 MtrunA17_Chr5g0424861 51.389 288 128 4 168 450 67 347 2.02e-89 276
Msa1419840 MtrunA17_Chr3g0093451 56.061 198 70 4 134 320 18 209 1.11e-71 225
Msa1419840 MtrunA17_Chr5g0424851 46.606 221 110 3 231 450 9 222 4.04e-58 197
Msa1419840 MtrunA17_Chr5g0424851 43.689 206 109 2 236 441 228 426 8.04e-53 183
Msa1419840 MtrunA17_Chr1g0196951 32.367 207 110 5 245 446 59 240 4.65e-21 92.0
Msa1419840 MtrunA17_Chr8g0384821 27.126 247 140 5 229 441 8 248 1.69e-16 79.3
Msa1419840 MtrunA17_Chr2g0315631 22.535 213 124 3 240 432 8 199 7.04e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419840 AT3G12250.6 73.414 331 77 4 133 453 1 330 1.62e-168 477
Msa1419840 AT3G12250.2 73.414 331 77 4 133 453 1 330 1.62e-168 477
Msa1419840 AT3G12250.7 73.414 331 77 4 133 453 1 330 1.62e-168 477
Msa1419840 AT3G12250.1 73.414 331 77 4 133 453 1 330 1.62e-168 477
Msa1419840 AT5G06950.2 78.523 298 63 1 156 453 34 330 9.74e-167 472
Msa1419840 AT5G06950.4 78.523 298 63 1 156 453 34 330 9.74e-167 472
Msa1419840 AT5G06950.1 78.523 298 63 1 156 453 34 330 9.74e-167 472
Msa1419840 AT5G06950.5 78.523 298 63 1 156 453 34 330 9.74e-167 472
Msa1419840 AT5G06950.3 78.523 298 63 1 156 453 34 330 9.74e-167 472
Msa1419840 AT3G12250.5 77.852 298 65 1 156 453 7 303 1.59e-166 471
Msa1419840 AT3G12250.3 77.852 298 65 1 156 453 28 324 4.22e-166 471
Msa1419840 AT3G12250.4 77.852 298 65 1 156 453 59 355 6.80e-165 469
Msa1419840 AT5G06960.2 73.292 322 77 3 140 453 10 330 5.96e-155 442
Msa1419840 AT5G06960.1 73.292 322 77 3 140 453 10 330 5.96e-155 442
Msa1419840 AT5G06960.3 77.083 288 65 1 166 453 24 310 7.17e-155 441
Msa1419840 AT1G68640.1 70.103 291 84 2 165 453 163 452 7.37e-138 404
Msa1419840 AT1G08320.2 58.104 327 124 4 130 453 13 329 7.79e-128 375
Msa1419840 AT1G08320.5 58.104 327 124 4 130 453 13 329 7.79e-128 375
Msa1419840 AT1G08320.1 58.104 327 124 4 130 453 137 453 2.70e-126 375
Msa1419840 AT1G08320.4 58.104 327 124 4 130 453 137 453 2.70e-126 375
Msa1419840 AT1G08320.3 58.104 327 124 4 130 453 137 453 2.70e-126 375
Msa1419840 AT5G06839.2 56.954 302 117 3 165 453 115 416 4.15e-117 349
Msa1419840 AT5G06839.1 57.143 301 117 3 165 453 115 415 1.89e-116 348
Msa1419840 AT5G06839.3 57.143 301 117 3 165 453 158 458 1.99e-116 349
Msa1419840 AT5G10030.5 54.688 320 132 4 139 453 51 362 2.52e-113 338
Msa1419840 AT5G10030.3 54.688 320 132 4 139 453 51 362 2.52e-113 338
Msa1419840 AT5G10030.1 54.688 320 132 4 139 453 51 362 2.52e-113 338
Msa1419840 AT5G10030.4 54.688 320 132 4 139 453 51 362 2.52e-113 338
Msa1419840 AT5G10030.2 54.688 320 132 4 139 453 51 362 2.52e-113 338
Msa1419840 AT1G22070.1 56.393 305 124 3 153 453 83 382 4.38e-112 335
Msa1419840 AT5G65210.5 50.716 349 141 5 128 453 26 366 2.93e-109 328
Msa1419840 AT5G65210.7 50.716 349 141 5 128 453 26 366 2.93e-109 328
Msa1419840 AT5G65210.3 50.716 349 141 5 128 453 26 366 2.93e-109 328
Msa1419840 AT5G65210.1 50.716 349 141 5 128 453 26 366 2.93e-109 328
Msa1419840 AT5G65210.2 50.716 349 141 5 128 453 26 366 2.93e-109 328
Msa1419840 AT5G65210.4 50.716 349 141 5 128 453 26 366 2.93e-109 328
Msa1419840 AT5G65210.6 55.667 300 120 3 159 453 5 296 3.56e-109 325
Msa1419840 AT1G77920.1 49.046 367 155 6 89 453 30 366 5.24e-108 324
Msa1419840 AT1G58330.1 26.244 221 145 5 235 443 9 223 6.92e-15 74.3
Msa1419840 AT3G14880.2 24.675 231 131 5 228 432 1 214 2.16e-14 73.2
Msa1419840 AT3G14880.1 23.651 241 134 5 228 435 1 224 2.72e-13 70.1

Find 156 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTGTTGTTTCTTCTTTC+TGG -0.041878 tig0024731:+10732 Msa1419840:five_prime_UTR
CCTTCTCGAATTTCTGATTT+TGG 0.114816 tig0024731:+12173 Msa1419840:CDS
GTCATTTCTGAAACAAATTA+TGG 0.166302 tig0024731:-16079 None:intergenic
AAGGCCTAGTTGTGGATTTA+AGG 0.176334 tig0024731:+11200 Msa1419840:intron
ATCAACTGTTGTTCAGTTAA+AGG 0.191657 tig0024731:-14751 None:intergenic
AAAAGACGCGCTGCCAAATT+TGG 0.207656 tig0024731:+12995 Msa1419840:CDS
CCAGATGTTGAAGCCAAATT+TGG 0.211263 tig0024731:-13008 None:intergenic
AGCCATTTGTCCCATGTAAT+TGG 0.245079 tig0024731:-14911 None:intergenic
CCAAATTTGGCTTCAACATC+TGG 0.245789 tig0024731:+13008 Msa1419840:CDS
ATCTGTTGTTTCTTCTTTCT+GGG 0.252124 tig0024731:+10733 Msa1419840:five_prime_UTR
TCTGAAAGCATACAAATATA+TGG 0.259906 tig0024731:+16020 Msa1419840:three_prime_UTR
CCCAACCCATCAGGTGCTTC+TGG 0.270597 tig0024731:+14880 Msa1419840:CDS
TTAGGTGCTGATATTCAATT+TGG 0.276431 tig0024731:+12801 Msa1419840:CDS
AGAAACAACAGATGAGAAAA+TGG 0.276869 tig0024731:-10723 None:intergenic
TGCATGAAGCTGGTGTCTTT+TGG 0.285414 tig0024731:+15538 Msa1419840:three_prime_UTR
AACCTCTCTGCTGCAATTGC+TGG 0.307118 tig0024731:+12951 Msa1419840:CDS
TTCAACTTTGTCACTTGCTT+AGG 0.309843 tig0024731:+10686 Msa1419840:five_prime_UTR
GCTGTAGCTCTTGCTCTAGT+TGG 0.316242 tig0024731:-13565 None:intergenic
GCAGCTTCTTGTAAGTCATT+TGG 0.321728 tig0024731:+14726 Msa1419840:intron
GATGGTTAGAAGAGCATAAT+AGG 0.327313 tig0024731:+14344 Msa1419840:CDS
ATAAGTCTTGTTATTGTTGT+TGG 0.329879 tig0024731:+10655 Msa1419840:five_prime_UTR
GAGGATGGTTTCCTCTCTCT+TGG 0.334154 tig0024731:+15816 Msa1419840:three_prime_UTR
CTGGCGGCCATCGTGAGAAT+TGG 0.336333 tig0024731:+13027 Msa1419840:CDS
TATTGCAGCCCTTAGTTCAT+TGG 0.346864 tig0024731:-14371 None:intergenic
TCATGTGGATTGGAGGCTTT+CGG 0.349268 tig0024731:+14545 Msa1419840:CDS
TGGCGGCCATCGTGAGAATT+GGG 0.354181 tig0024731:+13028 Msa1419840:CDS
GTGATAGAAATAGTTAGATT+TGG 0.357389 tig0024731:+16112 Msa1419840:three_prime_UTR
GGAATATTTATTTCAAGTAC+TGG 0.364580 tig0024731:+13721 Msa1419840:CDS
GAAAAGCCGACTGAGGAAAA+AGG 0.365804 tig0024731:+13401 Msa1419840:CDS
CATACTTCTGCTAAGATTCA+TGG 0.370102 tig0024731:-12234 None:intergenic
TACCATTTCCACTCATTGAA+TGG 0.377090 tig0024731:-13753 None:intergenic
TCTCAATAATTTGATTATAT+AGG 0.377920 tig0024731:+15698 Msa1419840:three_prime_UTR
ACACTGTTGTATGTATATAT+TGG 0.384512 tig0024731:+15870 Msa1419840:three_prime_UTR
TCGGTCATCTGAACTTCTTA+AGG 0.384806 tig0024731:+14564 Msa1419840:CDS
TTTAACTGAACAACAGTTGA+TGG 0.387147 tig0024731:+14753 Msa1419840:CDS
ATTTACATGGAATTATTAGA+TGG 0.388302 tig0024731:-11329 None:intergenic
TCAACTTTGTCACTTGCTTA+GGG 0.389594 tig0024731:+10687 Msa1419840:five_prime_UTR
TCAATTTGGTGCTTTAAGTA+AGG 0.395237 tig0024731:+12815 Msa1419840:CDS
TCAGAAATCAAGCTTATTTG+AGG 0.402345 tig0024731:+15797 Msa1419840:three_prime_UTR
CTTTCCGAGACATTGGCTAA+TGG 0.402534 tig0024731:+14853 Msa1419840:CDS
AGAAAGATAAGATAAGAAAA+TGG 0.403314 tig0024731:+11231 Msa1419840:five_prime_UTR
TGTATGATAGATAGAGTTGA+AGG 0.404237 tig0024731:+15721 Msa1419840:three_prime_UTR
GATAAGAAAATGGTTATTGA+TGG 0.411169 tig0024731:+11241 Msa1419840:exon
CTCAAAATCGTGAAGCTGCC+AGG 0.414559 tig0024731:+13379 Msa1419840:CDS
AAAGCAAATAGCCAAGCTTT+AGG 0.415265 tig0024731:+12783 Msa1419840:CDS
AGTTGTGGATTTAAGGTTTG+TGG 0.416273 tig0024731:+11207 Msa1419840:five_prime_UTR
TGCGAGCTCTGAGTTCTCTA+TGG 0.421587 tig0024731:+15464 Msa1419840:CDS
TCATTTCTGAAACAAATTAT+GGG 0.421783 tig0024731:-16078 None:intergenic
ACCCATTCAATGAGTGGAAA+TGG 0.422756 tig0024731:+13751 Msa1419840:CDS
GGAAAGCTTGGTACTCTTGA+GGG 0.428090 tig0024731:+14943 Msa1419840:CDS
CTGTAGCTCTTGCTCTAGTT+GGG 0.432408 tig0024731:-13564 None:intergenic
GTTGCAACGTTTGCTGCCTC+AGG 0.435590 tig0024731:-15369 None:intergenic
CTGCAATGCGTCCATTCCTT+GGG 0.435984 tig0024731:-14824 None:intergenic
AAGAGCTCGAGCTGATTGTC+TGG 0.439976 tig0024731:-15413 None:intergenic
CTCTATGGCTTGCACGGCCA+AGG 0.444992 tig0024731:+15479 Msa1419840:CDS
TTTGAAACAGTTTACTCCCT+TGG 0.445923 tig0024731:-15496 None:intergenic
TGAAAGATCAAAAGACAAAT+CGG 0.446752 tig0024731:+13260 Msa1419840:CDS
TGGAAATGTGGCCAATTACA+TGG 0.448525 tig0024731:+14900 Msa1419840:CDS
GCTGCAATGCGTCCATTCCT+TGG 0.454033 tig0024731:-14825 None:intergenic
TATTCTCCTCCACATACTGC+TGG 0.454439 tig0024731:+15628 Msa1419840:three_prime_UTR
ATAGGCAAACCAATGAACTA+AGG 0.455979 tig0024731:+14362 Msa1419840:CDS
CCAGAAGCACCTGATGGGTT+GGG 0.456476 tig0024731:-14880 None:intergenic
GACACTAACAAGGTTGTTAA+CGG 0.458291 tig0024731:+11287 Msa1419840:CDS
ACCATTTCCACTCATTGAAT+GGG 0.458496 tig0024731:-13752 None:intergenic
GCTACAGCGAGCACGCCAGC+AGG 0.459908 tig0024731:+13580 Msa1419840:CDS
AAAAGACAAATCGGATCAAA+AGG 0.461930 tig0024731:+13269 Msa1419840:CDS
CTGAAAGCATACAAATATAT+GGG 0.465059 tig0024731:+16021 Msa1419840:three_prime_UTR
TCCAGAAGCACCTGATGGGT+TGG 0.465437 tig0024731:-14881 None:intergenic
CTCAATTTGAAGATATCTAC+AGG 0.469063 tig0024731:+14446 Msa1419840:CDS
GAAATCCTAGAGATTGTTCA+AGG 0.473552 tig0024731:-12199 None:intergenic
ACCTCTCTGCTGCAATTGCT+GGG 0.478042 tig0024731:+12952 Msa1419840:CDS
CACATGAAACACCTCTCAGC+TGG 0.482882 tig0024731:-14529 None:intergenic
GGGACAAATGGCTATGGCCA+TGG 0.486901 tig0024731:+14921 Msa1419840:CDS
GGCCAATTACATGGGACAAA+TGG 0.487544 tig0024731:+14909 Msa1419840:CDS
TGCAACAATTAGAGAGCAGC+AGG 0.488377 tig0024731:+13531 Msa1419840:CDS
AATGGTTCACCCAACCCATC+AGG 0.491558 tig0024731:+14871 Msa1419840:CDS
GAGAACTCAGAGCTCGCAGC+CGG 0.499226 tig0024731:-15459 None:intergenic
GGAGCCCTTGAACAATCTCT+AGG 0.499416 tig0024731:+12194 Msa1419840:CDS
CTGCAATAAATTCTCATGCT+GGG 0.499442 tig0024731:+14386 Msa1419840:CDS
TTGGATTTCAGGGGCATGGA+GGG 0.504205 tig0024731:+12137 Msa1419840:intron
ACACTAACAAGGTTGTTAAC+GGG 0.504918 tig0024731:+11288 Msa1419840:CDS
AAACGTTGCAACAAATGCTT+CGG 0.506047 tig0024731:+15380 Msa1419840:CDS
GAGAGGTGTTTCATGTGGAT+TGG 0.507638 tig0024731:+14535 Msa1419840:CDS
ATGTTCTTTCTGCATGAAGC+TGG 0.508217 tig0024731:+15528 Msa1419840:three_prime_UTR
TGTTCAGACGTTAAGACGGC+TGG 0.509648 tig0024731:+13356 Msa1419840:intron
GGTACAGTCCATTGCAAACT+CGG 0.515997 tig0024731:+12923 Msa1419840:intron
GCTGCAATAAATTCTCATGC+TGG 0.516591 tig0024731:+14385 Msa1419840:CDS
AGGTGTTTCATGTGGATTGG+AGG 0.518347 tig0024731:+14538 Msa1419840:CDS
GAATATCAGCACCTAAAGCT+TGG 0.527661 tig0024731:-12794 None:intergenic
GGGAGAGTCCAACATGGCTG+AGG 0.529600 tig0024731:+13049 Msa1419840:CDS
GCAATCACTTTCCGAGACAT+TGG 0.530262 tig0024731:+14846 Msa1419840:CDS
TGTTTACAAGCACCACAACT+AGG 0.531123 tig0024731:-15586 None:intergenic
GCTTTCATTTGATTAAACAC+TGG 0.536527 tig0024731:-12765 None:intergenic
TCCTCCACATACTGCTGGTG+TGG 0.537278 tig0024731:+15633 Msa1419840:three_prime_UTR
TACAGAAGACAAGAATCAAA+TGG 0.538000 tig0024731:+13097 Msa1419840:CDS
CAATAAGTGATTATTTCTCC+CGG 0.538111 tig0024731:+15440 Msa1419840:CDS
AAATCAAGCTTATTTGAGGA+TGG 0.541729 tig0024731:+15801 Msa1419840:three_prime_UTR
GTATGATAGATAGAGTTGAA+GGG 0.543083 tig0024731:+15722 Msa1419840:three_prime_UTR
GCTATGGCCATGGGAAAGCT+TGG 0.544267 tig0024731:+14931 Msa1419840:CDS
ATAAGAAAATGGTTATTGAT+GGG 0.544270 tig0024731:+11242 Msa1419840:exon
TTAACTGAACAACAGTTGAT+GGG 0.552406 tig0024731:+14754 Msa1419840:CDS
AGGAAAAGAAACCAAGAGAG+AGG 0.555494 tig0024731:-15827 None:intergenic
GGACAAATGGCTATGGCCAT+GGG 0.556028 tig0024731:+14922 Msa1419840:CDS
AGACGCTCTTTCCCAAGGAA+TGG 0.556679 tig0024731:+14813 Msa1419840:CDS
GTTTATATCCGAGTTTGCAA+TGG 0.558175 tig0024731:-12931 None:intergenic
GGGAAAGCTTGGTACTCTTG+AGG 0.558797 tig0024731:+14942 Msa1419840:CDS
TATGATAGATAGAGTTGAAG+GGG 0.561298 tig0024731:+15723 Msa1419840:three_prime_UTR
ATCTCTAGGATTTCGTGTTG+AGG 0.565350 tig0024731:+12208 Msa1419840:CDS
TTAGATGGAGGTGCGTAGCT+CGG 0.566017 tig0024731:-11314 None:intergenic
AGCGCTTCCCTCAGCCATGT+TGG 0.566699 tig0024731:-13057 None:intergenic
ACATTTCCAGAAGCACCTGA+TGG 0.566763 tig0024731:-14886 None:intergenic
GAAGATATCTACAGGCTGAA+AGG 0.567290 tig0024731:+14454 Msa1419840:CDS
TCCACATTCTATCAGGAATG+TGG 0.571375 tig0024731:+14500 Msa1419840:CDS
TCTTGAGGGATTTCTTCGCC+AGG 0.573076 tig0024731:+14957 Msa1419840:CDS
ATCAGGTGCTTCTGGAAATG+TGG 0.573606 tig0024731:+14888 Msa1419840:CDS
TGGTTATTGATGGGCAGTAG+AGG 0.574524 tig0024731:+11251 Msa1419840:exon
TACATGGAATTATTAGATGG+AGG 0.577181 tig0024731:-11326 None:intergenic
TCTATGGCTTGCACGGCCAA+GGG 0.578391 tig0024731:+15480 Msa1419840:CDS
TAGGCAAACCAATGAACTAA+GGG 0.579382 tig0024731:+14363 Msa1419840:CDS
CATTTCCAGAAGCACCTGAT+GGG 0.580742 tig0024731:-14885 None:intergenic
CAGCTGAGAGGTGTTTCATG+TGG 0.583907 tig0024731:+14530 Msa1419840:CDS
TGCAATAAATTCTCATGCTG+GGG 0.590748 tig0024731:+14387 Msa1419840:CDS
TCCACATTCCTGATAGAATG+TGG 0.593998 tig0024731:-14501 None:intergenic
CAAGAGACATATCAACTGAC+TGG 0.596939 tig0024731:-15928 None:intergenic
GCAACCACAAACCATTAAGC+AGG 0.597550 tig0024731:-15847 None:intergenic
CAAACCTTAAATCCACAACT+AGG 0.597789 tig0024731:-11204 None:intergenic
TTACATGGGACAAATGGCTA+TGG 0.598092 tig0024731:+14915 Msa1419840:CDS
AGAACTCAGAGCTCGCAGCC+GGG 0.599159 tig0024731:-15458 None:intergenic
TGTACCACACCAGCAGTATG+TGG 0.600053 tig0024731:-15637 None:intergenic
TGAAATTGTCGACAATGGTA+CGG 0.603907 tig0024731:-14420 None:intergenic
TGAGTTCTCTATGGCTTGCA+CGG 0.606772 tig0024731:+15473 Msa1419840:CDS
GCTGAAGACGCTCTTTCCCA+AGG 0.608444 tig0024731:+14808 Msa1419840:CDS
GAGCAGACCCATTCAATGAG+TGG 0.614912 tig0024731:+13745 Msa1419840:CDS
GGAGAGTCCAACATGGCTGA+GGG 0.616774 tig0024731:+13050 Msa1419840:CDS
CCAAAATCAGAAATTCGAGA+AGG 0.617363 tig0024731:-12173 None:intergenic
TGAACCATTAGCCAATGTCT+CGG 0.617863 tig0024731:-14857 None:intergenic
GGCGGCCATCGTGAGAATTG+GGG 0.627011 tig0024731:+13029 Msa1419840:CDS
AAGAGTACCAAGCTTTCCCA+TGG 0.628858 tig0024731:-14938 None:intergenic
GGAAATGTGGCCAATTACAT+GGG 0.630650 tig0024731:+14901 Msa1419840:CDS
AACTGCTGAGGACACTAACA+AGG 0.634040 tig0024731:+11277 Msa1419840:CDS
AATTTGGCTTCAACATCTGG+CGG 0.636343 tig0024731:+13011 Msa1419840:CDS
TTTGGATTTCAGGGGCATGG+AGG 0.641756 tig0024731:+12136 Msa1419840:intron
TGTGTTTCAAGGCCTAGTTG+TGG 0.646964 tig0024731:+11192 Msa1419840:intron
AGTCATGAAATTGTCGACAA+TGG 0.650887 tig0024731:-14425 None:intergenic
CAGTAGAGGTAGAACTGCTG+AGG 0.651706 tig0024731:+11265 Msa1419840:CDS
ACCCAGCAATTGCAGCAGAG+AGG 0.653003 tig0024731:-12953 None:intergenic
ATGATAGATAGAGTTGAAGG+GGG 0.653631 tig0024731:+15724 Msa1419840:three_prime_UTR
ACTCTCCCCAATTCTCACGA+TGG 0.657176 tig0024731:-13034 None:intergenic
CTGCCAGGAAAAGCCGACTG+AGG 0.660519 tig0024731:+13394 Msa1419840:CDS
GTTTATAGGCTGATAACCTG+AGG 0.665954 tig0024731:+15353 Msa1419840:intron
AAATCCTAGAGATTGTTCAA+GGG 0.671979 tig0024731:-12198 None:intergenic
TGTGGAAGACTCCAGCTGAG+AGG 0.690086 tig0024731:+14518 Msa1419840:CDS
GTTGTGAAGAAGCCTAGTTG+TGG 0.701594 tig0024731:+15574 Msa1419840:three_prime_UTR
GAATTGGGGAGAGTCCAACA+TGG 0.702168 tig0024731:+13043 Msa1419840:CDS
ACCACACCAGCAGTATGTGG+AGG 0.703241 tig0024731:-15634 None:intergenic
TTGATGCAGAATACGCACGA+TGG 0.731911 tig0024731:+14326 Msa1419840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGAAAGTAAAAATAAA+AGG - tig0024731:10875-10894 None:intergenic 10.0%
!! AGCATATTAAATTAATAAAA+GGG - tig0024731:12517-12536 None:intergenic 10.0%
!!! TATCATTATTTACTTTTTTA+AGG - tig0024731:12654-12673 None:intergenic 10.0%
!!! AGAAATAATATTTGTATTTT+AGG + tig0024731:15754-15773 Msa1419840:three_prime_UTR 10.0%
!! ATGAGAATTTAATGAAAATT+GGG - tig0024731:10777-10796 None:intergenic 15.0%
!! TATGAGAATTTAATGAAAAT+TGG - tig0024731:10778-10797 None:intergenic 15.0%
!!! TTATTTTTTTCTTTCTGTTT+TGG + tig0024731:10899-10918 Msa1419840:intron 15.0%
!! AACAAAATAAGAAAAAACAT+TGG - tig0024731:11021-11040 None:intergenic 15.0%
!! TTTGTTAAAAATGTTAGTTA+AGG + tig0024731:11035-11054 Msa1419840:intron 15.0%
!! AAGATTAACATTAAACAAAA+GGG - tig0024731:11366-11385 None:intergenic 15.0%
!! TAAGATTAACATTAAACAAA+AGG - tig0024731:11367-11386 None:intergenic 15.0%
!!! GTTTTGTTTAAATTTATTGT+AGG + tig0024731:11423-11442 Msa1419840:intron 15.0%
!! AAAAAAAAACAACAAAAAAG+GGG - tig0024731:12284-12303 None:intergenic 15.0%
!! CAAAAAAAAACAACAAAAAA+GGG - tig0024731:12285-12304 None:intergenic 15.0%
!! CAGCATATTAAATTAATAAA+AGG - tig0024731:12518-12537 None:intergenic 15.0%
!! AAGATGATATACAAATAAAT+AGG - tig0024731:12739-12758 None:intergenic 15.0%
!!! TTGCAATTTATTGATTTTAT+TGG - tig0024731:12853-12872 None:intergenic 15.0%
!! ATTTACAATTTAACAGAAAA+AGG - tig0024731:13432-13451 None:intergenic 15.0%
!!! TTTGATTATTTATCTTTTCT+AGG + tig0024731:13699-13718 Msa1419840:intron 15.0%
!!! TTGATTATTTATCTTTTCTA+GGG + tig0024731:13700-13719 Msa1419840:intron 15.0%
!! TCTCAATAATTTGATTATAT+AGG + tig0024731:15698-15717 Msa1419840:three_prime_UTR 15.0%
!! AGAAAGATAAGATAAGAAAA+TGG + tig0024731:11231-11250 Msa1419840:five_prime_UTR 20.0%
!! ATAAGAAAATGGTTATTGAT+GGG + tig0024731:11242-11261 Msa1419840:exon 20.0%
!! ATTTACATGGAATTATTAGA+TGG - tig0024731:11332-11351 None:intergenic 20.0%
!!! TTGATAGTTCTTAAATTTAG+AGG + tig0024731:11632-11651 Msa1419840:intron 20.0%
!!! AGATGAACAAAGTTTTAAAT+TGG + tig0024731:11655-11674 Msa1419840:intron 20.0%
!!! GATGAACAAAGTTTTAAATT+GGG + tig0024731:11656-11675 Msa1419840:intron 20.0%
!!! ATGAACAAAGTTTTAAATTG+GGG + tig0024731:11657-11676 Msa1419840:intron 20.0%
!! CAAAATGTTAAACATATGTT+GGG - tig0024731:12109-12128 None:intergenic 20.0%
!! ACAAAATGTTAAACATATGT+TGG - tig0024731:12110-12129 None:intergenic 20.0%
!!! TTAACATTTTGTCATGATTT+TGG + tig0024731:12118-12137 Msa1419840:intron 20.0%
!! GCAAAAAAAAACAACAAAAA+AGG - tig0024731:12286-12305 None:intergenic 20.0%
!!! TGTGAACTTTTGTTTTATTA+AGG + tig0024731:12311-12330 Msa1419840:intron 20.0%
!!! GTGAACTTTTGTTTTATTAA+GGG + tig0024731:12312-12331 Msa1419840:intron 20.0%
!!! GTGAACTTTTGTTTTATTAA+GGG - tig0024731:12312-12331 None:intergenic 20.0%
!!! TGTGAACTTTTGTTTTATTA+AGG - tig0024731:12311-12330 None:intergenic 20.0%
!! ATTGCTTTACTTTAATCATA+CGG + tig0024731:13122-13141 Msa1419840:intron 20.0%
!! CAAAAGCAAAATTTAACATA+TGG - tig0024731:13338-13357 None:intergenic 20.0%
!! ATGAAAAAAGAAACATATCA+CGG - tig0024731:13964-13983 None:intergenic 20.0%
!!! GATATTTTTAAAGGAAATGT+TGG - tig0024731:13995-14014 None:intergenic 20.0%
!!! AAGAGGTTTGATATTTTTAA+AGG - tig0024731:14004-14023 None:intergenic 20.0%
!! AAATATCTGTATATGTTAAG+AGG - tig0024731:14021-14040 None:intergenic 20.0%
!!! TGTTAGAACTTATTTTTAGT+CGG + tig0024731:14059-14078 Msa1419840:intron 20.0%
!! TATACTCTTTATCACTTTAT+TGG - tig0024731:15171-15190 None:intergenic 20.0%
!!! TCATTTCTGAAACAAATTAT+GGG - tig0024731:16081-16100 None:intergenic 20.0%
!!! ATAAGTCTTGTTATTGTTGT+TGG + tig0024731:10655-10674 Msa1419840:five_prime_UTR 25.0%
! AATTTAATGAAAATTGGGAG+AGG - tig0024731:10772-10791 None:intergenic 25.0%
! AAAAACATTGGCAACAAAAT+AGG - tig0024731:11009-11028 None:intergenic 25.0%
! GATAAGAAAATGGTTATTGA+TGG + tig0024731:11241-11260 Msa1419840:exon 25.0%
! ATGTTAATCTTACTCTTGAT+TGG + tig0024731:11375-11394 Msa1419840:intron 25.0%
!!! TTGGTCTTGCTATTAATTTT+AGG + tig0024731:11394-11413 Msa1419840:intron 25.0%
!!! TGGTCTTGCTATTAATTTTA+GGG + tig0024731:11395-11414 Msa1419840:intron 25.0%
! TGACTATATAAACCATCTAA+AGG - tig0024731:11451-11470 None:intergenic 25.0%
! GTAGAAATTATGCATGTTAT+TGG + tig0024731:11504-11523 Msa1419840:intron 25.0%
! TATGATGTTGAATTGAAGTT+AGG + tig0024731:11532-11551 Msa1419840:intron 25.0%
! ATGATGTTGAATTGAAGTTA+GGG + tig0024731:11533-11552 Msa1419840:intron 25.0%
!!! TAAACGGAAGTATTTTTACA+GGG - tig0024731:11802-11821 None:intergenic 25.0%
! GTTATGTTCTATGAAGTAAA+CGG - tig0024731:11818-11837 None:intergenic 25.0%
!! CAAAAAGAAAAGAGCATATA+AGG - tig0024731:11924-11943 None:intergenic 25.0%
!! TATATGCTCTTTTCTTTTTG+TGG + tig0024731:11924-11943 Msa1419840:intron 25.0%
! AATAGCAATCTTCTATGAAA+AGG - tig0024731:11955-11974 None:intergenic 25.0%
! ACAAATAAATAGGTTAATCG+AGG - tig0024731:12729-12748 None:intergenic 25.0%
!!! AATGAAGATGGCTATTTTAT+TGG - tig0024731:13208-13227 None:intergenic 25.0%
! TGAAAGATCAAAAGACAAAT+CGG + tig0024731:13260-13279 Msa1419840:CDS 25.0%
!! GGAATATTTATTTCAAGTAC+TGG + tig0024731:13721-13740 Msa1419840:CDS 25.0%
!! TAACATTGAATTTAAAGCTG+TGG + tig0024731:13881-13900 Msa1419840:intron 25.0%
!!! GATTAAGTGTTGGATTTTTA+AGG + tig0024731:14649-14668 Msa1419840:intron 25.0%
! AATTAATTGTGTACCTTAGA+GGG + tig0024731:15195-15214 Msa1419840:intron 25.0%
! AAAGGAAAACAAAAGTGAAT+TGG - tig0024731:15325-15344 None:intergenic 25.0%
! ACACTGTTGTATGTATATAT+TGG + tig0024731:15870-15889 Msa1419840:three_prime_UTR 25.0%
! GTTCTTGAGATAAAAATTGT+AGG + tig0024731:15980-15999 Msa1419840:three_prime_UTR 25.0%
!! TCTGAAAGCATACAAATATA+TGG + tig0024731:16020-16039 Msa1419840:three_prime_UTR 25.0%
!! CTGAAAGCATACAAATATAT+GGG + tig0024731:16021-16040 Msa1419840:three_prime_UTR 25.0%
!!! GTCATTTCTGAAACAAATTA+TGG - tig0024731:16082-16101 None:intergenic 25.0%
AGAAACAACAGATGAGAAAA+TGG - tig0024731:10726-10745 None:intergenic 30.0%
!! ATCTGTTGTTTCTTCTTTCT+GGG + tig0024731:10733-10752 Msa1419840:five_prime_UTR 30.0%
!!! TCAGCTTTGTTTTTACAACA+AGG + tig0024731:10845-10864 Msa1419840:intron 30.0%
!!! CTTTGTTTTTACAACAAGGT+GGG + tig0024731:10849-10868 Msa1419840:intron 30.0%
!! CAGTTTTGTACTTTGTTTCT+AGG + tig0024731:10941-10960 Msa1419840:intron 30.0%
!!! TTTTGTACTTTGTTTCTAGG+CGG + tig0024731:10944-10963 Msa1419840:intron 30.0%
TAACTACAAGTTCATGAAAC+AGG - tig0024731:11077-11096 None:intergenic 30.0%
!!! TGTTTTTTCTTCTTCTCATG+TGG + tig0024731:11147-11166 Msa1419840:intron 30.0%
!!! GTTTTTTCTTCTTCTCATGT+GGG + tig0024731:11148-11167 Msa1419840:intron 30.0%
GTTGTATTCTTTGTGTTTCA+AGG + tig0024731:11181-11200 Msa1419840:intron 30.0%
TACATGGAATTATTAGATGG+AGG - tig0024731:11329-11348 None:intergenic 30.0%
ATTCCATGTAAATTTGTCTG+AGG + tig0024731:11339-11358 Msa1419840:intron 30.0%
!!! GGTCTTGCTATTAATTTTAG+GGG + tig0024731:11396-11415 Msa1419840:intron 30.0%
! AATGCTGTTGATGCTTTTAT+AGG + tig0024731:11714-11733 Msa1419840:intron 30.0%
!!! GTAAACGGAAGTATTTTTAC+AGG - tig0024731:11803-11822 None:intergenic 30.0%
TTACTTCATAGAACATAACG+CGG + tig0024731:11819-11838 Msa1419840:intron 30.0%
CTCAAGATCTAACAACAAAT+CGG - tig0024731:12003-12022 None:intergenic 30.0%
CCATGTTTCAAAGCTAAAAA+GGG - tig0024731:12039-12058 None:intergenic 30.0%
TCCATGTTTCAAAGCTAAAA+AGG - tig0024731:12040-12059 None:intergenic 30.0%
TGAAACATGGATTTCATCAT+TGG + tig0024731:12049-12068 Msa1419840:intron 30.0%
! TTGTCATGATTTTGGATTTC+AGG + tig0024731:12126-12145 Msa1419840:intron 30.0%
! TGTCATGATTTTGGATTTCA+GGG + tig0024731:12127-12146 Msa1419840:intron 30.0%
AAATCCTAGAGATTGTTCAA+GGG - tig0024731:12201-12220 None:intergenic 30.0%
TACAAACAAATGCAACAAGT+TGG - tig0024731:12613-12632 None:intergenic 30.0%
!!! TACTTTTTTAAGGACTTCTC+TGG - tig0024731:12644-12663 None:intergenic 30.0%
GCTTTCATTTGATTAAACAC+TGG - tig0024731:12768-12787 None:intergenic 30.0%
!! TTAGGTGCTGATATTCAATT+TGG + tig0024731:12801-12820 Msa1419840:CDS 30.0%
!! TCAATTTGGTGCTTTAAGTA+AGG + tig0024731:12815-12834 Msa1419840:CDS 30.0%
TACAGAAGACAAGAATCAAA+TGG + tig0024731:13097-13116 Msa1419840:CDS 30.0%
CTGCAAAACAAAAATGAAGA+TGG - tig0024731:13220-13239 None:intergenic 30.0%
! TTTGTCTTTTGATCTTTCAC+TGG - tig0024731:13259-13278 None:intergenic 30.0%
AAAAGACAAATCGGATCAAA+AGG + tig0024731:13269-13288 Msa1419840:CDS 30.0%
ATTCTTCTTTCCATTCATTC+AGG + tig0024731:13502-13521 Msa1419840:intron 30.0%
!! TCTTTGTTGCTATTTCATTC+TGG + tig0024731:13652-13671 Msa1419840:intron 30.0%
AAAAATTCCTCCAAGTAGAA+GGG - tig0024731:13842-13861 None:intergenic 30.0%
! TTCTACTTGGAGGAATTTTT+CGG + tig0024731:13842-13861 Msa1419840:intron 30.0%
!!! AGAGTTAATGGATTTTGCAT+TGG - tig0024731:13913-13932 None:intergenic 30.0%
ATGCAAAATCCATTAACTCT+TGG + tig0024731:13913-13932 Msa1419840:intron 30.0%
GTCTTTAATCACACATATGA+TGG - tig0024731:14153-14172 None:intergenic 30.0%
CAAAAACGTCAACACAATTT+AGG - tig0024731:14286-14305 None:intergenic 30.0%
!! CTAAATTGTGTTGACGTTTT+TGG + tig0024731:14284-14303 Msa1419840:intron 30.0%
CTCAATTTGAAGATATCTAC+AGG + tig0024731:14446-14465 Msa1419840:CDS 30.0%
CCATAGAGAATAAACAAATG+AGG - tig0024731:14599-14618 None:intergenic 30.0%
CCTCATTTGTTTATTCTCTA+TGG + tig0024731:14596-14615 Msa1419840:intron 30.0%
GATAACGATTGATTAAGTGT+TGG + tig0024731:14639-14658 Msa1419840:intron 30.0%
! GTTATTCGTACATCTAAAAC+TGG + tig0024731:14691-14710 Msa1419840:intron 30.0%
ATCAACTGTTGTTCAGTTAA+AGG - tig0024731:14754-14773 None:intergenic 30.0%
TTTAACTGAACAACAGTTGA+TGG + tig0024731:14753-14772 Msa1419840:CDS 30.0%
TTAACTGAACAACAGTTGAT+GGG + tig0024731:14754-14773 Msa1419840:CDS 30.0%
GAAATAGACAGTTAATTACC+TGG - tig0024731:14978-14997 None:intergenic 30.0%
! TATCTCAACTTCCTTCTTTT+TGG + tig0024731:15000-15019 Msa1419840:intron 30.0%
GTTATTGAATGAAACTGTGT+CGG - tig0024731:15064-15083 None:intergenic 30.0%
TACAGACATAAACATGACAA+CGG - tig0024731:15120-15139 None:intergenic 30.0%
GAATTAATTGTGTACCTTAG+AGG + tig0024731:15194-15213 Msa1419840:intron 30.0%
! TCCTTTTCCTTCATGTTTAT+AGG + tig0024731:15339-15358 Msa1419840:intron 30.0%
TTATCAGCCTATAAACATGA+AGG - tig0024731:15349-15368 None:intergenic 30.0%
! CAATAAGTGATTATTTCTCC+CGG + tig0024731:15440-15459 Msa1419840:CDS 30.0%
TGTATGATAGATAGAGTTGA+AGG + tig0024731:15721-15740 Msa1419840:three_prime_UTR 30.0%
GTATGATAGATAGAGTTGAA+GGG + tig0024731:15722-15741 Msa1419840:three_prime_UTR 30.0%
TATGATAGATAGAGTTGAAG+GGG + tig0024731:15723-15742 Msa1419840:three_prime_UTR 30.0%
TCAGAAATCAAGCTTATTTG+AGG + tig0024731:15797-15816 Msa1419840:three_prime_UTR 30.0%
AAATCAAGCTTATTTGAGGA+TGG + tig0024731:15801-15820 Msa1419840:three_prime_UTR 30.0%
! TTCAACTTTGTCACTTGCTT+AGG + tig0024731:10686-10705 Msa1419840:five_prime_UTR 35.0%
! TCAACTTTGTCACTTGCTTA+GGG + tig0024731:10687-10706 Msa1419840:five_prime_UTR 35.0%
!! CATCTGTTGTTTCTTCTTTC+TGG + tig0024731:10732-10751 Msa1419840:five_prime_UTR 35.0%
!!! GCTTTGTTTTTACAACAAGG+TGG + tig0024731:10848-10867 Msa1419840:intron 35.0%
ATTGGCAACAAAATAGGTGT+CGG - tig0024731:11003-11022 None:intergenic 35.0%
CAAACCTTAAATCCACAACT+AGG - tig0024731:11207-11226 None:intergenic 35.0%
! AGTTGTGGATTTAAGGTTTG+TGG + tig0024731:11207-11226 Msa1419840:five_prime_UTR 35.0%
GACACTAACAAGGTTGTTAA+CGG + tig0024731:11287-11306 Msa1419840:CDS 35.0%
ACACTAACAAGGTTGTTAAC+GGG + tig0024731:11288-11307 Msa1419840:CDS 35.0%
TTATTGTAGGTGCCTTTAGA+TGG + tig0024731:11436-11455 Msa1419840:intron 35.0%
GAATTGAAGTTAGGGTCTAT+TGG + tig0024731:11541-11560 Msa1419840:intron 35.0%
CTTGATATTGGAGAGAATTG+CGG + tig0024731:11688-11707 Msa1419840:intron 35.0%
CATGAAAAAAATTGATGCCG+TGG + tig0024731:11741-11760 Msa1419840:intron 35.0%
!!! CCCTTTTTAGCTTTGAAACA+TGG + tig0024731:12036-12055 Msa1419840:intron 35.0%
! GTCATGATTTTGGATTTCAG+GGG + tig0024731:12128-12147 Msa1419840:intron 35.0%
CCAAAATCAGAAATTCGAGA+AGG - tig0024731:12176-12195 None:intergenic 35.0%
! CCTTCTCGAATTTCTGATTT+TGG + tig0024731:12173-12192 Msa1419840:CDS 35.0%
GAAATCCTAGAGATTGTTCA+AGG - tig0024731:12202-12221 None:intergenic 35.0%
CATACTTCTGCTAAGATTCA+TGG - tig0024731:12237-12256 None:intergenic 35.0%
! CTTAGCAGAAGTATGTCATT+TGG + tig0024731:12242-12261 Msa1419840:intron 35.0%
AGTATAAGCACTAAGAACAC+AGG - tig0024731:12542-12561 None:intergenic 35.0%
AGGTTAATCGAGGATTCATA+AGG - tig0024731:12719-12738 None:intergenic 35.0%
AAAGCAAATAGCCAAGCTTT+AGG + tig0024731:12783-12802 Msa1419840:CDS 35.0%
TCTTCACTTGCATGTATGTA+CGG + tig0024731:12902-12921 Msa1419840:intron 35.0%
GTTTATATCCGAGTTTGCAA+TGG - tig0024731:12934-12953 None:intergenic 35.0%
CATACGGTTTATTCTGAATC+TGG + tig0024731:13138-13157 Msa1419840:intron 35.0%
!!! TTTTTGTTTTGCAGCCTGAA+AGG + tig0024731:13226-13245 Msa1419840:intron 35.0%
!!! TTTTGTTTTGCAGCCTGAAA+GGG + tig0024731:13227-13246 Msa1419840:intron 35.0%
! CTTTTGTTCAGACGTTAAGA+CGG + tig0024731:13352-13371 Msa1419840:intron 35.0%
AAATAGCAAAACAAACCTGC+TGG - tig0024731:13598-13617 None:intergenic 35.0%
ACCATTTCCACTCATTGAAT+GGG - tig0024731:13755-13774 None:intergenic 35.0%
TACCATTTCCACTCATTGAA+TGG - tig0024731:13756-13775 None:intergenic 35.0%
GAAAAATTCCTCCAAGTAGA+AGG - tig0024731:13843-13862 None:intergenic 35.0%
TTTGTCAAGCCAAGAGTTAA+TGG - tig0024731:13925-13944 None:intergenic 35.0%
GAAAATAGTAGTCTGTAGCA+TGG + tig0024731:14222-14241 Msa1419840:intron 35.0%
! GATGGTTAGAAGAGCATAAT+AGG + tig0024731:14344-14363 Msa1419840:CDS 35.0%
ATAGGCAAACCAATGAACTA+AGG + tig0024731:14362-14381 Msa1419840:CDS 35.0%
TAGGCAAACCAATGAACTAA+GGG + tig0024731:14363-14382 Msa1419840:CDS 35.0%
CTGCAATAAATTCTCATGCT+GGG + tig0024731:14386-14405 Msa1419840:CDS 35.0%
TGCAATAAATTCTCATGCTG+GGG + tig0024731:14387-14406 Msa1419840:CDS 35.0%
TGAAATTGTCGACAATGGTA+CGG - tig0024731:14423-14442 None:intergenic 35.0%
AGTCATGAAATTGTCGACAA+TGG - tig0024731:14428-14447 None:intergenic 35.0%
! GATGTTTTCCACATTCTATC+AGG + tig0024731:14493-14512 Msa1419840:CDS 35.0%
ACATAAACATGACAACGGAA+TGG - tig0024731:15115-15134 None:intergenic 35.0%
GCCTATAAACATGAAGGAAA+AGG - tig0024731:15343-15362 None:intergenic 35.0%
AAACGTTGCAACAAATGCTT+CGG + tig0024731:15380-15399 Msa1419840:CDS 35.0%
! TTTGAAACAGTTTACTCCCT+TGG - tig0024731:15499-15518 None:intergenic 35.0%
ATGATAGATAGAGTTGAAGG+GGG + tig0024731:15724-15743 Msa1419840:three_prime_UTR 35.0%
! TGGTTTCTTTTCCTGCTTAA+TGG + tig0024731:15836-15855 Msa1419840:three_prime_UTR 35.0%
! TTTTCCTGCTTAATGGTTTG+TGG + tig0024731:15843-15862 Msa1419840:three_prime_UTR 35.0%
!! TTTGTTTCTAGGCGGTTGTA+CGG + tig0024731:10952-10971 Msa1419840:intron 40.0%
AAGGCCTAGTTGTGGATTTA+AGG + tig0024731:11200-11219 Msa1419840:intron 40.0%
GGTCCTCAGACAAATTTACA+TGG - tig0024731:11345-11364 None:intergenic 40.0%
GGGGATACTTACCTTGATAT+TGG + tig0024731:11676-11695 Msa1419840:intron 40.0%
CGCAATTCTCTCCAATATCA+AGG - tig0024731:11690-11709 None:intergenic 40.0%
GAAAAAAATTGATGCCGTGG+TGG + tig0024731:11744-11763 Msa1419840:intron 40.0%
TAGATCTTGAGCATCCATGT+TGG + tig0024731:12012-12031 Msa1419840:intron 40.0%
AAGCTAAAAAGGGTCCAACA+TGG - tig0024731:12029-12048 None:intergenic 40.0%
!! ATCTCTAGGATTTCGTGTTG+AGG + tig0024731:12208-12227 Msa1419840:CDS 40.0%
GAATATCAGCACCTAAAGCT+TGG - tig0024731:12797-12816 None:intergenic 40.0%
! ACATGCAAGTGAAGAGTGTA+AGG - tig0024731:12897-12916 None:intergenic 40.0%
CCAGATGTTGAAGCCAAATT+TGG - tig0024731:13011-13030 None:intergenic 40.0%
! CCAAATTTGGCTTCAACATC+TGG + tig0024731:13008-13027 Msa1419840:CDS 40.0%
! AATTTGGCTTCAACATCTGG+CGG + tig0024731:13011-13030 Msa1419840:CDS 40.0%
!!! TTTGTTTTGCAGCCTGAAAG+GGG + tig0024731:13228-13247 Msa1419840:intron 40.0%
TGTTTCTTCTGCATGCAATC+TGG + tig0024731:13464-13483 Msa1419840:intron 40.0%
TGCACATATGCCTGAATGAA+TGG - tig0024731:13515-13534 None:intergenic 40.0%
ACCCATTCAATGAGTGGAAA+TGG + tig0024731:13751-13770 Msa1419840:CDS 40.0%
ACATATCACGGCAAATGTCA+TGG - tig0024731:13952-13971 None:intergenic 40.0%
ATAGTAGTCTGTAGCATGGA+TGG + tig0024731:14226-14245 Msa1419840:intron 40.0%
TATTGCAGCCCTTAGTTCAT+TGG - tig0024731:14374-14393 None:intergenic 40.0%
GCTGCAATAAATTCTCATGC+TGG + tig0024731:14385-14404 Msa1419840:CDS 40.0%
GAAGATATCTACAGGCTGAA+AGG + tig0024731:14454-14473 Msa1419840:CDS 40.0%
TCCACATTCTATCAGGAATG+TGG + tig0024731:14500-14519 Msa1419840:CDS 40.0%
TCCACATTCCTGATAGAATG+TGG - tig0024731:14504-14523 None:intergenic 40.0%
TCGGTCATCTGAACTTCTTA+AGG + tig0024731:14564-14583 Msa1419840:CDS 40.0%
GCAGCTTCTTGTAAGTCATT+TGG + tig0024731:14726-14745 Msa1419840:intron 40.0%
TGAACCATTAGCCAATGTCT+CGG - tig0024731:14860-14879 None:intergenic 40.0%
TGGAAATGTGGCCAATTACA+TGG + tig0024731:14900-14919 Msa1419840:CDS 40.0%
GGAAATGTGGCCAATTACAT+GGG + tig0024731:14901-14920 Msa1419840:CDS 40.0%
AGCCATTTGTCCCATGTAAT+TGG - tig0024731:14914-14933 None:intergenic 40.0%
TTACATGGGACAAATGGCTA+TGG + tig0024731:14915-14934 Msa1419840:CDS 40.0%
! CTCAACTTCCTTCTTTTTGG+AGG + tig0024731:15003-15022 Msa1419840:intron 40.0%
GGATACACGGTATACAACAA+CGG - tig0024731:15094-15113 None:intergenic 40.0%
ATGACAACGGAATGGATACA+CGG - tig0024731:15107-15126 None:intergenic 40.0%
GTTTATAGGCTGATAACCTG+AGG + tig0024731:15353-15372 Msa1419840:intron 40.0%
ATGTTCTTTCTGCATGAAGC+TGG + tig0024731:15528-15547 Msa1419840:three_prime_UTR 40.0%
TGTTTACAAGCACCACAACT+AGG - tig0024731:15589-15608 None:intergenic 40.0%
AGGAAAAGAAACCAAGAGAG+AGG - tig0024731:15830-15849 None:intergenic 40.0%
CAAGAGACATATCAACTGAC+TGG - tig0024731:15931-15950 None:intergenic 40.0%
TGTGTTTCAAGGCCTAGTTG+TGG + tig0024731:11192-11211 Msa1419840:intron 45.0%
! TGGTTATTGATGGGCAGTAG+AGG + tig0024731:11251-11270 Msa1419840:exon 45.0%
AACTGCTGAGGACACTAACA+AGG + tig0024731:11277-11296 Msa1419840:CDS 45.0%
! TTAGGGTCTATTGGTTGCAG+AGG + tig0024731:11550-11569 Msa1419840:intron 45.0%
ACTGACAATTCGAGTCAGCA+AGG - tig0024731:11858-11877 None:intergenic 45.0%
! GATTTTGGATTTCAGGGGCA+TGG + tig0024731:12133-12152 Msa1419840:intron 45.0%
AATAGTTGTTCCCCTCTCGA+TGG + tig0024731:12691-12710 Msa1419840:intron 45.0%
TTCATAAGGCTCCATCGAGA+GGG - tig0024731:12705-12724 None:intergenic 45.0%
ATTCATAAGGCTCCATCGAG+AGG - tig0024731:12706-12725 None:intergenic 45.0%
GGTACAGTCCATTGCAAACT+CGG + tig0024731:12923-12942 Msa1419840:intron 45.0%
AAAAGACGCGCTGCCAAATT+TGG + tig0024731:12995-13014 Msa1419840:CDS 45.0%
!! TTGTTTTGCAGCCTGAAAGG+GGG + tig0024731:13229-13248 Msa1419840:intron 45.0%
GAAAAGCCGACTGAGGAAAA+AGG + tig0024731:13401-13420 Msa1419840:CDS 45.0%
! GCTGTACCTTTTTCCTCAGT+CGG - tig0024731:13410-13429 None:intergenic 45.0%
TGCAACAATTAGAGAGCAGC+AGG + tig0024731:13531-13550 Msa1419840:CDS 45.0%
CTGTAGCTCTTGCTCTAGTT+GGG - tig0024731:13567-13586 None:intergenic 45.0%
TCAAGCTTGCGTCACACAAT+TGG - tig0024731:13797-13816 None:intergenic 45.0%
GCATCAAAGTCCCTTCTACT+TGG + tig0024731:13829-13848 Msa1419840:intron 45.0%
TCAAAGTCCCTTCTACTTGG+AGG + tig0024731:13832-13851 Msa1419840:intron 45.0%
!!! TGTTGACGTTTTTGGTGTGC+AGG + tig0024731:14292-14311 Msa1419840:intron 45.0%
!! TTTTTGGTGTGCAGGTGCAA+TGG + tig0024731:14300-14319 Msa1419840:intron 45.0%
TTGATGCAGAATACGCACGA+TGG + tig0024731:14326-14345 Msa1419840:CDS 45.0%
!! GAGAGGTGTTTCATGTGGAT+TGG + tig0024731:14535-14554 Msa1419840:CDS 45.0%
!! AGGTGTTTCATGTGGATTGG+AGG + tig0024731:14538-14557 Msa1419840:CDS 45.0%
!! TCATGTGGATTGGAGGCTTT+CGG + tig0024731:14545-14564 Msa1419840:CDS 45.0%
GCAATCACTTTCCGAGACAT+TGG + tig0024731:14846-14865 Msa1419840:CDS 45.0%
! CTTTCCGAGACATTGGCTAA+TGG + tig0024731:14853-14872 Msa1419840:CDS 45.0%
!! CATTTCCAGAAGCACCTGAT+GGG - tig0024731:14888-14907 None:intergenic 45.0%
!! ACATTTCCAGAAGCACCTGA+TGG - tig0024731:14889-14908 None:intergenic 45.0%
! ATCAGGTGCTTCTGGAAATG+TGG + tig0024731:14888-14907 Msa1419840:CDS 45.0%
GGCCAATTACATGGGACAAA+TGG + tig0024731:14909-14928 Msa1419840:CDS 45.0%
!! AAGAGTACCAAGCTTTCCCA+TGG - tig0024731:14941-14960 None:intergenic 45.0%
GGAAAGCTTGGTACTCTTGA+GGG + tig0024731:14943-14962 Msa1419840:CDS 45.0%
GTAATGCATCTCACCCTCTA+AGG - tig0024731:15211-15230 None:intergenic 45.0%
! TGAGTTCTCTATGGCTTGCA+CGG + tig0024731:15473-15492 Msa1419840:CDS 45.0%
! TGCATGAAGCTGGTGTCTTT+TGG + tig0024731:15538-15557 Msa1419840:three_prime_UTR 45.0%
GTTGTGAAGAAGCCTAGTTG+TGG + tig0024731:15574-15593 Msa1419840:three_prime_UTR 45.0%
TATTCTCCTCCACATACTGC+TGG + tig0024731:15628-15647 Msa1419840:three_prime_UTR 45.0%
GCAACCACAAACCATTAAGC+AGG - tig0024731:15850-15869 None:intergenic 45.0%
CAGTAGAGGTAGAACTGCTG+AGG + tig0024731:11265-11284 Msa1419840:CDS 50.0%
! TTAGATGGAGGTGCGTAGCT+CGG - tig0024731:11317-11336 None:intergenic 50.0%
! TGGTTGCAGAGGAAAGTGTG+TGG + tig0024731:11561-11580 Msa1419840:intron 50.0%
! TTGCAGAGGAAAGTGTGTGG+TGG + tig0024731:11564-11583 Msa1419840:intron 50.0%
! TTTGGATTTCAGGGGCATGG+AGG + tig0024731:12136-12155 Msa1419840:intron 50.0%
! TTGGATTTCAGGGGCATGGA+GGG + tig0024731:12137-12156 Msa1419840:intron 50.0%
GGAGCCCTTGAACAATCTCT+AGG + tig0024731:12194-12213 Msa1419840:CDS 50.0%
GAAATGTTAACCAGTGCCCC+CGG + tig0024731:12334-12353 Msa1419840:intron 50.0%
AAATGTTAACCAGTGCCCCC+GGG + tig0024731:12335-12354 Msa1419840:intron 50.0%
TAACTCCTTAACCAGTGCCC+CGG - tig0024731:12356-12375 None:intergenic 50.0%
TCATAAGGCTCCATCGAGAG+GGG - tig0024731:12704-12723 None:intergenic 50.0%
AACCTCTCTGCTGCAATTGC+TGG + tig0024731:12951-12970 Msa1419840:CDS 50.0%
ACCTCTCTGCTGCAATTGCT+GGG + tig0024731:12952-12971 Msa1419840:CDS 50.0%
ACTCTCCCCAATTCTCACGA+TGG - tig0024731:13037-13056 None:intergenic 50.0%
GAATTGGGGAGAGTCCAACA+TGG + tig0024731:13043-13062 Msa1419840:CDS 50.0%
! TGTTTTGCAGCCTGAAAGGG+GGG + tig0024731:13230-13249 Msa1419840:intron 50.0%
TGTTCAGACGTTAAGACGGC+TGG + tig0024731:13356-13375 Msa1419840:intron 50.0%
CTCAAAATCGTGAAGCTGCC+AGG + tig0024731:13379-13398 Msa1419840:CDS 50.0%
!! TTTCCTCAGTCGGCTTTTCC+TGG - tig0024731:13400-13419 None:intergenic 50.0%
GCTGTAGCTCTTGCTCTAGT+TGG - tig0024731:13568-13587 None:intergenic 50.0%
GAGCAGACCCATTCAATGAG+TGG + tig0024731:13745-13764 Msa1419840:CDS 50.0%
AGCTTGCGTCACACAATTGG+AGG - tig0024731:13794-13813 None:intergenic 50.0%
CACATGAAACACCTCTCAGC+TGG - tig0024731:14532-14551 None:intergenic 50.0%
!! CAGCTGAGAGGTGTTTCATG+TGG + tig0024731:14530-14549 Msa1419840:CDS 50.0%
AGACGCTCTTTCCCAAGGAA+TGG + tig0024731:14813-14832 Msa1419840:CDS 50.0%
CTGCAATGCGTCCATTCCTT+GGG - tig0024731:14827-14846 None:intergenic 50.0%
AATGGTTCACCCAACCCATC+AGG + tig0024731:14871-14890 Msa1419840:CDS 50.0%
GGACAAATGGCTATGGCCAT+GGG + tig0024731:14922-14941 Msa1419840:CDS 50.0%
GGGAAAGCTTGGTACTCTTG+AGG + tig0024731:14942-14961 Msa1419840:CDS 50.0%
TCTTGAGGGATTTCTTCGCC+AGG + tig0024731:14957-14976 Msa1419840:CDS 50.0%
!! CTTCTTTTTGGAGGCGTGTC+CGG + tig0024731:15012-15031 Msa1419840:intron 50.0%
CACTCACACATGTCGAACAC+CGG - tig0024731:15034-15053 None:intergenic 50.0%
AAGAGCTCGAGCTGATTGTC+TGG - tig0024731:15416-15435 None:intergenic 50.0%
!! TGCGAGCTCTGAGTTCTCTA+TGG + tig0024731:15464-15483 Msa1419840:CDS 50.0%
TGTACCACACCAGCAGTATG+TGG - tig0024731:15640-15659 None:intergenic 50.0%
GAGGATGGTTTCCTCTCTCT+TGG + tig0024731:15816-15835 Msa1419840:three_prime_UTR 50.0%
TGCCGTGGTGGCACAAATCA+CGG + tig0024731:11756-11775 Msa1419840:intron 55.0%
! GACCGTGATTTGTGCCACCA+CGG - tig0024731:11761-11780 None:intergenic 55.0%
AATGTTAACCAGTGCCCCCG+GGG + tig0024731:12336-12355 Msa1419840:intron 55.0%
AACTCCTTAACCAGTGCCCC+GGG - tig0024731:12355-12374 None:intergenic 55.0%
ACCCAGCAATTGCAGCAGAG+AGG - tig0024731:12956-12975 None:intergenic 55.0%
TGGCGGCCATCGTGAGAATT+GGG + tig0024731:13028-13047 Msa1419840:CDS 55.0%
GGAGAGTCCAACATGGCTGA+GGG + tig0024731:13050-13069 Msa1419840:CDS 55.0%
TCACTGGATTCCCCCCTTTC+AGG - tig0024731:13243-13262 None:intergenic 55.0%
TGTGGAAGACTCCAGCTGAG+AGG + tig0024731:14518-14537 Msa1419840:CDS 55.0%
GCTGAAGACGCTCTTTCCCA+AGG + tig0024731:14808-14827 Msa1419840:CDS 55.0%
GCTGCAATGCGTCCATTCCT+TGG - tig0024731:14828-14847 None:intergenic 55.0%
!! CCAGAAGCACCTGATGGGTT+GGG - tig0024731:14883-14902 None:intergenic 55.0%
!! TCCAGAAGCACCTGATGGGT+TGG - tig0024731:14884-14903 None:intergenic 55.0%
GGGACAAATGGCTATGGCCA+TGG + tig0024731:14921-14940 Msa1419840:CDS 55.0%
GCTATGGCCATGGGAAAGCT+TGG + tig0024731:14931-14950 Msa1419840:CDS 55.0%
CGGACACGCCTCCAAAAAGA+AGG - tig0024731:15014-15033 None:intergenic 55.0%
! GTTGCAACGTTTGCTGCCTC+AGG - tig0024731:15372-15391 None:intergenic 55.0%
! TCTATGGCTTGCACGGCCAA+GGG + tig0024731:15480-15499 Msa1419840:CDS 55.0%
TCCTCCACATACTGCTGGTG+TGG + tig0024731:15633-15652 Msa1419840:three_prime_UTR 55.0%
ACCACACCAGCAGTATGTGG+AGG - tig0024731:15637-15656 None:intergenic 55.0%
ACTCCTTAACCAGTGCCCCG+GGG - tig0024731:12354-12373 None:intergenic 60.0%
CTGGCGGCCATCGTGAGAAT+TGG + tig0024731:13027-13046 Msa1419840:CDS 60.0%
GGCGGCCATCGTGAGAATTG+GGG + tig0024731:13029-13048 Msa1419840:CDS 60.0%
GGGAGAGTCCAACATGGCTG+AGG + tig0024731:13049-13068 Msa1419840:CDS 60.0%
AGCGCTTCCCTCAGCCATGT+TGG - tig0024731:13060-13079 None:intergenic 60.0%
CTGCCAGGAAAAGCCGACTG+AGG + tig0024731:13394-13413 Msa1419840:CDS 60.0%
CCCAACCCATCAGGTGCTTC+TGG + tig0024731:14880-14899 Msa1419840:CDS 60.0%
AGAACTCAGAGCTCGCAGCC+GGG - tig0024731:15461-15480 None:intergenic 60.0%
GAGAACTCAGAGCTCGCAGC+CGG - tig0024731:15462-15481 None:intergenic 60.0%
! CTCTATGGCTTGCACGGCCA+AGG + tig0024731:15479-15498 Msa1419840:CDS 60.0%
CTCCTTAACCAGTGCCCCGG+GGG - tig0024731:12353-12372 None:intergenic 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + tig0024731:12348-12367 Msa1419840:intron 70.0%
GCTACAGCGAGCACGCCAGC+AGG + tig0024731:13580-13599 Msa1419840:CDS 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + tig0024731:12342-12361 Msa1419840:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - tig0024731:12347-12366 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024731 gene 10655 16134 10655 ID=Msa1419840;Name=Msa1419840
tig0024731 mRNA 10655 16134 10655 ID=Msa1419840-mRNA-1;Parent=Msa1419840;Name=Msa1419840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=157|1|1|1|0.90|0.83|12|627|453
tig0024731 exon 10655 10754 10655 ID=Msa1419840-mRNA-1:exon:1083;Parent=Msa1419840-mRNA-1
tig0024731 exon 11203 11345 11203 ID=Msa1419840-mRNA-1:exon:1084;Parent=Msa1419840-mRNA-1
tig0024731 exon 12148 12251 12148 ID=Msa1419840-mRNA-1:exon:1085;Parent=Msa1419840-mRNA-1
tig0024731 exon 12763 12836 12763 ID=Msa1419840-mRNA-1:exon:1086;Parent=Msa1419840-mRNA-1
tig0024731 exon 12930 13118 12930 ID=Msa1419840-mRNA-1:exon:1087;Parent=Msa1419840-mRNA-1
tig0024731 exon 13240 13290 13240 ID=Msa1419840-mRNA-1:exon:1088;Parent=Msa1419840-mRNA-1
tig0024731 exon 13363 13422 13363 ID=Msa1419840-mRNA-1:exon:1089;Parent=Msa1419840-mRNA-1
tig0024731 exon 13524 13601 13524 ID=Msa1419840-mRNA-1:exon:1090;Parent=Msa1419840-mRNA-1
tig0024731 exon 13721 13772 13721 ID=Msa1419840-mRNA-1:exon:1091;Parent=Msa1419840-mRNA-1
tig0024731 exon 14314 14585 14314 ID=Msa1419840-mRNA-1:exon:1092;Parent=Msa1419840-mRNA-1
tig0024731 exon 14730 14978 14730 ID=Msa1419840-mRNA-1:exon:1093;Parent=Msa1419840-mRNA-1
tig0024731 exon 15361 16134 15361 ID=Msa1419840-mRNA-1:exon:1094;Parent=Msa1419840-mRNA-1
tig0024731 five_prime_UTR 10655 10754 10655 ID=Msa1419840-mRNA-1:five_prime_utr;Parent=Msa1419840-mRNA-1
tig0024731 five_prime_UTR 11203 11259 11203 ID=Msa1419840-mRNA-1:five_prime_utr;Parent=Msa1419840-mRNA-1
tig0024731 CDS 11260 11345 11260 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 12148 12251 12148 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 12763 12836 12763 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 12930 13118 12930 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 13240 13290 13240 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 13363 13422 13363 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 13524 13601 13524 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 13721 13772 13721 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 14314 14585 14314 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 14730 14978 14730 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 CDS 15361 15507 15361 ID=Msa1419840-mRNA-1:cds;Parent=Msa1419840-mRNA-1
tig0024731 three_prime_UTR 15508 16134 15508 ID=Msa1419840-mRNA-1:three_prime_utr;Parent=Msa1419840-mRNA-1
Gene Sequence

>Msa1419840

ATGGGCAGTAGAGGTAGAACTGCTGAGGACACTAACAAGGTTGTTAACGGGATGCCGAGCTACGCACCTCCATCTAATAATTCCATGGGCATGGAGGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTTGAGGATGCCATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTTTAAGTAAGTCCATTGCAAACTCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCTCAGACATTGCAATTACAAAAAGACGCGCTGCCAAATTTGGCTTCAACATCTGGCGGCCATCGTGAGAATTGGGGAGAGTCCAACATGGCTGAGGGAAGCGCTGATACTTCAACAGATGATACAGAAGACAAGAATCAAATGCCTGAAAGGGGGGAATCCAGTGAAAGATCAAAAGACAAATCGGATCAAAAGACGTTAAGACGGCTGGCTCAAAATCGTGAAGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGCAGGCTGAAACTAACCCAACTAGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGAATATTTATTTCAAGTACTGGAGAGCAGACCCATTCAATGAGTGGAAATGGTGCAATGGCATTTGATGCAGAATACGCACGATGGTTAGAAGAGCATAATAGGCAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCTGGGGATATTGAACTCCGTACCATTGTCGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCTGAACTTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACTGAACAACAGTTGATGGGTATCTACAACTTGCAACAGTCATCTCAACAAGCTGAAGACGCTCTTTCCCAAGGAATGGACGCATTGCAGCAATCACTTTCCGAGACATTGGCTAATGGTTCACCCAACCCATCAGGTGCTTCTGGAAATGTGGCCAATTACATGGGACAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGATTTCTTCGCCAGGCTGATAACCTGAGGCAGCAAACGTTGCAACAAATGCTTCGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCTCTGAGTTCTCTATGGCTTGCACGGCCAAGGGAGTAA
Protein sequence

>Msa1419840

MGSRGRTAEDTNKVVNGMPSYAPPSNNSMGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDALPNLASTSGGHRENWGESNMAEGSADTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGASGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE*