Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031090 | GAU10875.1 | 71.338 | 157 | 45 | 0 | 2 | 158 | 1 | 157 | 1.06e-73 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031090 | sp|Q9T096|YIPL6_ARATH | 66.216 | 74 | 25 | 0 | 185 | 258 | 32 | 105 | 1.43e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031050 | Msa0031090 | 0.903691 | 2.670773e-79 | -8.615850e-47 |
| Msa0031090 | Msa0078430 | 0.904753 | 8.821748e-80 | -8.615850e-47 |
| Msa0031090 | Msa0171020 | 0.850477 | 1.656263e-60 | -8.615850e-47 |
| Msa0031090 | Msa0555950 | 0.803579 | 3.259129e-49 | -8.615850e-47 |
| Msa0031090 | Msa0610370 | 0.819675 | 1.025247e-52 | -8.615850e-47 |
| Msa0031090 | Msa0618290 | 0.803440 | 3.482761e-49 | -8.615850e-47 |
| Msa0031090 | Msa0628640 | 0.807002 | 6.252266e-50 | -8.615850e-47 |
| Msa0031090 | Msa0631120 | 0.808423 | 3.120492e-50 | -8.615850e-47 |
| Msa0031090 | Msa1282920 | 0.802742 | 4.856337e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031090 | MtrunA17_Chr2g0296731 | 62.032 | 187 | 41 | 2 | 1 | 160 | 56 | 239 | 4.46e-69 | 221 |
| Msa0031090 | MtrunA17_Chr8g0363541 | 53.110 | 209 | 47 | 1 | 1 | 158 | 11 | 219 | 1.79e-65 | 206 |
| Msa0031090 | MtrunA17_Chr3g0131371 | 54.419 | 215 | 41 | 3 | 1 | 161 | 1 | 212 | 4.72e-64 | 208 |
| Msa0031090 | MtrunA17_Chr8g0359381 | 51.174 | 213 | 50 | 4 | 1 | 159 | 466 | 678 | 1.27e-52 | 183 |
| Msa0031090 | MtrunA17_Chr5g0431011 | 50.235 | 213 | 52 | 4 | 1 | 159 | 118 | 330 | 1.44e-51 | 177 |
| Msa0031090 | MtrunA17_Chr5g0430691 | 73.148 | 108 | 29 | 0 | 1 | 108 | 56 | 163 | 6.34e-51 | 170 |
| Msa0031090 | MtrunA17_Chr4g0020731 | 54.118 | 170 | 59 | 1 | 1 | 151 | 347 | 516 | 1.05e-50 | 176 |
| Msa0031090 | MtrunA17_Chr4g0002791 | 78.846 | 104 | 22 | 0 | 1 | 104 | 56 | 159 | 3.26e-50 | 171 |
| Msa0031090 | MtrunA17_Chr1g0188931 | 97.333 | 75 | 2 | 0 | 185 | 259 | 32 | 106 | 3.37e-49 | 157 |
| Msa0031090 | MtrunA17_Chr3g0085661 | 69.919 | 123 | 31 | 2 | 1 | 118 | 118 | 239 | 2.31e-47 | 164 |
| Msa0031090 | MtrunA17_Chr6g0488181 | 46.500 | 200 | 90 | 3 | 1 | 194 | 11 | 199 | 3.00e-46 | 153 |
| Msa0031090 | MtrunA17_Chr6g0479961 | 67.308 | 104 | 34 | 0 | 1 | 104 | 11 | 114 | 9.80e-45 | 147 |
| Msa0031090 | MtrunA17_Chr4g0031641 | 70.103 | 97 | 29 | 0 | 12 | 108 | 1 | 97 | 8.35e-42 | 145 |
| Msa0031090 | MtrunA17_Chr4g0023831 | 39.286 | 224 | 78 | 3 | 1 | 170 | 1235 | 1454 | 2.91e-40 | 148 |
| Msa0031090 | MtrunA17_Chr6g0469141 | 64.583 | 96 | 34 | 0 | 1 | 96 | 140 | 235 | 5.95e-37 | 131 |
| Msa0031090 | MtrunA17_Chr6g0452011 | 63.107 | 103 | 38 | 0 | 1 | 103 | 348 | 450 | 1.58e-36 | 134 |
| Msa0031090 | MtrunA17_Chr3g0127211 | 74.324 | 74 | 19 | 0 | 185 | 258 | 32 | 105 | 1.57e-35 | 122 |
| Msa0031090 | MtrunA17_Chr4g0019431 | 64.516 | 93 | 33 | 0 | 59 | 151 | 3 | 95 | 2.24e-33 | 125 |
| Msa0031090 | MtrunA17_Chr8g0346501 | 69.565 | 69 | 21 | 0 | 187 | 255 | 34 | 102 | 1.61e-30 | 109 |
| Msa0031090 | MtrunA17_Chr8g0341191 | 50.427 | 117 | 58 | 0 | 2 | 118 | 324 | 440 | 5.14e-29 | 115 |
| Msa0031090 | MtrunA17_Chr3g0085761 | 44.371 | 151 | 49 | 1 | 1 | 151 | 522 | 637 | 3.78e-28 | 112 |
| Msa0031090 | MtrunA17_Chr5g0411291 | 41.880 | 117 | 68 | 0 | 2 | 118 | 272 | 388 | 1.29e-27 | 111 |
| Msa0031090 | MtrunA17_Chr4g0075191 | 41.525 | 118 | 69 | 0 | 1 | 118 | 294 | 411 | 7.78e-27 | 108 |
| Msa0031090 | MtrunA17_Chr1g0188951 | 65.079 | 63 | 22 | 0 | 197 | 259 | 1 | 63 | 1.58e-26 | 98.2 |
| Msa0031090 | MtrunA17_Chr8g0392081 | 40.171 | 117 | 70 | 0 | 2 | 118 | 56 | 172 | 1.87e-25 | 103 |
| Msa0031090 | MtrunA17_Chr4g0058441 | 43.137 | 102 | 58 | 0 | 2 | 103 | 9 | 110 | 3.06e-25 | 103 |
| Msa0031090 | MtrunA17_Chr2g0316921 | 47.222 | 72 | 38 | 0 | 186 | 257 | 37 | 108 | 1.12e-21 | 87.4 |
| Msa0031090 | MtrunA17_Chr8g0360291 | 47.143 | 70 | 37 | 0 | 188 | 257 | 39 | 108 | 1.12e-20 | 85.1 |
| Msa0031090 | MtrunA17_Chr4g0046851 | 45.714 | 70 | 38 | 0 | 188 | 257 | 39 | 108 | 2.19e-19 | 81.6 |
| Msa0031090 | MtrunA17_Chr5g0436971 | 47.826 | 69 | 36 | 0 | 186 | 254 | 37 | 105 | 3.61e-19 | 80.9 |
| Msa0031090 | MtrunA17_Chr3g0113291 | 46.377 | 69 | 37 | 0 | 186 | 254 | 60 | 128 | 2.40e-18 | 79.3 |
| Msa0031090 | MtrunA17_Chr2g0316891 | 44.615 | 65 | 36 | 0 | 193 | 257 | 42 | 106 | 2.98e-18 | 78.6 |
| Msa0031090 | MtrunA17_Chr7g0242231 | 47.143 | 70 | 37 | 0 | 186 | 255 | 37 | 106 | 6.83e-18 | 77.4 |
| Msa0031090 | MtrunA17_Chr2g0314641 | 58.000 | 50 | 21 | 0 | 104 | 153 | 10 | 59 | 2.96e-13 | 65.9 |
| Msa0031090 | MtrunA17_Chr4g0006871 | 34.653 | 101 | 66 | 0 | 2 | 102 | 717 | 817 | 4.09e-12 | 65.9 |
| Msa0031090 | MtrunA17_Chr7g0231291 | 79.487 | 39 | 8 | 0 | 66 | 104 | 324 | 362 | 1.17e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031090 | AT4G27745.2 | 66.216 | 74 | 25 | 0 | 185 | 258 | 32 | 105 | 1.45e-33 | 118 |
| Msa0031090 | AT4G27745.3 | 66.216 | 74 | 25 | 0 | 185 | 258 | 32 | 105 | 1.45e-33 | 118 |
| Msa0031090 | AT4G27745.1 | 66.216 | 74 | 25 | 0 | 185 | 258 | 32 | 105 | 1.45e-33 | 118 |
| Msa0031090 | AT4G27745.4 | 66.216 | 74 | 25 | 0 | 185 | 258 | 32 | 105 | 1.45e-33 | 118 |
| Msa0031090 | AT5G53940.1 | 45.833 | 72 | 39 | 0 | 186 | 257 | 37 | 108 | 5.38e-21 | 86.3 |
| Msa0031090 | AT4G27740.1 | 43.836 | 73 | 41 | 0 | 184 | 256 | 31 | 103 | 8.11e-20 | 82.4 |
| Msa0031090 | AT3G11230.1 | 49.275 | 69 | 35 | 0 | 186 | 254 | 37 | 105 | 3.42e-19 | 81.3 |
| Msa0031090 | AT3G11230.2 | 48.571 | 70 | 36 | 0 | 185 | 254 | 69 | 138 | 6.67e-19 | 81.6 |
| Msa0031090 | AT3G11230.4 | 49.254 | 67 | 34 | 0 | 185 | 251 | 36 | 102 | 1.09e-18 | 79.3 |
| Msa0031090 | AT3G11230.3 | 49.254 | 67 | 34 | 0 | 185 | 251 | 69 | 135 | 2.06e-18 | 79.7 |
| Msa0031090 | AT3G08990.2 | 45.714 | 70 | 38 | 0 | 186 | 255 | 37 | 106 | 2.38e-18 | 79.3 |
| Msa0031090 | AT3G08990.1 | 45.714 | 70 | 38 | 0 | 186 | 255 | 37 | 106 | 2.38e-18 | 79.3 |
| Msa0031090 | AT3G08990.3 | 45.714 | 70 | 38 | 0 | 186 | 255 | 37 | 106 | 2.38e-18 | 79.3 |
| Msa0031090 | AT3G55890.4 | 47.826 | 69 | 36 | 0 | 186 | 254 | 37 | 105 | 9.29e-18 | 77.4 |
| Msa0031090 | AT3G55890.1 | 47.826 | 69 | 36 | 0 | 186 | 254 | 37 | 105 | 9.29e-18 | 77.4 |
| Msa0031090 | AT2G40110.1 | 46.377 | 69 | 37 | 0 | 186 | 254 | 37 | 105 | 1.32e-17 | 77.4 |
| Msa0031090 | AT3G55890.3 | 47.692 | 65 | 34 | 0 | 186 | 250 | 37 | 101 | 2.13e-17 | 75.9 |
| Msa0031090 | AT3G55890.2 | 47.692 | 65 | 34 | 0 | 186 | 250 | 37 | 101 | 2.13e-17 | 75.9 |
| Msa0031090 | AT2G40110.2 | 45.455 | 66 | 36 | 0 | 186 | 251 | 37 | 102 | 1.19e-16 | 73.9 |
Find 90 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGCGTCGTTCATGTATT+TGG | 0.208236 | 1_1:-57662892 | Msa0031090:CDS |
| ATCCTAGGAGACTAGCTTTC+TGG | 0.212743 | 1_1:-57662851 | Msa0031090:CDS |
| CATGCAATGAATGTCATAAT+AGG | 0.240119 | 1_1:-57660151 | Msa0031090:CDS |
| CAAAGTCGATTTATTTCTTT+CGG | 0.240796 | 1_1:-57662786 | Msa0031090:CDS |
| TTGAGAAGTCTAAAATTGTT+AGG | 0.250834 | 1_1:-57659988 | Msa0031090:CDS |
| ATGAATTCCATGTCTACTTT+TGG | 0.252538 | 1_1:+57660127 | None:intergenic |
| TAGGGAGGGGTTGGAGAAGG+CGG | 0.288740 | 1_1:-57662386 | Msa0031090:CDS |
| GGATGGGCGGTTGGAGGTAG+GGG | 0.306348 | 1_1:-57662449 | Msa0031090:CDS |
| TGGTGGATAGAGGTGGGTTT+TGG | 0.314144 | 1_1:-57662504 | Msa0031090:CDS |
| TCCTTCTTCAAAGCTCCTTC+AGG | 0.316186 | 1_1:-57662708 | Msa0031090:intron |
| ATGGGAGGAATACTCTGTTT+TGG | 0.342410 | 1_1:-57662322 | Msa0031090:CDS |
| GGAGAGAGATAGCGAAGATT+AGG | 0.352522 | 1_1:-57662405 | Msa0031090:CDS |
| GGTTCCCAGACATGGTGTTT+AGG | 0.353086 | 1_1:-57662355 | Msa0031090:CDS |
| AAAGTCGATTTATTTCTTTC+GGG | 0.356910 | 1_1:-57662785 | Msa0031090:CDS |
| GAGAGAGATAGCGAAGATTA+GGG | 0.358015 | 1_1:-57662404 | Msa0031090:CDS |
| ATATAATTTCAGGGAAGAAA+TGG | 0.360217 | 1_1:-57660193 | Msa0031090:intron |
| ACCCTCCTAAACACCATGTC+TGG | 0.368599 | 1_1:+57662350 | None:intergenic |
| AGCGAAGATTAGGGAGGGGT+TGG | 0.368963 | 1_1:-57662395 | Msa0031090:CDS |
| AAGGCGTCGTTCATGTATTT+GGG | 0.382643 | 1_1:-57662891 | Msa0031090:CDS |
| AGGGAGGGGTTGGAGAAGGC+GGG | 0.385332 | 1_1:-57662385 | Msa0031090:CDS |
| TCTTTGTTCGCAGTGATGTC+TGG | 0.387421 | 1_1:-57663011 | None:intergenic |
| CGGATGGGCGGTTGGAGGTA+GGG | 0.390995 | 1_1:-57662450 | Msa0031090:CDS |
| TTTCATAAAAGTCTTCTAGT+TGG | 0.394979 | 1_1:-57662975 | Msa0031090:CDS |
| ACCCGACAGTCTAGATTTAA+CGG | 0.395480 | 1_1:+57662812 | None:intergenic |
| TGTTTAGGAGGGTTGGGAAT+GGG | 0.410381 | 1_1:-57662340 | Msa0031090:CDS |
| ATGCAATGAATGTCATAATA+GGG | 0.414182 | 1_1:-57660150 | Msa0031090:CDS |
| ACATGGTGTTTAGGAGGGTT+GGG | 0.418543 | 1_1:-57662346 | Msa0031090:CDS |
| GACATGGTGTTTAGGAGGGT+TGG | 0.420871 | 1_1:-57662347 | Msa0031090:CDS |
| TGAGAAGTCTAAAATTGTTA+GGG | 0.424108 | 1_1:-57659987 | Msa0031090:CDS |
| CTCTTCTGAATTGTAAAGTT+GGG | 0.425076 | 1_1:-57662914 | Msa0031090:CDS |
| TCTCTTCTGAATTGTAAAGT+TGG | 0.429325 | 1_1:-57662915 | Msa0031090:CDS |
| ATGTATTTGGGTCTGTCAAT+TGG | 0.433851 | 1_1:-57662879 | Msa0031090:CDS |
| GGAGGGGTTGGAGAAGGCGG+GGG | 0.439077 | 1_1:-57662383 | Msa0031090:CDS |
| AGTAAACATCAGCAATTGTA+TGG | 0.440083 | 1_1:+57660095 | None:intergenic |
| TCCTAGGAGACTAGCTTTCT+GGG | 0.442464 | 1_1:-57662850 | Msa0031090:CDS |
| GAAGTGGTGTTGGCGGATGT+TGG | 0.446194 | 1_1:-57662524 | Msa0031090:CDS |
| TCGGATGGGCGGTTGGAGGT+AGG | 0.455973 | 1_1:-57662451 | Msa0031090:CDS |
| GAATTAATATTACGAACTCT+TGG | 0.459465 | 1_1:-57662953 | Msa0031090:CDS |
| AGCTTTCTGGGAACCTGTGT+TGG | 0.471205 | 1_1:-57662838 | Msa0031090:CDS |
| TGTCAATTGGTGGTGATCCT+AGG | 0.475446 | 1_1:-57662866 | Msa0031090:CDS |
| GTGTTTAGGAGGGTTGGGAA+TGG | 0.475876 | 1_1:-57662341 | Msa0031090:CDS |
| GCCGGAGTGTTTCAAATTGG+TGG | 0.476573 | 1_1:-57662426 | Msa0031090:CDS |
| ACCGTTAAATCTAGACTGTC+GGG | 0.484316 | 1_1:-57662813 | Msa0031090:CDS |
| GGGAGGGGTTGGAGAAGGCG+GGG | 0.486679 | 1_1:-57662384 | Msa0031090:CDS |
| TCCCAGACATGGTGTTTAGG+AGG | 0.487765 | 1_1:-57662352 | Msa0031090:CDS |
| GATGGGCGGTTGGAGGTAGG+GGG | 0.487938 | 1_1:-57662448 | Msa0031090:CDS |
| AGATAGCGAAGATTAGGGAG+GGG | 0.488492 | 1_1:-57662399 | Msa0031090:CDS |
| CGAAAAGTCGGATGGGCGGT+TGG | 0.488573 | 1_1:-57662458 | Msa0031090:CDS |
| CGGATGTTGGTGGATAGAGG+TGG | 0.489455 | 1_1:-57662511 | Msa0031090:CDS |
| CCCAGACATGGTGTTTAGGA+GGG | 0.492366 | 1_1:-57662351 | Msa0031090:CDS |
| AAGAAGGAAAGCGCATAGAC+AGG | 0.497603 | 1_1:+57662723 | None:intergenic |
| GTGGTGTTGGCGGATGTTGG+TGG | 0.499334 | 1_1:-57662521 | Msa0031090:CDS |
| CGTTGTTAGGGAAGTGGTGT+TGG | 0.499544 | 1_1:-57662534 | Msa0031090:intron |
| GATTTAACGGTTTCCAACAC+AGG | 0.508912 | 1_1:+57662825 | None:intergenic |
| GGGGCCGGAGTGTTTCAAAT+TGG | 0.509712 | 1_1:-57662429 | Msa0031090:CDS |
| GAGATAGCGAAGATTAGGGA+GGG | 0.512771 | 1_1:-57662400 | Msa0031090:CDS |
| ATTGTGCGTTGTTAGGGAAG+TGG | 0.513478 | 1_1:-57662540 | Msa0031090:intron |
| TGTGACTGCAATCAAGTGCT+TGG | 0.515226 | 1_1:-57660070 | Msa0031090:CDS |
| TCCCAGAAAGCTAGTCTCCT+AGG | 0.516230 | 1_1:+57662849 | None:intergenic |
| TGGCGGATGTTGGTGGATAG+AGG | 0.516369 | 1_1:-57662514 | Msa0031090:CDS |
| ACCTGAAGGAGCTTTGAAGA+AGG | 0.517125 | 1_1:+57662707 | None:intergenic |
| GGGATGTTGGTTCCCAGACA+TGG | 0.527332 | 1_1:-57662363 | Msa0031090:CDS |
| CCCTCCTAAACACCATGTCT+GGG | 0.538787 | 1_1:+57662351 | None:intergenic |
| GATTAGGGAGGGGTTGGAGA+AGG | 0.541049 | 1_1:-57662389 | Msa0031090:CDS |
| ACTGCAATCAAGTGCTTGGT+TGG | 0.543372 | 1_1:-57660066 | Msa0031090:CDS |
| TTTCAGGGAAGAAATGGAAG+AGG | 0.547363 | 1_1:-57660187 | Msa0031090:intron |
| AACCGTTAAATCTAGACTGT+CGG | 0.547391 | 1_1:-57662814 | Msa0031090:CDS |
| GAAGTTTGAGAGAGTCTATG+AGG | 0.548405 | 1_1:-57660044 | Msa0031090:CDS |
| TTAGGAGGGTTGGGAATGGG+AGG | 0.549297 | 1_1:-57662337 | Msa0031090:CDS |
| AGAGATAGCGAAGATTAGGG+AGG | 0.553690 | 1_1:-57662401 | Msa0031090:CDS |
| AAGTCGATTTATTTCTTTCG+GGG | 0.554061 | 1_1:-57662784 | Msa0031090:CDS |
| TGTTAGGGAAGTGGTGTTGG+CGG | 0.555000 | 1_1:-57662531 | Msa0031090:intron |
| TATTTGGGTCTGTCAATTGG+TGG | 0.562901 | 1_1:-57662876 | Msa0031090:CDS |
| AAAGTCGGATGGGCGGTTGG+AGG | 0.566029 | 1_1:-57662455 | Msa0031090:CDS |
| AACATCACCAACCCACCTAT+CGG | 0.571775 | 1_1:+57662298 | None:intergenic |
| GGATGTTGGTGGATAGAGGT+GGG | 0.574200 | 1_1:-57662510 | Msa0031090:CDS |
| TCTGAATTGTAAAGTTGGGA+AGG | 0.587954 | 1_1:-57662910 | Msa0031090:CDS |
| GTGAGGTACGAAAAGTCGGA+TGG | 0.590283 | 1_1:-57662466 | Msa0031090:CDS |
| AGTGGTGAGGTACGAAAAGT+CGG | 0.593618 | 1_1:-57662470 | Msa0031090:CDS |
| AATAGGGCCAAAAGTAGACA+TGG | 0.595301 | 1_1:-57660134 | Msa0031090:CDS |
| GTAGACATGGAATTCATGAC+AGG | 0.597395 | 1_1:-57660121 | Msa0031090:CDS |
| TGAGGAAACTCAAAAGTACA+AGG | 0.598867 | 1_1:-57660026 | Msa0031090:CDS |
| TCCACCAATTTGAAACACTC+CGG | 0.602414 | 1_1:+57662425 | None:intergenic |
| GAAACTCAAAAGTACAAGGA+AGG | 0.606538 | 1_1:-57660022 | Msa0031090:CDS |
| AGTCGATTTATTTCTTTCGG+GGG | 0.614967 | 1_1:-57662783 | Msa0031090:CDS |
| GGTATAGAGTCCTAGTGGTG+AGG | 0.620992 | 1_1:-57662483 | Msa0031090:CDS |
| TTAAATCTAGACTGTCGGGT+TGG | 0.642207 | 1_1:-57662809 | Msa0031090:CDS |
| TGAGGTACGAAAAGTCGGAT+GGG | 0.648824 | 1_1:-57662465 | Msa0031090:CDS |
| AAGCGCATAGACAGGCAGAG+AGG | 0.677176 | 1_1:+57662731 | None:intergenic |
| GGTACGAAAAGTCGGATGGG+CGG | 0.686720 | 1_1:-57662462 | Msa0031090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTTTATATTTT+GGG | + | chr1_1:57661095-57661114 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTTTTATATTT+TGG | + | chr1_1:57661096-57661115 | None:intergenic | 0.0% |
| !! | AAATTAAAAAATAGATTCAA+TGG | + | chr1_1:57660301-57660320 | None:intergenic | 10.0% |
| !!! | AAAAAATGTGAAATTTTAAA+TGG | + | chr1_1:57660803-57660822 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTATAAAAGTTAG+AGG | - | chr1_1:57660958-57660977 | Msa0031090:intron | 10.0% |
| !! | ATTTATATGAATTTAATTGA+TGG | - | chr1_1:57661615-57661634 | Msa0031090:intron | 10.0% |
| !! | TTTATATGAATTTAATTGAT+GGG | - | chr1_1:57661616-57661635 | Msa0031090:intron | 10.0% |
| !! | ACACATAATATATAAATTAA+GGG | + | chr1_1:57661809-57661828 | None:intergenic | 10.0% |
| !! | AATGCTATTAAAATTAAATA+GGG | + | chr1_1:57662447-57662466 | None:intergenic | 10.0% |
| !! | AAATGCTATTAAAATTAAAT+AGG | + | chr1_1:57662446-57662465 | None:intergenic | 10.0% |
| !! | AAATGCTATTAAAATTAAAT+AGG | - | chr1_1:57662446-57662465 | Msa0031090:CDS | 10.0% |
| !! | AATGCTATTAAAATTAAATA+GGG | - | chr1_1:57662447-57662466 | Msa0031090:CDS | 10.0% |
| !! | AAATTATATATAAATGAACT+TGG | + | chr1_1:57662768-57662787 | None:intergenic | 10.0% |
| !! | TTCATTTATATATAATTTCA+GGG | - | chr1_1:57662770-57662789 | Msa0031090:CDS | 10.0% |
| !!! | AAAACATTTGTTTTCATAAA+AGG | + | chr1_1:57660884-57660903 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTGAGAGA+AGG | - | chr1_1:57660992-57661011 | Msa0031090:intron | 15.0% |
| !!! | ACAAATATATCAAGTTTTAT+AGG | - | chr1_1:57661051-57661070 | Msa0031090:intron | 15.0% |
| !!! | TGTTTATTTTATTAAATCGT+GGG | + | chr1_1:57661243-57661262 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTATTAAATCG+TGG | + | chr1_1:57661244-57661263 | None:intergenic | 15.0% |
| !! | GATTTAATAAAATAAACAAG+AGG | - | chr1_1:57661245-57661264 | Msa0031090:intron | 15.0% |
| !!! | TTTTATTTTTTTTGAAGAAG+AGG | - | chr1_1:57661303-57661322 | Msa0031090:intron | 15.0% |
| !! | GACACATAATATATAAATTA+AGG | + | chr1_1:57661810-57661829 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr1_1:57662226-57662245 | None:intergenic | 15.0% |
| !!! | TATAAGAACGTTATATATTT+TGG | - | chr1_1:57662690-57662709 | Msa0031090:intron | 15.0% |
| !! | TTGATCAATTTATAATAACA+TGG | - | chr1_1:57662721-57662740 | Msa0031090:CDS | 15.0% |
| !! | GTTCATTTATATATAATTTC+AGG | - | chr1_1:57662769-57662788 | Msa0031090:CDS | 15.0% |
| !!! | TTTTTAATTTTTTTTTGGGG+TGG | - | chr1_1:57660311-57660330 | Msa0031090:intron | 20.0% |
| !!! | TTTTAATTTTTTTTTGGGGT+GGG | - | chr1_1:57660312-57660331 | Msa0031090:intron | 20.0% |
| !!! | AATTTCACATTTTTTCTTGA+AGG | - | chr1_1:57660808-57660827 | Msa0031090:intron | 20.0% |
| !!! | TTTTTTATAAAAGTTAGAGG+AGG | - | chr1_1:57660961-57660980 | Msa0031090:intron | 20.0% |
| !!! | TTAAAAGATGCAAGTTTTAT+AGG | - | chr1_1:57661024-57661043 | Msa0031090:intron | 20.0% |
| !!! | GCTCTTAATTATTTTCTTAA+AGG | + | chr1_1:57661171-57661190 | None:intergenic | 20.0% |
| !!! | CTTTATTTTTTTTAAGTCGT+GGG | + | chr1_1:57661209-57661228 | None:intergenic | 20.0% |
| !!! | ACTTTATTTTTTTTAAGTCG+TGG | + | chr1_1:57661210-57661229 | None:intergenic | 20.0% |
| !! | TTAATAAAATAAACAAGAGG+TGG | - | chr1_1:57661248-57661267 | Msa0031090:intron | 20.0% |
| !! | GTTGTGTTTATATTAAGTTT+AGG | + | chr1_1:57661541-57661560 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr1_1:57662096-57662115 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr1_1:57662097-57662116 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr1_1:57662191-57662210 | None:intergenic | 20.0% |
| !! | TTCAGAAATTTAAGAGTTTA+AGG | - | chr1_1:57662357-57662376 | Msa0031090:CDS | 20.0% |
| !! | CAATTTATAATAACATGGTT+AGG | - | chr1_1:57662726-57662745 | Msa0031090:CDS | 20.0% |
| ! | TTTCATAAAAGTCTTCTAGT+TGG | - | chr1_1:57659997-57660016 | Msa0031090:CDS | 25.0% |
| ! | GAATTAATATTACGAACTCT+TGG | - | chr1_1:57660019-57660038 | Msa0031090:CDS | 25.0% |
| !! | CAAAGTCGATTTATTTCTTT+CGG | - | chr1_1:57660186-57660205 | Msa0031090:intron | 25.0% |
| !! | AAAGTCGATTTATTTCTTTC+GGG | - | chr1_1:57660187-57660206 | Msa0031090:intron | 25.0% |
| !!! | TTGTAGGCGATTTTTATTTT+TGG | - | chr1_1:57660777-57660796 | Msa0031090:intron | 25.0% |
| !!! | TATTTTTTTTGAAGAAGAGG+TGG | - | chr1_1:57661306-57661325 | Msa0031090:intron | 25.0% |
| ! | GAACAAACTACTTAAACTTA+CGG | - | chr1_1:57661342-57661361 | Msa0031090:intron | 25.0% |
| ! | AACAAACTACTTAAACTTAC+GGG | - | chr1_1:57661343-57661362 | Msa0031090:intron | 25.0% |
| ! | ACTAGTTAAGGGATTATAAA+AGG | + | chr1_1:57661492-57661511 | None:intergenic | 25.0% |
| ! | TTGACTAACAATTTCTTCTT+TGG | + | chr1_1:57661680-57661699 | None:intergenic | 25.0% |
| ! | CCTAAATAAAATGATGAGTT+GGG | + | chr1_1:57661962-57661981 | None:intergenic | 25.0% |
| !!! | CCAACTCATCATTTTATTTA+GGG | - | chr1_1:57661960-57661979 | Msa0031090:intron | 25.0% |
| ! | AAATAGGGATTAAACTTACA+AGG | + | chr1_1:57662019-57662038 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+AGG | + | chr1_1:57662063-57662082 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr1_1:57662385-57662404 | Msa0031090:CDS | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr1_1:57662386-57662405 | Msa0031090:CDS | 25.0% |
| !!! | AATTAACCCTTTTATTTAGC+TGG | - | chr1_1:57662512-57662531 | Msa0031090:CDS | 25.0% |
| ! | TAGATACCAGCTAAATAAAA+GGG | + | chr1_1:57662521-57662540 | None:intergenic | 25.0% |
| ! | TTAGATACCAGCTAAATAAA+AGG | + | chr1_1:57662522-57662541 | None:intergenic | 25.0% |
| ! | ATATAATTTCAGGGAAGAAA+TGG | - | chr1_1:57662779-57662798 | Msa0031090:CDS | 25.0% |
| ! | ATGCAATGAATGTCATAATA+GGG | - | chr1_1:57662822-57662841 | Msa0031090:CDS | 25.0% |
| !! | TTGAGAAGTCTAAAATTGTT+AGG | - | chr1_1:57662984-57663003 | Msa0031090:CDS | 25.0% |
| !! | TGAGAAGTCTAAAATTGTTA+GGG | - | chr1_1:57662985-57663004 | Msa0031090:CDS | 25.0% |
| TCTCTTCTGAATTGTAAAGT+TGG | - | chr1_1:57660057-57660076 | Msa0031090:CDS | 30.0% | |
| CTCTTCTGAATTGTAAAGTT+GGG | - | chr1_1:57660058-57660077 | Msa0031090:CDS | 30.0% | |
| ! | AAGTCGATTTATTTCTTTCG+GGG | - | chr1_1:57660188-57660207 | Msa0031090:intron | 30.0% |
| AGGATAACAAGAAAATTTCC+TGG | - | chr1_1:57660339-57660358 | Msa0031090:intron | 30.0% | |
| !!! | ATTTTGATTGTGCGTTGTTA+GGG | - | chr1_1:57660426-57660445 | Msa0031090:intron | 30.0% |
| ATATGTATTCTCTTGGTTGT+AGG | - | chr1_1:57660761-57660780 | Msa0031090:intron | 30.0% | |
| CCGTATCTATTATAACAATG+CGG | + | chr1_1:57660912-57660931 | None:intergenic | 30.0% | |
| CCGCATTGTTATAATAGATA+CGG | - | chr1_1:57660909-57660928 | Msa0031090:intron | 30.0% | |
| GAGTATTCTTGTCAAAAAAG+AGG | - | chr1_1:57661270-57661289 | Msa0031090:intron | 30.0% | |
| TATTCTTGTCAAAAAAGAGG+TGG | - | chr1_1:57661273-57661292 | Msa0031090:intron | 30.0% | |
| ! | TTATTAGAGTTTTCTACGCA+TGG | + | chr1_1:57661596-57661615 | None:intergenic | 30.0% |
| GAAAACACACGAGTTATTAT+AGG | - | chr1_1:57661874-57661893 | Msa0031090:intron | 30.0% | |
| !! | CCCAACTCATCATTTTATTT+AGG | - | chr1_1:57661959-57661978 | Msa0031090:intron | 30.0% |
| CCCTAAATAAAATGATGAGT+TGG | + | chr1_1:57661963-57661982 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_1:57662478-57662497 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_1:57662477-57662496 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | + | chr1_1:57662323-57662342 | None:intergenic | 30.0% | |
| AAATAGGGACTAAACTTACA+AGG | - | chr1_1:57662462-57662481 | Msa0031090:CDS | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1_1:57662477-57662496 | Msa0031090:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1_1:57662478-57662497 | Msa0031090:CDS | 30.0% |
| ! | GCACATGTGTTAGAATTTTT+GGG | + | chr1_1:57662661-57662680 | None:intergenic | 30.0% |
| ! | TGCACATGTGTTAGAATTTT+TGG | + | chr1_1:57662662-57662681 | None:intergenic | 30.0% |
| CATGCAATGAATGTCATAAT+AGG | - | chr1_1:57662821-57662840 | Msa0031090:CDS | 30.0% | |
| ! | ATGAATTCCATGTCTACTTT+TGG | + | chr1_1:57662848-57662867 | None:intergenic | 30.0% |
| AGTAAACATCAGCAATTGTA+TGG | + | chr1_1:57662880-57662899 | None:intergenic | 30.0% | |
| TCTGAATTGTAAAGTTGGGA+AGG | - | chr1_1:57660062-57660081 | Msa0031090:CDS | 35.0% | |
| ATGTATTTGGGTCTGTCAAT+TGG | - | chr1_1:57660093-57660112 | Msa0031090:CDS | 35.0% | |
| AACCGTTAAATCTAGACTGT+CGG | - | chr1_1:57660158-57660177 | Msa0031090:CDS | 35.0% | |
| ! | AGTCGATTTATTTCTTTCGG+GGG | - | chr1_1:57660189-57660208 | Msa0031090:intron | 35.0% |
| ATGGAAGAGATTATACCTGA+AGG | + | chr1_1:57660282-57660301 | None:intergenic | 35.0% | |
| ATATGTTCTCGAAAGGAGTA+TGG | - | chr1_1:57660377-57660396 | Msa0031090:intron | 35.0% | |
| !!! | GATTTTGATTGTGCGTTGTT+AGG | - | chr1_1:57660425-57660444 | Msa0031090:intron | 35.0% |
| AACTCTGTATAAGTCGAGTA+CGG | - | chr1_1:57660732-57660751 | Msa0031090:intron | 35.0% | |
| !!! | TTTTTTTGAAGAAGAGGTGG+TGG | - | chr1_1:57661309-57661328 | Msa0031090:intron | 35.0% |
| ! | AATTGATGGGTCATGTTAAC+CGG | - | chr1_1:57661629-57661648 | Msa0031090:intron | 35.0% |
| ! | TGAGGAAACTCAAAAGTACA+AGG | - | chr1_1:57662946-57662965 | Msa0031090:CDS | 35.0% |
| ! | GAAACTCAAAAGTACAAGGA+AGG | - | chr1_1:57662950-57662969 | Msa0031090:CDS | 35.0% |
| !! | AAGGCGTCGTTCATGTATTT+GGG | - | chr1_1:57660081-57660100 | Msa0031090:CDS | 40.0% |
| TATTTGGGTCTGTCAATTGG+TGG | - | chr1_1:57660096-57660115 | Msa0031090:CDS | 40.0% | |
| GATTTAACGGTTTCCAACAC+AGG | + | chr1_1:57660150-57660169 | None:intergenic | 40.0% | |
| ACCGTTAAATCTAGACTGTC+GGG | - | chr1_1:57660159-57660178 | Msa0031090:CDS | 40.0% | |
| ACCCGACAGTCTAGATTTAA+CGG | + | chr1_1:57660163-57660182 | None:intergenic | 40.0% | |
| TTAAATCTAGACTGTCGGGT+TGG | - | chr1_1:57660163-57660182 | Msa0031090:CDS | 40.0% | |
| AGAAAATTTCCTGGATCGCT+TGG | - | chr1_1:57660348-57660367 | Msa0031090:intron | 40.0% | |
| GAGCTCTATATGTTCTCGAA+AGG | - | chr1_1:57660370-57660389 | Msa0031090:intron | 40.0% | |
| !! | GTTTTGGTATAGAGTCCTAG+TGG | - | chr1_1:57660484-57660503 | Msa0031090:intron | 40.0% |
| ! | TCCACCAATTTGAAACACTC+CGG | + | chr1_1:57660550-57660569 | None:intergenic | 40.0% |
| GAGAGAGATAGCGAAGATTA+GGG | - | chr1_1:57660568-57660587 | Msa0031090:intron | 40.0% | |
| ! | ATGGGAGGAATACTCTGTTT+TGG | - | chr1_1:57660650-57660669 | Msa0031090:intron | 40.0% |
| !! | ATACTCTGTTTTGGACCGAT+AGG | - | chr1_1:57660659-57660678 | Msa0031090:intron | 40.0% |
| GTGGCTGATATGTATTCTCT+TGG | - | chr1_1:57660754-57660773 | Msa0031090:intron | 40.0% | |
| TAAGTGTTTAACTAGTGCCC+AGG | + | chr1_1:57661380-57661399 | None:intergenic | 40.0% | |
| TAATCCCTTAACTAGTGCTC+TGG | - | chr1_1:57661496-57661515 | Msa0031090:intron | 40.0% | |
| AATCCCTTAACTAGTGCTCT+GGG | - | chr1_1:57661497-57661516 | Msa0031090:intron | 40.0% | |
| TTTCAGGGAAGAAATGGAAG+AGG | - | chr1_1:57662785-57662804 | Msa0031090:CDS | 40.0% | |
| AATAGGGCCAAAAGTAGACA+TGG | - | chr1_1:57662838-57662857 | Msa0031090:CDS | 40.0% | |
| GTAGACATGGAATTCATGAC+AGG | - | chr1_1:57662851-57662870 | Msa0031090:CDS | 40.0% | |
| GAAGTTTGAGAGAGTCTATG+AGG | - | chr1_1:57662928-57662947 | Msa0031090:CDS | 40.0% | |
| !! | GAAGGCGTCGTTCATGTATT+TGG | - | chr1_1:57660080-57660099 | Msa0031090:CDS | 45.0% |
| !! | TGTCAATTGGTGGTGATCCT+AGG | - | chr1_1:57660106-57660125 | Msa0031090:CDS | 45.0% |
| !! | ATCCTAGGAGACTAGCTTTC+TGG | - | chr1_1:57660121-57660140 | Msa0031090:CDS | 45.0% |
| !! | TCCTAGGAGACTAGCTTTCT+GGG | - | chr1_1:57660122-57660141 | Msa0031090:CDS | 45.0% |
| ! | GATTTATTTCTTTCGGGGGC+TGG | - | chr1_1:57660193-57660212 | Msa0031090:intron | 45.0% |
| ! | AAGAAGGAAAGCGCATAGAC+AGG | + | chr1_1:57660252-57660271 | None:intergenic | 45.0% |
| TCCTTCTTCAAAGCTCCTTC+AGG | - | chr1_1:57660264-57660283 | Msa0031090:intron | 45.0% | |
| !! | ACCTGAAGGAGCTTTGAAGA+AGG | + | chr1_1:57660268-57660287 | None:intergenic | 45.0% |
| !!! | TTTTTTTTGGGGTGGGAGTG+AGG | - | chr1_1:57660319-57660338 | Msa0031090:intron | 45.0% |
| ! | TGTTCTCGAAAGGAGTATGG+AGG | - | chr1_1:57660380-57660399 | Msa0031090:intron | 45.0% |
| ! | TCGAAAGGAGTATGGAGGTT+TGG | - | chr1_1:57660385-57660404 | Msa0031090:intron | 45.0% |
| ! | CGAAAGGAGTATGGAGGTTT+GGG | - | chr1_1:57660386-57660405 | Msa0031090:intron | 45.0% |
| ! | GAAAGGAGTATGGAGGTTTG+GGG | - | chr1_1:57660387-57660406 | Msa0031090:intron | 45.0% |
| ! | AAAGGAGTATGGAGGTTTGG+GGG | - | chr1_1:57660388-57660407 | Msa0031090:intron | 45.0% |
| ATTGTGCGTTGTTAGGGAAG+TGG | - | chr1_1:57660432-57660451 | Msa0031090:intron | 45.0% | |
| ! | ACTTTTCGTACCTCACCACT+AGG | + | chr1_1:57660502-57660521 | None:intergenic | 45.0% |
| AGTGGTGAGGTACGAAAAGT+CGG | - | chr1_1:57660502-57660521 | Msa0031090:intron | 45.0% | |
| TGAGGTACGAAAAGTCGGAT+GGG | - | chr1_1:57660507-57660526 | Msa0031090:intron | 45.0% | |
| GGAGAGAGATAGCGAAGATT+AGG | - | chr1_1:57660567-57660586 | Msa0031090:intron | 45.0% | |
| AGAGATAGCGAAGATTAGGG+AGG | - | chr1_1:57660571-57660590 | Msa0031090:intron | 45.0% | |
| GAGATAGCGAAGATTAGGGA+GGG | - | chr1_1:57660572-57660591 | Msa0031090:intron | 45.0% | |
| AGATAGCGAAGATTAGGGAG+GGG | - | chr1_1:57660573-57660592 | Msa0031090:intron | 45.0% | |
| ACATGGTGTTTAGGAGGGTT+GGG | - | chr1_1:57660626-57660645 | Msa0031090:intron | 45.0% | |
| TGTTTAGGAGGGTTGGGAAT+GGG | - | chr1_1:57660632-57660651 | Msa0031090:intron | 45.0% | |
| !! | TCTGTTTTGGACCGATAGGT+GGG | - | chr1_1:57660663-57660682 | Msa0031090:intron | 45.0% |
| AACATCACCAACCCACCTAT+CGG | + | chr1_1:57660677-57660696 | None:intergenic | 45.0% | |
| !! | TTGGTGATGTTCCGTTGTGT+AGG | - | chr1_1:57660686-57660705 | Msa0031090:intron | 45.0% |
| TCTGTATAAGTCGAGTACGG+TGG | - | chr1_1:57660735-57660754 | Msa0031090:intron | 45.0% | |
| ATCCCTTAACTAGTGCTCTG+GGG | - | chr1_1:57661498-57661517 | Msa0031090:intron | 45.0% | |
| TGTGACTGCAATCAAGTGCT+TGG | - | chr1_1:57662902-57662921 | Msa0031090:CDS | 45.0% | |
| ACTGCAATCAAGTGCTTGGT+TGG | - | chr1_1:57662906-57662925 | Msa0031090:CDS | 45.0% | |
| !!! | TCTATTTTTTAATTTTTTTT+TGG | - | chr1_1:57660306-57660325 | Msa0031090:intron | 5.0% |
| !!! | CTATTTTTTAATTTTTTTTT+GGG | - | chr1_1:57660307-57660326 | Msa0031090:intron | 5.0% |
| !!! | TATTTTTTAATTTTTTTTTG+GGG | - | chr1_1:57660308-57660327 | Msa0031090:intron | 5.0% |
| !!! | AATTTTCTTAAAAAAAATTT+GGG | + | chr1_1:57660841-57660860 | None:intergenic | 5.0% |
| !!! | AAATTTTCTTAAAAAAAATT+TGG | + | chr1_1:57660842-57660861 | None:intergenic | 5.0% |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | - | chr1_1:57662417-57662436 | Msa0031090:CDS | 5.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | - | chr1_1:57662418-57662437 | Msa0031090:CDS | 5.0% |
| ! | TCCCAGAAAGCTAGTCTCCT+AGG | + | chr1_1:57660126-57660145 | None:intergenic | 50.0% |
| ! | AGCTTTCTGGGAACCTGTGT+TGG | - | chr1_1:57660134-57660153 | Msa0031090:CDS | 50.0% |
| ! | TATTTCTTTCGGGGGCTGGT+TGG | - | chr1_1:57660197-57660216 | Msa0031090:intron | 50.0% |
| TATAGAGCTCCAAGCGATCC+AGG | + | chr1_1:57660360-57660379 | None:intergenic | 50.0% | |
| CGTTGTTAGGGAAGTGGTGT+TGG | - | chr1_1:57660438-57660457 | Msa0031090:intron | 50.0% | |
| ! | TGTTAGGGAAGTGGTGTTGG+CGG | - | chr1_1:57660441-57660460 | Msa0031090:intron | 50.0% |
| ! | GGATGTTGGTGGATAGAGGT+GGG | - | chr1_1:57660462-57660481 | Msa0031090:intron | 50.0% |
| !! | TGGTGGATAGAGGTGGGTTT+TGG | - | chr1_1:57660468-57660487 | Msa0031090:intron | 50.0% |
| GGTATAGAGTCCTAGTGGTG+AGG | - | chr1_1:57660489-57660508 | Msa0031090:intron | 50.0% | |
| GTGAGGTACGAAAAGTCGGA+TGG | - | chr1_1:57660506-57660525 | Msa0031090:intron | 50.0% | |
| ! | GCCGGAGTGTTTCAAATTGG+TGG | - | chr1_1:57660546-57660565 | Msa0031090:intron | 50.0% |
| GGTTCCCAGACATGGTGTTT+AGG | - | chr1_1:57660617-57660636 | Msa0031090:intron | 50.0% | |
| TCCCAGACATGGTGTTTAGG+AGG | - | chr1_1:57660620-57660639 | Msa0031090:intron | 50.0% | |
| CCCTCCTAAACACCATGTCT+GGG | + | chr1_1:57660624-57660643 | None:intergenic | 50.0% | |
| CCCAGACATGGTGTTTAGGA+GGG | - | chr1_1:57660621-57660640 | Msa0031090:intron | 50.0% | |
| ACCCTCCTAAACACCATGTC+TGG | + | chr1_1:57660625-57660644 | None:intergenic | 50.0% | |
| GACATGGTGTTTAGGAGGGT+TGG | - | chr1_1:57660625-57660644 | Msa0031090:intron | 50.0% | |
| GTGTTTAGGAGGGTTGGGAA+TGG | - | chr1_1:57660631-57660650 | Msa0031090:intron | 50.0% | |
| !! | CTCTGTTTTGGACCGATAGG+TGG | - | chr1_1:57660662-57660681 | Msa0031090:intron | 50.0% |
| ! | TTTTGGACCGATAGGTGGGT+TGG | - | chr1_1:57660667-57660686 | Msa0031090:intron | 50.0% |
| GTGATGTTCCGTTGTGTAGG+CGG | - | chr1_1:57660689-57660708 | Msa0031090:intron | 50.0% | |
| TCCCTTAACTAGTGCTCTGG+GGG | - | chr1_1:57661499-57661518 | Msa0031090:intron | 50.0% | |
| TCATGTTAACCGGTGCCCTA+GGG | - | chr1_1:57661639-57661658 | Msa0031090:intron | 50.0% | |
| CTTCCTTAACCAGTGCCCTA+GGG | + | chr1_1:57661657-57661676 | None:intergenic | 50.0% | |
| TGCTTCCTTAACCAGTGTCC+CGG | - | chr1_1:57661765-57661784 | Msa0031090:intron | 50.0% | |
| AAATGTTAACCAGTGCCCCC+GGG | + | chr1_1:57661517-57661536 | None:intergenic | 50.0% | |
| GAAATGTTAACCAGTGCCCC+CGG | + | chr1_1:57661787-57661806 | None:intergenic | 50.0% | |
| AAGCGCATAGACAGGCAGAG+AGG | + | chr1_1:57660244-57660263 | None:intergenic | 55.0% | |
| AGTATGGAGGTTTGGGGGTG+CGG | - | chr1_1:57660393-57660412 | Msa0031090:intron | 55.0% | |
| ! | TTTGGGGGTGCGGAAGTTGA+AGG | - | chr1_1:57660403-57660422 | Msa0031090:intron | 55.0% |
| !! | GAAGTGGTGTTGGCGGATGT+TGG | - | chr1_1:57660448-57660467 | Msa0031090:intron | 55.0% |
| ! | TGGCGGATGTTGGTGGATAG+AGG | - | chr1_1:57660458-57660477 | Msa0031090:intron | 55.0% |
| ! | CGGATGTTGGTGGATAGAGG+TGG | - | chr1_1:57660461-57660480 | Msa0031090:intron | 55.0% |
| GGTACGAAAAGTCGGATGGG+CGG | - | chr1_1:57660510-57660529 | Msa0031090:intron | 55.0% | |
| ! | GGGGCCGGAGTGTTTCAAAT+TGG | - | chr1_1:57660543-57660562 | Msa0031090:intron | 55.0% |
| AGCGAAGATTAGGGAGGGGT+TGG | - | chr1_1:57660577-57660596 | Msa0031090:intron | 55.0% | |
| GATTAGGGAGGGGTTGGAGA+AGG | - | chr1_1:57660583-57660602 | Msa0031090:intron | 55.0% | |
| !! | GGGATGTTGGTTCCCAGACA+TGG | - | chr1_1:57660609-57660628 | Msa0031090:intron | 55.0% |
| TTAGGAGGGTTGGGAATGGG+AGG | - | chr1_1:57660635-57660654 | Msa0031090:intron | 55.0% | |
| CGACTGAACCGCCTACACAA+CGG | + | chr1_1:57660700-57660719 | None:intergenic | 55.0% | |
| TTACGGGTAACCAGTGCTCC+TGG | - | chr1_1:57661359-57661378 | Msa0031090:intron | 55.0% | |
| TACGGGTAACCAGTGCTCCT+GGG | - | chr1_1:57661360-57661379 | Msa0031090:intron | 55.0% | |
| ! | TAACTAGTGCCCAGGAGCAC+TGG | + | chr1_1:57661372-57661391 | None:intergenic | 55.0% |
| ! | GCCCCCAGAGCACTAGTTAA+GGG | + | chr1_1:57661503-57661522 | None:intergenic | 55.0% |
| ! | TGCCCCCAGAGCACTAGTTA+AGG | + | chr1_1:57661504-57661523 | None:intergenic | 55.0% |
| GTCATGTTAACCGGTGCCCT+AGG | - | chr1_1:57661638-57661657 | Msa0031090:intron | 55.0% | |
| GCTTCCTTAACCAGTGCCCT+AGG | + | chr1_1:57661658-57661677 | None:intergenic | 55.0% | |
| GCTTCCTTAACCAGTGTCCC+GGG | - | chr1_1:57661766-57661785 | Msa0031090:intron | 55.0% | |
| CTTCCTTAACCAGTGTCCCG+GGG | - | chr1_1:57661767-57661786 | Msa0031090:intron | 55.0% | |
| TTCCTTAACCAGTGTCCCGG+GGG | - | chr1_1:57661768-57661787 | Msa0031090:intron | 55.0% | |
| !! | GTGGTGTTGGCGGATGTTGG+TGG | - | chr1_1:57660451-57660470 | Msa0031090:intron | 60.0% |
| CGAAAAGTCGGATGGGCGGT+TGG | - | chr1_1:57660514-57660533 | Msa0031090:intron | 60.0% | |
| AAAGTCGGATGGGCGGTTGG+AGG | - | chr1_1:57660517-57660536 | Msa0031090:intron | 60.0% | |
| TAGGGAGGGGTTGGAGAAGG+CGG | - | chr1_1:57660586-57660605 | Msa0031090:intron | 60.0% | |
| TTGGAGAAGGCGGGGGATGT+TGG | - | chr1_1:57660596-57660615 | Msa0031090:intron | 60.0% | |
| !! | AACTAGTGCTCTGGGGGCAC+TGG | - | chr1_1:57661505-57661524 | Msa0031090:intron | 60.0% |
| TAACCAGTGCCCTAGGGCAC+CGG | + | chr1_1:57661651-57661670 | None:intergenic | 60.0% | |
| !! | GTGCCCTAGGGCACTGGTTA+AGG | - | chr1_1:57661651-57661670 | Msa0031090:intron | 60.0% |
| TCGGATGGGCGGTTGGAGGT+AGG | - | chr1_1:57660521-57660540 | Msa0031090:intron | 65.0% | |
| CGGATGGGCGGTTGGAGGTA+GGG | - | chr1_1:57660522-57660541 | Msa0031090:intron | 65.0% | |
| GGATGGGCGGTTGGAGGTAG+GGG | - | chr1_1:57660523-57660542 | Msa0031090:intron | 65.0% | |
| GATGGGCGGTTGGAGGTAGG+GGG | - | chr1_1:57660524-57660543 | Msa0031090:intron | 65.0% | |
| AGGGAGGGGTTGGAGAAGGC+GGG | - | chr1_1:57660587-57660606 | Msa0031090:intron | 65.0% | |
| TAACCGGTGCCCTAGGGCAC+TGG | - | chr1_1:57661645-57661664 | Msa0031090:intron | 65.0% | |
| ! | TGCCCCCGGGACACTGGTTA+AGG | + | chr1_1:57661773-57661792 | None:intergenic | 65.0% |
| GGGAGGGGTTGGAGAAGGCG+GGG | - | chr1_1:57660588-57660607 | Msa0031090:intron | 70.0% | |
| GGAGGGGTTGGAGAAGGCGG+GGG | - | chr1_1:57660589-57660608 | Msa0031090:intron | 70.0% | |
| ! | AACCAGTGTCCCGGGGGCAC+TGG | - | chr1_1:57661774-57661793 | Msa0031090:intron | 70.0% |
| AACCAGTGCCCCCGGGACAC+TGG | + | chr1_1:57661779-57661798 | None:intergenic | 70.0% | |
| GGCGGTTGGAGGTAGGGGGC+CGG | - | chr1_1:57660528-57660547 | Msa0031090:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57659976 | 57663018 | 57659976 | ID=Msa0031090;Name=Msa0031090 |
| chr1_1 | mRNA | 57659976 | 57663018 | 57659976 | ID=Msa0031090-mRNA-1;Parent=Msa0031090;Name=Msa0031090-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0|0.33|1|1|3|0|259 |
| chr1_1 | exon | 57662709 | 57663018 | 57662709 | ID=Msa0031090-mRNA-1:exon:17456;Parent=Msa0031090-mRNA-1 |
| chr1_1 | exon | 57662306 | 57662547 | 57662306 | ID=Msa0031090-mRNA-1:exon:17455;Parent=Msa0031090-mRNA-1 |
| chr1_1 | exon | 57659976 | 57660203 | 57659976 | ID=Msa0031090-mRNA-1:exon:17454;Parent=Msa0031090-mRNA-1 |
| chr1_1 | CDS | 57662709 | 57663018 | 57662709 | ID=Msa0031090-mRNA-1:cds;Parent=Msa0031090-mRNA-1 |
| chr1_1 | CDS | 57662306 | 57662547 | 57662306 | ID=Msa0031090-mRNA-1:cds;Parent=Msa0031090-mRNA-1 |
| chr1_1 | CDS | 57659976 | 57660203 | 57659976 | ID=Msa0031090-mRNA-1:cds;Parent=Msa0031090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
