Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0610370 | AES90005.1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 1.02e-53 | 172 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005350 | Msa0610370 | 0.801455 | 8.933910e-49 | -8.615850e-47 |
Msa0025740 | Msa0610370 | 0.801819 | 7.521664e-49 | -8.615850e-47 |
Msa0031050 | Msa0610370 | 0.810643 | 1.040878e-50 | -8.615850e-47 |
Msa0031090 | Msa0610370 | 0.819675 | 1.025247e-52 | -8.615850e-47 |
Msa0033340 | Msa0610370 | 0.816124 | 6.502086e-52 | -8.615850e-47 |
Msa0044710 | Msa0610370 | 0.831610 | 1.514441e-55 | -8.615850e-47 |
Msa0053900 | Msa0610370 | 0.808618 | 2.835211e-50 | -8.615850e-47 |
Msa0069310 | Msa0610370 | 0.810310 | 1.228310e-50 | -8.615850e-47 |
Msa0071240 | Msa0610370 | 0.810401 | 1.174207e-50 | -8.615850e-47 |
Msa0078430 | Msa0610370 | 0.828726 | 7.660102e-55 | -8.615850e-47 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0610370 | MtrunA17_Chr4g0043191 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 9.42e-58 | 172 |
Msa0610370 | MtrunA17_Chr4g0043181 | 80.899 | 89 | 13 | 1 | 1 | 89 | 1 | 85 | 5.05e-40 | 127 |
Msa0610370 | MtrunA17_Chr8g0376661 | 79.545 | 88 | 18 | 0 | 1 | 88 | 1 | 88 | 1.65e-36 | 118 |
Msa0610370 | MtrunA17_Chr5g0434291 | 77.528 | 89 | 20 | 0 | 1 | 89 | 1 | 89 | 2.91e-36 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0610370 | AT1G30260.1 | 60.417 | 48 | 18 | 1 | 1 | 48 | 1 | 47 | 3.72e-15 | 65.1 |
Find 12 sgRNAs with CRISPR-Local
Find 18 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAACTGCATTGGTAGAAG+AGG | 0.557920 | 4_2:+58070882 | None:intergenic |
AACAATCACTGAAGAGGATA+TGG | 0.331678 | 4_2:-58070980 | Msa0610370:CDS |
ATCACGCTAACATACTGTGG+TGG | 0.690677 | 4_2:+58071030 | None:intergenic |
CACAGTATGTTAGCGTGATG+AGG | 0.569645 | 4_2:-58071026 | Msa0610370:CDS |
CCAATGCAGTTGTTAATTCT+AGG | 0.257861 | 4_2:-58070873 | Msa0610370:CDS |
CCTAGAATTAACAACTGCAT+TGG | 0.551602 | 4_2:+58070873 | None:intergenic |
CTCATCACGCTAACATACTG+TGG | 0.654266 | 4_2:+58071027 | None:intergenic |
GATGGAAACAATCACTGAAG+AGG | 0.591147 | 4_2:-58070986 | Msa0610370:CDS |
GCGTAGAACATCAAAGATGA+TGG | 0.510830 | 4_2:-58071004 | Msa0610370:CDS |
GTGTTCTATGAACTTCCTTC+AGG | 0.381163 | 4_2:+58070845 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AACAATCACTGAAGAGGATA+TGG | - | chr4_2:58070917-58070936 | Msa0610370:CDS | 35.0% | |
CCTAGAATTAACAACTGCAT+TGG | + | chr4_2:58071027-58071046 | None:intergenic | 35.0% | |
CCAATGCAGTTGTTAATTCT+AGG | - | chr4_2:58071024-58071043 | Msa0610370:CDS | 35.0% | |
TAATTCTAGGTACTTCCTGA+AGG | - | chr4_2:58071037-58071056 | Msa0610370:CDS | 35.0% | |
GCGTAGAACATCAAAGATGA+TGG | - | chr4_2:58070893-58070912 | Msa0610370:CDS | 40.0% | |
GATGGAAACAATCACTGAAG+AGG | - | chr4_2:58070911-58070930 | Msa0610370:CDS | 40.0% | |
GTGTTCTATGAACTTCCTTC+AGG | + | chr4_2:58071055-58071074 | None:intergenic | 40.0% | |
ATCACGCTAACATACTGTGG+TGG | + | chr4_2:58070870-58070889 | None:intergenic | 45.0% | |
CTCATCACGCTAACATACTG+TGG | + | chr4_2:58070873-58070892 | None:intergenic | 45.0% | |
CACAGTATGTTAGCGTGATG+AGG | - | chr4_2:58070871-58070890 | Msa0610370:CDS | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 58070825 | 58071094 | 58070825 | ID=Msa0610370;Name=Msa0610370 |
chr4_2 | mRNA | 58070825 | 58071094 | 58070825 | ID=Msa0610370-mRNA-1;Parent=Msa0610370;Name=Msa0610370-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|89 |
chr4_2 | exon | 58070825 | 58071094 | 58070825 | ID=Msa0610370-mRNA-1:exon:15226;Parent=Msa0610370-mRNA-1 |
chr4_2 | CDS | 58070825 | 58071094 | 58070825 | ID=Msa0610370-mRNA-1:cds;Parent=Msa0610370-mRNA-1 |
Gene Sequence |
>Msa0610370 ATGGCGAATTCTCGCATTGCAAGGTTTTTCATGGAGGTGGCACCACCACAGTATGTTAGCGTGATGAGGCGTAGAACATCAAAGATGATGGAAACAATCACTGAAGAGGATATGGAAATGAGTTCAAATGATAGTGTAATTCCACCACCTAAAAGTTCATCAACTTCATCACTTGCTGCTTCTGCATGTGCCTCTTCTACCAATGCAGTTGTTAATTCTAGGTACTTCCTGAAGGAAGTTCATAGAACACTCTCAAGTTTGAATCACTGA |
Protein sequence |
>Msa0610370 MANSRIARFFMEVAPPQYVSVMRRRTSKMMETITEEDMEMSSNDSVIPPPKSSSTSSLAASACASSTNAVVNSRYFLKEVHRTLSSLNH* |