Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036010 | sp|Q9LZR3|CSLA9_ARATH | 76.608 | 513 | 117 | 3 | 17 | 528 | 21 | 531 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035810 | Msa0036010 | 0.954592 | 2.088461e-112 | -8.615850e-47 |
| Msa0036010 | Msa0083920 | 0.879760 | 9.577177e-70 | -8.615850e-47 |
| Msa0036010 | Msa0130240 | 0.801038 | 1.087154e-48 | -8.615850e-47 |
| Msa0036010 | Msa0872310 | 0.808472 | 3.045743e-50 | -8.615850e-47 |
| Msa0036010 | Msa0930780 | 0.811772 | 5.923947e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036010 | MtrunA17_Chr1g0198111 | 99.245 | 530 | 4 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1092 |
| Msa0036010 | MtrunA17_Chr7g0265711 | 76.460 | 531 | 121 | 2 | 1 | 528 | 1 | 530 | 0.0 | 878 |
| Msa0036010 | MtrunA17_Chr1g0179441 | 75.624 | 521 | 126 | 1 | 10 | 530 | 4 | 523 | 0.0 | 855 |
| Msa0036010 | MtrunA17_Chr1g0179421 | 71.785 | 521 | 146 | 1 | 10 | 530 | 4 | 523 | 0.0 | 813 |
| Msa0036010 | MtrunA17_Chr1g0179381 | 70.441 | 521 | 152 | 2 | 10 | 530 | 4 | 522 | 0.0 | 793 |
| Msa0036010 | MtrunA17_Chr4g0027221 | 67.297 | 529 | 159 | 3 | 12 | 527 | 15 | 542 | 0.0 | 760 |
| Msa0036010 | MtrunA17_Chr7g0264621 | 63.529 | 510 | 182 | 3 | 21 | 528 | 21 | 528 | 0.0 | 699 |
| Msa0036010 | MtrunA17_Chr1g0179391 | 76.106 | 339 | 81 | 0 | 139 | 477 | 1 | 339 | 0.0 | 565 |
| Msa0036010 | MtrunA17_Chr3g0135191 | 48.611 | 432 | 216 | 3 | 25 | 455 | 171 | 597 | 2.19e-146 | 436 |
| Msa0036010 | MtrunA17_Chr4g0000581 | 48.190 | 442 | 225 | 2 | 16 | 457 | 162 | 599 | 8.04e-146 | 435 |
| Msa0036010 | MtrunA17_Chr3g0139081 | 47.033 | 455 | 238 | 2 | 25 | 479 | 155 | 606 | 3.61e-144 | 431 |
| Msa0036010 | MtrunA17_Chr6g0451381 | 45.495 | 455 | 239 | 3 | 24 | 477 | 139 | 585 | 1.65e-143 | 428 |
| Msa0036010 | MtrunA17_Chr8g0339101 | 41.588 | 529 | 275 | 5 | 25 | 524 | 175 | 698 | 5.83e-133 | 402 |
| Msa0036010 | MtrunA17_Chr1g0179401 | 63.359 | 131 | 47 | 1 | 10 | 140 | 4 | 133 | 1.57e-52 | 176 |
| Msa0036010 | MtrunA17_Chr4g0064791 | 44.355 | 124 | 63 | 1 | 79 | 196 | 77 | 200 | 5.16e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036010 | AT5G03760.1 | 76.608 | 513 | 117 | 3 | 17 | 528 | 21 | 531 | 0.0 | 832 |
| Msa0036010 | AT5G22740.1 | 71.401 | 521 | 146 | 3 | 10 | 528 | 14 | 533 | 0.0 | 797 |
| Msa0036010 | AT1G23480.1 | 68.605 | 516 | 162 | 0 | 13 | 528 | 39 | 554 | 0.0 | 772 |
| Msa0036010 | AT1G23480.2 | 68.605 | 516 | 162 | 0 | 13 | 528 | 39 | 554 | 0.0 | 772 |
| Msa0036010 | AT1G23480.3 | 70.539 | 482 | 142 | 0 | 47 | 528 | 1 | 482 | 0.0 | 739 |
| Msa0036010 | AT4G13410.1 | 64.833 | 509 | 173 | 2 | 16 | 524 | 34 | 536 | 0.0 | 728 |
| Msa0036010 | AT2G35650.1 | 66.732 | 514 | 167 | 2 | 17 | 530 | 43 | 552 | 0.0 | 726 |
| Msa0036010 | AT5G16190.3 | 67.000 | 500 | 163 | 2 | 25 | 524 | 6 | 503 | 0.0 | 709 |
| Msa0036010 | AT1G24070.1 | 63.168 | 524 | 190 | 3 | 2 | 524 | 30 | 551 | 0.0 | 706 |
| Msa0036010 | AT2G35650.4 | 68.182 | 484 | 150 | 2 | 47 | 530 | 1 | 480 | 0.0 | 698 |
| Msa0036010 | AT2G35650.2 | 68.182 | 484 | 150 | 2 | 47 | 530 | 1 | 480 | 0.0 | 698 |
| Msa0036010 | AT5G16190.4 | 62.852 | 533 | 163 | 3 | 25 | 524 | 6 | 536 | 0.0 | 693 |
| Msa0036010 | AT3G56000.1 | 60.501 | 519 | 199 | 4 | 16 | 530 | 13 | 529 | 0.0 | 667 |
| Msa0036010 | AT5G16190.2 | 70.022 | 447 | 132 | 2 | 25 | 471 | 6 | 450 | 0.0 | 662 |
| Msa0036010 | AT5G16190.1 | 69.231 | 442 | 135 | 1 | 83 | 524 | 2 | 442 | 0.0 | 651 |
| Msa0036010 | AT4G16590.1 | 58.020 | 505 | 176 | 3 | 20 | 524 | 51 | 519 | 0.0 | 621 |
| Msa0036010 | AT1G23480.4 | 70.694 | 389 | 114 | 0 | 140 | 528 | 21 | 409 | 0.0 | 598 |
| Msa0036010 | AT4G13410.3 | 67.105 | 380 | 120 | 1 | 145 | 524 | 1 | 375 | 0.0 | 565 |
| Msa0036010 | AT2G35650.3 | 67.684 | 393 | 124 | 1 | 138 | 530 | 5 | 394 | 0.0 | 561 |
| Msa0036010 | AT4G13410.2 | 64.444 | 360 | 119 | 3 | 16 | 374 | 34 | 385 | 2.98e-176 | 502 |
| Msa0036010 | AT1G24070.2 | 61.039 | 385 | 136 | 4 | 2 | 385 | 30 | 401 | 2.30e-171 | 490 |
| Msa0036010 | AT4G31590.1 | 47.903 | 453 | 228 | 3 | 25 | 472 | 160 | 609 | 9.96e-149 | 442 |
| Msa0036010 | AT2G24630.1 | 49.083 | 436 | 213 | 3 | 25 | 457 | 160 | 589 | 1.74e-148 | 442 |
| Msa0036010 | AT2G24630.2 | 49.083 | 436 | 213 | 3 | 25 | 457 | 160 | 589 | 1.74e-148 | 442 |
| Msa0036010 | AT3G28180.1 | 47.973 | 444 | 222 | 3 | 15 | 457 | 126 | 561 | 2.12e-145 | 434 |
| Msa0036010 | AT3G07330.1 | 41.588 | 529 | 277 | 5 | 25 | 524 | 153 | 678 | 5.92e-141 | 422 |
| Msa0036010 | AT3G07330.2 | 41.588 | 529 | 277 | 5 | 25 | 524 | 153 | 678 | 5.92e-141 | 422 |
| Msa0036010 | AT4G07960.1 | 43.643 | 527 | 265 | 7 | 25 | 524 | 174 | 695 | 4.36e-138 | 416 |
| Msa0036010 | AT4G07960.2 | 43.643 | 527 | 265 | 7 | 25 | 524 | 174 | 695 | 4.36e-138 | 416 |
Find 134 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAGAGAAACATTATAAA+TGG | 0.193489 | 1_1:+64353594 | Msa0036010:CDS |
| CTCTGCTTTCCCTATGGTTT+TGG | 0.193902 | 1_1:+64353652 | Msa0036010:CDS |
| TTCAAGTATTACAAAATAAT+TGG | 0.222837 | 1_1:-64358178 | None:intergenic |
| TCCATAACTCATGCTTTCTT+TGG | 0.225275 | 1_1:+64356268 | Msa0036010:CDS |
| AGCAAATCTCTTCAGGAAAA+TGG | 0.286938 | 1_1:+64357154 | Msa0036010:CDS |
| AGGACCAAGGCAACAGTTAT+AGG | 0.295281 | 1_1:+64357646 | Msa0036010:CDS |
| CTCAACAGATCCAATCATTA+AGG | 0.296511 | 1_1:+64355617 | Msa0036010:CDS |
| ATTGTCTTTCTTAAGTTGTT+TGG | 0.309441 | 1_1:+64353566 | Msa0036010:CDS |
| ATGGGTAGTTACTGAGAAAT+TGG | 0.313856 | 1_1:+64357696 | Msa0036010:CDS |
| CATGCTTTCTTTGGTTTCAA+TGG | 0.321614 | 1_1:+64356277 | Msa0036010:CDS |
| TTGGAGTTCCAACAGCATTA+AGG | 0.324765 | 1_1:-64357486 | None:intergenic |
| GGATGCTATGATCTTGCCTT+TGG | 0.327298 | 1_1:+64357923 | Msa0036010:CDS |
| TCTATTGCCTTCTTTGTTGT+GGG | 0.334726 | 1_1:+64357980 | Msa0036010:CDS |
| CTATCATTTCCTTGTGGAAC+AGG | 0.336157 | 1_1:+64356237 | Msa0036010:CDS |
| AGGCTCCCACACCAAGTTCT+AGG | 0.349691 | 1_1:-64357886 | None:intergenic |
| GATTTCAAAACCTTAATGAT+TGG | 0.350715 | 1_1:-64355627 | None:intergenic |
| TCCCATTTATAATGTTTCTC+TGG | 0.352310 | 1_1:-64353596 | None:intergenic |
| AGATTTGAAAGTGTGCATTA+TGG | 0.359486 | 1_1:+64353407 | Msa0036010:CDS |
| TTAACCAAATGAATTTCATT+TGG | 0.366936 | 1_1:+64353435 | Msa0036010:CDS |
| TCTGGAACTAAAACAGTTGC+AGG | 0.378471 | 1_1:-64357412 | None:intergenic |
| GTTGCCAAATGAAATTCATT+TGG | 0.381283 | 1_1:-64353439 | None:intergenic |
| CACTTGGGAACTTCTACTTC+TGG | 0.390733 | 1_1:-64357430 | None:intergenic |
| GATGCTATGATCTTGCCTTT+GGG | 0.390992 | 1_1:+64357924 | Msa0036010:CDS |
| TTATAAATGGGAGGCACTTA+AGG | 0.390999 | 1_1:+64353607 | Msa0036010:CDS |
| GTGGCCCAGCAAATCTCTTC+AGG | 0.393738 | 1_1:+64357147 | Msa0036010:CDS |
| ATCTATTGCCTTCTTTGTTG+TGG | 0.397674 | 1_1:+64357979 | Msa0036010:CDS |
| GAGTTGTTCCTCTTAAGATC+TGG | 0.398027 | 1_1:-64358029 | None:intergenic |
| CGGTAGGCTTTGAATGTACT+TGG | 0.409136 | 1_1:-64357101 | None:intergenic |
| CCACATGGGCTATGATCTTC+CGG | 0.409526 | 1_1:-64357360 | None:intergenic |
| CCGCACAACAGTGGAAGATA+TGG | 0.414499 | 1_1:+64356459 | Msa0036010:CDS |
| CGGTAAAGAAAGTTAGATTC+AGG | 0.418214 | 1_1:-64355922 | None:intergenic |
| CAGGTGTATCAATTATCAAT+TGG | 0.424571 | 1_1:+64355537 | Msa0036010:intron |
| AAACATAAAGTATGAGATAA+GGG | 0.425945 | 1_1:+64355798 | Msa0036010:CDS |
| TAGGTTTGTTTGAGGCTGGT+AGG | 0.426910 | 1_1:+64357665 | Msa0036010:CDS |
| ATGCAGGTACAGCTGGTGTT+TGG | 0.427415 | 1_1:+64356398 | Msa0036010:intron |
| CTATGTTCCCAGATCTTAAG+AGG | 0.430666 | 1_1:+64358021 | Msa0036010:exon |
| CAAAGAAGGCAATAGATTGC+AGG | 0.430943 | 1_1:-64357973 | None:intergenic |
| AGTTCCAGTGTTGAAATTGT+TGG | 0.435622 | 1_1:+64353481 | Msa0036010:CDS |
| ATTACACTCCTTAATGCTGT+TGG | 0.436203 | 1_1:+64357478 | Msa0036010:CDS |
| CAAACCTATAACTGTTGCCT+TGG | 0.447912 | 1_1:-64357650 | None:intergenic |
| AGGATTCATTTCCTAGAACT+TGG | 0.450671 | 1_1:+64357875 | Msa0036010:intron |
| GAACAACTCACTCTTGCATA+TGG | 0.455763 | 1_1:+64358043 | Msa0036010:three_prime_UTR |
| ATTTCATTTGGCAACAAGCT+AGG | 0.462248 | 1_1:+64353447 | Msa0036010:CDS |
| GATGCTCTTAAAATAAAATC+AGG | 0.465710 | 1_1:+64357721 | Msa0036010:CDS |
| CTCTGGGATATCATCGAGTT+CGG | 0.468185 | 1_1:+64358090 | Msa0036010:three_prime_UTR |
| ACCAGAGAAACATTATAAAT+GGG | 0.469392 | 1_1:+64353595 | Msa0036010:CDS |
| TGGAAACTCTGCTTTCCCTA+TGG | 0.470085 | 1_1:+64353646 | Msa0036010:CDS |
| GAGATAAGGGAAAATAGAAA+TGG | 0.471145 | 1_1:+64355811 | Msa0036010:CDS |
| TGTGAGAGATGGAGAAGGAA+AGG | 0.472902 | 1_1:+64355772 | Msa0036010:CDS |
| AATAGAAATGGTTACAAAGC+TGG | 0.476155 | 1_1:+64355823 | Msa0036010:CDS |
| AGGCTGGTAGGGTAAATGAA+TGG | 0.476703 | 1_1:+64357677 | Msa0036010:CDS |
| AGTTGTTCCTCTTAAGATCT+GGG | 0.480205 | 1_1:-64358028 | None:intergenic |
| GTTCAAGCTCGATGGCAATT+CGG | 0.480229 | 1_1:+64355985 | Msa0036010:CDS |
| ACCAAAGAAAGCATGAGTTA+TGG | 0.484858 | 1_1:-64356269 | None:intergenic |
| AATCCCAATGTATAATGAAA+AGG | 0.485916 | 1_1:+64353679 | Msa0036010:CDS |
| AGGTTTGTTTGAGGCTGGTA+GGG | 0.485982 | 1_1:+64357666 | Msa0036010:CDS |
| GTTATAGGTTTGTTTGAGGC+TGG | 0.487666 | 1_1:+64357661 | Msa0036010:CDS |
| GATGAAAGCTTATCCATCTC+AGG | 0.487892 | 1_1:-64353377 | None:intergenic |
| TTGAAAATCAGCATCAAAGA+TGG | 0.492249 | 1_1:-64355899 | None:intergenic |
| TAAACATAAAGTATGAGATA+AGG | 0.492901 | 1_1:+64355797 | Msa0036010:CDS |
| TTTGTAGAAAGAGTTTATAT+GGG | 0.493598 | 1_1:+64353536 | Msa0036010:CDS |
| AACAGTTATAGGTTTGTTTG+AGG | 0.493816 | 1_1:+64357657 | Msa0036010:CDS |
| TTCCTTGTGGAACAGGAAGT+TGG | 0.500052 | 1_1:+64356244 | Msa0036010:CDS |
| ATGGTTCATGCAGGTACAGC+TGG | 0.500432 | 1_1:+64356391 | Msa0036010:intron |
| TGTGTGACTGTTGTAAACTC+TGG | 0.502343 | 1_1:+64358073 | Msa0036010:three_prime_UTR |
| ACCAAGAAAGCTTCCTGAGA+TGG | 0.505015 | 1_1:+64353364 | None:intergenic |
| AAAGCTGGTGCTCTTAAAGA+AGG | 0.505067 | 1_1:+64355838 | Msa0036010:CDS |
| TTCAACACTGGAACTATAAG+TGG | 0.505104 | 1_1:-64353473 | None:intergenic |
| TTTCATTTGGCAACAAGCTA+GGG | 0.505126 | 1_1:+64353448 | Msa0036010:CDS |
| TATATAGACAGCACCCCACT+TGG | 0.506102 | 1_1:-64357446 | None:intergenic |
| GAGCTGCATGTGGGTTATCA+TGG | 0.506578 | 1_1:+64355559 | Msa0036010:CDS |
| CTATTGCCTTCTTTGTTGTG+GGG | 0.506806 | 1_1:+64357981 | Msa0036010:CDS |
| CTTGATCAAAATCCACAAGT+TGG | 0.507813 | 1_1:+64355958 | Msa0036010:CDS |
| GAGAATGCAAGAGATGTCAT+TGG | 0.511291 | 1_1:+64356213 | Msa0036010:CDS |
| GGCTGGTAGGGTAAATGAAT+GGG | 0.511827 | 1_1:+64357678 | Msa0036010:CDS |
| CACTAAATGAAGCTGGTGGA+TGG | 0.511876 | 1_1:+64356431 | Msa0036010:CDS |
| GGGATTTGCACCAAAACCAT+AGG | 0.516420 | 1_1:-64353662 | None:intergenic |
| TGGGTAGTTACTGAGAAATT+GGG | 0.526326 | 1_1:+64357697 | Msa0036010:CDS |
| AAGGATGATGATATCGAGCT+TGG | 0.528085 | 1_1:+64353626 | Msa0036010:CDS |
| TACGAGCTAGTCTCAAAGGC+TGG | 0.530014 | 1_1:+64356491 | Msa0036010:CDS |
| TATTGCCTTCTTTGTTGTGG+GGG | 0.530266 | 1_1:+64357982 | Msa0036010:CDS |
| CATTCCACTTAGTAATATTG+TGG | 0.530712 | 1_1:+64357593 | Msa0036010:CDS |
| ACTACCAACAATTTCAACAC+TGG | 0.552023 | 1_1:-64353485 | None:intergenic |
| AAAATACCTTGAGGTCACTA+AGG | 0.552124 | 1_1:-64356525 | None:intergenic |
| TGAATAATAATTCTATCAGA+TGG | 0.555057 | 1_1:-64355582 | None:intergenic |
| TAGAATGTGAGAGATGGAGA+AGG | 0.558986 | 1_1:+64355767 | Msa0036010:CDS |
| AAAATGTTATGTCAATGCAT+AGG | 0.560427 | 1_1:+64357626 | Msa0036010:CDS |
| CTCGTATCACGATCGATGGA+AGG | 0.562630 | 1_1:+64357764 | Msa0036010:CDS |
| AAATGAAGCTGGTGGATGGA+AGG | 0.564281 | 1_1:+64356435 | Msa0036010:CDS |
| GCAGTACGAGCTAGTCTCAA+AGG | 0.568633 | 1_1:+64356487 | Msa0036010:CDS |
| TGGAGATAGAATGTGAGAGA+TGG | 0.570198 | 1_1:+64355761 | Msa0036010:CDS |
| ACCACCTGTGTTGCTGATAA+CGG | 0.570982 | 1_1:-64357121 | None:intergenic |
| GGATTTGCACCAAAACCATA+GGG | 0.574114 | 1_1:-64353661 | None:intergenic |
| GTGTGACTGTTGTAAACTCT+GGG | 0.576256 | 1_1:+64358074 | Msa0036010:three_prime_UTR |
| ATTTCAGCACTAAATGAAGC+TGG | 0.577109 | 1_1:+64356424 | Msa0036010:CDS |
| TTATCAATTGGAGCTGCATG+TGG | 0.578331 | 1_1:+64355549 | Msa0036010:CDS |
| ATTGGACTATCATTTCCTTG+TGG | 0.584551 | 1_1:+64356231 | Msa0036010:CDS |
| TGTGTACCTTAGTGACCTCA+AGG | 0.585422 | 1_1:+64356519 | Msa0036010:CDS |
| GTATCCACAATATTACTAAG+TGG | 0.588421 | 1_1:-64357597 | None:intergenic |
| CATTTCCTAGAACTTGGTGT+GGG | 0.589574 | 1_1:+64357881 | Msa0036010:CDS |
| AAGCCTCGTATCACGATCGA+TGG | 0.591131 | 1_1:+64357760 | Msa0036010:CDS |
| TCATTTCCTAGAACTTGGTG+TGG | 0.591922 | 1_1:+64357880 | Msa0036010:CDS |
| CCCAATGTATAATGAAAAGG+AGG | 0.596084 | 1_1:+64353682 | Msa0036010:CDS |
| CAGAAGTAGAAGTTCCCAAG+TGG | 0.598985 | 1_1:+64357431 | Msa0036010:CDS |
| TTAAGGAGTGTAATAATACA+AGG | 0.606049 | 1_1:-64357469 | None:intergenic |
| TTAAACACAATAGAATATGG+TGG | 0.610132 | 1_1:+64355741 | Msa0036010:intron |
| TTGGACTAGTTCAAGCTCGA+TGG | 0.612953 | 1_1:+64355977 | Msa0036010:CDS |
| CACATAAAACTTCTTCCACA+TGG | 0.616199 | 1_1:-64357317 | None:intergenic |
| AAAATGTAAATGTGACCACA+TGG | 0.616797 | 1_1:-64357375 | None:intergenic |
| GCTTGAACTAGTCCAACTTG+TGG | 0.622881 | 1_1:-64355970 | None:intergenic |
| CAGCAACACAGGTGGTCATG+TGG | 0.623641 | 1_1:+64357128 | Msa0036010:CDS |
| AGAAGTAGAAGTTCCCAAGT+GGG | 0.627113 | 1_1:+64357432 | Msa0036010:CDS |
| GATCAAGGAATGGGATGGTG+CGG | 0.636879 | 1_1:-64355942 | None:intergenic |
| CCATATCTTCCACTGTTGTG+CGG | 0.638192 | 1_1:-64356459 | None:intergenic |
| AGAGAAACATTATAAATGGG+AGG | 0.640179 | 1_1:+64353598 | Msa0036010:CDS |
| CCTGTGTTGCTGATAACGGT+AGG | 0.640256 | 1_1:-64357117 | None:intergenic |
| ATGGAAGGACCGCACAACAG+TGG | 0.644477 | 1_1:+64356450 | Msa0036010:CDS |
| TATCAATTGGAGCTGCATGT+GGG | 0.644918 | 1_1:+64355550 | Msa0036010:CDS |
| AACCAACTTCCTGTTCCACA+AGG | 0.645217 | 1_1:-64356246 | None:intergenic |
| GAAGTAGAAGTTCCCAAGTG+GGG | 0.649479 | 1_1:+64357433 | Msa0036010:CDS |
| AATAGAAATCATAAGAAACA+AGG | 0.650357 | 1_1:+64357178 | Msa0036010:CDS |
| GCTCTTAAAATAAAATCAGG+AGG | 0.655234 | 1_1:+64357724 | Msa0036010:CDS |
| CTTCCATCGATCGTGATACG+AGG | 0.657335 | 1_1:-64357763 | None:intergenic |
| TTAATGCTGTTGGAACTCCA+AGG | 0.658326 | 1_1:+64357488 | Msa0036010:CDS |
| CCTACCGTTATCAGCAACAC+AGG | 0.662586 | 1_1:+64357117 | Msa0036010:CDS |
| TCAGCACTAAATGAAGCTGG+TGG | 0.663266 | 1_1:+64356427 | Msa0036010:CDS |
| ATAGCACTGATTCTTCCCAA+AGG | 0.669004 | 1_1:-64357939 | None:intergenic |
| TATGTCAATGCATAGGACCA+AGG | 0.675182 | 1_1:+64357633 | Msa0036010:CDS |
| AAATGTAAATGTGACCACAT+GGG | 0.678994 | 1_1:-64357374 | None:intergenic |
| ATATAGACAGCACCCCACTT+GGG | 0.679378 | 1_1:-64357445 | None:intergenic |
| ACCGTTATCAGCAACACAGG+TGG | 0.685287 | 1_1:+64357120 | Msa0036010:CDS |
| CAAGAAATATAAGAGAAACG+TGG | 0.692109 | 1_1:+64358222 | Msa0036010:three_prime_UTR |
| TGATGCAGAAAGTGACCATG+TGG | 0.707458 | 1_1:+64357302 | Msa0036010:intron |
| CCGGAAGATCATAGCCCATG+TGG | 0.731875 | 1_1:+64357360 | Msa0036010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATTATAT+GGG | - | chr1_1:64355065-64355084 | None:intergenic | 0.0% |
| !! | ATATATATATATATATTATA+TGG | - | chr1_1:64355066-64355085 | None:intergenic | 0.0% |
| !! | GTTATATGATATATATATAT+AGG | + | chr1_1:64353936-64353955 | Msa0036010:intron | 10.0% |
| !! | TATATGATATATATATATAG+GGG | + | chr1_1:64353938-64353957 | Msa0036010:intron | 10.0% |
| !!! | AGCTTAATATATTTTAATAA+TGG | - | chr1_1:64354155-64354174 | None:intergenic | 10.0% |
| !! | TTGAATTTAAGAAAAAAATA+AGG | + | chr1_1:64354718-64354737 | Msa0036010:intron | 10.0% |
| !! | TGAATTTAAGAAAAAAATAA+GGG | + | chr1_1:64354719-64354738 | Msa0036010:intron | 10.0% |
| !!! | GCTTAAATATATTTTAATAA+TGG | + | chr1_1:64354829-64354848 | Msa0036010:intron | 10.0% |
| !! | TATATATATATATTATATGG+GGG | - | chr1_1:64355063-64355082 | None:intergenic | 10.0% |
| !!! | AACATGATTAATTTTAATAA+AGG | + | chr1_1:64356674-64356693 | Msa0036010:intron | 10.0% |
| !!! | AGTTATTTTATTTTAGTAAA+TGG | - | chr1_1:64357008-64357027 | None:intergenic | 10.0% |
| !!! | TAACACTAGTTTTTTTTTAT+AGG | - | chr1_1:64353920-64353939 | None:intergenic | 15.0% |
| !! | ATATGATATATATATATAGG+GGG | + | chr1_1:64353939-64353958 | Msa0036010:intron | 15.0% |
| !! | AATAATCATTACTTATGATA+AGG | - | chr1_1:64354108-64354127 | None:intergenic | 15.0% |
| !!! | TCATAGTTTTTTTTCTTTTA+TGG | - | chr1_1:64354179-64354198 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGTTACTTAACTT+TGG | + | chr1_1:64354334-64354353 | Msa0036010:intron | 15.0% |
| !! | AAAAAATAAGGGAAAAATAA+AGG | + | chr1_1:64354730-64354749 | Msa0036010:intron | 15.0% |
| !! | CAAATAAAAAAAAAATGCTA+CGG | - | chr1_1:64354778-64354797 | None:intergenic | 15.0% |
| !! | AAAGAATAAAAAGCAAAAAT+GGG | - | chr1_1:64355166-64355185 | None:intergenic | 15.0% |
| !! | TAAAGCAAAAAAAATAGTAT+AGG | - | chr1_1:64355218-64355237 | None:intergenic | 15.0% |
| !! | ATTGATAAAAAATTAGTTCA+TGG | - | chr1_1:64355479-64355498 | None:intergenic | 15.0% |
| !!! | TCAATAGTTAAAAAGTTTTA+TGG | + | chr1_1:64355494-64355513 | Msa0036010:intron | 15.0% |
| !! | TATTTAAACACAATAGAATA+TGG | + | chr1_1:64355738-64355757 | Msa0036010:intron | 15.0% |
| !! | AACATTAATCTCAATTAATT+AGG | - | chr1_1:64356036-64356055 | None:intergenic | 15.0% |
| !!! | AATTTTAATATGTGTATGTT+TGG | + | chr1_1:64356767-64356786 | Msa0036010:intron | 15.0% |
| !! | ACTAAAATAAAATAACTAGT+TGG | + | chr1_1:64357011-64357030 | Msa0036010:intron | 15.0% |
| !! | AATAATTATGATGATTTGAT+TGG | - | chr1_1:64357242-64357261 | None:intergenic | 15.0% |
| !!! | TCAAATCATTTTTTATCAAT+AGG | - | chr1_1:64358118-64358137 | None:intergenic | 15.0% |
| !! | TTCAAGTATTACAAAATAAT+TGG | - | chr1_1:64358181-64358200 | None:intergenic | 15.0% |
| !! | TTAACCAAATGAATTTCATT+TGG | + | chr1_1:64353435-64353454 | Msa0036010:CDS | 20.0% |
| !!! | TTTTGTAGAAAGAGTTTATA+TGG | + | chr1_1:64353535-64353554 | Msa0036010:CDS | 20.0% |
| !! | TTTGTAGAAAGAGTTTATAT+GGG | + | chr1_1:64353536-64353555 | Msa0036010:CDS | 20.0% |
| !! | TTTAATGTAAACAAACAAGA+TGG | - | chr1_1:64353810-64353829 | None:intergenic | 20.0% |
| !! | TAATTTCAAAAAACAGAAGT+AGG | + | chr1_1:64353831-64353850 | Msa0036010:intron | 20.0% |
| !!! | TTTTATAGGAAAACACTTAA+TGG | - | chr1_1:64353906-64353925 | None:intergenic | 20.0% |
| !! | AATTAGTGATTCAAAAGTTA+AGG | - | chr1_1:64354317-64354336 | None:intergenic | 20.0% |
| !! | CAGAAAATAATATAATGCTT+AGG | - | chr1_1:64354474-64354493 | None:intergenic | 20.0% |
| !!! | CTAAGCATTATATTATTTTC+TGG | + | chr1_1:64354472-64354491 | Msa0036010:intron | 20.0% |
| !!! | TTTCTAGAAATACATTTCTT+AGG | - | chr1_1:64354511-64354530 | None:intergenic | 20.0% |
| !! | AATAATCATTACTTATGACA+AGG | + | chr1_1:64354893-64354912 | Msa0036010:intron | 20.0% |
| !! | CAAAGAATAAAAAGCAAAAA+TGG | - | chr1_1:64355167-64355186 | None:intergenic | 20.0% |
| !! | GAATATTTATTTGATCTAGT+AGG | + | chr1_1:64355309-64355328 | Msa0036010:intron | 20.0% |
| !! | TGAATAATAATTCTATCAGA+TGG | - | chr1_1:64355585-64355604 | None:intergenic | 20.0% |
| !! | TAAACATAAAGTATGAGATA+AGG | + | chr1_1:64355797-64355816 | Msa0036010:CDS | 20.0% |
| !! | AAACATAAAGTATGAGATAA+GGG | + | chr1_1:64355798-64355817 | Msa0036010:CDS | 20.0% |
| !! | AATAGAAATCATAAGAAACA+AGG | + | chr1_1:64357178-64357197 | Msa0036010:CDS | 20.0% |
| !! | AAATATAGAGAAAATTGCAA+GGG | - | chr1_1:64357212-64357231 | None:intergenic | 20.0% |
| !! | TAAATATAGAGAAAATTGCA+AGG | - | chr1_1:64357213-64357232 | None:intergenic | 20.0% |
| !!! | AATTATTGTACATTTTCTCT+TGG | + | chr1_1:64357255-64357274 | Msa0036010:intron | 20.0% |
| !!! | TATATAGTTTTTTCTTTGTC+CGG | + | chr1_1:64357341-64357360 | Msa0036010:CDS | 20.0% |
| !!! | CTGGTTTACAAATTAAATTT+TGG | - | chr1_1:64357534-64357553 | None:intergenic | 20.0% |
| !! | ATTGTCTTTCTTAAGTTGTT+TGG | + | chr1_1:64353566-64353585 | Msa0036010:CDS | 25.0% |
| ! | AACCAGAGAAACATTATAAA+TGG | + | chr1_1:64353594-64353613 | Msa0036010:CDS | 25.0% |
| ! | ACCAGAGAAACATTATAAAT+GGG | + | chr1_1:64353595-64353614 | Msa0036010:CDS | 25.0% |
| ! | AATCCCAATGTATAATGAAA+AGG | + | chr1_1:64353679-64353698 | Msa0036010:CDS | 25.0% |
| !!! | TGTTTTTGAAGAAAGAGAAA+TGG | - | chr1_1:64354963-64354982 | None:intergenic | 25.0% |
| !!! | AATGTATTTCTAGAAAACAG+AGG | + | chr1_1:64354515-64354534 | Msa0036010:intron | 25.0% |
| ! | ATGTCGTAATAGTAGTATTT+AGG | + | chr1_1:64354687-64354706 | Msa0036010:intron | 25.0% |
| !!! | AGACAGTTTTTTTTCTTCTA+TGG | + | chr1_1:64354804-64354823 | Msa0036010:intron | 25.0% |
| ! | TCTTCAAAAACAACTAAATG+TGG | - | chr1_1:64354955-64354974 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAAGAAAGAGAAA+TGG | + | chr1_1:64354963-64354982 | Msa0036010:intron | 25.0% |
| !!! | AAGAAAGAGAAATGGTTTTT+TGG | + | chr1_1:64354971-64354990 | Msa0036010:intron | 25.0% |
| ! | ACACACACTTAAAATATAGT+TGG | - | chr1_1:64353972-64353991 | None:intergenic | 25.0% |
| ! | GATTTCAAAACCTTAATGAT+TGG | - | chr1_1:64355630-64355649 | None:intergenic | 25.0% |
| ! | GTTAGTTAACTTTATCAACA+TGG | - | chr1_1:64355656-64355675 | None:intergenic | 25.0% |
| !! | ATTTTCTACATTATCTTGCA+TGG | + | chr1_1:64355681-64355700 | Msa0036010:intron | 25.0% |
| ! | TTAAACACAATAGAATATGG+TGG | + | chr1_1:64355741-64355760 | Msa0036010:intron | 25.0% |
| ! | ATTAATTAGGAGTTTCATGA+AGG | - | chr1_1:64356023-64356042 | None:intergenic | 25.0% |
| ! | AAAGTTACACTAACATTAGA+TGG | + | chr1_1:64356134-64356153 | Msa0036010:intron | 25.0% |
| ! | TTAAATTCACAAATACAGCT+TGG | + | chr1_1:64356309-64356328 | Msa0036010:intron | 25.0% |
| ! | ATAAGATTGAAAATACCTTG+AGG | - | chr1_1:64356537-64356556 | None:intergenic | 25.0% |
| !!! | AATTTTAATAAAGGAGTACG+TGG | + | chr1_1:64356683-64356702 | Msa0036010:intron | 25.0% |
| !!! | ATTTTAATAAAGGAGTACGT+GGG | + | chr1_1:64356684-64356703 | Msa0036010:intron | 25.0% |
| !!! | TAGCTTTTAGAAAATCATTG+TGG | + | chr1_1:64356852-64356871 | Msa0036010:intron | 25.0% |
| !! | TTAAGGAGTGTAATAATACA+AGG | - | chr1_1:64357472-64357491 | None:intergenic | 25.0% |
| ! | CATTATCAAAATTCTTACCT+TGG | - | chr1_1:64357508-64357527 | None:intergenic | 25.0% |
| ! | AGTACATGAACTTGATTATA+GGG | - | chr1_1:64357561-64357580 | None:intergenic | 25.0% |
| ! | AAGTACATGAACTTGATTAT+AGG | - | chr1_1:64357562-64357581 | None:intergenic | 25.0% |
| !!! | AGTTCATGTACTTTTTTTGT+AGG | + | chr1_1:64357569-64357588 | Msa0036010:intron | 25.0% |
| ! | AAAATGTTATGTCAATGCAT+AGG | + | chr1_1:64357626-64357645 | Msa0036010:CDS | 25.0% |
| ! | GATGCTCTTAAAATAAAATC+AGG | + | chr1_1:64357721-64357740 | Msa0036010:CDS | 25.0% |
| ! | GTTTATTAATTACCCTTTCA+AGG | + | chr1_1:64357791-64357810 | Msa0036010:intron | 25.0% |
| !! | AGTTCTTTTGTATAGTGATT+GGG | - | chr1_1:64358144-64358163 | None:intergenic | 25.0% |
| !! | TAGTTCTTTTGTATAGTGAT+TGG | - | chr1_1:64358145-64358164 | None:intergenic | 25.0% |
| ! | AGATTTGAAAGTGTGCATTA+TGG | + | chr1_1:64353407-64353426 | Msa0036010:CDS | 30.0% |
| GTTGCCAAATGAAATTCATT+TGG | - | chr1_1:64353442-64353461 | None:intergenic | 30.0% | |
| TCCCATTTATAATGTTTCTC+TGG | - | chr1_1:64353599-64353618 | None:intergenic | 30.0% | |
| AGAGAAACATTATAAATGGG+AGG | + | chr1_1:64353598-64353617 | Msa0036010:CDS | 30.0% | |
| ! | CCTCCTTTTCATTATACATT+GGG | - | chr1_1:64353685-64353704 | None:intergenic | 30.0% |
| ! | ACCTCCTTTTCATTATACAT+TGG | - | chr1_1:64353686-64353705 | None:intergenic | 30.0% |
| AAAAAACAGAAGTAGGTTGT+TGG | + | chr1_1:64353838-64353857 | Msa0036010:intron | 30.0% | |
| CATTACTTATGATAAGGAGA+GGG | - | chr1_1:64354102-64354121 | None:intergenic | 30.0% | |
| TCATTACTTATGATAAGGAG+AGG | - | chr1_1:64354103-64354122 | None:intergenic | 30.0% | |
| ATAGTTTGAATCTCATTGTC+TGG | + | chr1_1:64354290-64354309 | Msa0036010:intron | 30.0% | |
| AATATCAGCAAATGGTGAAT+TGG | - | chr1_1:64354433-64354452 | None:intergenic | 30.0% | |
| TACCATAGTACTATTGGTAA+TGG | - | chr1_1:64354640-64354659 | None:intergenic | 30.0% | |
| GATTACTACCATAGTACTAT+TGG | - | chr1_1:64354646-64354665 | None:intergenic | 30.0% | |
| AAATGCTACGGTGAATTTAA+AGG | - | chr1_1:64354766-64354785 | None:intergenic | 30.0% | |
| CGAGAATCAAAAGCAAAAAA+TGG | + | chr1_1:64355389-64355408 | Msa0036010:intron | 30.0% | |
| CAGGTGTATCAATTATCAAT+TGG | + | chr1_1:64355537-64355556 | Msa0036010:intron | 30.0% | |
| GAGATAAGGGAAAATAGAAA+TGG | + | chr1_1:64355811-64355830 | Msa0036010:CDS | 30.0% | |
| AATAGAAATGGTTACAAAGC+TGG | + | chr1_1:64355823-64355842 | Msa0036010:CDS | 30.0% | |
| TTGAAAATCAGCATCAAAGA+TGG | - | chr1_1:64355902-64355921 | None:intergenic | 30.0% | |
| CACATAAACTCAATCAGATA+TGG | + | chr1_1:64356082-64356101 | Msa0036010:intron | 30.0% | |
| !!! | GTGTAACTTTTTTTTACCCA+CGG | - | chr1_1:64356124-64356143 | None:intergenic | 30.0% |
| ATTAACTGCAAGCATTAAGA+AGG | - | chr1_1:64356173-64356192 | None:intergenic | 30.0% | |
| CATCATCATCTAATATCACA+TGG | - | chr1_1:64356366-64356385 | None:intergenic | 30.0% | |
| CATGTGATATTAGATGATGA+TGG | + | chr1_1:64356364-64356383 | Msa0036010:intron | 30.0% | |
| !! | ATTAGATGATGATGGTGATA+TGG | + | chr1_1:64356372-64356391 | Msa0036010:intron | 30.0% |
| AGCTAAAAAAAAAAACCACG+TGG | + | chr1_1:64356708-64356727 | Msa0036010:intron | 30.0% | |
| TGTATGTTTGGTATTACGAT+GGG | + | chr1_1:64356779-64356798 | Msa0036010:intron | 30.0% | |
| TAAACACTATAGCCTATGTT+TGG | - | chr1_1:64356908-64356927 | None:intergenic | 30.0% | |
| AAATGTAAATGTGACCACAT+GGG | - | chr1_1:64357377-64357396 | None:intergenic | 30.0% | |
| AAAATGTAAATGTGACCACA+TGG | - | chr1_1:64357378-64357397 | None:intergenic | 30.0% | |
| AACTTGATTATAGGGAAAAC+TGG | - | chr1_1:64357553-64357572 | None:intergenic | 30.0% | |
| CATTCCACTTAGTAATATTG+TGG | + | chr1_1:64357593-64357612 | Msa0036010:CDS | 30.0% | |
| GTATCCACAATATTACTAAG+TGG | - | chr1_1:64357600-64357619 | None:intergenic | 30.0% | |
| ! | AACAGTTATAGGTTTGTTTG+AGG | + | chr1_1:64357657-64357676 | Msa0036010:CDS | 30.0% |
| GCTCTTAAAATAAAATCAGG+AGG | + | chr1_1:64357724-64357743 | Msa0036010:CDS | 30.0% | |
| TATTAATTACCCTTTCAAGG+AGG | + | chr1_1:64357794-64357813 | Msa0036010:intron | 30.0% | |
| TCAACAAACAAGTAAGTACA+AGG | - | chr1_1:64357846-64357865 | None:intergenic | 30.0% | |
| ! | TTGTTTGTTGATGTTGAAAC+AGG | + | chr1_1:64357855-64357874 | Msa0036010:intron | 30.0% |
| CAAGAAATATAAGAGAAACG+TGG | + | chr1_1:64358222-64358241 | Msa0036010:three_prime_UTR | 30.0% | |
| ATTTCATTTGGCAACAAGCT+AGG | + | chr1_1:64353447-64353466 | Msa0036010:CDS | 35.0% | |
| TTTCATTTGGCAACAAGCTA+GGG | + | chr1_1:64353448-64353467 | Msa0036010:CDS | 35.0% | |
| TTCAACACTGGAACTATAAG+TGG | - | chr1_1:64353476-64353495 | None:intergenic | 35.0% | |
| ! | AGTTCCAGTGTTGAAATTGT+TGG | + | chr1_1:64353481-64353500 | Msa0036010:CDS | 35.0% |
| ACTACCAACAATTTCAACAC+TGG | - | chr1_1:64353488-64353507 | None:intergenic | 35.0% | |
| !! | TTATAAATGGGAGGCACTTA+AGG | + | chr1_1:64353607-64353626 | Msa0036010:CDS | 35.0% |
| CCCAATGTATAATGAAAAGG+AGG | + | chr1_1:64353682-64353701 | Msa0036010:CDS | 35.0% | |
| !! | CACCATTTGCTGATATTTTC+TGG | + | chr1_1:64354436-64354455 | Msa0036010:intron | 35.0% |
| GTCCAGAAAATATCAGCAAA+TGG | - | chr1_1:64354441-64354460 | None:intergenic | 35.0% | |
| ACAAAACAGTCCATGTAACA+TGG | + | chr1_1:64354601-64354620 | Msa0036010:intron | 35.0% | |
| TGTGCATTTACCATGTTACA+TGG | - | chr1_1:64354614-64354633 | None:intergenic | 35.0% | |
| GTCCATTACCAATAGTACTA+TGG | + | chr1_1:64354635-64354654 | Msa0036010:intron | 35.0% | |
| CTCAACAGATCCAATCATTA+AGG | + | chr1_1:64355617-64355636 | Msa0036010:CDS | 35.0% | |
| CGGTAAAGAAAGTTAGATTC+AGG | - | chr1_1:64355925-64355944 | None:intergenic | 35.0% | |
| !! | ATTTTGATCAAGGAATGGGA+TGG | - | chr1_1:64355950-64355969 | None:intergenic | 35.0% |
| !! | GTGGATTTTGATCAAGGAAT+GGG | - | chr1_1:64355954-64355973 | None:intergenic | 35.0% |
| !! | TGTGGATTTTGATCAAGGAA+TGG | - | chr1_1:64355955-64355974 | None:intergenic | 35.0% |
| !! | CAACTTGTGGATTTTGATCA+AGG | - | chr1_1:64355960-64355979 | None:intergenic | 35.0% |
| CTTGATCAAAATCCACAAGT+TGG | + | chr1_1:64355958-64355977 | Msa0036010:CDS | 35.0% | |
| ATTGGACTATCATTTCCTTG+TGG | + | chr1_1:64356231-64356250 | Msa0036010:CDS | 35.0% | |
| TCCATAACTCATGCTTTCTT+TGG | + | chr1_1:64356268-64356287 | Msa0036010:CDS | 35.0% | |
| ! | ACCAAAGAAAGCATGAGTTA+TGG | - | chr1_1:64356272-64356291 | None:intergenic | 35.0% |
| ! | CATGCTTTCTTTGGTTTCAA+TGG | + | chr1_1:64356277-64356296 | Msa0036010:CDS | 35.0% |
| ATTTCAGCACTAAATGAAGC+TGG | + | chr1_1:64356424-64356443 | Msa0036010:CDS | 35.0% | |
| AAAATACCTTGAGGTCACTA+AGG | - | chr1_1:64356528-64356547 | None:intergenic | 35.0% | |
| AGAAATAACTATGATCCACG+TGG | - | chr1_1:64356726-64356745 | None:intergenic | 35.0% | |
| GTGTATGTTTGGTATTACGA+TGG | + | chr1_1:64356778-64356797 | Msa0036010:intron | 35.0% | |
| ATAGCCTATGTTTGGTATCA+CGG | - | chr1_1:64356900-64356919 | None:intergenic | 35.0% | |
| !! | TTTTCCTGAAGAGATTTGCT+GGG | - | chr1_1:64357154-64357173 | None:intergenic | 35.0% |
| ! | ATTTTCCTGAAGAGATTTGC+TGG | - | chr1_1:64357155-64357174 | None:intergenic | 35.0% |
| AGCAAATCTCTTCAGGAAAA+TGG | + | chr1_1:64357154-64357173 | Msa0036010:CDS | 35.0% | |
| CACATAAAACTTCTTCCACA+TGG | - | chr1_1:64357320-64357339 | None:intergenic | 35.0% | |
| ATTACACTCCTTAATGCTGT+TGG | + | chr1_1:64357478-64357497 | Msa0036010:CDS | 35.0% | |
| ATGGGTAGTTACTGAGAAAT+TGG | + | chr1_1:64357696-64357715 | Msa0036010:CDS | 35.0% | |
| TGGGTAGTTACTGAGAAATT+GGG | + | chr1_1:64357697-64357716 | Msa0036010:CDS | 35.0% | |
| ACATACTATCCTCCTTGAAA+GGG | - | chr1_1:64357806-64357825 | None:intergenic | 35.0% | |
| AACATACTATCCTCCTTGAA+AGG | - | chr1_1:64357807-64357826 | None:intergenic | 35.0% | |
| AGGATTCATTTCCTAGAACT+TGG | + | chr1_1:64357875-64357894 | Msa0036010:intron | 35.0% | |
| ATCTATTGCCTTCTTTGTTG+TGG | + | chr1_1:64357979-64357998 | Msa0036010:CDS | 35.0% | |
| ! | TCTATTGCCTTCTTTGTTGT+GGG | + | chr1_1:64357980-64357999 | Msa0036010:CDS | 35.0% |
| AGTTGTTCCTCTTAAGATCT+GGG | - | chr1_1:64358031-64358050 | None:intergenic | 35.0% | |
| GATGAAAGCTTATCCATCTC+AGG | - | chr1_1:64353380-64353399 | None:intergenic | 40.0% | |
| AAGGATGATGATATCGAGCT+TGG | + | chr1_1:64353626-64353645 | Msa0036010:CDS | 40.0% | |
| GGATTTGCACCAAAACCATA+GGG | - | chr1_1:64353664-64353683 | None:intergenic | 40.0% | |
| ! | GCATCATGCACATTTTCACA+TGG | + | chr1_1:64354004-64354023 | Msa0036010:intron | 40.0% |
| TCTAGAAAACAGAGGCAACA+TGG | + | chr1_1:64354523-64354542 | Msa0036010:intron | 40.0% | |
| ! | CGACATTTTGTAAGCACTTG+TGG | - | chr1_1:64354673-64354692 | None:intergenic | 40.0% |
| ! | GCATCATGCACATTTTCACA+TGG | - | chr1_1:64354004-64354023 | None:intergenic | 40.0% |
| ATTGATACACCTGCAAGCAA+TGG | - | chr1_1:64355530-64355549 | None:intergenic | 40.0% | |
| TTATCAATTGGAGCTGCATG+TGG | + | chr1_1:64355549-64355568 | Msa0036010:CDS | 40.0% | |
| TATCAATTGGAGCTGCATGT+GGG | + | chr1_1:64355550-64355569 | Msa0036010:CDS | 40.0% | |
| TGGAGATAGAATGTGAGAGA+TGG | + | chr1_1:64355761-64355780 | Msa0036010:CDS | 40.0% | |
| TAGAATGTGAGAGATGGAGA+AGG | + | chr1_1:64355767-64355786 | Msa0036010:CDS | 40.0% | |
| AAAGCTGGTGCTCTTAAAGA+AGG | + | chr1_1:64355838-64355857 | Msa0036010:CDS | 40.0% | |
| TGAGATTTGATGAGATCCGT+GGG | + | chr1_1:64356105-64356124 | Msa0036010:intron | 40.0% | |
| GAGAATGCAAGAGATGTCAT+TGG | + | chr1_1:64356213-64356232 | Msa0036010:CDS | 40.0% | |
| CTATCATTTCCTTGTGGAAC+AGG | + | chr1_1:64356237-64356256 | Msa0036010:CDS | 40.0% | |
| TCGTAGCAACCAATTAAGAC+TGG | + | chr1_1:64356560-64356579 | Msa0036010:intron | 40.0% | |
| CGTAGCAACCAATTAAGACT+GGG | + | chr1_1:64356561-64356580 | Msa0036010:intron | 40.0% | |
| TCTACCGTGATACCAAACAT+AGG | + | chr1_1:64356893-64356912 | Msa0036010:intron | 40.0% | |
| ! | TCTGGAACTAAAACAGTTGC+AGG | - | chr1_1:64357415-64357434 | None:intergenic | 40.0% |
| AGAAGTAGAAGTTCCCAAGT+GGG | + | chr1_1:64357432-64357451 | Msa0036010:CDS | 40.0% | |
| TTGGAGTTCCAACAGCATTA+AGG | - | chr1_1:64357489-64357508 | None:intergenic | 40.0% | |
| TTAATGCTGTTGGAACTCCA+AGG | + | chr1_1:64357488-64357507 | Msa0036010:CDS | 40.0% | |
| TATGTCAATGCATAGGACCA+AGG | + | chr1_1:64357633-64357652 | Msa0036010:CDS | 40.0% | |
| CAAACCTATAACTGTTGCCT+TGG | - | chr1_1:64357653-64357672 | None:intergenic | 40.0% | |
| ! | GTTATAGGTTTGTTTGAGGC+TGG | + | chr1_1:64357661-64357680 | Msa0036010:CDS | 40.0% |
| ! | TCATTTCCTAGAACTTGGTG+TGG | + | chr1_1:64357880-64357899 | Msa0036010:CDS | 40.0% |
| !! | CATTTCCTAGAACTTGGTGT+GGG | + | chr1_1:64357881-64357900 | Msa0036010:CDS | 40.0% |
| CATAGCATCCACACAAAAAG+AGG | - | chr1_1:64357913-64357932 | None:intergenic | 40.0% | |
| GATGCTATGATCTTGCCTTT+GGG | + | chr1_1:64357924-64357943 | Msa0036010:CDS | 40.0% | |
| !! | ATAGCACTGATTCTTCCCAA+AGG | - | chr1_1:64357942-64357961 | None:intergenic | 40.0% |
| CAAAGAAGGCAATAGATTGC+AGG | - | chr1_1:64357976-64357995 | None:intergenic | 40.0% | |
| ! | CTATTGCCTTCTTTGTTGTG+GGG | + | chr1_1:64357981-64358000 | Msa0036010:CDS | 40.0% |
| ! | TATTGCCTTCTTTGTTGTGG+GGG | + | chr1_1:64357982-64358001 | Msa0036010:CDS | 40.0% |
| CTATGTTCCCAGATCTTAAG+AGG | + | chr1_1:64358021-64358040 | Msa0036010:exon | 40.0% | |
| GAGTTGTTCCTCTTAAGATC+TGG | - | chr1_1:64358032-64358051 | None:intergenic | 40.0% | |
| GAACAACTCACTCTTGCATA+TGG | + | chr1_1:64358043-64358062 | Msa0036010:three_prime_UTR | 40.0% | |
| TGTGTGACTGTTGTAAACTC+TGG | + | chr1_1:64358073-64358092 | Msa0036010:three_prime_UTR | 40.0% | |
| GTGTGACTGTTGTAAACTCT+GGG | + | chr1_1:64358074-64358093 | Msa0036010:three_prime_UTR | 40.0% | |
| TGGAAACTCTGCTTTCCCTA+TGG | + | chr1_1:64353646-64353665 | Msa0036010:CDS | 45.0% | |
| ! | CTCTGCTTTCCCTATGGTTT+TGG | + | chr1_1:64353652-64353671 | Msa0036010:CDS | 45.0% |
| GGGATTTGCACCAAAACCAT+AGG | - | chr1_1:64353665-64353684 | None:intergenic | 45.0% | |
| TGTTGGCACAATATACGTCG+TGG | + | chr1_1:64353855-64353874 | Msa0036010:intron | 45.0% | |
| CAGCAAATGGTGAATTGGTG+AGG | - | chr1_1:64354428-64354447 | None:intergenic | 45.0% | |
| CTGCAAGCAATGGAACAATG+TGG | - | chr1_1:64355520-64355539 | None:intergenic | 45.0% | |
| CACATTGTTCCATTGCTTGC+AGG | + | chr1_1:64355518-64355537 | Msa0036010:intron | 45.0% | |
| TGTGAGAGATGGAGAAGGAA+AGG | + | chr1_1:64355772-64355791 | Msa0036010:CDS | 45.0% | |
| GCTTGAACTAGTCCAACTTG+TGG | - | chr1_1:64355973-64355992 | None:intergenic | 45.0% | |
| !! | TTGGACTAGTTCAAGCTCGA+TGG | + | chr1_1:64355977-64355996 | Msa0036010:CDS | 45.0% |
| GTTCAAGCTCGATGGCAATT+CGG | + | chr1_1:64355985-64356004 | Msa0036010:CDS | 45.0% | |
| GTGAGATTTGATGAGATCCG+TGG | + | chr1_1:64356104-64356123 | Msa0036010:intron | 45.0% | |
| TTCCTTGTGGAACAGGAAGT+TGG | + | chr1_1:64356244-64356263 | Msa0036010:CDS | 45.0% | |
| AACCAACTTCCTGTTCCACA+AGG | - | chr1_1:64356249-64356268 | None:intergenic | 45.0% | |
| GATGGTGATATGGTTCATGC+AGG | + | chr1_1:64356382-64356401 | Msa0036010:intron | 45.0% | |
| TCAGCACTAAATGAAGCTGG+TGG | + | chr1_1:64356427-64356446 | Msa0036010:CDS | 45.0% | |
| CACTAAATGAAGCTGGTGGA+TGG | + | chr1_1:64356431-64356450 | Msa0036010:CDS | 45.0% | |
| ! | AAATGAAGCTGGTGGATGGA+AGG | + | chr1_1:64356435-64356454 | Msa0036010:CDS | 45.0% |
| CCATATCTTCCACTGTTGTG+CGG | - | chr1_1:64356462-64356481 | None:intergenic | 45.0% | |
| TGTGTACCTTAGTGACCTCA+AGG | + | chr1_1:64356519-64356538 | Msa0036010:CDS | 45.0% | |
| CCAATTAAGACTGGGTCTAG+CGG | + | chr1_1:64356569-64356588 | Msa0036010:intron | 45.0% | |
| !! | CGGTAGGCTTTGAATGTACT+TGG | - | chr1_1:64357104-64357123 | None:intergenic | 45.0% |
| ! | ACCACCTGTGTTGCTGATAA+CGG | - | chr1_1:64357124-64357143 | None:intergenic | 45.0% |
| TGATGCAGAAAGTGACCATG+TGG | + | chr1_1:64357302-64357321 | Msa0036010:intron | 45.0% | |
| CACTTGGGAACTTCTACTTC+TGG | - | chr1_1:64357433-64357452 | None:intergenic | 45.0% | |
| CAGAAGTAGAAGTTCCCAAG+TGG | + | chr1_1:64357431-64357450 | Msa0036010:CDS | 45.0% | |
| GAAGTAGAAGTTCCCAAGTG+GGG | + | chr1_1:64357433-64357452 | Msa0036010:CDS | 45.0% | |
| ATATAGACAGCACCCCACTT+GGG | - | chr1_1:64357448-64357467 | None:intergenic | 45.0% | |
| TATATAGACAGCACCCCACT+TGG | - | chr1_1:64357449-64357468 | None:intergenic | 45.0% | |
| AGGACCAAGGCAACAGTTAT+AGG | + | chr1_1:64357646-64357665 | Msa0036010:CDS | 45.0% | |
| ! | TAGGTTTGTTTGAGGCTGGT+AGG | + | chr1_1:64357665-64357684 | Msa0036010:CDS | 45.0% |
| ! | AGGTTTGTTTGAGGCTGGTA+GGG | + | chr1_1:64357666-64357685 | Msa0036010:CDS | 45.0% |
| AGGCTGGTAGGGTAAATGAA+TGG | + | chr1_1:64357677-64357696 | Msa0036010:CDS | 45.0% | |
| GGCTGGTAGGGTAAATGAAT+GGG | + | chr1_1:64357678-64357697 | Msa0036010:CDS | 45.0% | |
| CAAGGAGGATAGTATGTTGC+TGG | + | chr1_1:64357809-64357828 | Msa0036010:intron | 45.0% | |
| GCATCCACACAAAAAGAGGT+AGG | - | chr1_1:64357909-64357928 | None:intergenic | 45.0% | |
| GGATGCTATGATCTTGCCTT+TGG | + | chr1_1:64357923-64357942 | Msa0036010:CDS | 45.0% | |
| !! | CTCTGGGATATCATCGAGTT+CGG | + | chr1_1:64358090-64358109 | Msa0036010:three_prime_UTR | 45.0% |
| !! | TTATATGATATATATATATA+GGG | + | chr1_1:64353937-64353956 | Msa0036010:intron | 5.0% |
| !! | ATATATATATATATTATATG+GGG | - | chr1_1:64355064-64355083 | None:intergenic | 5.0% |
| !! | TCTATTATTTAAATAAATTT+AGG | + | chr1_1:64357064-64357083 | Msa0036010:intron | 5.0% |
| GACACGCACGAGTAATTACG+TGG | + | chr1_1:64353782-64353801 | Msa0036010:intron | 50.0% | |
| ! | GAGCTGCATGTGGGTTATCA+TGG | + | chr1_1:64355559-64355578 | Msa0036010:CDS | 50.0% |
| GATCAAGGAATGGGATGGTG+CGG | - | chr1_1:64355945-64355964 | None:intergenic | 50.0% | |
| ATGGTTCATGCAGGTACAGC+TGG | + | chr1_1:64356391-64356410 | Msa0036010:intron | 50.0% | |
| ATGCAGGTACAGCTGGTGTT+TGG | + | chr1_1:64356398-64356417 | Msa0036010:intron | 50.0% | |
| CCGCACAACAGTGGAAGATA+TGG | + | chr1_1:64356459-64356478 | Msa0036010:CDS | 50.0% | |
| ! | GCAGTACGAGCTAGTCTCAA+AGG | + | chr1_1:64356487-64356506 | Msa0036010:CDS | 50.0% |
| ! | TACGAGCTAGTCTCAAAGGC+TGG | + | chr1_1:64356491-64356510 | Msa0036010:CDS | 50.0% |
| CCGCTAGACCCAGTCTTAAT+TGG | - | chr1_1:64356572-64356591 | None:intergenic | 50.0% | |
| !! | CCTGTGTTGCTGATAACGGT+AGG | - | chr1_1:64357120-64357139 | None:intergenic | 50.0% |
| CCTACCGTTATCAGCAACAC+AGG | + | chr1_1:64357117-64357136 | Msa0036010:CDS | 50.0% | |
| ACCGTTATCAGCAACACAGG+TGG | + | chr1_1:64357120-64357139 | Msa0036010:CDS | 50.0% | |
| ! | CCACATGGGCTATGATCTTC+CGG | - | chr1_1:64357363-64357382 | None:intergenic | 50.0% |
| AAGCCTCGTATCACGATCGA+TGG | + | chr1_1:64357760-64357779 | Msa0036010:CDS | 50.0% | |
| CTTCCATCGATCGTGATACG+AGG | - | chr1_1:64357766-64357785 | None:intergenic | 50.0% | |
| CTCGTATCACGATCGATGGA+AGG | + | chr1_1:64357764-64357783 | Msa0036010:CDS | 50.0% | |
| ! | GGAGCCTACCTCTTTTTGTG+TGG | + | chr1_1:64357902-64357921 | Msa0036010:CDS | 50.0% |
| TTACTCGTGCGTGTCGTGTG+TGG | - | chr1_1:64353777-64353796 | None:intergenic | 55.0% | |
| ATGGAAGGACCGCACAACAG+TGG | + | chr1_1:64356450-64356469 | Msa0036010:CDS | 55.0% | |
| CAGCAACACAGGTGGTCATG+TGG | + | chr1_1:64357128-64357147 | Msa0036010:CDS | 55.0% | |
| GTGGCCCAGCAAATCTCTTC+AGG | + | chr1_1:64357147-64357166 | Msa0036010:CDS | 55.0% | |
| CCGGAAGATCATAGCCCATG+TGG | + | chr1_1:64357360-64357379 | Msa0036010:CDS | 55.0% | |
| AGGCTCCCACACCAAGTTCT+AGG | - | chr1_1:64357889-64357908 | None:intergenic | 55.0% | |
| ! | GCCTTCTTTGTTGTGGGGGT+TGG | + | chr1_1:64357986-64358005 | Msa0036010:CDS | 55.0% |
| GCCAACCCCCACAACAAAGA+AGG | - | chr1_1:64357990-64358009 | None:intergenic | 55.0% | |
| !! | GTTGTGGGGGTTGGCTATGT+TGG | + | chr1_1:64357995-64358014 | Msa0036010:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64353372 | 64358281 | 64353372 | ID=Msa0036010;Name=Msa0036010 |
| chr1_1 | mRNA | 64353372 | 64358281 | 64353372 | ID=Msa0036010-mRNA-1;Parent=Msa0036010;Name=Msa0036010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=11|1|1|1|1|1|9|242|530 |
| chr1_1 | exon | 64353372 | 64353703 | 64353372 | ID=Msa0036010-mRNA-1:exon:20592;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64355540 | 64355638 | 64355540 | ID=Msa0036010-mRNA-1:exon:20593;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64355754 | 64356006 | 64355754 | ID=Msa0036010-mRNA-1:exon:20594;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64356188 | 64356298 | 64356188 | ID=Msa0036010-mRNA-1:exon:20595;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64356404 | 64356540 | 64356404 | ID=Msa0036010-mRNA-1:exon:20596;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64357086 | 64357199 | 64357086 | ID=Msa0036010-mRNA-1:exon:20597;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64357310 | 64357509 | 64357310 | ID=Msa0036010-mRNA-1:exon:20598;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64357591 | 64357785 | 64357591 | ID=Msa0036010-mRNA-1:exon:20599;Parent=Msa0036010-mRNA-1 |
| chr1_1 | exon | 64357877 | 64358281 | 64357877 | ID=Msa0036010-mRNA-1:exon:20600;Parent=Msa0036010-mRNA-1 |
| chr1_1 | five_prime_UTR | 64353372 | 64353382 | 64353372 | ID=Msa0036010-mRNA-1:five_prime_utr;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64353383 | 64353703 | 64353383 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64355540 | 64355638 | 64355540 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64355754 | 64356006 | 64355754 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64356188 | 64356298 | 64356188 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64356404 | 64356540 | 64356404 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64357086 | 64357199 | 64357086 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64357310 | 64357509 | 64357310 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64357591 | 64357785 | 64357591 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | CDS | 64357877 | 64358039 | 64357877 | ID=Msa0036010-mRNA-1:cds;Parent=Msa0036010-mRNA-1 |
| chr1_1 | three_prime_UTR | 64358040 | 64358281 | 64358040 | ID=Msa0036010-mRNA-1:three_prime_utr;Parent=Msa0036010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
