AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130240 MtrunA17_Chr1g0198271 98.256 172 3 0 1 172 1 172 1.67e-119 334
Msa0130240 MtrunA17_Chr7g0265921 60.127 158 60 1 14 171 14 168 2.88e-51 162
Msa0130240 MtrunA17_Chr2g0321081 56.129 155 67 1 14 168 20 173 2.94e-43 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130240 AT3G52900.1 61.184 152 59 0 17 168 12 163 3.61e-59 182
Msa0130240 AT3G52920.2 55.901 161 68 1 9 169 7 164 4.98e-54 169
Msa0130240 AT2G36410.2 56.863 153 63 1 16 168 43 192 1.18e-53 169
Msa0130240 AT3G52920.1 55.488 164 67 2 9 169 7 167 2.30e-52 165
Msa0130240 AT2G36410.1 56.410 156 62 2 16 168 43 195 4.02e-52 165
Msa0130240 AT2G27740.1 54.658 161 71 2 11 171 16 174 5.33e-52 164
Msa0130240 AT3G09980.1 62.179 156 57 2 15 168 22 177 4.43e-50 159
Msa0130240 AT2G36355.1 57.143 154 61 2 16 168 5 154 1.26e-49 157
Msa0130240 AT5G03660.1 59.459 148 59 1 20 166 22 169 1.15e-41 138
Msa0130240 AT2G36355.2 68.605 86 27 0 83 168 27 112 2.09e-34 117
Msa0130240 AT5G03660.3 59.375 128 51 1 20 146 22 149 1.24e-33 117
Msa0130240 AT2G36355.3 68.675 83 26 0 86 168 1 83 7.47e-33 112
Msa0130240 AT2G36410.3 54.369 103 44 1 16 118 43 142 1.06e-30 109
Msa0130240 AT2G27740.2 50.926 108 52 1 11 118 16 122 2.18e-29 105
Msa0130240 AT5G03660.2 50.676 148 50 2 20 166 22 147 1.22e-27 101
Msa0130240 AT2G36355.4 50.962 104 46 2 16 118 5 104 7.09e-25 94.0

Find 42 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTCACTCAAGTTCTTTA+TGG 0.224071 1_3:+60351858 None:intergenic
GTTGGCCATTTCCACATTAC+AGG 0.296068 1_3:-60353148 Msa0130240:CDS
TTGACTTATTCAACTTCTAA+TGG 0.320227 1_3:-60352105 Msa0130240:three_prime_UTR
CACGGCGTTTGGCTCACATT+TGG 0.338925 1_3:-60353044 Msa0130240:CDS
TGGACAGAACTACCAGAAAA+AGG 0.350574 1_3:-60352588 Msa0130240:intron
AAGAATAAGGATGAAGAAAC+TGG 0.374263 1_3:-60352202 Msa0130240:CDS
ATTGCAACTTCCTTCCTCAT+AGG 0.404433 1_3:+60352656 None:intergenic
CTTAGCCTGTAATGTGGAAA+TGG 0.407703 1_3:+60353143 None:intergenic
ACGGCGTTTGGCTCACATTT+GGG 0.410967 1_3:-60353043 Msa0130240:CDS
ATGAAGAACCTTGGGAGTAT+TGG 0.415220 1_3:-60353222 Msa0130240:CDS
CATAGGCATAAGATAACAAT+AGG 0.417161 1_3:-60353305 Msa0130240:five_prime_UTR
TTTCATTATATTCTGCTGAA+TGG 0.417972 1_3:-60351932 Msa0130240:three_prime_UTR
TATTCAGATTGCTTTGTTTG+CGG 0.418944 1_3:-60352067 Msa0130240:three_prime_UTR
GAACAAAGAGAAGAATCATT+TGG 0.441757 1_3:-60352366 Msa0130240:CDS
TGCAGAAAATGAAGAACCTT+GGG 0.446625 1_3:-60353230 Msa0130240:CDS
GAAAGAGTACAAAGAAGCCT+TGG 0.456836 1_3:-60352405 Msa0130240:CDS
TGGCTGAGAGTGAAAGAATA+AGG 0.460290 1_3:-60352215 Msa0130240:CDS
TGAAGAAGAGACACGGCGTT+TGG 0.474600 1_3:-60353055 Msa0130240:CDS
CATTTCCACATTACAGGCTA+AGG 0.494847 1_3:-60353142 Msa0130240:CDS
ATGCAGAAAATGAAGAACCT+TGG 0.501028 1_3:-60353231 Msa0130240:CDS
AAAGAACTTGAGTGACATCA+AGG 0.501383 1_3:-60351854 Msa0130240:three_prime_UTR
AGATGAAGATATTTCAAAGT+TGG 0.503217 1_3:-60353166 Msa0130240:CDS
AATCTAGGAGCTTGAAGTGA+TGG 0.520454 1_3:-60352684 Msa0130240:intron
GAGAGAGTTGAACTTCAACT+TGG 0.532697 1_3:-60353084 Msa0130240:CDS
AACAAAGATGTAAAGCAACT+TGG 0.534974 1_3:-60352608 Msa0130240:CDS
CTTGGGAGTATTGGAAGCAG+TGG 0.576920 1_3:-60353213 Msa0130240:CDS
TGAATTAAGATACAATTACA+AGG 0.581905 1_3:+60351969 None:intergenic
CACTGCTTCCAATACTCCCA+AGG 0.585127 1_3:+60353214 None:intergenic
AAGTGATGGAAGATCCTATG+AGG 0.585128 1_3:-60352670 Msa0130240:CDS
GATGGAAGATCCTATGAGGA+AGG 0.586096 1_3:-60352666 Msa0130240:CDS
TTCTTCCTTAGCCTGTAATG+TGG 0.593323 1_3:+60353137 None:intergenic
CTAAGGAAGAAGAGATTGAG+AGG 0.599867 1_3:-60353125 Msa0130240:CDS
AAGAACTTGAGTGACATCAA+GGG 0.607579 1_3:-60351853 Msa0130240:three_prime_UTR
AAGCTTCTGCTAACTCACAT+AGG 0.607608 1_3:-60353322 Msa0130240:five_prime_UTR
GGTGCGTAAGAAAATTGACT+TGG 0.609025 1_3:-60352633 Msa0130240:CDS
TATGAGGAAGGAAGTTGCAA+TGG 0.615989 1_3:-60352654 Msa0130240:CDS
AGAACTTGAGTGACATCAAG+GGG 0.625472 1_3:-60351852 Msa0130240:three_prime_UTR
GGAGTATTGGAAGCAGTGGG+AGG 0.639884 1_3:-60353209 Msa0130240:CDS
TTGGGAGTATTGGAAGCAGT+GGG 0.639948 1_3:-60353212 Msa0130240:CDS
AATAAGGATGAAGAAACTGG+AGG 0.697364 1_3:-60352199 Msa0130240:CDS
GACGTGCTGAAGAAGAGACA+CGG 0.698783 1_3:-60353062 Msa0130240:CDS
TTTGGTAGCGACACTAACTG+AGG 0.713091 1_3:-60352348 Msa0130240:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGAAATTAAATTCTAT+TGG - chr1_3:60352423-60352442 Msa0130240:intron 10.0%
!! TTATTGAAATTAAATTCTAT+TGG - chr1_3:60352423-60352442 Msa0130240:intron 10.0%
!! TTAATAATAAACTTCAAATC+TGG + chr1_3:60352268-60352287 None:intergenic 15.0%
!!! ACCTTTAAAATTTACTTAAT+AGG - chr1_3:60352745-60352764 Msa0130240:intron 15.0%
!!! TCCTATTAAGTAAATTTTAA+AGG + chr1_3:60352749-60352768 None:intergenic 15.0%
!! TTAATAATAAACTTCAAATC+TGG + chr1_3:60352268-60352287 None:intergenic 15.0%
!!! ACCTTTAAAATTTACTTAAT+AGG - chr1_3:60352745-60352764 Msa0130240:intron 15.0%
!!! TCCTATTAAGTAAATTTTAA+AGG + chr1_3:60352749-60352768 None:intergenic 15.0%
!! ATATGTTTATTTCCTAAACA+TGG + chr1_3:60352166-60352185 None:intergenic 20.0%
!!! AAATTTTGTTCAAGAAATGA+TGG + chr1_3:60352346-60352365 None:intergenic 20.0%
!! TTATTCAACAGAAGATAATA+TGG + chr1_3:60352620-60352639 None:intergenic 20.0%
!! AAAATTTACAAGACAAATCA+AGG + chr1_3:60352679-60352698 None:intergenic 20.0%
!!! TTGATTTGTCTTGTAAATTT+TGG - chr1_3:60352678-60352697 Msa0130240:CDS 20.0%
!!! CAATATTTTACTTCTTTTCA+TGG - chr1_3:60352906-60352925 Msa0130240:intron 20.0%
!!! TTTATCTTTTTAATAGATGC+TGG - chr1_3:60352939-60352958 Msa0130240:intron 20.0%
!! TGATTGATTGTAAAAAAGAA+AGG - chr1_3:60353163-60353182 Msa0130240:CDS 20.0%
!! TGAATTAAGATACAATTACA+AGG + chr1_3:60353208-60353227 None:intergenic 20.0%
!! ATATGTTTATTTCCTAAACA+TGG + chr1_3:60352166-60352185 None:intergenic 20.0%
!!! AAATTTTGTTCAAGAAATGA+TGG + chr1_3:60352346-60352365 None:intergenic 20.0%
!! TTATTCAACAGAAGATAATA+TGG + chr1_3:60352620-60352639 None:intergenic 20.0%
!! AAAATTTACAAGACAAATCA+AGG + chr1_3:60352679-60352698 None:intergenic 20.0%
!!! TTGATTTGTCTTGTAAATTT+TGG - chr1_3:60352678-60352697 Msa0130240:CDS 20.0%
!!! CAATATTTTACTTCTTTTCA+TGG - chr1_3:60352906-60352925 Msa0130240:intron 20.0%
!!! TTTATCTTTTTAATAGATGC+TGG - chr1_3:60352939-60352958 Msa0130240:intron 20.0%
!! TGATTGATTGTAAAAAAGAA+AGG - chr1_3:60353163-60353182 Msa0130240:CDS 20.0%
!! TGAATTAAGATACAATTACA+AGG + chr1_3:60353208-60353227 None:intergenic 20.0%
! AGATGAAGATATTTCAAAGT+TGG - chr1_3:60352008-60352027 Msa0130240:three_prime_UTR 25.0%
!!! ATTGGACGATATTTTAAGTA+CGG + chr1_3:60352311-60352330 None:intergenic 25.0%
! AATATTGTTACCATGGTAAT+TGG + chr1_3:60352893-60352912 None:intergenic 25.0%
! GAAGTAAAATATTGTTACCA+TGG + chr1_3:60352900-60352919 None:intergenic 25.0%
! TTGACTTATTCAACTTCTAA+TGG - chr1_3:60353069-60353088 Msa0130240:CDS 25.0%
! TTTCATTATATTCTGCTGAA+TGG - chr1_3:60353242-60353261 Msa0130240:CDS 25.0%
! AGATGAAGATATTTCAAAGT+TGG - chr1_3:60352008-60352027 Msa0130240:three_prime_UTR 25.0%
!!! ATTGGACGATATTTTAAGTA+CGG + chr1_3:60352311-60352330 None:intergenic 25.0%
! AATATTGTTACCATGGTAAT+TGG + chr1_3:60352893-60352912 None:intergenic 25.0%
! GAAGTAAAATATTGTTACCA+TGG + chr1_3:60352900-60352919 None:intergenic 25.0%
! TTGACTTATTCAACTTCTAA+TGG - chr1_3:60353069-60353088 Msa0130240:CDS 25.0%
! TTTCATTATATTCTGCTGAA+TGG - chr1_3:60353242-60353261 Msa0130240:CDS 25.0%
CATAGGCATAAGATAACAAT+AGG - chr1_3:60351869-60351888 Msa0130240:three_prime_UTR 30.0%
AATAAACTTCAAATCTGGAC+TGG + chr1_3:60352263-60352282 None:intergenic 30.0%
CTTTCTATTGTCAACAACAT+GGG + chr1_3:60352397-60352416 None:intergenic 30.0%
CTGTCGTATAATGATAATCT+AGG - chr1_3:60352475-60352494 Msa0130240:intron 30.0%
AACAAAGATGTAAAGCAACT+TGG - chr1_3:60352566-60352585 Msa0130240:intron 30.0%
GAACAAAGAGAAGAATCATT+TGG - chr1_3:60352808-60352827 Msa0130240:intron 30.0%
AAGAATAAGGATGAAGAAAC+TGG - chr1_3:60352972-60352991 Msa0130240:intron 30.0%
!! TATTCAGATTGCTTTGTTTG+CGG - chr1_3:60353107-60353126 Msa0130240:CDS 30.0%
CATAGGCATAAGATAACAAT+AGG - chr1_3:60351869-60351888 Msa0130240:three_prime_UTR 30.0%
AATAAACTTCAAATCTGGAC+TGG + chr1_3:60352263-60352282 None:intergenic 30.0%
CTTTCTATTGTCAACAACAT+GGG + chr1_3:60352397-60352416 None:intergenic 30.0%
CTGTCGTATAATGATAATCT+AGG - chr1_3:60352475-60352494 Msa0130240:intron 30.0%
AACAAAGATGTAAAGCAACT+TGG - chr1_3:60352566-60352585 Msa0130240:intron 30.0%
GAACAAAGAGAAGAATCATT+TGG - chr1_3:60352808-60352827 Msa0130240:intron 30.0%
AAGAATAAGGATGAAGAAAC+TGG - chr1_3:60352972-60352991 Msa0130240:intron 30.0%
!! TATTCAGATTGCTTTGTTTG+CGG - chr1_3:60353107-60353126 Msa0130240:CDS 30.0%
ATGCAGAAAATGAAGAACCT+TGG - chr1_3:60351943-60351962 Msa0130240:three_prime_UTR 35.0%
TGCAGAAAATGAAGAACCTT+GGG - chr1_3:60351944-60351963 Msa0130240:three_prime_UTR 35.0%
AGAGATTGAGAGGAAAAAGA+TGG - chr1_3:60352059-60352078 Msa0130240:three_prime_UTR 35.0%
GCTTTCTATTGTCAACAACA+TGG + chr1_3:60352398-60352417 None:intergenic 35.0%
AGAACTACCAGAAAAAGGTA+TGG - chr1_3:60352591-60352610 Msa0130240:CDS 35.0%
! CTTTTCATTGAAAGCTTCCA+AGG + chr1_3:60352789-60352808 None:intergenic 35.0%
AATAAGGATGAAGAAACTGG+AGG - chr1_3:60352975-60352994 Msa0130240:intron 35.0%
! TTTTAGTGACACAGACTCTA+TGG + chr1_3:60353013-60353032 None:intergenic 35.0%
TATCACAACATGTATCTGCT+TGG + chr1_3:60353282-60353301 None:intergenic 35.0%
GATGTCACTCAAGTTCTTTA+TGG + chr1_3:60353319-60353338 None:intergenic 35.0%
AAAGAACTTGAGTGACATCA+AGG - chr1_3:60353320-60353339 Msa0130240:five_prime_UTR 35.0%
AAGAACTTGAGTGACATCAA+GGG - chr1_3:60353321-60353340 Msa0130240:five_prime_UTR 35.0%
ATGCAGAAAATGAAGAACCT+TGG - chr1_3:60351943-60351962 Msa0130240:three_prime_UTR 35.0%
TGCAGAAAATGAAGAACCTT+GGG - chr1_3:60351944-60351963 Msa0130240:three_prime_UTR 35.0%
AGAGATTGAGAGGAAAAAGA+TGG - chr1_3:60352059-60352078 Msa0130240:three_prime_UTR 35.0%
GCTTTCTATTGTCAACAACA+TGG + chr1_3:60352398-60352417 None:intergenic 35.0%
AGAACTACCAGAAAAAGGTA+TGG - chr1_3:60352591-60352610 Msa0130240:CDS 35.0%
! CTTTTCATTGAAAGCTTCCA+AGG + chr1_3:60352789-60352808 None:intergenic 35.0%
AATAAGGATGAAGAAACTGG+AGG - chr1_3:60352975-60352994 Msa0130240:intron 35.0%
! TTTTAGTGACACAGACTCTA+TGG + chr1_3:60353013-60353032 None:intergenic 35.0%
TATCACAACATGTATCTGCT+TGG + chr1_3:60353282-60353301 None:intergenic 35.0%
GATGTCACTCAAGTTCTTTA+TGG + chr1_3:60353319-60353338 None:intergenic 35.0%
AAAGAACTTGAGTGACATCA+AGG - chr1_3:60353320-60353339 Msa0130240:five_prime_UTR 35.0%
AAGAACTTGAGTGACATCAA+GGG - chr1_3:60353321-60353340 Msa0130240:five_prime_UTR 35.0%
AAGCTTCTGCTAACTCACAT+AGG - chr1_3:60351852-60351871 Msa0130240:three_prime_UTR 40.0%
! ATGAAGAACCTTGGGAGTAT+TGG - chr1_3:60351952-60351971 Msa0130240:three_prime_UTR 40.0%
CTTAGCCTGTAATGTGGAAA+TGG + chr1_3:60352034-60352053 None:intergenic 40.0%
CATTTCCACATTACAGGCTA+AGG - chr1_3:60352032-60352051 Msa0130240:three_prime_UTR 40.0%
TTCTTCCTTAGCCTGTAATG+TGG + chr1_3:60352040-60352059 None:intergenic 40.0%
CTAAGGAAGAAGAGATTGAG+AGG - chr1_3:60352049-60352068 Msa0130240:three_prime_UTR 40.0%
GATTGAGAGGAAAAAGATGG+AGG - chr1_3:60352062-60352081 Msa0130240:three_prime_UTR 40.0%
GAGAGAGTTGAACTTCAACT+TGG - chr1_3:60352090-60352109 Msa0130240:three_prime_UTR 40.0%
GGGAAGTAAGTTCCATGTTT+AGG - chr1_3:60352151-60352170 Msa0130240:exon 40.0%
CATGGATTTCTTGAGAGAGA+TGG + chr1_3:60352193-60352212 None:intergenic 40.0%
TGATGGTCAGCAAACTAGAT+TGG + chr1_3:60352329-60352348 None:intergenic 40.0%
AATCTAGGAGCTTGAAGTGA+TGG - chr1_3:60352490-60352509 Msa0130240:intron 40.0%
! AAGTGATGGAAGATCCTATG+AGG - chr1_3:60352504-60352523 Msa0130240:intron 40.0%
ATTGCAACTTCCTTCCTCAT+AGG + chr1_3:60352521-60352540 None:intergenic 40.0%
TATGAGGAAGGAAGTTGCAA+TGG - chr1_3:60352520-60352539 Msa0130240:intron 40.0%
GGTGCGTAAGAAAATTGACT+TGG - chr1_3:60352541-60352560 Msa0130240:intron 40.0%
TGGACAGAACTACCAGAAAA+AGG - chr1_3:60352586-60352605 Msa0130240:intron 40.0%
! ATGGTTGCCATACCTTTTTC+TGG + chr1_3:60352601-60352620 None:intergenic 40.0%
! GAAAGAGTACAAAGAAGCCT+TGG - chr1_3:60352769-60352788 Msa0130240:intron 40.0%
GACTTCGATTCCAATTACCA+TGG - chr1_3:60352880-60352899 Msa0130240:intron 40.0%
TGGCTGAGAGTGAAAGAATA+AGG - chr1_3:60352959-60352978 Msa0130240:intron 40.0%
CAACATGTATCTGCTTGGTT+AGG + chr1_3:60353277-60353296 None:intergenic 40.0%
AGAACTTGAGTGACATCAAG+GGG - chr1_3:60353322-60353341 Msa0130240:five_prime_UTR 40.0%
AAGCTTCTGCTAACTCACAT+AGG - chr1_3:60351852-60351871 Msa0130240:three_prime_UTR 40.0%
! ATGAAGAACCTTGGGAGTAT+TGG - chr1_3:60351952-60351971 Msa0130240:three_prime_UTR 40.0%
CTTAGCCTGTAATGTGGAAA+TGG + chr1_3:60352034-60352053 None:intergenic 40.0%
CATTTCCACATTACAGGCTA+AGG - chr1_3:60352032-60352051 Msa0130240:three_prime_UTR 40.0%
TTCTTCCTTAGCCTGTAATG+TGG + chr1_3:60352040-60352059 None:intergenic 40.0%
CTAAGGAAGAAGAGATTGAG+AGG - chr1_3:60352049-60352068 Msa0130240:three_prime_UTR 40.0%
GATTGAGAGGAAAAAGATGG+AGG - chr1_3:60352062-60352081 Msa0130240:three_prime_UTR 40.0%
GAGAGAGTTGAACTTCAACT+TGG - chr1_3:60352090-60352109 Msa0130240:three_prime_UTR 40.0%
GGGAAGTAAGTTCCATGTTT+AGG - chr1_3:60352151-60352170 Msa0130240:exon 40.0%
CATGGATTTCTTGAGAGAGA+TGG + chr1_3:60352193-60352212 None:intergenic 40.0%
TGATGGTCAGCAAACTAGAT+TGG + chr1_3:60352329-60352348 None:intergenic 40.0%
AATCTAGGAGCTTGAAGTGA+TGG - chr1_3:60352490-60352509 Msa0130240:intron 40.0%
! AAGTGATGGAAGATCCTATG+AGG - chr1_3:60352504-60352523 Msa0130240:intron 40.0%
ATTGCAACTTCCTTCCTCAT+AGG + chr1_3:60352521-60352540 None:intergenic 40.0%
TATGAGGAAGGAAGTTGCAA+TGG - chr1_3:60352520-60352539 Msa0130240:intron 40.0%
GGTGCGTAAGAAAATTGACT+TGG - chr1_3:60352541-60352560 Msa0130240:intron 40.0%
TGGACAGAACTACCAGAAAA+AGG - chr1_3:60352586-60352605 Msa0130240:intron 40.0%
! ATGGTTGCCATACCTTTTTC+TGG + chr1_3:60352601-60352620 None:intergenic 40.0%
! GAAAGAGTACAAAGAAGCCT+TGG - chr1_3:60352769-60352788 Msa0130240:intron 40.0%
GACTTCGATTCCAATTACCA+TGG - chr1_3:60352880-60352899 Msa0130240:intron 40.0%
TGGCTGAGAGTGAAAGAATA+AGG - chr1_3:60352959-60352978 Msa0130240:intron 40.0%
CAACATGTATCTGCTTGGTT+AGG + chr1_3:60353277-60353296 None:intergenic 40.0%
AGAACTTGAGTGACATCAAG+GGG - chr1_3:60353322-60353341 Msa0130240:five_prime_UTR 40.0%
!! TTGGGAGTATTGGAAGCAGT+GGG - chr1_3:60351962-60351981 Msa0130240:three_prime_UTR 45.0%
GTTGGCCATTTCCACATTAC+AGG - chr1_3:60352026-60352045 Msa0130240:three_prime_UTR 45.0%
TTGTTGATCGCTTGACTGCA+TGG + chr1_3:60352211-60352230 None:intergenic 45.0%
GATGGAAGATCCTATGAGGA+AGG - chr1_3:60352508-60352527 Msa0130240:intron 45.0%
!! TTTGGTAGCGACACTAACTG+AGG - chr1_3:60352826-60352845 Msa0130240:intron 45.0%
!! TTGGGAGTATTGGAAGCAGT+GGG - chr1_3:60351962-60351981 Msa0130240:three_prime_UTR 45.0%
GTTGGCCATTTCCACATTAC+AGG - chr1_3:60352026-60352045 Msa0130240:three_prime_UTR 45.0%
TTGTTGATCGCTTGACTGCA+TGG + chr1_3:60352211-60352230 None:intergenic 45.0%
GATGGAAGATCCTATGAGGA+AGG - chr1_3:60352508-60352527 Msa0130240:intron 45.0%
!! TTTGGTAGCGACACTAACTG+AGG - chr1_3:60352826-60352845 Msa0130240:intron 45.0%
CACTGCTTCCAATACTCCCA+AGG + chr1_3:60351963-60351982 None:intergenic 50.0%
!! CTTGGGAGTATTGGAAGCAG+TGG - chr1_3:60351961-60351980 Msa0130240:three_prime_UTR 50.0%
GACGTGCTGAAGAAGAGACA+CGG - chr1_3:60352112-60352131 Msa0130240:three_prime_UTR 50.0%
TGAAGAAGAGACACGGCGTT+TGG - chr1_3:60352119-60352138 Msa0130240:three_prime_UTR 50.0%
! ACGGCGTTTGGCTCACATTT+GGG - chr1_3:60352131-60352150 Msa0130240:three_prime_UTR 50.0%
CACTGCTTCCAATACTCCCA+AGG + chr1_3:60351963-60351982 None:intergenic 50.0%
!! CTTGGGAGTATTGGAAGCAG+TGG - chr1_3:60351961-60351980 Msa0130240:three_prime_UTR 50.0%
GACGTGCTGAAGAAGAGACA+CGG - chr1_3:60352112-60352131 Msa0130240:three_prime_UTR 50.0%
TGAAGAAGAGACACGGCGTT+TGG - chr1_3:60352119-60352138 Msa0130240:three_prime_UTR 50.0%
! ACGGCGTTTGGCTCACATTT+GGG - chr1_3:60352131-60352150 Msa0130240:three_prime_UTR 50.0%
!! GGAGTATTGGAAGCAGTGGG+AGG - chr1_3:60351965-60351984 Msa0130240:three_prime_UTR 55.0%
! CACGGCGTTTGGCTCACATT+TGG - chr1_3:60352130-60352149 Msa0130240:three_prime_UTR 55.0%
!! GGAGTATTGGAAGCAGTGGG+AGG - chr1_3:60351965-60351984 Msa0130240:three_prime_UTR 55.0%
! CACGGCGTTTGGCTCACATT+TGG - chr1_3:60352130-60352149 Msa0130240:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60351845 60353351 60351845 ID=Msa0130240;Name=Msa0130240
chr1_3 mRNA 60351845 60353351 60351845 ID=Msa0130240-mRNA-1;Parent=Msa0130240;Name=Msa0130240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|1|1|1|0.75|0.6|5|289|172
chr1_3 exon 60351845 60351893 60351845 ID=Msa0130240-mRNA-1:exon:19885;Parent=Msa0130240-mRNA-1
chr1_3 exon 60351918 60352241 60351918 ID=Msa0130240-mRNA-1:exon:19884;Parent=Msa0130240-mRNA-1
chr1_3 exon 60352349 60352429 60352349 ID=Msa0130240-mRNA-1:exon:19883;Parent=Msa0130240-mRNA-1
chr1_3 exon 60352589 60352699 60352589 ID=Msa0130240-mRNA-1:exon:19882;Parent=Msa0130240-mRNA-1
chr1_3 exon 60353041 60353351 60353041 ID=Msa0130240-mRNA-1:exon:19881;Parent=Msa0130240-mRNA-1
chr1_3 five_prime_UTR 60353284 60353351 60353284 ID=Msa0130240-mRNA-1:five_prime_utr;Parent=Msa0130240-mRNA-1
chr1_3 CDS 60353041 60353283 60353041 ID=Msa0130240-mRNA-1:cds;Parent=Msa0130240-mRNA-1
chr1_3 CDS 60352589 60352699 60352589 ID=Msa0130240-mRNA-1:cds;Parent=Msa0130240-mRNA-1
chr1_3 CDS 60352349 60352429 60352349 ID=Msa0130240-mRNA-1:cds;Parent=Msa0130240-mRNA-1
chr1_3 CDS 60352158 60352241 60352158 ID=Msa0130240-mRNA-1:cds;Parent=Msa0130240-mRNA-1
chr1_3 three_prime_UTR 60351918 60352157 60351918 ID=Msa0130240-mRNA-1:three_prime_utr;Parent=Msa0130240-mRNA-1
chr1_3 three_prime_UTR 60351845 60351893 60351845 ID=Msa0130240-mRNA-1:three_prime_utr;Parent=Msa0130240-mRNA-1
Gene Sequence

>Msa0130240

ATGTGTCTAATTTGCAGAAAGAGAGCAAAAATGCAGAAAATGAAGAACCTTGGGAGTATTGGAAGCAGTGGGAGGTTTTCAACAGAAGAGTGTGAAGATGAAGATATTTCAAAGTTGGCCATTTCCACATTACAGGCTAAGGAAGAAGAGATTGAGAGGAAAAAGATGGAGGTGAAAGAGAGAGTTGAACTTCAACTTGGACGTGCTGAAGAAGAGACACGGCGTTTGGCTCACATTTGGGAAGAGCTTGAAGTGATGGAAGATCCTATGAGGAAGGAAGTTGCAATGGTGCGTAAGAAAATTGACTTGGCTAACAAAGATGTAAAGCAACTTGGACAGAACTACCAGAAAAAGGAGAAAGAGTACAAAGAAGCCTTGGAAGCTTTCAATGAAAAGAACAAAGAGAAGAATCATTTGGTAGCGACACTAACTGAGATGCTGGCTGAGAGTGAAAGAATAAGGATGAAGAAACTGGAGGAGCTATGCAAGACCATAGAGTCTGTGTCACTAAAACAATAA

Protein sequence

>Msa0130240

MCLICRKRAKMQKMKNLGSIGSSGRFSTEECEDEDISKLAISTLQAKEEEIERKKMEVKERVELQLGRAEEETRRLAHIWEELEVMEDPMRKEVAMVRKKIDLANKDVKQLGQNYQKKEKEYKEALEAFNEKNKEKNHLVATLTEMLAESERIRMKKLEELCKTIESVSLKQ*