Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035810 | sp|Q9LZR3|CSLA9_ARATH | 76.608 | 513 | 117 | 3 | 17 | 528 | 21 | 531 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035810 | A0A072VNP9 | 99.245 | 530 | 4 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1092 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035810 | Msa0036010 | 0.954592 | 2.088461e-112 | -8.615850e-47 |
| Msa0035810 | Msa0083920 | 0.910471 | 1.804980e-82 | -8.615850e-47 |
| Msa0035810 | Msa0219190 | 0.806089 | 9.745033e-50 | -8.615850e-47 |
| Msa0035810 | Msa0298240 | 0.816011 | 6.888943e-52 | -8.615850e-47 |
| Msa0035810 | Msa0336090 | 0.826912 | 2.090463e-54 | -8.615850e-47 |
| Msa0035810 | Msa0688500 | 0.807878 | 4.076673e-50 | -8.615850e-47 |
| Msa0035810 | Msa0761580 | 0.807226 | 5.606589e-50 | -8.615850e-47 |
| Msa0035810 | Msa0872310 | 0.825240 | 5.222152e-54 | -8.615850e-47 |
| Msa0035810 | Msa0905550 | 0.807300 | 5.407345e-50 | -8.615850e-47 |
| Msa0035810 | Msa0937550 | 0.811236 | 7.742943e-51 | -8.615850e-47 |
| Msa0035810 | Msa1007350 | 0.802854 | 4.604074e-49 | -8.615850e-47 |
| Msa0035810 | Msa1032450 | 0.802257 | 6.113150e-49 | -8.615850e-47 |
| Msa0035810 | Msa1123880 | 0.801937 | 7.113495e-49 | -8.615850e-47 |
| Msa0035810 | Msa1166400 | 0.804723 | 1.883405e-49 | -8.615850e-47 |
| Msa0035810 | Msa1420060 | 0.818879 | 1.556608e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035810 | MtrunA17_Chr1g0198111 | 99.245 | 530 | 4 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1092 |
| Msa0035810 | MtrunA17_Chr7g0265711 | 76.460 | 531 | 121 | 2 | 1 | 528 | 1 | 530 | 0.0 | 878 |
| Msa0035810 | MtrunA17_Chr1g0179441 | 75.624 | 521 | 126 | 1 | 10 | 530 | 4 | 523 | 0.0 | 855 |
| Msa0035810 | MtrunA17_Chr1g0179421 | 71.785 | 521 | 146 | 1 | 10 | 530 | 4 | 523 | 0.0 | 813 |
| Msa0035810 | MtrunA17_Chr1g0179381 | 70.441 | 521 | 152 | 2 | 10 | 530 | 4 | 522 | 0.0 | 793 |
| Msa0035810 | MtrunA17_Chr4g0027221 | 67.297 | 529 | 159 | 3 | 12 | 527 | 15 | 542 | 0.0 | 760 |
| Msa0035810 | MtrunA17_Chr7g0264621 | 63.529 | 510 | 182 | 3 | 21 | 528 | 21 | 528 | 0.0 | 699 |
| Msa0035810 | MtrunA17_Chr1g0179391 | 76.106 | 339 | 81 | 0 | 139 | 477 | 1 | 339 | 0.0 | 565 |
| Msa0035810 | MtrunA17_Chr3g0135191 | 48.611 | 432 | 216 | 3 | 25 | 455 | 171 | 597 | 2.19e-146 | 436 |
| Msa0035810 | MtrunA17_Chr4g0000581 | 48.190 | 442 | 225 | 2 | 16 | 457 | 162 | 599 | 8.04e-146 | 435 |
| Msa0035810 | MtrunA17_Chr3g0139081 | 47.033 | 455 | 238 | 2 | 25 | 479 | 155 | 606 | 3.61e-144 | 431 |
| Msa0035810 | MtrunA17_Chr6g0451381 | 45.495 | 455 | 239 | 3 | 24 | 477 | 139 | 585 | 1.65e-143 | 428 |
| Msa0035810 | MtrunA17_Chr8g0339101 | 41.588 | 529 | 275 | 5 | 25 | 524 | 175 | 698 | 5.83e-133 | 402 |
| Msa0035810 | MtrunA17_Chr1g0179401 | 63.359 | 131 | 47 | 1 | 10 | 140 | 4 | 133 | 1.57e-52 | 176 |
| Msa0035810 | MtrunA17_Chr4g0064791 | 44.355 | 124 | 63 | 1 | 79 | 196 | 77 | 200 | 5.16e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035810 | AT5G03760.1 | 76.608 | 513 | 117 | 3 | 17 | 528 | 21 | 531 | 0.0 | 832 |
| Msa0035810 | AT5G22740.1 | 71.401 | 521 | 146 | 3 | 10 | 528 | 14 | 533 | 0.0 | 797 |
| Msa0035810 | AT1G23480.1 | 68.605 | 516 | 162 | 0 | 13 | 528 | 39 | 554 | 0.0 | 772 |
| Msa0035810 | AT1G23480.2 | 68.605 | 516 | 162 | 0 | 13 | 528 | 39 | 554 | 0.0 | 772 |
| Msa0035810 | AT1G23480.3 | 70.539 | 482 | 142 | 0 | 47 | 528 | 1 | 482 | 0.0 | 739 |
| Msa0035810 | AT4G13410.1 | 64.833 | 509 | 173 | 2 | 16 | 524 | 34 | 536 | 0.0 | 728 |
| Msa0035810 | AT2G35650.1 | 66.732 | 514 | 167 | 2 | 17 | 530 | 43 | 552 | 0.0 | 726 |
| Msa0035810 | AT5G16190.3 | 67.000 | 500 | 163 | 2 | 25 | 524 | 6 | 503 | 0.0 | 709 |
| Msa0035810 | AT1G24070.1 | 63.168 | 524 | 190 | 3 | 2 | 524 | 30 | 551 | 0.0 | 706 |
| Msa0035810 | AT2G35650.4 | 68.182 | 484 | 150 | 2 | 47 | 530 | 1 | 480 | 0.0 | 698 |
| Msa0035810 | AT2G35650.2 | 68.182 | 484 | 150 | 2 | 47 | 530 | 1 | 480 | 0.0 | 698 |
| Msa0035810 | AT5G16190.4 | 62.852 | 533 | 163 | 3 | 25 | 524 | 6 | 536 | 0.0 | 693 |
| Msa0035810 | AT3G56000.1 | 60.501 | 519 | 199 | 4 | 16 | 530 | 13 | 529 | 0.0 | 667 |
| Msa0035810 | AT5G16190.2 | 70.022 | 447 | 132 | 2 | 25 | 471 | 6 | 450 | 0.0 | 662 |
| Msa0035810 | AT5G16190.1 | 69.231 | 442 | 135 | 1 | 83 | 524 | 2 | 442 | 0.0 | 651 |
| Msa0035810 | AT4G16590.1 | 58.020 | 505 | 176 | 3 | 20 | 524 | 51 | 519 | 0.0 | 621 |
| Msa0035810 | AT1G23480.4 | 70.694 | 389 | 114 | 0 | 140 | 528 | 21 | 409 | 0.0 | 598 |
| Msa0035810 | AT4G13410.3 | 67.105 | 380 | 120 | 1 | 145 | 524 | 1 | 375 | 0.0 | 565 |
| Msa0035810 | AT2G35650.3 | 67.684 | 393 | 124 | 1 | 138 | 530 | 5 | 394 | 0.0 | 561 |
| Msa0035810 | AT4G13410.2 | 64.444 | 360 | 119 | 3 | 16 | 374 | 34 | 385 | 2.98e-176 | 502 |
| Msa0035810 | AT1G24070.2 | 61.039 | 385 | 136 | 4 | 2 | 385 | 30 | 401 | 2.30e-171 | 490 |
| Msa0035810 | AT4G31590.1 | 47.903 | 453 | 228 | 3 | 25 | 472 | 160 | 609 | 9.96e-149 | 442 |
| Msa0035810 | AT2G24630.1 | 49.083 | 436 | 213 | 3 | 25 | 457 | 160 | 589 | 1.74e-148 | 442 |
| Msa0035810 | AT2G24630.2 | 49.083 | 436 | 213 | 3 | 25 | 457 | 160 | 589 | 1.74e-148 | 442 |
| Msa0035810 | AT3G28180.1 | 47.973 | 444 | 222 | 3 | 15 | 457 | 126 | 561 | 2.12e-145 | 434 |
| Msa0035810 | AT3G07330.1 | 41.588 | 529 | 277 | 5 | 25 | 524 | 153 | 678 | 5.92e-141 | 422 |
| Msa0035810 | AT3G07330.2 | 41.588 | 529 | 277 | 5 | 25 | 524 | 153 | 678 | 5.92e-141 | 422 |
| Msa0035810 | AT4G07960.1 | 43.643 | 527 | 265 | 7 | 25 | 524 | 174 | 695 | 4.36e-138 | 416 |
| Msa0035810 | AT4G07960.2 | 43.643 | 527 | 265 | 7 | 25 | 524 | 174 | 695 | 4.36e-138 | 416 |
Find 134 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAGAGAAACATTATAAA+TGG | 0.193489 | 1_1:+64172882 | Msa0035810:CDS |
| CTCTGCTTTCCCTATGGTTT+TGG | 0.193902 | 1_1:+64172940 | Msa0035810:CDS |
| TTCAAGTATTACAAAATAAT+TGG | 0.222837 | 1_1:-64177467 | None:intergenic |
| TCCATAACTCATGCTTTCTT+TGG | 0.225275 | 1_1:+64175557 | Msa0035810:CDS |
| AGCAAATCTCTTCAGGAAAA+TGG | 0.286938 | 1_1:+64176443 | Msa0035810:CDS |
| AGGACCAAGGCAACAGTTAT+AGG | 0.295281 | 1_1:+64176935 | Msa0035810:CDS |
| CTCAACAGATCCAATCATTA+AGG | 0.296511 | 1_1:+64174906 | Msa0035810:CDS |
| ATTGTCTTTCTTAAGTTGTT+TGG | 0.309441 | 1_1:+64172854 | Msa0035810:CDS |
| ATGGGTAGTTACTGAGAAAT+TGG | 0.313856 | 1_1:+64176985 | Msa0035810:CDS |
| CATGCTTTCTTTGGTTTCAA+TGG | 0.321614 | 1_1:+64175566 | Msa0035810:CDS |
| TTGGAGTTCCAACAGCATTA+AGG | 0.324765 | 1_1:-64176775 | None:intergenic |
| GGATGCTATGATCTTGCCTT+TGG | 0.327298 | 1_1:+64177212 | Msa0035810:CDS |
| TCTATTGCCTTCTTTGTTGT+GGG | 0.334726 | 1_1:+64177269 | Msa0035810:CDS |
| CTATCATTTCCTTGTGGAAC+AGG | 0.336157 | 1_1:+64175526 | Msa0035810:CDS |
| AGGCTCCCACACCAAGTTCT+AGG | 0.349691 | 1_1:-64177175 | None:intergenic |
| GATTTCAAAACCTTAATGAT+TGG | 0.350715 | 1_1:-64174916 | None:intergenic |
| TCCCATTTATAATGTTTCTC+TGG | 0.352310 | 1_1:-64172884 | None:intergenic |
| AGATTTGAAAGTGTGCATTA+TGG | 0.359486 | 1_1:+64172695 | Msa0035810:CDS |
| TTAACCAAATGAATTTCATT+TGG | 0.366936 | 1_1:+64172723 | Msa0035810:CDS |
| TCTGGAACTAAAACAGTTGC+AGG | 0.378471 | 1_1:-64176701 | None:intergenic |
| GTTGCCAAATGAAATTCATT+TGG | 0.381283 | 1_1:-64172727 | None:intergenic |
| CACTTGGGAACTTCTACTTC+TGG | 0.390733 | 1_1:-64176719 | None:intergenic |
| GATGCTATGATCTTGCCTTT+GGG | 0.390992 | 1_1:+64177213 | Msa0035810:CDS |
| TTATAAATGGGAGGCACTTA+AGG | 0.390999 | 1_1:+64172895 | Msa0035810:CDS |
| GTGGCCCAGCAAATCTCTTC+AGG | 0.393738 | 1_1:+64176436 | Msa0035810:CDS |
| ATCTATTGCCTTCTTTGTTG+TGG | 0.397674 | 1_1:+64177268 | Msa0035810:CDS |
| GAGTTGTTCCTCTTAAGATC+TGG | 0.398027 | 1_1:-64177318 | None:intergenic |
| CGGTAGGCTTTGAATGTACT+TGG | 0.409136 | 1_1:-64176390 | None:intergenic |
| CCACATGGGCTATGATCTTC+CGG | 0.409526 | 1_1:-64176649 | None:intergenic |
| CCGCACAACAGTGGAAGATA+TGG | 0.414499 | 1_1:+64175748 | Msa0035810:CDS |
| CGGTAAAGAAAGTTAGATTC+AGG | 0.418214 | 1_1:-64175211 | None:intergenic |
| CAGGTGTATCAATTATCAAT+TGG | 0.424571 | 1_1:+64174826 | Msa0035810:intron |
| AAACATAAAGTATGAGATAA+GGG | 0.425945 | 1_1:+64175087 | Msa0035810:CDS |
| TAGGTTTGTTTGAGGCTGGT+AGG | 0.426910 | 1_1:+64176954 | Msa0035810:CDS |
| ATGCAGGTACAGCTGGTGTT+TGG | 0.427415 | 1_1:+64175687 | Msa0035810:intron |
| CTATGTTCCCAGATCTTAAG+AGG | 0.430666 | 1_1:+64177310 | Msa0035810:exon |
| CAAAGAAGGCAATAGATTGC+AGG | 0.430943 | 1_1:-64177262 | None:intergenic |
| AGTTCCAGTGTTGAAATTGT+TGG | 0.435622 | 1_1:+64172769 | Msa0035810:CDS |
| ATTACACTCCTTAATGCTGT+TGG | 0.436203 | 1_1:+64176767 | Msa0035810:CDS |
| CAAACCTATAACTGTTGCCT+TGG | 0.447912 | 1_1:-64176939 | None:intergenic |
| AGGATTCATTTCCTAGAACT+TGG | 0.450671 | 1_1:+64177164 | Msa0035810:intron |
| GAACAACTCACTCTTGCATA+TGG | 0.455763 | 1_1:+64177332 | Msa0035810:three_prime_UTR |
| ATTTCATTTGGCAACAAGCT+AGG | 0.462248 | 1_1:+64172735 | Msa0035810:CDS |
| GATGCTCTTAAAATAAAATC+AGG | 0.465710 | 1_1:+64177010 | Msa0035810:CDS |
| CTCTGGGATATCATCGAGTT+CGG | 0.468185 | 1_1:+64177379 | Msa0035810:three_prime_UTR |
| ACCAGAGAAACATTATAAAT+GGG | 0.469392 | 1_1:+64172883 | Msa0035810:CDS |
| TGGAAACTCTGCTTTCCCTA+TGG | 0.470085 | 1_1:+64172934 | Msa0035810:CDS |
| GAGATAAGGGAAAATAGAAA+TGG | 0.471145 | 1_1:+64175100 | Msa0035810:CDS |
| TGTGAGAGATGGAGAAGGAA+AGG | 0.472902 | 1_1:+64175061 | Msa0035810:CDS |
| AATAGAAATGGTTACAAAGC+TGG | 0.476155 | 1_1:+64175112 | Msa0035810:CDS |
| AGGCTGGTAGGGTAAATGAA+TGG | 0.476703 | 1_1:+64176966 | Msa0035810:CDS |
| AGTTGTTCCTCTTAAGATCT+GGG | 0.480205 | 1_1:-64177317 | None:intergenic |
| GTTCAAGCTCGATGGCAATT+CGG | 0.480229 | 1_1:+64175274 | Msa0035810:CDS |
| ACCAAAGAAAGCATGAGTTA+TGG | 0.484858 | 1_1:-64175558 | None:intergenic |
| AATCCCAATGTATAATGAAA+AGG | 0.485916 | 1_1:+64172967 | Msa0035810:CDS |
| AGGTTTGTTTGAGGCTGGTA+GGG | 0.485982 | 1_1:+64176955 | Msa0035810:CDS |
| GTTATAGGTTTGTTTGAGGC+TGG | 0.487666 | 1_1:+64176950 | Msa0035810:CDS |
| GATGAAAGCTTATCCATCTC+AGG | 0.487892 | 1_1:-64172665 | None:intergenic |
| TTGAAAATCAGCATCAAAGA+TGG | 0.492249 | 1_1:-64175188 | None:intergenic |
| TAAACATAAAGTATGAGATA+AGG | 0.492901 | 1_1:+64175086 | Msa0035810:CDS |
| TTTGTAGAAAGAGTTTATAT+GGG | 0.493598 | 1_1:+64172824 | Msa0035810:CDS |
| AACAGTTATAGGTTTGTTTG+AGG | 0.493816 | 1_1:+64176946 | Msa0035810:CDS |
| TTCCTTGTGGAACAGGAAGT+TGG | 0.500052 | 1_1:+64175533 | Msa0035810:CDS |
| ATGGTTCATGCAGGTACAGC+TGG | 0.500432 | 1_1:+64175680 | Msa0035810:intron |
| TGTGTGACTGTTGTAAACTC+TGG | 0.502343 | 1_1:+64177362 | Msa0035810:three_prime_UTR |
| ACCAAGAAAGCTTCCTGAGA+TGG | 0.505015 | 1_1:+64172652 | None:intergenic |
| AAAGCTGGTGCTCTTAAAGA+AGG | 0.505067 | 1_1:+64175127 | Msa0035810:CDS |
| TTCAACACTGGAACTATAAG+TGG | 0.505104 | 1_1:-64172761 | None:intergenic |
| TTTCATTTGGCAACAAGCTA+GGG | 0.505126 | 1_1:+64172736 | Msa0035810:CDS |
| TATATAGACAGCACCCCACT+TGG | 0.506102 | 1_1:-64176735 | None:intergenic |
| GAGCTGCATGTGGGTTATCA+TGG | 0.506578 | 1_1:+64174848 | Msa0035810:CDS |
| CTATTGCCTTCTTTGTTGTG+GGG | 0.506806 | 1_1:+64177270 | Msa0035810:CDS |
| CTTGATCAAAATCCACAAGT+TGG | 0.507813 | 1_1:+64175247 | Msa0035810:CDS |
| GAGAATGCAAGAGATGTCAT+TGG | 0.511291 | 1_1:+64175502 | Msa0035810:CDS |
| GGCTGGTAGGGTAAATGAAT+GGG | 0.511827 | 1_1:+64176967 | Msa0035810:CDS |
| CACTAAATGAAGCTGGTGGA+TGG | 0.511876 | 1_1:+64175720 | Msa0035810:CDS |
| GGGATTTGCACCAAAACCAT+AGG | 0.516420 | 1_1:-64172950 | None:intergenic |
| TGGGTAGTTACTGAGAAATT+GGG | 0.526326 | 1_1:+64176986 | Msa0035810:CDS |
| AAGGATGATGATATCGAGCT+TGG | 0.528085 | 1_1:+64172914 | Msa0035810:CDS |
| TACGAGCTAGTCTCAAAGGC+TGG | 0.530014 | 1_1:+64175780 | Msa0035810:CDS |
| TATTGCCTTCTTTGTTGTGG+GGG | 0.530266 | 1_1:+64177271 | Msa0035810:CDS |
| CATTCCACTTAGTAATATTG+TGG | 0.530712 | 1_1:+64176882 | Msa0035810:CDS |
| ACTACCAACAATTTCAACAC+TGG | 0.552023 | 1_1:-64172773 | None:intergenic |
| AAAATACCTTGAGGTCACTA+AGG | 0.552124 | 1_1:-64175814 | None:intergenic |
| TGAATAATAATTCTATCAGA+TGG | 0.555057 | 1_1:-64174871 | None:intergenic |
| TAGAATGTGAGAGATGGAGA+AGG | 0.558986 | 1_1:+64175056 | Msa0035810:CDS |
| AAAATGTTATGTCAATGCAT+AGG | 0.560427 | 1_1:+64176915 | Msa0035810:CDS |
| CTCGTATCACGATCGATGGA+AGG | 0.562630 | 1_1:+64177053 | Msa0035810:CDS |
| AAATGAAGCTGGTGGATGGA+AGG | 0.564281 | 1_1:+64175724 | Msa0035810:CDS |
| GCAGTACGAGCTAGTCTCAA+AGG | 0.568633 | 1_1:+64175776 | Msa0035810:CDS |
| TGGAGATAGAATGTGAGAGA+TGG | 0.570198 | 1_1:+64175050 | Msa0035810:CDS |
| ACCACCTGTGTTGCTGATAA+CGG | 0.570982 | 1_1:-64176410 | None:intergenic |
| GGATTTGCACCAAAACCATA+GGG | 0.574114 | 1_1:-64172949 | None:intergenic |
| GTGTGACTGTTGTAAACTCT+GGG | 0.576256 | 1_1:+64177363 | Msa0035810:three_prime_UTR |
| ATTTCAGCACTAAATGAAGC+TGG | 0.577109 | 1_1:+64175713 | Msa0035810:CDS |
| TTATCAATTGGAGCTGCATG+TGG | 0.578331 | 1_1:+64174838 | Msa0035810:CDS |
| ATTGGACTATCATTTCCTTG+TGG | 0.584551 | 1_1:+64175520 | Msa0035810:CDS |
| TGTGTACCTTAGTGACCTCA+AGG | 0.585422 | 1_1:+64175808 | Msa0035810:CDS |
| GTATCCACAATATTACTAAG+TGG | 0.588421 | 1_1:-64176886 | None:intergenic |
| CATTTCCTAGAACTTGGTGT+GGG | 0.589574 | 1_1:+64177170 | Msa0035810:CDS |
| AAGCCTCGTATCACGATCGA+TGG | 0.591131 | 1_1:+64177049 | Msa0035810:CDS |
| TCATTTCCTAGAACTTGGTG+TGG | 0.591922 | 1_1:+64177169 | Msa0035810:CDS |
| CCCAATGTATAATGAAAAGG+AGG | 0.596084 | 1_1:+64172970 | Msa0035810:CDS |
| CAGAAGTAGAAGTTCCCAAG+TGG | 0.598985 | 1_1:+64176720 | Msa0035810:CDS |
| TTAAGGAGTGTAATAATACA+AGG | 0.606049 | 1_1:-64176758 | None:intergenic |
| TTAAACACAATAGAATATGG+TGG | 0.610132 | 1_1:+64175030 | Msa0035810:intron |
| TTGGACTAGTTCAAGCTCGA+TGG | 0.612953 | 1_1:+64175266 | Msa0035810:CDS |
| CACATAAAACTTCTTCCACA+TGG | 0.616199 | 1_1:-64176606 | None:intergenic |
| AAAATGTAAATGTGACCACA+TGG | 0.616797 | 1_1:-64176664 | None:intergenic |
| GCTTGAACTAGTCCAACTTG+TGG | 0.622881 | 1_1:-64175259 | None:intergenic |
| CAGCAACACAGGTGGTCATG+TGG | 0.623641 | 1_1:+64176417 | Msa0035810:CDS |
| AGAAGTAGAAGTTCCCAAGT+GGG | 0.627113 | 1_1:+64176721 | Msa0035810:CDS |
| GATCAAGGAATGGGATGGTG+CGG | 0.636879 | 1_1:-64175231 | None:intergenic |
| CCATATCTTCCACTGTTGTG+CGG | 0.638192 | 1_1:-64175748 | None:intergenic |
| AGAGAAACATTATAAATGGG+AGG | 0.640179 | 1_1:+64172886 | Msa0035810:CDS |
| CCTGTGTTGCTGATAACGGT+AGG | 0.640256 | 1_1:-64176406 | None:intergenic |
| ATGGAAGGACCGCACAACAG+TGG | 0.644477 | 1_1:+64175739 | Msa0035810:CDS |
| TATCAATTGGAGCTGCATGT+GGG | 0.644918 | 1_1:+64174839 | Msa0035810:CDS |
| AACCAACTTCCTGTTCCACA+AGG | 0.645217 | 1_1:-64175535 | None:intergenic |
| GAAGTAGAAGTTCCCAAGTG+GGG | 0.649479 | 1_1:+64176722 | Msa0035810:CDS |
| AATAGAAATCATAAGAAACA+AGG | 0.650357 | 1_1:+64176467 | Msa0035810:CDS |
| GCTCTTAAAATAAAATCAGG+AGG | 0.655234 | 1_1:+64177013 | Msa0035810:CDS |
| CTTCCATCGATCGTGATACG+AGG | 0.657335 | 1_1:-64177052 | None:intergenic |
| TTAATGCTGTTGGAACTCCA+AGG | 0.658326 | 1_1:+64176777 | Msa0035810:CDS |
| CCTACCGTTATCAGCAACAC+AGG | 0.662586 | 1_1:+64176406 | Msa0035810:CDS |
| TCAGCACTAAATGAAGCTGG+TGG | 0.663266 | 1_1:+64175716 | Msa0035810:CDS |
| ATAGCACTGATTCTTCCCAA+AGG | 0.669004 | 1_1:-64177228 | None:intergenic |
| TATGTCAATGCATAGGACCA+AGG | 0.675182 | 1_1:+64176922 | Msa0035810:CDS |
| AAATGTAAATGTGACCACAT+GGG | 0.678994 | 1_1:-64176663 | None:intergenic |
| ATATAGACAGCACCCCACTT+GGG | 0.679378 | 1_1:-64176734 | None:intergenic |
| ACCGTTATCAGCAACACAGG+TGG | 0.685287 | 1_1:+64176409 | Msa0035810:CDS |
| CAAGAAATATAAGAGAAACG+TGG | 0.692109 | 1_1:+64177511 | Msa0035810:three_prime_UTR |
| TGATGCAGAAAGTGACCATG+TGG | 0.707458 | 1_1:+64176591 | Msa0035810:intron |
| CCGGAAGATCATAGCCCATG+TGG | 0.731875 | 1_1:+64176649 | Msa0035810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr1_1:64174353-64174372 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr1_1:64174354-64174373 | None:intergenic | 0.0% |
| !! | GTTATATGATATATATATAT+AGG | + | chr1_1:64173224-64173243 | Msa0035810:intron | 10.0% |
| !! | TATATGATATATATATATAG+GGG | + | chr1_1:64173226-64173245 | Msa0035810:intron | 10.0% |
| !!! | AGCTTAATATATTTTAATAA+TGG | - | chr1_1:64173443-64173462 | None:intergenic | 10.0% |
| !! | TTGAATTTAAGAAAAAAATA+AGG | + | chr1_1:64174006-64174025 | Msa0035810:intron | 10.0% |
| !! | TGAATTTAAGAAAAAAATAA+GGG | + | chr1_1:64174007-64174026 | Msa0035810:intron | 10.0% |
| !!! | GCTTAAATATATTTTAATAA+TGG | + | chr1_1:64174117-64174136 | Msa0035810:intron | 10.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr1_1:64174351-64174370 | None:intergenic | 10.0% |
| !!! | AACATGATTAATTTTAATAA+AGG | + | chr1_1:64175963-64175982 | Msa0035810:intron | 10.0% |
| !!! | AGTTATTTTATTTTAGTAAA+TGG | - | chr1_1:64176297-64176316 | None:intergenic | 10.0% |
| !!! | TAACACTAGTTTTTTTTTAT+AGG | - | chr1_1:64173208-64173227 | None:intergenic | 15.0% |
| !! | ATATGATATATATATATAGG+GGG | + | chr1_1:64173227-64173246 | Msa0035810:intron | 15.0% |
| !! | AATAATCATTACTTATGATA+AGG | - | chr1_1:64173396-64173415 | None:intergenic | 15.0% |
| !!! | TCATAGTTTTTTTTCTTTTA+TGG | - | chr1_1:64173467-64173486 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGTTACTTAACTT+TGG | + | chr1_1:64173622-64173641 | Msa0035810:intron | 15.0% |
| !! | AAAAAATAAGGGAAAAATAA+AGG | + | chr1_1:64174018-64174037 | Msa0035810:intron | 15.0% |
| !! | CAAATAAAAAAAAAATGCTA+CGG | - | chr1_1:64174066-64174085 | None:intergenic | 15.0% |
| !! | AAAGAATAAAAAGCAAAAAT+GGG | - | chr1_1:64174455-64174474 | None:intergenic | 15.0% |
| !! | TAAAGCAAAAAAAATAGTAT+AGG | - | chr1_1:64174507-64174526 | None:intergenic | 15.0% |
| !! | ATTGATAAAAAATTAGTTCA+TGG | - | chr1_1:64174768-64174787 | None:intergenic | 15.0% |
| !!! | TCAATAGTTAAAAAGTTTTA+TGG | + | chr1_1:64174783-64174802 | Msa0035810:intron | 15.0% |
| !! | TATTTAAACACAATAGAATA+TGG | + | chr1_1:64175027-64175046 | Msa0035810:intron | 15.0% |
| !! | AACATTAATCTCAATTAATT+AGG | - | chr1_1:64175325-64175344 | None:intergenic | 15.0% |
| !!! | AATTTTAATATGTGTATGTT+TGG | + | chr1_1:64176056-64176075 | Msa0035810:intron | 15.0% |
| !! | ACTAAAATAAAATAACTAGT+TGG | + | chr1_1:64176300-64176319 | Msa0035810:intron | 15.0% |
| !! | AATAATTATGATGATTTGAT+TGG | - | chr1_1:64176531-64176550 | None:intergenic | 15.0% |
| !!! | TCAAATCATTTTTTATCAAT+AGG | - | chr1_1:64177407-64177426 | None:intergenic | 15.0% |
| !! | TTCAAGTATTACAAAATAAT+TGG | - | chr1_1:64177470-64177489 | None:intergenic | 15.0% |
| !! | TTAACCAAATGAATTTCATT+TGG | + | chr1_1:64172723-64172742 | Msa0035810:CDS | 20.0% |
| !!! | TTTTGTAGAAAGAGTTTATA+TGG | + | chr1_1:64172823-64172842 | Msa0035810:CDS | 20.0% |
| !! | TTTGTAGAAAGAGTTTATAT+GGG | + | chr1_1:64172824-64172843 | Msa0035810:CDS | 20.0% |
| !! | TTTAATGTAAACAAACAAGA+TGG | - | chr1_1:64173098-64173117 | None:intergenic | 20.0% |
| !! | TAATTTCAAAAAACAGAAGT+AGG | + | chr1_1:64173119-64173138 | Msa0035810:intron | 20.0% |
| !!! | TTTTATAGGAAAACACTTAA+TGG | - | chr1_1:64173194-64173213 | None:intergenic | 20.0% |
| !! | AATTAGTGATTCAAAAGTTA+AGG | - | chr1_1:64173605-64173624 | None:intergenic | 20.0% |
| !! | CAGAAAATAATATAATGCTT+AGG | - | chr1_1:64173762-64173781 | None:intergenic | 20.0% |
| !!! | CTAAGCATTATATTATTTTC+TGG | + | chr1_1:64173760-64173779 | Msa0035810:intron | 20.0% |
| !!! | TTTCTAGAAATACATTTCTT+AGG | - | chr1_1:64173799-64173818 | None:intergenic | 20.0% |
| !! | AATAATCATTACTTATGACA+AGG | + | chr1_1:64174181-64174200 | Msa0035810:intron | 20.0% |
| !! | CAAAGAATAAAAAGCAAAAA+TGG | - | chr1_1:64174456-64174475 | None:intergenic | 20.0% |
| !! | GAATATTTATTTGATCTAGT+AGG | + | chr1_1:64174598-64174617 | Msa0035810:intron | 20.0% |
| !! | TGAATAATAATTCTATCAGA+TGG | - | chr1_1:64174874-64174893 | None:intergenic | 20.0% |
| !! | TAAACATAAAGTATGAGATA+AGG | + | chr1_1:64175086-64175105 | Msa0035810:CDS | 20.0% |
| !! | AAACATAAAGTATGAGATAA+GGG | + | chr1_1:64175087-64175106 | Msa0035810:CDS | 20.0% |
| !! | AATAGAAATCATAAGAAACA+AGG | + | chr1_1:64176467-64176486 | Msa0035810:CDS | 20.0% |
| !! | AAATATAGAGAAAATTGCAA+GGG | - | chr1_1:64176501-64176520 | None:intergenic | 20.0% |
| !! | TAAATATAGAGAAAATTGCA+AGG | - | chr1_1:64176502-64176521 | None:intergenic | 20.0% |
| !!! | AATTATTGTACATTTTCTCT+TGG | + | chr1_1:64176544-64176563 | Msa0035810:intron | 20.0% |
| !!! | TATATAGTTTTTTCTTTGTC+CGG | + | chr1_1:64176630-64176649 | Msa0035810:CDS | 20.0% |
| !!! | CTGGTTTACAAATTAAATTT+TGG | - | chr1_1:64176823-64176842 | None:intergenic | 20.0% |
| !! | ATTGTCTTTCTTAAGTTGTT+TGG | + | chr1_1:64172854-64172873 | Msa0035810:CDS | 25.0% |
| ! | AACCAGAGAAACATTATAAA+TGG | + | chr1_1:64172882-64172901 | Msa0035810:CDS | 25.0% |
| ! | ACCAGAGAAACATTATAAAT+GGG | + | chr1_1:64172883-64172902 | Msa0035810:CDS | 25.0% |
| ! | AATCCCAATGTATAATGAAA+AGG | + | chr1_1:64172967-64172986 | Msa0035810:CDS | 25.0% |
| !!! | TGTTTTTGAAGAAAGAGAAA+TGG | - | chr1_1:64174251-64174270 | None:intergenic | 25.0% |
| !!! | AATGTATTTCTAGAAAACAG+AGG | + | chr1_1:64173803-64173822 | Msa0035810:intron | 25.0% |
| ! | ATGTCGTAATAGTAGTATTT+AGG | + | chr1_1:64173975-64173994 | Msa0035810:intron | 25.0% |
| !!! | AGACAGTTTTTTTTCTTCTA+TGG | + | chr1_1:64174092-64174111 | Msa0035810:intron | 25.0% |
| ! | TCTTCAAAAACAACTAAATG+TGG | - | chr1_1:64174243-64174262 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAAGAAAGAGAAA+TGG | + | chr1_1:64174251-64174270 | Msa0035810:intron | 25.0% |
| !!! | AAGAAAGAGAAATGGTTTTT+TGG | + | chr1_1:64174259-64174278 | Msa0035810:intron | 25.0% |
| ! | ACACACACTTAAAATATAGT+TGG | - | chr1_1:64173260-64173279 | None:intergenic | 25.0% |
| ! | GATTTCAAAACCTTAATGAT+TGG | - | chr1_1:64174919-64174938 | None:intergenic | 25.0% |
| ! | GTTAGTTAACTTTATCAACA+TGG | - | chr1_1:64174945-64174964 | None:intergenic | 25.0% |
| !! | ATTTTCTACATTATCTTGCA+TGG | + | chr1_1:64174970-64174989 | Msa0035810:intron | 25.0% |
| ! | TTAAACACAATAGAATATGG+TGG | + | chr1_1:64175030-64175049 | Msa0035810:intron | 25.0% |
| ! | ATTAATTAGGAGTTTCATGA+AGG | - | chr1_1:64175312-64175331 | None:intergenic | 25.0% |
| ! | AAAGTTACACTAACATTAGA+TGG | + | chr1_1:64175423-64175442 | Msa0035810:intron | 25.0% |
| ! | TTAAATTCACAAATACAGCT+TGG | + | chr1_1:64175598-64175617 | Msa0035810:intron | 25.0% |
| ! | ATAAGATTGAAAATACCTTG+AGG | - | chr1_1:64175826-64175845 | None:intergenic | 25.0% |
| !!! | AATTTTAATAAAGGAGTACG+TGG | + | chr1_1:64175972-64175991 | Msa0035810:intron | 25.0% |
| !!! | ATTTTAATAAAGGAGTACGT+GGG | + | chr1_1:64175973-64175992 | Msa0035810:intron | 25.0% |
| !!! | TAGCTTTTAGAAAATCATTG+TGG | + | chr1_1:64176141-64176160 | Msa0035810:intron | 25.0% |
| !! | TTAAGGAGTGTAATAATACA+AGG | - | chr1_1:64176761-64176780 | None:intergenic | 25.0% |
| ! | CATTATCAAAATTCTTACCT+TGG | - | chr1_1:64176797-64176816 | None:intergenic | 25.0% |
| ! | AGTACATGAACTTGATTATA+GGG | - | chr1_1:64176850-64176869 | None:intergenic | 25.0% |
| ! | AAGTACATGAACTTGATTAT+AGG | - | chr1_1:64176851-64176870 | None:intergenic | 25.0% |
| !!! | AGTTCATGTACTTTTTTTGT+AGG | + | chr1_1:64176858-64176877 | Msa0035810:intron | 25.0% |
| ! | AAAATGTTATGTCAATGCAT+AGG | + | chr1_1:64176915-64176934 | Msa0035810:CDS | 25.0% |
| ! | GATGCTCTTAAAATAAAATC+AGG | + | chr1_1:64177010-64177029 | Msa0035810:CDS | 25.0% |
| ! | GTTTATTAATTACCCTTTCA+AGG | + | chr1_1:64177080-64177099 | Msa0035810:intron | 25.0% |
| !! | AGTTCTTTTGTATAGTGATT+GGG | - | chr1_1:64177433-64177452 | None:intergenic | 25.0% |
| !! | TAGTTCTTTTGTATAGTGAT+TGG | - | chr1_1:64177434-64177453 | None:intergenic | 25.0% |
| ! | AGATTTGAAAGTGTGCATTA+TGG | + | chr1_1:64172695-64172714 | Msa0035810:CDS | 30.0% |
| GTTGCCAAATGAAATTCATT+TGG | - | chr1_1:64172730-64172749 | None:intergenic | 30.0% | |
| TCCCATTTATAATGTTTCTC+TGG | - | chr1_1:64172887-64172906 | None:intergenic | 30.0% | |
| AGAGAAACATTATAAATGGG+AGG | + | chr1_1:64172886-64172905 | Msa0035810:CDS | 30.0% | |
| ! | CCTCCTTTTCATTATACATT+GGG | - | chr1_1:64172973-64172992 | None:intergenic | 30.0% |
| ! | ACCTCCTTTTCATTATACAT+TGG | - | chr1_1:64172974-64172993 | None:intergenic | 30.0% |
| AAAAAACAGAAGTAGGTTGT+TGG | + | chr1_1:64173126-64173145 | Msa0035810:intron | 30.0% | |
| CATTACTTATGATAAGGAGA+GGG | - | chr1_1:64173390-64173409 | None:intergenic | 30.0% | |
| TCATTACTTATGATAAGGAG+AGG | - | chr1_1:64173391-64173410 | None:intergenic | 30.0% | |
| ATAGTTTGAATCTCATTGTC+TGG | + | chr1_1:64173578-64173597 | Msa0035810:intron | 30.0% | |
| AATATCAGCAAATGGTGAAT+TGG | - | chr1_1:64173721-64173740 | None:intergenic | 30.0% | |
| TACCATAGTACTATTGGTAA+TGG | - | chr1_1:64173928-64173947 | None:intergenic | 30.0% | |
| GATTACTACCATAGTACTAT+TGG | - | chr1_1:64173934-64173953 | None:intergenic | 30.0% | |
| AAATGCTACGGTGAATTTAA+AGG | - | chr1_1:64174054-64174073 | None:intergenic | 30.0% | |
| CGAGAATCAAAAGCAAAAAA+TGG | + | chr1_1:64174678-64174697 | Msa0035810:intron | 30.0% | |
| CAGGTGTATCAATTATCAAT+TGG | + | chr1_1:64174826-64174845 | Msa0035810:intron | 30.0% | |
| GAGATAAGGGAAAATAGAAA+TGG | + | chr1_1:64175100-64175119 | Msa0035810:CDS | 30.0% | |
| AATAGAAATGGTTACAAAGC+TGG | + | chr1_1:64175112-64175131 | Msa0035810:CDS | 30.0% | |
| TTGAAAATCAGCATCAAAGA+TGG | - | chr1_1:64175191-64175210 | None:intergenic | 30.0% | |
| CACATAAACTCAATCAGATA+TGG | + | chr1_1:64175371-64175390 | Msa0035810:intron | 30.0% | |
| !!! | GTGTAACTTTTTTTTACCCA+CGG | - | chr1_1:64175413-64175432 | None:intergenic | 30.0% |
| ATTAACTGCAAGCATTAAGA+AGG | - | chr1_1:64175462-64175481 | None:intergenic | 30.0% | |
| CATCATCATCTAATATCACA+TGG | - | chr1_1:64175655-64175674 | None:intergenic | 30.0% | |
| CATGTGATATTAGATGATGA+TGG | + | chr1_1:64175653-64175672 | Msa0035810:intron | 30.0% | |
| !! | ATTAGATGATGATGGTGATA+TGG | + | chr1_1:64175661-64175680 | Msa0035810:intron | 30.0% |
| AGCTAAAAAAAAAAACCACG+TGG | + | chr1_1:64175997-64176016 | Msa0035810:intron | 30.0% | |
| TGTATGTTTGGTATTACGAT+GGG | + | chr1_1:64176068-64176087 | Msa0035810:intron | 30.0% | |
| TAAACACTATAGCCTATGTT+TGG | - | chr1_1:64176197-64176216 | None:intergenic | 30.0% | |
| AAATGTAAATGTGACCACAT+GGG | - | chr1_1:64176666-64176685 | None:intergenic | 30.0% | |
| AAAATGTAAATGTGACCACA+TGG | - | chr1_1:64176667-64176686 | None:intergenic | 30.0% | |
| AACTTGATTATAGGGAAAAC+TGG | - | chr1_1:64176842-64176861 | None:intergenic | 30.0% | |
| CATTCCACTTAGTAATATTG+TGG | + | chr1_1:64176882-64176901 | Msa0035810:CDS | 30.0% | |
| GTATCCACAATATTACTAAG+TGG | - | chr1_1:64176889-64176908 | None:intergenic | 30.0% | |
| ! | AACAGTTATAGGTTTGTTTG+AGG | + | chr1_1:64176946-64176965 | Msa0035810:CDS | 30.0% |
| GCTCTTAAAATAAAATCAGG+AGG | + | chr1_1:64177013-64177032 | Msa0035810:CDS | 30.0% | |
| TATTAATTACCCTTTCAAGG+AGG | + | chr1_1:64177083-64177102 | Msa0035810:intron | 30.0% | |
| TCAACAAACAAGTAAGTACA+AGG | - | chr1_1:64177135-64177154 | None:intergenic | 30.0% | |
| ! | TTGTTTGTTGATGTTGAAAC+AGG | + | chr1_1:64177144-64177163 | Msa0035810:intron | 30.0% |
| CAAGAAATATAAGAGAAACG+TGG | + | chr1_1:64177511-64177530 | Msa0035810:three_prime_UTR | 30.0% | |
| ATTTCATTTGGCAACAAGCT+AGG | + | chr1_1:64172735-64172754 | Msa0035810:CDS | 35.0% | |
| TTTCATTTGGCAACAAGCTA+GGG | + | chr1_1:64172736-64172755 | Msa0035810:CDS | 35.0% | |
| TTCAACACTGGAACTATAAG+TGG | - | chr1_1:64172764-64172783 | None:intergenic | 35.0% | |
| ! | AGTTCCAGTGTTGAAATTGT+TGG | + | chr1_1:64172769-64172788 | Msa0035810:CDS | 35.0% |
| ACTACCAACAATTTCAACAC+TGG | - | chr1_1:64172776-64172795 | None:intergenic | 35.0% | |
| !! | TTATAAATGGGAGGCACTTA+AGG | + | chr1_1:64172895-64172914 | Msa0035810:CDS | 35.0% |
| CCCAATGTATAATGAAAAGG+AGG | + | chr1_1:64172970-64172989 | Msa0035810:CDS | 35.0% | |
| !! | CACCATTTGCTGATATTTTC+TGG | + | chr1_1:64173724-64173743 | Msa0035810:intron | 35.0% |
| GTCCAGAAAATATCAGCAAA+TGG | - | chr1_1:64173729-64173748 | None:intergenic | 35.0% | |
| ACAAAACAGTCCATGTAACA+TGG | + | chr1_1:64173889-64173908 | Msa0035810:intron | 35.0% | |
| TGTGCATTTACCATGTTACA+TGG | - | chr1_1:64173902-64173921 | None:intergenic | 35.0% | |
| GTCCATTACCAATAGTACTA+TGG | + | chr1_1:64173923-64173942 | Msa0035810:intron | 35.0% | |
| CTCAACAGATCCAATCATTA+AGG | + | chr1_1:64174906-64174925 | Msa0035810:CDS | 35.0% | |
| CGGTAAAGAAAGTTAGATTC+AGG | - | chr1_1:64175214-64175233 | None:intergenic | 35.0% | |
| !! | ATTTTGATCAAGGAATGGGA+TGG | - | chr1_1:64175239-64175258 | None:intergenic | 35.0% |
| !! | GTGGATTTTGATCAAGGAAT+GGG | - | chr1_1:64175243-64175262 | None:intergenic | 35.0% |
| !! | TGTGGATTTTGATCAAGGAA+TGG | - | chr1_1:64175244-64175263 | None:intergenic | 35.0% |
| !! | CAACTTGTGGATTTTGATCA+AGG | - | chr1_1:64175249-64175268 | None:intergenic | 35.0% |
| CTTGATCAAAATCCACAAGT+TGG | + | chr1_1:64175247-64175266 | Msa0035810:CDS | 35.0% | |
| ATTGGACTATCATTTCCTTG+TGG | + | chr1_1:64175520-64175539 | Msa0035810:CDS | 35.0% | |
| TCCATAACTCATGCTTTCTT+TGG | + | chr1_1:64175557-64175576 | Msa0035810:CDS | 35.0% | |
| ! | ACCAAAGAAAGCATGAGTTA+TGG | - | chr1_1:64175561-64175580 | None:intergenic | 35.0% |
| ! | CATGCTTTCTTTGGTTTCAA+TGG | + | chr1_1:64175566-64175585 | Msa0035810:CDS | 35.0% |
| ATTTCAGCACTAAATGAAGC+TGG | + | chr1_1:64175713-64175732 | Msa0035810:CDS | 35.0% | |
| AAAATACCTTGAGGTCACTA+AGG | - | chr1_1:64175817-64175836 | None:intergenic | 35.0% | |
| AGAAATAACTATGATCCACG+TGG | - | chr1_1:64176015-64176034 | None:intergenic | 35.0% | |
| GTGTATGTTTGGTATTACGA+TGG | + | chr1_1:64176067-64176086 | Msa0035810:intron | 35.0% | |
| ATAGCCTATGTTTGGTATCA+CGG | - | chr1_1:64176189-64176208 | None:intergenic | 35.0% | |
| !! | TTTTCCTGAAGAGATTTGCT+GGG | - | chr1_1:64176443-64176462 | None:intergenic | 35.0% |
| ! | ATTTTCCTGAAGAGATTTGC+TGG | - | chr1_1:64176444-64176463 | None:intergenic | 35.0% |
| AGCAAATCTCTTCAGGAAAA+TGG | + | chr1_1:64176443-64176462 | Msa0035810:CDS | 35.0% | |
| CACATAAAACTTCTTCCACA+TGG | - | chr1_1:64176609-64176628 | None:intergenic | 35.0% | |
| ATTACACTCCTTAATGCTGT+TGG | + | chr1_1:64176767-64176786 | Msa0035810:CDS | 35.0% | |
| ATGGGTAGTTACTGAGAAAT+TGG | + | chr1_1:64176985-64177004 | Msa0035810:CDS | 35.0% | |
| TGGGTAGTTACTGAGAAATT+GGG | + | chr1_1:64176986-64177005 | Msa0035810:CDS | 35.0% | |
| ACATACTATCCTCCTTGAAA+GGG | - | chr1_1:64177095-64177114 | None:intergenic | 35.0% | |
| AACATACTATCCTCCTTGAA+AGG | - | chr1_1:64177096-64177115 | None:intergenic | 35.0% | |
| AGGATTCATTTCCTAGAACT+TGG | + | chr1_1:64177164-64177183 | Msa0035810:intron | 35.0% | |
| ATCTATTGCCTTCTTTGTTG+TGG | + | chr1_1:64177268-64177287 | Msa0035810:CDS | 35.0% | |
| ! | TCTATTGCCTTCTTTGTTGT+GGG | + | chr1_1:64177269-64177288 | Msa0035810:CDS | 35.0% |
| AGTTGTTCCTCTTAAGATCT+GGG | - | chr1_1:64177320-64177339 | None:intergenic | 35.0% | |
| GATGAAAGCTTATCCATCTC+AGG | - | chr1_1:64172668-64172687 | None:intergenic | 40.0% | |
| AAGGATGATGATATCGAGCT+TGG | + | chr1_1:64172914-64172933 | Msa0035810:CDS | 40.0% | |
| GGATTTGCACCAAAACCATA+GGG | - | chr1_1:64172952-64172971 | None:intergenic | 40.0% | |
| ! | GCATCATGCACATTTTCACA+TGG | + | chr1_1:64173292-64173311 | Msa0035810:intron | 40.0% |
| TCTAGAAAACAGAGGCAACA+TGG | + | chr1_1:64173811-64173830 | Msa0035810:intron | 40.0% | |
| ! | CGACATTTTGTAAGCACTTG+TGG | - | chr1_1:64173961-64173980 | None:intergenic | 40.0% |
| ! | GCATCATGCACATTTTCACA+TGG | - | chr1_1:64173292-64173311 | None:intergenic | 40.0% |
| ATTGATACACCTGCAAGCAA+TGG | - | chr1_1:64174819-64174838 | None:intergenic | 40.0% | |
| TTATCAATTGGAGCTGCATG+TGG | + | chr1_1:64174838-64174857 | Msa0035810:CDS | 40.0% | |
| TATCAATTGGAGCTGCATGT+GGG | + | chr1_1:64174839-64174858 | Msa0035810:CDS | 40.0% | |
| TGGAGATAGAATGTGAGAGA+TGG | + | chr1_1:64175050-64175069 | Msa0035810:CDS | 40.0% | |
| TAGAATGTGAGAGATGGAGA+AGG | + | chr1_1:64175056-64175075 | Msa0035810:CDS | 40.0% | |
| AAAGCTGGTGCTCTTAAAGA+AGG | + | chr1_1:64175127-64175146 | Msa0035810:CDS | 40.0% | |
| TGAGATTTGATGAGATCCGT+GGG | + | chr1_1:64175394-64175413 | Msa0035810:intron | 40.0% | |
| GAGAATGCAAGAGATGTCAT+TGG | + | chr1_1:64175502-64175521 | Msa0035810:CDS | 40.0% | |
| CTATCATTTCCTTGTGGAAC+AGG | + | chr1_1:64175526-64175545 | Msa0035810:CDS | 40.0% | |
| TCGTAGCAACCAATTAAGAC+TGG | + | chr1_1:64175849-64175868 | Msa0035810:intron | 40.0% | |
| CGTAGCAACCAATTAAGACT+GGG | + | chr1_1:64175850-64175869 | Msa0035810:intron | 40.0% | |
| TCTACCGTGATACCAAACAT+AGG | + | chr1_1:64176182-64176201 | Msa0035810:intron | 40.0% | |
| ! | TCTGGAACTAAAACAGTTGC+AGG | - | chr1_1:64176704-64176723 | None:intergenic | 40.0% |
| AGAAGTAGAAGTTCCCAAGT+GGG | + | chr1_1:64176721-64176740 | Msa0035810:CDS | 40.0% | |
| TTGGAGTTCCAACAGCATTA+AGG | - | chr1_1:64176778-64176797 | None:intergenic | 40.0% | |
| TTAATGCTGTTGGAACTCCA+AGG | + | chr1_1:64176777-64176796 | Msa0035810:CDS | 40.0% | |
| TATGTCAATGCATAGGACCA+AGG | + | chr1_1:64176922-64176941 | Msa0035810:CDS | 40.0% | |
| CAAACCTATAACTGTTGCCT+TGG | - | chr1_1:64176942-64176961 | None:intergenic | 40.0% | |
| ! | GTTATAGGTTTGTTTGAGGC+TGG | + | chr1_1:64176950-64176969 | Msa0035810:CDS | 40.0% |
| ! | TCATTTCCTAGAACTTGGTG+TGG | + | chr1_1:64177169-64177188 | Msa0035810:CDS | 40.0% |
| !! | CATTTCCTAGAACTTGGTGT+GGG | + | chr1_1:64177170-64177189 | Msa0035810:CDS | 40.0% |
| CATAGCATCCACACAAAAAG+AGG | - | chr1_1:64177202-64177221 | None:intergenic | 40.0% | |
| GATGCTATGATCTTGCCTTT+GGG | + | chr1_1:64177213-64177232 | Msa0035810:CDS | 40.0% | |
| !! | ATAGCACTGATTCTTCCCAA+AGG | - | chr1_1:64177231-64177250 | None:intergenic | 40.0% |
| CAAAGAAGGCAATAGATTGC+AGG | - | chr1_1:64177265-64177284 | None:intergenic | 40.0% | |
| ! | CTATTGCCTTCTTTGTTGTG+GGG | + | chr1_1:64177270-64177289 | Msa0035810:CDS | 40.0% |
| ! | TATTGCCTTCTTTGTTGTGG+GGG | + | chr1_1:64177271-64177290 | Msa0035810:CDS | 40.0% |
| CTATGTTCCCAGATCTTAAG+AGG | + | chr1_1:64177310-64177329 | Msa0035810:exon | 40.0% | |
| GAGTTGTTCCTCTTAAGATC+TGG | - | chr1_1:64177321-64177340 | None:intergenic | 40.0% | |
| GAACAACTCACTCTTGCATA+TGG | + | chr1_1:64177332-64177351 | Msa0035810:three_prime_UTR | 40.0% | |
| TGTGTGACTGTTGTAAACTC+TGG | + | chr1_1:64177362-64177381 | Msa0035810:three_prime_UTR | 40.0% | |
| GTGTGACTGTTGTAAACTCT+GGG | + | chr1_1:64177363-64177382 | Msa0035810:three_prime_UTR | 40.0% | |
| TGGAAACTCTGCTTTCCCTA+TGG | + | chr1_1:64172934-64172953 | Msa0035810:CDS | 45.0% | |
| ! | CTCTGCTTTCCCTATGGTTT+TGG | + | chr1_1:64172940-64172959 | Msa0035810:CDS | 45.0% |
| GGGATTTGCACCAAAACCAT+AGG | - | chr1_1:64172953-64172972 | None:intergenic | 45.0% | |
| TGTTGGCACAATATACGTCG+TGG | + | chr1_1:64173143-64173162 | Msa0035810:intron | 45.0% | |
| CAGCAAATGGTGAATTGGTG+AGG | - | chr1_1:64173716-64173735 | None:intergenic | 45.0% | |
| CTGCAAGCAATGGAACAATG+TGG | - | chr1_1:64174809-64174828 | None:intergenic | 45.0% | |
| CACATTGTTCCATTGCTTGC+AGG | + | chr1_1:64174807-64174826 | Msa0035810:intron | 45.0% | |
| TGTGAGAGATGGAGAAGGAA+AGG | + | chr1_1:64175061-64175080 | Msa0035810:CDS | 45.0% | |
| GCTTGAACTAGTCCAACTTG+TGG | - | chr1_1:64175262-64175281 | None:intergenic | 45.0% | |
| !! | TTGGACTAGTTCAAGCTCGA+TGG | + | chr1_1:64175266-64175285 | Msa0035810:CDS | 45.0% |
| GTTCAAGCTCGATGGCAATT+CGG | + | chr1_1:64175274-64175293 | Msa0035810:CDS | 45.0% | |
| GTGAGATTTGATGAGATCCG+TGG | + | chr1_1:64175393-64175412 | Msa0035810:intron | 45.0% | |
| TTCCTTGTGGAACAGGAAGT+TGG | + | chr1_1:64175533-64175552 | Msa0035810:CDS | 45.0% | |
| AACCAACTTCCTGTTCCACA+AGG | - | chr1_1:64175538-64175557 | None:intergenic | 45.0% | |
| GATGGTGATATGGTTCATGC+AGG | + | chr1_1:64175671-64175690 | Msa0035810:intron | 45.0% | |
| TCAGCACTAAATGAAGCTGG+TGG | + | chr1_1:64175716-64175735 | Msa0035810:CDS | 45.0% | |
| CACTAAATGAAGCTGGTGGA+TGG | + | chr1_1:64175720-64175739 | Msa0035810:CDS | 45.0% | |
| ! | AAATGAAGCTGGTGGATGGA+AGG | + | chr1_1:64175724-64175743 | Msa0035810:CDS | 45.0% |
| CCATATCTTCCACTGTTGTG+CGG | - | chr1_1:64175751-64175770 | None:intergenic | 45.0% | |
| TGTGTACCTTAGTGACCTCA+AGG | + | chr1_1:64175808-64175827 | Msa0035810:CDS | 45.0% | |
| CCAATTAAGACTGGGTCTAG+CGG | + | chr1_1:64175858-64175877 | Msa0035810:intron | 45.0% | |
| !! | CGGTAGGCTTTGAATGTACT+TGG | - | chr1_1:64176393-64176412 | None:intergenic | 45.0% |
| ! | ACCACCTGTGTTGCTGATAA+CGG | - | chr1_1:64176413-64176432 | None:intergenic | 45.0% |
| TGATGCAGAAAGTGACCATG+TGG | + | chr1_1:64176591-64176610 | Msa0035810:intron | 45.0% | |
| CACTTGGGAACTTCTACTTC+TGG | - | chr1_1:64176722-64176741 | None:intergenic | 45.0% | |
| CAGAAGTAGAAGTTCCCAAG+TGG | + | chr1_1:64176720-64176739 | Msa0035810:CDS | 45.0% | |
| GAAGTAGAAGTTCCCAAGTG+GGG | + | chr1_1:64176722-64176741 | Msa0035810:CDS | 45.0% | |
| ATATAGACAGCACCCCACTT+GGG | - | chr1_1:64176737-64176756 | None:intergenic | 45.0% | |
| TATATAGACAGCACCCCACT+TGG | - | chr1_1:64176738-64176757 | None:intergenic | 45.0% | |
| AGGACCAAGGCAACAGTTAT+AGG | + | chr1_1:64176935-64176954 | Msa0035810:CDS | 45.0% | |
| ! | TAGGTTTGTTTGAGGCTGGT+AGG | + | chr1_1:64176954-64176973 | Msa0035810:CDS | 45.0% |
| ! | AGGTTTGTTTGAGGCTGGTA+GGG | + | chr1_1:64176955-64176974 | Msa0035810:CDS | 45.0% |
| AGGCTGGTAGGGTAAATGAA+TGG | + | chr1_1:64176966-64176985 | Msa0035810:CDS | 45.0% | |
| GGCTGGTAGGGTAAATGAAT+GGG | + | chr1_1:64176967-64176986 | Msa0035810:CDS | 45.0% | |
| CAAGGAGGATAGTATGTTGC+TGG | + | chr1_1:64177098-64177117 | Msa0035810:intron | 45.0% | |
| GCATCCACACAAAAAGAGGT+AGG | - | chr1_1:64177198-64177217 | None:intergenic | 45.0% | |
| GGATGCTATGATCTTGCCTT+TGG | + | chr1_1:64177212-64177231 | Msa0035810:CDS | 45.0% | |
| !! | CTCTGGGATATCATCGAGTT+CGG | + | chr1_1:64177379-64177398 | Msa0035810:three_prime_UTR | 45.0% |
| !! | TTATATGATATATATATATA+GGG | + | chr1_1:64173225-64173244 | Msa0035810:intron | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr1_1:64174352-64174371 | None:intergenic | 5.0% |
| !! | TCTATTATTTAAATAAATTT+AGG | + | chr1_1:64176353-64176372 | Msa0035810:intron | 5.0% |
| GACACGCACGAGTAATTACG+TGG | + | chr1_1:64173070-64173089 | Msa0035810:intron | 50.0% | |
| ! | GAGCTGCATGTGGGTTATCA+TGG | + | chr1_1:64174848-64174867 | Msa0035810:CDS | 50.0% |
| GATCAAGGAATGGGATGGTG+CGG | - | chr1_1:64175234-64175253 | None:intergenic | 50.0% | |
| ATGGTTCATGCAGGTACAGC+TGG | + | chr1_1:64175680-64175699 | Msa0035810:intron | 50.0% | |
| ATGCAGGTACAGCTGGTGTT+TGG | + | chr1_1:64175687-64175706 | Msa0035810:intron | 50.0% | |
| CCGCACAACAGTGGAAGATA+TGG | + | chr1_1:64175748-64175767 | Msa0035810:CDS | 50.0% | |
| ! | GCAGTACGAGCTAGTCTCAA+AGG | + | chr1_1:64175776-64175795 | Msa0035810:CDS | 50.0% |
| ! | TACGAGCTAGTCTCAAAGGC+TGG | + | chr1_1:64175780-64175799 | Msa0035810:CDS | 50.0% |
| CCGCTAGACCCAGTCTTAAT+TGG | - | chr1_1:64175861-64175880 | None:intergenic | 50.0% | |
| !! | CCTGTGTTGCTGATAACGGT+AGG | - | chr1_1:64176409-64176428 | None:intergenic | 50.0% |
| CCTACCGTTATCAGCAACAC+AGG | + | chr1_1:64176406-64176425 | Msa0035810:CDS | 50.0% | |
| ACCGTTATCAGCAACACAGG+TGG | + | chr1_1:64176409-64176428 | Msa0035810:CDS | 50.0% | |
| ! | CCACATGGGCTATGATCTTC+CGG | - | chr1_1:64176652-64176671 | None:intergenic | 50.0% |
| AAGCCTCGTATCACGATCGA+TGG | + | chr1_1:64177049-64177068 | Msa0035810:CDS | 50.0% | |
| CTTCCATCGATCGTGATACG+AGG | - | chr1_1:64177055-64177074 | None:intergenic | 50.0% | |
| CTCGTATCACGATCGATGGA+AGG | + | chr1_1:64177053-64177072 | Msa0035810:CDS | 50.0% | |
| ! | GGAGCCTACCTCTTTTTGTG+TGG | + | chr1_1:64177191-64177210 | Msa0035810:CDS | 50.0% |
| TTACTCGTGCGTGTCGTGTG+TGG | - | chr1_1:64173065-64173084 | None:intergenic | 55.0% | |
| ATGGAAGGACCGCACAACAG+TGG | + | chr1_1:64175739-64175758 | Msa0035810:CDS | 55.0% | |
| CAGCAACACAGGTGGTCATG+TGG | + | chr1_1:64176417-64176436 | Msa0035810:CDS | 55.0% | |
| GTGGCCCAGCAAATCTCTTC+AGG | + | chr1_1:64176436-64176455 | Msa0035810:CDS | 55.0% | |
| CCGGAAGATCATAGCCCATG+TGG | + | chr1_1:64176649-64176668 | Msa0035810:CDS | 55.0% | |
| AGGCTCCCACACCAAGTTCT+AGG | - | chr1_1:64177178-64177197 | None:intergenic | 55.0% | |
| ! | GCCTTCTTTGTTGTGGGGGT+TGG | + | chr1_1:64177275-64177294 | Msa0035810:CDS | 55.0% |
| GCCAACCCCCACAACAAAGA+AGG | - | chr1_1:64177279-64177298 | None:intergenic | 55.0% | |
| !! | GTTGTGGGGGTTGGCTATGT+TGG | + | chr1_1:64177284-64177303 | Msa0035810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64172660 | 64177570 | 64172660 | ID=Msa0035810;Name=Msa0035810 |
| chr1_1 | mRNA | 64172660 | 64177570 | 64172660 | ID=Msa0035810-mRNA-1;Parent=Msa0035810;Name=Msa0035810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=11|1|1|1|1|1|9|242|530 |
| chr1_1 | exon | 64172660 | 64172991 | 64172660 | ID=Msa0035810-mRNA-1:exon:20463;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64174829 | 64174927 | 64174829 | ID=Msa0035810-mRNA-1:exon:20464;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64175043 | 64175295 | 64175043 | ID=Msa0035810-mRNA-1:exon:20465;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64175477 | 64175587 | 64175477 | ID=Msa0035810-mRNA-1:exon:20466;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64175693 | 64175829 | 64175693 | ID=Msa0035810-mRNA-1:exon:20467;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64176375 | 64176488 | 64176375 | ID=Msa0035810-mRNA-1:exon:20468;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64176599 | 64176798 | 64176599 | ID=Msa0035810-mRNA-1:exon:20469;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64176880 | 64177074 | 64176880 | ID=Msa0035810-mRNA-1:exon:20470;Parent=Msa0035810-mRNA-1 |
| chr1_1 | exon | 64177166 | 64177570 | 64177166 | ID=Msa0035810-mRNA-1:exon:20471;Parent=Msa0035810-mRNA-1 |
| chr1_1 | five_prime_UTR | 64172660 | 64172670 | 64172660 | ID=Msa0035810-mRNA-1:five_prime_utr;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64172671 | 64172991 | 64172671 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64174829 | 64174927 | 64174829 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64175043 | 64175295 | 64175043 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64175477 | 64175587 | 64175477 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64175693 | 64175829 | 64175693 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64176375 | 64176488 | 64176375 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64176599 | 64176798 | 64176599 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64176880 | 64177074 | 64176880 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | CDS | 64177166 | 64177328 | 64177166 | ID=Msa0035810-mRNA-1:cds;Parent=Msa0035810-mRNA-1 |
| chr1_1 | three_prime_UTR | 64177329 | 64177570 | 64177329 | ID=Msa0035810-mRNA-1:three_prime_utr;Parent=Msa0035810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
