AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872310 MtrunA17_Chr6g0453471 97.207 358 8 2 1 357 1 357 0.0 707
Msa0872310 MtrunA17_Chr7g0217741 60.322 373 68 10 1 357 1 309 4.48e-135 387
Msa0872310 MtrunA17_Chr4g0042671 85.799 169 24 0 1 169 1 169 1.24e-105 316
Msa0872310 MtrunA17_Chr3g0115821 77.444 133 30 0 1 133 1 133 3.76e-78 243
Msa0872310 MtrunA17_Chr8g0349261 65.714 175 52 4 1 171 1 171 9.19e-77 238
Msa0872310 MtrunA17_Chr4g0039971 63.314 169 56 2 1 163 2 170 1.74e-74 234
Msa0872310 MtrunA17_Chr2g0281071 76.154 130 30 1 1 129 1 130 3.40e-74 233
Msa0872310 MtrunA17_Chr4g0048511 73.188 138 36 1 1 137 1 138 4.31e-74 233
Msa0872310 MtrunA17_Chr2g0323411 72.263 137 38 0 1 137 1 137 5.45e-72 227
Msa0872310 MtrunA17_Chr5g0410961 71.756 131 37 0 1 131 1 131 8.75e-70 222
Msa0872310 MtrunA17_Chr1g0203411 61.988 171 57 3 1 171 1 163 7.33e-69 218
Msa0872310 MtrunA17_Chr5g0395281 50.459 218 87 3 1 218 1 197 1.24e-68 218
Msa0872310 MtrunA17_Chr5g0417821 61.935 155 52 1 10 164 5 152 5.98e-67 213
Msa0872310 MtrunA17_Chr5g0434571 55.330 197 78 3 1 194 37 226 4.34e-66 213
Msa0872310 MtrunA17_Chr3g0110351 68.613 137 43 0 1 137 1 137 5.59e-66 211
Msa0872310 MtrunA17_Chr4g0057031 69.231 130 40 0 1 130 1 130 6.38e-65 207
Msa0872310 MtrunA17_Chr4g0037141 55.215 163 66 1 1 163 1 156 8.95e-63 202
Msa0872310 MtrunA17_Chr6g0452271 54.438 169 72 1 1 164 1 169 2.15e-62 202
Msa0872310 MtrunA17_Chr7g0217221 50.732 205 87 5 1 205 1 191 4.01e-62 199
Msa0872310 MtrunA17_Chr3g0103281 59.211 152 62 0 1 152 1 152 5.59e-62 201
Msa0872310 MtrunA17_Chr1g0193371 68.182 132 42 0 1 132 1 132 1.38e-61 201
Msa0872310 MtrunA17_Chr1g0193801 67.969 128 41 0 1 128 1 128 4.07e-61 201
Msa0872310 MtrunA17_Chr7g0228891 67.969 128 41 0 1 128 1 128 5.40e-61 197
Msa0872310 MtrunA17_Chr3g0131121 58.278 151 63 0 1 151 1 151 1.09e-60 197
Msa0872310 MtrunA17_Chr7g0270891 67.188 128 42 0 1 128 1 128 7.25e-60 197
Msa0872310 MtrunA17_Chr4g0058631 53.107 177 79 1 1 177 1 173 9.80e-60 196
Msa0872310 MtrunA17_Chr7g0254411 68.000 125 38 1 1 123 1 125 1.35e-59 195
Msa0872310 MtrunA17_Chr3g0092401 43.946 223 119 3 1 218 2 223 2.24e-59 194
Msa0872310 MtrunA17_Chr4g0060721 51.479 169 68 2 1 169 2 156 2.49e-59 194
Msa0872310 MtrunA17_Chr7g0274581 65.254 118 41 0 1 118 1 118 7.69e-59 189
Msa0872310 MtrunA17_Chr1g0187761 70.690 116 34 0 1 116 1 116 8.11e-59 191
Msa0872310 MtrunA17_Chr1g0167661 73.276 116 31 0 1 116 1 116 2.67e-58 189
Msa0872310 MtrunA17_Chr3g0121241 66.935 124 41 0 5 128 35 158 4.21e-58 190
Msa0872310 MtrunA17_Chr8g0385321 63.281 128 47 0 1 128 1 128 4.72e-58 191
Msa0872310 MtrunA17_Chr5g0435101 64.800 125 44 0 3 127 2 126 6.24e-58 187
Msa0872310 MtrunA17_Chr1g0167691 71.552 116 33 0 1 116 1 116 7.24e-58 188
Msa0872310 MtrunA17_Chr7g0271241 69.531 128 39 0 1 128 1 128 1.66e-57 191
Msa0872310 MtrunA17_Chr4g0042611 90.909 88 8 0 1 88 1 88 2.58e-57 181
Msa0872310 MtrunA17_Chr4g0068061 68.966 116 36 0 1 116 1 116 4.46e-57 189
Msa0872310 MtrunA17_Chr7g0261281 68.644 118 37 0 1 118 1 118 7.34e-57 186
Msa0872310 MtrunA17_Chr2g0309911 62.121 132 45 1 6 137 5 131 1.99e-56 186
Msa0872310 MtrunA17_Chr3g0117091 65.625 128 44 0 1 128 1 128 2.11e-56 187
Msa0872310 MtrunA17_Chr1g0211161 55.280 161 70 1 3 161 4 164 6.97e-56 182
Msa0872310 MtrunA17_Chr7g0247131 69.048 126 37 1 44 169 10 133 9.19e-56 183
Msa0872310 MtrunA17_Chr6g0453211 70.270 111 33 0 1 111 1 111 1.87e-55 184
Msa0872310 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 2.47e-55 184
Msa0872310 MtrunA17_Chr8g0346561 66.949 118 39 0 1 118 1 118 2.77e-55 183
Msa0872310 MtrunA17_Chr7g0275911 67.241 116 38 0 1 116 1 116 3.24e-55 181
Msa0872310 MtrunA17_Chr7g0264641 57.823 147 60 2 1 146 1 146 8.35e-54 178
Msa0872310 MtrunA17_Chr2g0323351 66.949 118 39 0 1 118 1 118 1.36e-53 177
Msa0872310 MtrunA17_Chr1g0194951 62.016 129 49 0 1 129 1 129 1.84e-53 180
Msa0872310 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 1.41e-52 176
Msa0872310 MtrunA17_Chr4g0028311 60.769 130 50 1 1 129 1 130 2.78e-52 176
Msa0872310 MtrunA17_Chr4g0070611 66.387 119 40 0 1 119 1 119 6.09e-52 174
Msa0872310 MtrunA17_Chr2g0330041 54.930 142 57 1 1 135 1 142 9.18e-52 177
Msa0872310 MtrunA17_Chr8g0342521 60.163 123 49 0 1 123 1 123 1.05e-51 175
Msa0872310 MtrunA17_Chr4g0070641 66.387 119 40 0 1 119 1 119 2.17e-51 168
Msa0872310 MtrunA17_Chr8g0342541 59.350 123 50 0 1 123 1 123 3.87e-51 174
Msa0872310 MtrunA17_Chr1g0152011 64.957 117 40 1 1 116 1 117 5.52e-51 173
Msa0872310 MtrunA17_Chr1g0151941 55.797 138 59 2 1 137 1 137 8.22e-51 170
Msa0872310 MtrunA17_Chr5g0400821 64.957 117 40 1 1 116 1 117 9.30e-51 171
Msa0872310 MtrunA17_Chr3g0135311 53.333 150 69 1 1 149 1 150 2.34e-50 171
Msa0872310 MtrunA17_Chr4g0044421 62.400 125 46 1 3 126 2 126 2.63e-50 166
Msa0872310 MtrunA17_Chr5g0397231 63.636 110 40 0 1 110 1 110 6.02e-50 170
Msa0872310 MtrunA17_Chr2g0327351 58.108 148 59 2 1 147 1 146 6.05e-50 169
Msa0872310 MtrunA17_Chr4g0022931 63.248 117 42 1 1 116 1 117 1.55e-49 167
Msa0872310 MtrunA17_Chr4g0022911 61.207 116 44 1 1 115 1 116 1.41e-48 165
Msa0872310 MtrunA17_Chr1g0203441 64.706 119 41 1 1 118 1 119 1.48e-48 164
Msa0872310 MtrunA17_Chr4g0022901 62.931 116 42 1 1 115 1 116 1.56e-48 164
Msa0872310 MtrunA17_Chr7g0269831 66.379 116 39 0 1 116 1 116 2.20e-48 166
Msa0872310 MtrunA17_Chr4g0022881 53.472 144 63 2 1 141 1 143 2.28e-47 160
Msa0872310 MtrunA17_Chr4g0032401 63.964 111 40 0 12 122 17 127 3.82e-47 162
Msa0872310 MtrunA17_Chr4g0054391 63.636 110 39 1 1 109 1 110 5.62e-47 161
Msa0872310 MtrunA17_Chr2g0328771 62.963 108 40 0 12 119 20 127 6.14e-46 159
Msa0872310 MtrunA17_Chr8g0342481 58.475 118 48 1 1 117 1 118 6.15e-46 161
Msa0872310 MtrunA17_Chr4g0072751 63.063 111 40 1 1 110 1 111 9.06e-46 159
Msa0872310 MtrunA17_Chr3g0088461 64.815 108 38 0 9 116 19 126 5.87e-45 157
Msa0872310 MtrunA17_Chr4g0022891 58.407 113 47 0 1 113 1 113 2.62e-43 150
Msa0872310 MtrunA17_Chr6g0470971 60.909 110 43 0 9 118 11 120 1.79e-42 149
Msa0872310 MtrunA17_Chr6g0487491 54.762 126 48 2 1 117 1 126 2.54e-42 148
Msa0872310 MtrunA17_Chr1g0209661 57.658 111 47 0 12 122 27 137 2.66e-41 147
Msa0872310 MtrunA17_Chr1g0194291 54.762 126 56 1 8 133 17 141 4.45e-41 145
Msa0872310 MtrunA17_Chr2g0294811 67.391 92 30 0 1 92 1 92 8.69e-41 139
Msa0872310 MtrunA17_Chr1g0186061 61.165 103 40 0 13 115 21 123 8.95e-41 144
Msa0872310 MtrunA17_Chr4g0055981 58.120 117 49 0 9 125 52 168 1.70e-40 142
Msa0872310 MtrunA17_Chr3g0080861 58.036 112 46 1 10 121 35 145 1.84e-40 149
Msa0872310 MtrunA17_Chr7g0228231 58.879 107 44 0 12 118 14 120 2.68e-40 141
Msa0872310 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 2.90e-40 142
Msa0872310 MtrunA17_Chr8g0354661 59.434 106 43 0 10 115 35 140 4.81e-40 148
Msa0872310 MtrunA17_Chr6g0450101 52.893 121 55 1 1 119 1 121 1.17e-39 139
Msa0872310 MtrunA17_Chr8g0343831 58.475 118 45 1 1 118 1 114 7.81e-39 139
Msa0872310 MtrunA17_Chr1g0194301 53.043 115 54 0 8 122 29 143 9.40e-39 139
Msa0872310 MtrunA17_Chr3g0099131 58.654 104 43 0 12 115 41 144 1.06e-38 144
Msa0872310 MtrunA17_Chr2g0322521 58.879 107 44 0 9 115 26 132 1.57e-38 141
Msa0872310 MtrunA17_Chr5g0434911 54.054 111 51 0 7 117 16 126 1.82e-37 135
Msa0872310 MtrunA17_Chr7g0240821 56.604 106 46 0 17 122 6 111 2.44e-37 134
Msa0872310 MtrunA17_Chr5g0434931 55.140 107 48 0 11 117 34 140 2.65e-37 135
Msa0872310 MtrunA17_Chr7g0220341 57.273 110 45 1 10 117 23 132 2.97e-37 135
Msa0872310 MtrunA17_Chr2g0323321 62.245 98 36 1 1 98 1 97 4.31e-37 129
Msa0872310 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 8.47e-37 128
Msa0872310 MtrunA17_Chr1g0154031 54.808 104 47 0 12 115 76 179 1.26e-36 137
Msa0872310 MtrunA17_Chr1g0180391 55.238 105 47 0 12 116 19 123 1.43e-36 132
Msa0872310 MtrunA17_Chr5g0395221 65.909 88 30 0 1 88 1 88 3.00e-36 126
Msa0872310 MtrunA17_Chr2g0293911 52.381 126 59 1 8 133 20 144 5.25e-36 133
Msa0872310 MtrunA17_Chr8g0342531 49.138 116 54 1 1 111 1 116 6.82e-36 128
Msa0872310 MtrunA17_Chr4g0068921 53.913 115 53 0 8 122 20 134 1.92e-35 128
Msa0872310 MtrunA17_Chr7g0228991 55.140 107 48 0 11 117 28 134 2.40e-35 130
Msa0872310 MtrunA17_Chr4g0042621 75.309 81 20 0 89 169 15 95 6.18e-35 130
Msa0872310 MtrunA17_Chr5g0434831 55.660 106 47 0 11 116 6 111 6.60e-35 126
Msa0872310 MtrunA17_Chr8g0360111 56.863 102 44 0 11 112 24 125 1.07e-34 128
Msa0872310 MtrunA17_Chr1g0192411 35.349 215 117 5 8 210 8 212 2.33e-34 130
Msa0872310 MtrunA17_Chr2g0327821 51.923 104 50 0 12 115 6 109 1.15e-33 124
Msa0872310 MtrunA17_Chr5g0434841 53.774 106 49 0 11 116 19 124 1.54e-33 126
Msa0872310 MtrunA17_Chr4g0030881 51.818 110 46 1 13 115 8 117 1.99e-33 124
Msa0872310 MtrunA17_Chr5g0440781 46.032 126 66 2 13 137 13 137 2.72e-33 122
Msa0872310 MtrunA17_Chr8g0342461 56.667 90 38 1 1 89 1 90 7.83e-33 119
Msa0872310 MtrunA17_Chr5g0441141 46.032 126 66 2 13 137 13 137 1.04e-32 123
Msa0872310 MtrunA17_Chr5g0440761 46.032 126 66 2 13 137 13 137 1.21e-32 122
Msa0872310 MtrunA17_Chr8g0342471 56.667 90 38 1 1 89 1 90 2.49e-32 118
Msa0872310 MtrunA17_Chr8g0334881 46.018 113 59 2 8 119 6 117 6.03e-31 119
Msa0872310 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 1.59e-30 117
Msa0872310 MtrunA17_Chr3g0099141 54.023 87 40 0 8 94 36 122 1.72e-30 113
Msa0872310 MtrunA17_Chr5g0441131 46.552 116 60 2 10 124 7 121 3.41e-30 114
Msa0872310 MtrunA17_Chr5g0401731 47.706 109 56 1 14 122 15 122 4.66e-30 117
Msa0872310 MtrunA17_Chr3g0093811 58.824 85 35 0 44 128 14 98 7.01e-29 112
Msa0872310 MtrunA17_Chr6g0454921 45.946 111 59 1 14 124 15 124 2.00e-28 110
Msa0872310 MtrunA17_Chr4g0053431 38.217 157 95 2 14 169 5 160 1.17e-27 109
Msa0872310 MtrunA17_Chr3g0133601 49.074 108 54 1 8 115 31 137 1.72e-27 107
Msa0872310 MtrunA17_Chr4g0008551 47.788 113 54 2 14 126 38 145 2.91e-27 110
Msa0872310 MtrunA17_Chr7g0238631 42.969 128 71 2 12 138 111 237 5.60e-26 108
Msa0872310 MtrunA17_Chr7g0229131 50.526 95 46 1 44 138 4 97 1.65e-24 98.6
Msa0872310 MtrunA17_Chr5g0429661 44.231 104 57 1 12 115 120 222 8.31e-24 100
Msa0872310 MtrunA17_Chr6g0480581 38.129 139 77 3 14 148 4 137 1.64e-23 97.4
Msa0872310 MtrunA17_Chr7g0229101 62.857 70 26 0 44 113 4 73 1.82e-23 96.7
Msa0872310 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 3.30e-23 92.4
Msa0872310 MtrunA17_Chr6g0453751 48.913 92 38 2 11 93 19 110 1.02e-22 92.4
Msa0872310 MtrunA17_Chr3g0117511 41.818 110 63 1 9 118 178 286 6.51e-22 96.3
Msa0872310 MtrunA17_Chr4g0058991 41.818 110 63 1 9 118 204 312 6.91e-22 96.3
Msa0872310 MtrunA17_Chr5g0434901 60.294 68 27 0 46 113 7 74 2.44e-21 88.2
Msa0872310 MtrunA17_Chr3g0139671 40.952 105 61 1 12 116 83 186 3.60e-21 95.1
Msa0872310 MtrunA17_Chr3g0139671 33.962 106 68 2 14 118 33 137 3.36e-12 67.8
Msa0872310 MtrunA17_Chr6g0460661 40.517 116 67 2 14 129 16 129 5.11e-21 88.6
Msa0872310 MtrunA17_Chr6g0460671 36.364 132 82 2 14 145 99 228 9.36e-21 92.0
Msa0872310 MtrunA17_Chr1g0157731 40.000 105 62 1 12 116 89 192 2.42e-20 92.8
Msa0872310 MtrunA17_Chr1g0157731 32.075 106 70 2 14 118 39 143 1.64e-11 65.9
Msa0872310 MtrunA17_Chr5g0437321 42.857 105 56 2 8 112 16 116 2.47e-20 89.7
Msa0872310 MtrunA17_Chr4g0042501 41.176 102 59 1 14 115 105 205 2.11e-19 89.0
Msa0872310 MtrunA17_Chr5g0417621 38.261 115 65 2 2 116 127 235 2.70e-19 88.6
Msa0872310 MtrunA17_Chr3g0125801 40.367 109 62 2 8 115 10 116 3.71e-19 86.7
Msa0872310 MtrunA17_Chr7g0228531 38.532 109 65 2 10 118 216 322 9.61e-19 87.0
Msa0872310 MtrunA17_Chr5g0395231 60.714 56 22 0 78 133 5 60 1.24e-18 84.3
Msa0872310 MtrunA17_Chr7g0254261 37.162 148 81 3 1 142 81 222 6.07e-18 84.0
Msa0872310 MtrunA17_Chr5g0397841 41.837 98 56 1 12 109 108 204 1.27e-17 84.0
Msa0872310 MtrunA17_Chr7g0247141 65.957 47 15 1 1 46 1 47 4.98e-17 74.7
Msa0872310 MtrunA17_Chr7g0228401 43.023 86 48 1 25 110 290 374 4.85e-16 79.3
Msa0872310 MtrunA17_Chr7g0228481 36.634 101 62 2 10 110 216 314 7.99e-16 78.2
Msa0872310 MtrunA17_Chr1g0177901 41.860 86 49 1 25 110 5 89 1.56e-15 74.7
Msa0872310 MtrunA17_Chr7g0238651 36.667 120 71 3 17 132 10 128 3.92e-15 75.9
Msa0872310 MtrunA17_Chr1g0193901 53.448 58 26 1 12 68 11 68 4.33e-15 70.9
Msa0872310 MtrunA17_Chr1g0193891 53.448 58 26 1 12 68 11 68 4.33e-15 70.9
Msa0872310 MtrunA17_Chr1g0193871 53.448 58 26 1 12 68 11 68 4.33e-15 70.9
Msa0872310 MtrunA17_Chr1g0193881 53.448 58 26 1 12 68 11 68 4.33e-15 70.9
Msa0872310 MtrunA17_Chr5g0416341 39.394 99 59 1 17 115 29 126 5.26e-15 75.9
Msa0872310 MtrunA17_Chr7g0233061 35.652 115 53 2 14 119 180 282 1.79e-14 73.9
Msa0872310 MtrunA17_Chr8g0362231 36.364 99 62 1 17 115 25 122 2.89e-13 70.5
Msa0872310 MtrunA17_Chr3g0145551 72.973 37 10 0 92 128 2 38 2.75e-12 62.0
Msa0872310 MtrunA17_Chr5g0434871 55.814 43 19 0 74 116 2 44 6.67e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872310 AT5G15310.1 55.026 378 97 8 1 357 1 326 1.35e-128 372
Msa0872310 AT5G15310.2 57.263 358 109 9 1 357 1 315 2.11e-124 360
Msa0872310 AT5G15310.4 87.719 171 19 1 1 171 1 169 5.38e-107 313
Msa0872310 AT3G61250.1 67.630 173 52 1 1 173 1 169 7.12e-83 254
Msa0872310 AT1G34670.1 78.519 135 29 0 1 135 1 135 2.75e-78 244
Msa0872310 AT3G02940.2 77.444 133 30 0 1 133 1 133 1.51e-77 241
Msa0872310 AT3G02940.1 77.444 133 30 0 1 133 1 133 3.83e-77 240
Msa0872310 AT3G02940.3 77.444 133 30 0 1 133 1 133 3.83e-77 240
Msa0872310 AT4G21440.1 70.199 151 45 0 1 151 1 151 2.58e-76 239
Msa0872310 AT4G05100.1 77.692 130 28 1 1 129 1 130 7.58e-75 234
Msa0872310 AT5G16770.4 75.940 133 32 0 1 133 1 133 2.13e-74 233
Msa0872310 AT5G16770.3 75.940 133 32 0 1 133 1 133 2.13e-74 233
Msa0872310 AT5G16770.1 75.940 133 32 0 1 133 1 133 5.71e-74 233
Msa0872310 AT5G16770.2 75.940 133 32 0 1 133 1 133 5.71e-74 233
Msa0872310 AT4G28110.1 64.417 163 58 0 1 163 1 163 9.71e-73 228
Msa0872310 AT5G10280.1 70.677 133 39 0 1 133 1 133 1.20e-70 224
Msa0872310 AT5G65230.1 71.642 134 38 0 1 134 1 134 1.32e-70 223
Msa0872310 AT5G60890.1 73.077 130 35 0 1 130 1 130 8.33e-69 218
Msa0872310 AT5G54230.1 72.263 137 38 0 1 137 1 137 1.04e-68 218
Msa0872310 AT4G17785.2 72.388 134 36 1 1 133 1 134 1.08e-68 219
Msa0872310 AT4G17785.1 72.388 134 36 1 1 133 1 134 1.35e-68 219
Msa0872310 AT5G61420.2 72.656 128 35 0 1 128 1 128 1.52e-67 217
Msa0872310 AT5G07690.1 73.438 128 34 0 1 128 1 128 2.56e-67 215
Msa0872310 AT5G16600.1 65.333 150 50 1 1 150 1 148 1.20e-66 213
Msa0872310 AT1G18570.1 74.219 128 32 1 1 127 1 128 1.25e-65 211
Msa0872310 AT4G34990.1 61.039 154 60 0 1 154 1 154 1.84e-65 209
Msa0872310 AT5G07700.1 71.875 128 36 0 1 128 1 128 2.47e-65 210
Msa0872310 AT5G07700.2 71.875 128 36 0 1 128 1 128 2.47e-65 210
Msa0872310 AT4G22680.1 70.769 130 38 0 1 130 1 130 2.55e-65 208
Msa0872310 AT1G74080.1 65.986 147 49 1 1 146 1 147 4.13e-65 209
Msa0872310 AT4G12350.1 65.068 146 51 0 1 146 1 146 4.77e-65 208
Msa0872310 AT1G66230.1 71.094 128 37 0 1 128 1 128 6.58e-65 207
Msa0872310 AT2G16720.1 56.774 155 67 0 1 155 1 155 5.55e-63 202
Msa0872310 AT3G23250.1 60.927 151 52 2 1 144 1 151 1.76e-62 201
Msa0872310 AT2G31180.1 74.576 118 30 0 1 118 1 118 2.39e-62 200
Msa0872310 AT5G62470.2 55.621 169 69 3 1 169 1 163 2.58e-62 203
Msa0872310 AT3G47600.1 54.971 171 74 2 1 169 1 170 2.61e-62 202
Msa0872310 AT1G22640.1 63.504 137 50 0 1 137 1 137 1.15e-61 198
Msa0872310 AT5G56110.1 58.553 152 63 0 1 152 1 152 1.29e-61 200
Msa0872310 AT5G26660.1 69.531 128 39 0 1 128 1 128 1.54e-61 201
Msa0872310 AT4G09460.1 64.234 137 49 0 1 137 1 137 5.32e-61 196
Msa0872310 AT4G38620.1 64.844 128 45 0 1 128 1 128 1.28e-60 196
Msa0872310 AT5G62470.1 55.621 169 68 4 1 169 1 162 1.96e-60 198
Msa0872310 AT1G08810.1 64.234 137 48 1 1 137 1 136 4.07e-60 195
Msa0872310 AT1G57560.1 65.625 128 44 0 1 128 1 128 6.33e-60 196
Msa0872310 AT1G35515.1 66.667 126 42 0 1 126 1 126 8.30e-60 192
Msa0872310 AT5G14340.1 59.441 143 58 0 1 143 13 155 1.13e-59 194
Msa0872310 AT1G57560.2 65.625 128 44 0 1 128 1 128 1.13e-59 194
Msa0872310 AT4G01680.3 58.170 153 64 0 1 153 1 153 1.36e-59 192
Msa0872310 AT1G18710.1 63.571 140 51 0 1 140 1 140 1.90e-59 193
Msa0872310 AT1G06180.1 74.138 116 30 0 1 116 1 116 3.06e-59 192
Msa0872310 AT1G74650.1 68.908 119 37 0 1 119 1 119 3.42e-59 194
Msa0872310 AT4G01680.1 58.170 153 64 0 1 153 1 153 3.55e-59 194
Msa0872310 AT1G09540.1 61.224 147 56 1 1 147 1 146 5.15e-59 195
Msa0872310 AT1G74430.1 65.185 135 47 0 1 135 1 135 5.74e-59 192
Msa0872310 AT3G28910.1 56.805 169 70 2 1 169 1 166 6.72e-59 193
Msa0872310 AT3G13540.1 64.000 125 45 0 4 128 15 139 2.13e-58 189
Msa0872310 AT5G15310.3 43.051 295 95 8 84 357 5 247 4.08e-58 189
Msa0872310 AT5G62320.1 62.406 133 43 1 2 127 3 135 6.49e-57 186
Msa0872310 AT3G28470.1 58.929 168 59 3 1 158 1 168 7.53e-56 185
Msa0872310 AT4G01680.2 53.939 165 64 1 1 153 1 165 1.20e-55 186
Msa0872310 AT5G49330.1 67.241 116 38 0 1 116 1 116 3.24e-55 184
Msa0872310 AT1G56160.1 67.241 116 38 0 2 117 4 119 4.57e-55 182
Msa0872310 AT1G79180.1 64.957 117 41 0 2 118 4 120 5.13e-55 182
Msa0872310 AT1G16490.1 65.517 116 40 0 2 117 4 119 1.36e-54 181
Msa0872310 AT3G12720.1 61.983 121 46 0 6 126 16 136 6.57e-54 180
Msa0872310 AT1G63910.1 55.797 138 61 0 1 138 1 138 9.95e-53 179
Msa0872310 AT2G47460.1 55.714 140 62 0 1 140 1 140 1.34e-52 178
Msa0872310 AT3G62610.1 65.517 116 40 0 1 116 1 116 1.85e-52 177
Msa0872310 AT3G13890.2 62.931 116 43 0 1 116 1 116 8.22e-52 176
Msa0872310 AT5G23000.1 64.103 117 41 1 1 116 1 117 1.86e-51 174
Msa0872310 AT2G36890.1 61.417 127 48 1 1 126 1 127 6.12e-51 172
Msa0872310 AT2G36890.2 61.417 127 48 1 1 126 42 168 1.26e-50 172
Msa0872310 AT3G49690.1 65.812 117 39 1 1 116 1 117 2.52e-50 171
Msa0872310 AT3G12820.1 62.931 116 43 0 3 118 5 120 1.18e-49 167
Msa0872310 AT5G57620.1 64.103 117 41 1 1 116 1 117 1.25e-49 169
Msa0872310 AT5G65790.1 64.957 117 40 1 1 116 1 117 2.99e-49 170
Msa0872310 AT3G13890.1 58.400 125 43 1 1 116 1 125 1.06e-48 168
Msa0872310 AT1G79180.2 50.667 150 41 1 2 118 4 153 3.27e-48 166
Msa0872310 AT4G37780.1 59.829 117 46 1 1 116 1 117 5.05e-48 164
Msa0872310 AT5G12870.1 64.815 108 38 0 12 119 18 125 3.24e-46 159
Msa0872310 AT5G40330.1 43.931 173 83 2 13 179 13 177 1.31e-44 153
Msa0872310 AT3G08500.1 63.303 109 40 0 8 116 26 134 4.14e-44 155
Msa0872310 AT5G14750.1 62.500 104 39 0 13 116 17 120 2.17e-43 149
Msa0872310 AT1G48000.1 58.407 113 47 0 10 122 30 142 7.38e-42 146
Msa0872310 AT5G35550.1 64.486 107 38 0 12 118 14 120 1.27e-41 146
Msa0872310 AT5G40350.1 58.716 109 45 0 12 120 17 125 1.31e-41 145
Msa0872310 AT5G52600.1 50.000 148 65 1 9 147 9 156 1.57e-41 144
Msa0872310 AT2G26960.1 57.522 113 47 1 9 121 17 128 5.92e-41 149
Msa0872310 AT4G25560.1 60.377 106 42 0 13 118 11 116 8.04e-41 145
Msa0872310 AT5G52260.1 63.208 106 39 0 13 118 13 118 8.11e-41 144
Msa0872310 AT3G27920.1 60.000 105 42 0 13 117 15 119 9.81e-41 143
Msa0872310 AT5G55020.1 60.714 112 43 1 10 121 24 134 1.51e-40 149
Msa0872310 AT4G26930.1 57.143 112 47 1 10 121 17 127 2.62e-40 146
Msa0872310 AT5G06100.1 58.333 108 45 0 8 115 28 135 2.93e-40 147
Msa0872310 AT2G32460.1 60.000 105 42 0 11 115 17 121 3.01e-40 148
Msa0872310 AT2G32460.2 60.000 105 42 0 11 115 5 109 3.02e-40 148
Msa0872310 AT3G24310.1 60.952 105 41 0 11 115 17 121 3.53e-40 143
Msa0872310 AT3G11440.2 58.654 104 43 0 12 115 41 144 5.93e-40 147
Msa0872310 AT5G06100.5 58.333 108 45 0 8 115 28 135 8.47e-40 147
Msa0872310 AT5G06100.2 58.333 108 45 0 8 115 28 135 8.47e-40 147
Msa0872310 AT5G06100.3 58.333 108 45 0 8 115 28 135 8.47e-40 147
Msa0872310 AT5G06100.4 58.333 108 45 0 8 115 28 135 8.47e-40 147
Msa0872310 AT3G48920.1 57.143 105 45 0 13 117 19 123 1.11e-39 141
Msa0872310 AT4G13480.1 61.165 103 40 0 13 115 7 109 1.34e-39 141
Msa0872310 AT3G27810.1 55.455 110 49 0 12 121 20 129 1.37e-39 140
Msa0872310 AT3G30210.1 60.577 104 41 0 11 114 26 129 1.40e-39 141
Msa0872310 AT5G26660.2 73.256 86 23 0 43 128 12 97 1.53e-39 142
Msa0872310 AT3G01530.1 58.095 105 44 0 12 116 25 129 1.57e-39 139
Msa0872310 AT3G11440.3 58.654 104 43 0 12 115 41 144 1.78e-39 147
Msa0872310 AT3G11440.4 58.654 104 43 0 12 115 41 144 1.78e-39 147
Msa0872310 AT3G11440.1 58.654 104 43 0 12 115 41 144 1.78e-39 147
Msa0872310 AT1G25340.1 53.913 115 53 0 13 127 19 133 2.38e-38 139
Msa0872310 AT1G66370.1 55.652 115 47 1 1 115 1 111 1.16e-37 135
Msa0872310 AT2G47190.1 52.252 111 53 0 12 122 20 130 1.52e-37 136
Msa0872310 AT3G06490.1 53.659 123 57 0 8 130 15 137 6.90e-37 135
Msa0872310 AT1G68320.1 54.054 111 51 0 12 122 19 129 1.87e-36 134
Msa0872310 AT3G53200.1 56.731 104 45 0 12 115 9 112 8.27e-36 130
Msa0872310 AT3G47600.2 51.181 127 59 2 45 169 39 164 2.64e-34 129
Msa0872310 AT3G46130.1 54.286 105 48 0 11 115 8 112 4.65e-34 126
Msa0872310 AT1G66380.1 60.000 105 42 0 11 115 7 111 5.44e-34 122
Msa0872310 AT5G59780.3 54.369 103 47 0 13 115 9 111 6.80e-34 125
Msa0872310 AT5G49620.1 52.174 115 55 0 8 122 22 136 7.16e-34 127
Msa0872310 AT1G56650.1 52.381 126 52 1 11 128 7 132 1.08e-33 125
Msa0872310 AT1G25340.2 51.304 115 51 1 13 127 19 128 1.15e-33 126
Msa0872310 AT1G25340.3 51.304 115 51 1 13 127 19 128 2.99e-33 125
Msa0872310 AT1G66390.1 58.095 105 44 0 11 115 7 111 5.34e-33 123
Msa0872310 AT3G60460.1 49.541 109 53 2 12 119 11 118 1.45e-31 121
Msa0872310 AT5G49620.2 44.526 137 62 1 8 130 22 158 2.31e-30 118
Msa0872310 AT5G14750.3 64.103 78 25 1 39 116 12 86 1.08e-29 112
Msa0872310 AT5G35550.2 71.622 74 21 0 45 118 50 123 2.42e-29 114
Msa0872310 AT3G12820.2 70.423 71 21 0 48 118 2 72 2.57e-29 112
Msa0872310 AT2G26950.1 44.828 116 62 2 9 124 13 126 1.25e-28 115
Msa0872310 AT5G40350.2 61.842 76 29 0 45 120 5 80 2.48e-28 108
Msa0872310 AT1G18960.1 46.721 122 58 4 14 133 10 126 6.34e-28 111
Msa0872310 AT1G22640.3 59.494 79 32 0 59 137 2 80 1.72e-27 107
Msa0872310 AT4G37260.1 47.664 107 55 1 14 120 13 118 5.40e-27 109
Msa0872310 AT3G53200.2 61.039 77 30 0 39 115 3 79 5.90e-27 106
Msa0872310 AT5G59780.2 63.014 73 27 0 43 115 18 90 8.39e-27 106
Msa0872310 AT3G27810.2 57.143 77 33 0 45 121 4 80 1.16e-26 104
Msa0872310 AT1G71030.1 54.444 90 40 1 38 127 7 95 1.18e-26 105
Msa0872310 AT3G46130.3 63.889 72 26 0 44 115 9 80 1.53e-26 105
Msa0872310 AT3G46130.4 63.014 73 27 0 43 115 18 90 1.76e-26 105
Msa0872310 AT2G23290.1 48.077 104 53 1 14 117 13 115 2.18e-26 107
Msa0872310 AT5G67300.1 46.078 102 54 1 14 115 6 106 6.89e-26 105
Msa0872310 AT3G50060.1 45.192 104 56 1 14 117 6 108 1.61e-25 104
Msa0872310 AT1G71030.2 57.143 77 33 0 51 127 5 81 4.11e-25 100
Msa0872310 AT2G39880.1 47.170 106 47 2 14 115 50 150 3.52e-24 102
Msa0872310 AT3G55730.1 46.226 106 56 1 14 119 56 160 7.53e-24 101
Msa0872310 AT5G02320.1 44.762 105 57 1 12 116 125 228 8.00e-24 102
Msa0872310 AT5G02320.2 44.762 105 57 1 12 116 125 228 8.00e-24 102
Msa0872310 AT3G23250.2 53.763 93 36 2 59 144 2 94 8.44e-24 98.6
Msa0872310 AT5G02320.3 44.762 105 57 1 12 116 65 168 9.98e-24 102
Msa0872310 AT3G09230.1 38.095 147 74 2 14 144 55 200 1.10e-23 101
Msa0872310 AT4G18770.1 42.727 110 62 1 9 118 212 320 4.71e-23 99.8
Msa0872310 AT5G58850.1 42.991 107 60 1 12 118 103 208 5.21e-23 99.8
Msa0872310 AT1G66380.3 66.197 71 24 0 45 115 8 78 5.35e-23 92.8
Msa0872310 AT3G09370.1 45.192 104 56 1 12 115 128 230 6.67e-23 100
Msa0872310 AT3G09370.1 33.019 106 69 2 14 118 78 182 5.23e-11 64.3
Msa0872310 AT3G09370.2 45.192 104 56 1 12 115 133 235 6.69e-23 100
Msa0872310 AT3G09370.2 33.019 106 69 2 14 118 83 187 5.08e-11 64.3
Msa0872310 AT1G17950.1 31.088 193 115 4 14 206 5 179 6.81e-23 96.7
Msa0872310 AT3G27785.1 43.925 107 59 1 9 115 184 289 8.32e-23 99.4
Msa0872310 AT3G09370.3 45.192 104 56 1 12 115 141 243 8.66e-23 99.8
Msa0872310 AT3G09370.3 33.019 106 69 2 14 118 91 195 5.72e-11 64.3
Msa0872310 AT5G40360.1 39.837 123 71 3 12 133 156 276 1.19e-22 97.8
Msa0872310 AT5G11050.1 41.905 105 60 1 14 118 105 208 1.36e-22 98.6
Msa0872310 AT1G66380.2 51.020 98 47 1 11 107 7 104 1.62e-22 91.7
Msa0872310 AT5G11510.3 41.905 105 60 1 12 116 79 182 4.11e-21 95.5
Msa0872310 AT5G11510.1 41.905 105 60 1 12 116 79 182 4.11e-21 95.5
Msa0872310 AT5G11510.4 41.905 105 60 1 12 116 79 182 4.11e-21 95.5
Msa0872310 AT5G11510.2 41.905 105 60 1 12 116 79 182 4.97e-21 95.1
Msa0872310 AT5G11510.5 41.905 105 60 1 12 116 79 182 5.03e-21 95.1
Msa0872310 AT1G69560.1 41.284 109 61 2 9 116 102 208 9.38e-21 92.0
Msa0872310 AT1G69560.2 41.284 109 61 2 9 116 118 224 1.14e-20 92.0
Msa0872310 AT1G73410.1 42.453 106 60 1 10 115 2 106 1.46e-20 89.7
Msa0872310 AT4G32730.1 40.000 105 62 1 12 116 85 188 1.57e-20 93.6
Msa0872310 AT4G32730.1 33.962 106 68 2 14 118 35 139 5.75e-12 67.4
Msa0872310 AT5G14750.4 65.517 58 20 0 59 116 2 59 1.60e-20 87.0
Msa0872310 AT5G14750.2 65.517 58 20 0 59 116 2 59 1.60e-20 87.0
Msa0872310 AT4G32730.5 40.000 105 62 1 12 116 85 188 1.76e-20 93.6
Msa0872310 AT4G32730.5 33.962 106 68 2 14 118 35 139 6.37e-12 67.4
Msa0872310 AT4G32730.4 40.000 105 62 1 12 116 85 188 1.76e-20 93.6
Msa0872310 AT4G32730.4 33.962 106 68 2 14 118 35 139 6.37e-12 67.4
Msa0872310 AT4G32730.3 40.000 105 62 1 12 116 85 188 1.76e-20 93.6
Msa0872310 AT4G32730.3 33.962 106 68 2 14 118 35 139 6.37e-12 67.4
Msa0872310 AT4G32730.2 40.000 105 62 1 12 116 85 188 1.76e-20 93.6
Msa0872310 AT4G32730.2 33.962 106 68 2 14 118 35 139 6.37e-12 67.4
Msa0872310 AT5G61420.1 79.167 48 10 0 81 128 2 49 3.85e-20 89.7
Msa0872310 AT1G73410.2 42.453 106 60 1 10 115 2 106 3.89e-20 87.8
Msa0872310 AT4G33450.1 37.168 113 65 2 3 115 13 119 6.30e-20 88.2
Msa0872310 AT1G26780.2 42.857 105 57 2 12 115 96 198 1.16e-19 89.4
Msa0872310 AT1G26780.1 42.857 105 57 2 12 115 96 198 1.64e-19 87.8
Msa0872310 AT2G25230.1 39.831 118 68 2 9 124 21 137 1.27e-18 84.3
Msa0872310 AT3G29020.1 36.190 105 66 1 14 118 65 168 4.66e-17 79.7
Msa0872310 AT3G29020.2 36.190 105 66 1 14 118 67 170 6.18e-17 80.9
Msa0872310 AT5G17800.1 39.216 102 61 1 14 115 93 193 6.34e-17 80.9
Msa0872310 AT2G02820.3 39.394 99 59 1 17 115 33 130 4.91e-16 78.6
Msa0872310 AT2G02820.1 39.394 99 59 1 17 115 33 130 5.65e-16 79.3
Msa0872310 AT2G02820.2 39.394 99 59 1 17 115 33 130 7.35e-16 79.0
Msa0872310 AT4G28110.2 71.429 42 12 0 88 129 4 45 1.83e-15 74.7
Msa0872310 AT5G39700.1 36.538 104 65 1 15 118 57 159 2.19e-15 74.3
Msa0872310 AT4G00540.2 38.739 111 64 2 12 119 101 210 2.49e-15 77.0
Msa0872310 AT4G00540.1 38.739 111 64 2 12 119 99 208 3.00e-15 77.0
Msa0872310 AT1G14350.2 39.394 99 59 1 17 115 28 125 5.54e-15 76.3
Msa0872310 AT1G14350.1 39.394 99 59 1 17 115 28 125 5.54e-15 76.3
Msa0872310 AT3G28910.2 46.739 92 46 2 78 169 2 90 9.37e-15 73.6
Msa0872310 AT1G74650.3 73.810 42 11 0 78 119 2 43 1.37e-14 73.2
Msa0872310 AT5G14340.2 53.571 56 26 0 88 143 10 65 7.57e-14 69.7
Msa0872310 AT5G40430.1 34.188 117 75 2 4 120 44 158 1.01e-13 70.9
Msa0872310 AT2G37630.1 31.159 138 87 3 17 147 7 143 1.74e-13 71.2
Msa0872310 AT1G22640.2 58.000 50 21 0 88 137 16 65 1.27e-12 66.2
Msa0872310 AT4G25560.2 60.417 48 19 0 71 118 3 50 2.84e-12 65.9
Msa0872310 AT5G59780.1 62.791 43 16 0 73 115 4 46 3.03e-12 64.7
Msa0872310 AT1G74430.2 61.364 44 17 0 85 128 16 59 4.75e-12 65.1
Msa0872310 AT3G46130.2 62.791 43 16 0 73 115 4 46 5.41e-12 64.7

Find 59 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTATGTGAACGAATTT+TGG 0.141100 6_1:-7740192 None:intergenic
ATTCAACTTCATGCTCTCTT+AGG 0.167406 6_1:+7738946 Msa0872310:CDS
GTGTTAAACTCACTACAAAA+TGG 0.229498 6_1:+7738428 Msa0872310:exon
ATTTCTCCACTATTCATAAT+TGG 0.239670 6_1:-7740299 None:intergenic
AACTTTCCTCTCTTAATATC+TGG 0.287644 6_1:-7738898 None:intergenic
ATTATGAATAGTGGAGAAAT+TGG 0.314925 6_1:+7740302 Msa0872310:CDS
TAAGATGGACTAATTATCTT+AGG 0.318250 6_1:+7738875 Msa0872310:CDS
ATAATGAGATAAAGAATTAC+TGG 0.355857 6_1:+7739988 Msa0872310:CDS
ATCATAATCACTTGAAAGCT+TGG 0.362434 6_1:+7740222 Msa0872310:CDS
TGTCTATGATTGAATTTGTT+GGG 0.385408 6_1:+7740393 Msa0872310:CDS
TTTCTCATTACCATTATTGT+TGG 0.395908 6_1:-7740339 None:intergenic
TGATCTTCTTCTGGAGTCCA+TGG 0.398939 6_1:-7738492 None:intergenic
GGAGAAAATACCAACAATAA+TGG 0.401933 6_1:+7740329 Msa0872310:CDS
TTCATGCTCTCTTAGGGAAC+AGG 0.403403 6_1:+7738953 Msa0872310:CDS
GACAAAGTTGGTTTAAAGAA+AGG 0.409452 6_1:+7738468 Msa0872310:CDS
TCTTAGTCACATGGCTCAAT+GGG 0.413275 6_1:+7740127 Msa0872310:CDS
AATGGTGGTGATGGTGGAAA+TGG 0.425976 6_1:+7740644 Msa0872310:CDS
TTCAACTTCATGCTCTCTTA+GGG 0.440645 6_1:+7738947 Msa0872310:CDS
GTGTCTATGATTGAATTTGT+TGG 0.441639 6_1:+7740392 Msa0872310:CDS
ATCTTAGTCACATGGCTCAA+TGG 0.445039 6_1:+7740126 Msa0872310:CDS
CGTGCTTTGCCAGCTAAAGC+TGG 0.450806 6_1:+7738558 Msa0872310:CDS
TGTTAAACTCACTACAAAAT+GGG 0.453114 6_1:+7738429 Msa0872310:exon
GTCAGCTATAGCAACACATT+TGG 0.463806 6_1:+7739953 Msa0872310:CDS
GTTGCACCAATTATGAATAG+TGG 0.464401 6_1:+7740293 Msa0872310:CDS
AGTTCAATTGTGAAAGAAGA+AGG 0.467308 6_1:+7740425 Msa0872310:CDS
ATGAAGATAACAATAACTAC+TGG 0.468008 6_1:+7740684 Msa0872310:CDS
TTAAAGAAGTACTTAACCTA+TGG 0.471084 6_1:-7738340 None:intergenic
GGTGATGGTGGAAATGGAAG+TGG 0.475445 6_1:+7740650 Msa0872310:CDS
GCATCATTACCAGCTTTAGC+TGG 0.492304 6_1:-7738567 None:intergenic
ATGATCAAGATCAAGATCAA+TGG 0.499871 6_1:+7740453 Msa0872310:CDS
TCATGAGTTGACTATGTCAA+TGG 0.502069 6_1:+7740517 Msa0872310:CDS
GGAACACACATCTTAAGAAA+AGG 0.504202 6_1:+7740009 Msa0872310:CDS
AAGAACATGGTCATGGAAGT+TGG 0.505038 6_1:+7738535 Msa0872310:CDS
CAAAACATTGGTGAATCAGA+TGG 0.512301 6_1:-7740737 None:intergenic
AATAGTGGAGAAATTGGAGG+AGG 0.518144 6_1:+7740308 Msa0872310:CDS
TTGAAAGATAAAGTTGAAGT+AGG 0.524078 6_1:-7740263 None:intergenic
GTAAGAGCTGCAGATTAAGA+TGG 0.536224 6_1:+7738860 Msa0872310:CDS
GACTTGAGTTTGTCAGAGAG+TGG 0.538409 6_1:+7740608 Msa0872310:CDS
GAGAGCATGAAGTTGAATGA+TGG 0.544901 6_1:-7738941 None:intergenic
TCACCATGTTGTGACAAAGT+TGG 0.546765 6_1:+7738456 Msa0872310:CDS
GATGATGTCATTGCTGAAGA+AGG 0.549060 6_1:+7740551 Msa0872310:CDS
ATTAATAATGATGAGAACAA+TGG 0.557396 6_1:+7740365 Msa0872310:CDS
TTGGTTTAAAGAAAGGTCCA+TGG 0.561619 6_1:+7738475 Msa0872310:CDS
TATATTGAAGAACATGGTCA+TGG 0.565958 6_1:+7738528 Msa0872310:CDS
AAACCAACTTTGTCACAACA+TGG 0.572673 6_1:-7738459 None:intergenic
ATGATGTCATTGCTGAAGAA+GGG 0.582083 6_1:+7740552 Msa0872310:CDS
GAATCTAACAATGGTGGTGA+TGG 0.584861 6_1:+7740635 Msa0872310:CDS
CAAGATCAAGATCAATGGAA+AGG 0.588024 6_1:+7740458 Msa0872310:CDS
ATGAATAGTGGAGAAATTGG+AGG 0.588583 6_1:+7740305 Msa0872310:CDS
TCTAACAATGGTGGTGATGG+TGG 0.594929 6_1:+7740638 Msa0872310:CDS
CTTAGGCCAGATATTAAGAG+AGG 0.595623 6_1:+7738892 Msa0872310:CDS
CACATCTTATATCAAAACAT+TGG 0.606562 6_1:-7740749 None:intergenic
AAATTAGGGCTTCAAAGATG+TGG 0.614060 6_1:+7738838 Msa0872310:intron
TTGAGTTTGTCAGAGAGTGG+AGG 0.626434 6_1:+7740611 Msa0872310:CDS
TCAATTGTGAAAGAAGAAGG+TGG 0.631897 6_1:+7740428 Msa0872310:CDS
TGCTTCAAATCTTAGTCACA+TGG 0.636039 6_1:+7740118 Msa0872310:CDS
TTAGCTTATATTGAAGAACA+TGG 0.677580 6_1:+7738522 Msa0872310:CDS
AGTGGAGGTGAATCTAACAA+TGG 0.688377 6_1:+7740626 Msa0872310:CDS
GGAGGTGAATCTAACAATGG+TGG 0.762552 6_1:+7740629 Msa0872310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTCTTTATAAAATT+AGG + chr6_1:7739928-7739947 Msa0872310:intron 10.0%
!! CATCTTAATTATTAATTTCT+AGG + chr6_1:7739002-7739021 Msa0872310:intron 15.0%
!! GAGTAATAAATTTAAGAAAA+TGG - chr6_1:7739426-7739445 None:intergenic 15.0%
!!! CAGTTTTTTTTTTTTTTTTG+AGG - chr6_1:7739545-7739564 None:intergenic 15.0%
!!! TTTTTCTTTATAAAATTAGG+TGG + chr6_1:7739931-7739950 Msa0872310:intron 15.0%
!!! TTTTTTTTCTATCTTACCAT+AGG + chr6_1:7738324-7738343 Msa0872310:five_prime_UTR 20.0%
!! ACAAAAAATTAGAAAAGCAA+AGG - chr6_1:7738592-7738611 None:intergenic 20.0%
!! GCTTTGATATATTTATATAC+CGG + chr6_1:7738628-7738647 Msa0872310:intron 20.0%
!! TAACATGTTTATAGTGTTTA+AGG + chr6_1:7738744-7738763 Msa0872310:intron 20.0%
!! TTGTTGTGATATTGTAAATT+AGG + chr6_1:7738823-7738842 Msa0872310:intron 20.0%
!! TGTTGTGATATTGTAAATTA+GGG + chr6_1:7738824-7738843 Msa0872310:intron 20.0%
!! ACAAAATGAAAAAATTGTAG+AGG - chr6_1:7739153-7739172 None:intergenic 20.0%
!!! TATAATCATTCATTTTCTGT+TGG + chr6_1:7739288-7739307 Msa0872310:intron 20.0%
!!! ATAATCATTCATTTTCTGTT+GGG + chr6_1:7739289-7739308 Msa0872310:intron 20.0%
!!! ATAACTTGAATTATTTGTTG+GGG - chr6_1:7739395-7739414 None:intergenic 20.0%
!! CATAACTTGAATTATTTGTT+GGG - chr6_1:7739396-7739415 None:intergenic 20.0%
!! TCCAAAATGATAAAATTATG+TGG + chr6_1:7739484-7739503 Msa0872310:intron 20.0%
!!! ACCACATAATTTTATCATTT+TGG - chr6_1:7739488-7739507 None:intergenic 20.0%
!! TATTGAACTATATTAACCAA+TGG + chr6_1:7739580-7739599 Msa0872310:intron 20.0%
!! ATTGAACTATATTAACCAAT+GGG + chr6_1:7739581-7739600 Msa0872310:intron 20.0%
!! ATAATGAGATAAAGAATTAC+TGG + chr6_1:7739988-7740007 Msa0872310:CDS 20.0%
!! TAAGAAAAGGTTAACAAAAA+TGG + chr6_1:7740022-7740041 Msa0872310:CDS 20.0%
!! AAGAAAAGGTTAACAAAAAT+GGG + chr6_1:7740023-7740042 Msa0872310:CDS 20.0%
!! ATTAATAATGATGAGAACAA+TGG + chr6_1:7740365-7740384 Msa0872310:CDS 20.0%
! GATAGAAAAAAAATGAGAGA+AGG - chr6_1:7738317-7738336 None:intergenic 25.0%
!!! TTAAAGAAGTACTTAACCTA+TGG - chr6_1:7738343-7738362 None:intergenic 25.0%
! TGTTAAACTCACTACAAAAT+GGG + chr6_1:7738429-7738448 Msa0872310:exon 25.0%
! TTAGCTTATATTGAAGAACA+TGG + chr6_1:7738522-7738541 Msa0872310:CDS 25.0%
!!! TAAGATGGACTAATTATCTT+AGG + chr6_1:7738875-7738894 Msa0872310:CDS 25.0%
! ATTAAGATGACAACACAATA+AGG - chr6_1:7738991-7739010 None:intergenic 25.0%
!!! GTGTTTTGAAGAAAATGATA+GGG - chr6_1:7739081-7739100 None:intergenic 25.0%
!!! TGTGTTTTGAAGAAAATGAT+AGG - chr6_1:7739082-7739101 None:intergenic 25.0%
! AAATGAAAAAATTGTAGAGG+TGG - chr6_1:7739150-7739169 None:intergenic 25.0%
! GATGCCTATATTTATATATG+TGG + chr6_1:7739220-7739239 Msa0872310:intron 25.0%
! GTTGCCACATATATAAATAT+AGG - chr6_1:7739227-7739246 None:intergenic 25.0%
!! TAATCATTCATTTTCTGTTG+GGG + chr6_1:7739290-7739309 Msa0872310:intron 25.0%
! GCATAACTTGAATTATTTGT+TGG - chr6_1:7739397-7739416 None:intergenic 25.0%
!! GTTGATGAGTTAATAATGTA+TGG + chr6_1:7739862-7739881 Msa0872310:intron 25.0%
!! TGAATTATGTGAACGAATTT+TGG - chr6_1:7740195-7740214 None:intergenic 25.0%
! TTGAAAGATAAAGTTGAAGT+AGG - chr6_1:7740266-7740285 None:intergenic 25.0%
! ATTTCTCCACTATTCATAAT+TGG - chr6_1:7740302-7740321 None:intergenic 25.0%
!! ATTATGAATAGTGGAGAAAT+TGG + chr6_1:7740302-7740321 Msa0872310:CDS 25.0%
! TTTCTCATTACCATTATTGT+TGG - chr6_1:7740342-7740361 None:intergenic 25.0%
!! TGTCTATGATTGAATTTGTT+GGG + chr6_1:7740393-7740412 Msa0872310:CDS 25.0%
! ATGAAGATAACAATAACTAC+TGG + chr6_1:7740684-7740703 Msa0872310:CDS 25.0%
! CACATCTTATATCAAAACAT+TGG - chr6_1:7740752-7740771 None:intergenic 25.0%
GTGTTAAACTCACTACAAAA+TGG + chr6_1:7738428-7738447 Msa0872310:exon 30.0%
! GACAAAGTTGGTTTAAAGAA+AGG + chr6_1:7738468-7738487 Msa0872310:CDS 30.0%
! AAGAGTTTTTGATCTTCTTC+TGG - chr6_1:7738504-7738523 None:intergenic 30.0%
TATATTGAAGAACATGGTCA+TGG + chr6_1:7738528-7738547 Msa0872310:CDS 30.0%
TTTATATACCGGTAGAACAT+TGG + chr6_1:7738639-7738658 Msa0872310:intron 30.0%
TCAGAAAGAAATTGGAAAGT+TGG + chr6_1:7738669-7738688 Msa0872310:intron 30.0%
AACTTTCCTCTCTTAATATC+TGG - chr6_1:7738901-7738920 None:intergenic 30.0%
CAATTGAAGCAAATGAGTTA+AGG - chr6_1:7739048-7739067 None:intergenic 30.0%
CTTAACTCATTTGCTTCAAT+TGG + chr6_1:7739046-7739065 Msa0872310:intron 30.0%
! TTGAATTATTTGTTGGGGAT+GGG - chr6_1:7739390-7739409 None:intergenic 30.0%
TAGTGACATTAATATCCCAT+TGG - chr6_1:7739599-7739618 None:intergenic 30.0%
!!! TTTTTAGGTTTGTGTGTAAC+TGG - chr6_1:7740056-7740075 None:intergenic 30.0%
!! GAAAGAAGTGCATCATTTTT+AGG - chr6_1:7740071-7740090 None:intergenic 30.0%
ATCATAATCACTTGAAAGCT+TGG + chr6_1:7740222-7740241 Msa0872310:CDS 30.0%
GGAGAAAATACCAACAATAA+TGG + chr6_1:7740329-7740348 Msa0872310:CDS 30.0%
GTGTCTATGATTGAATTTGT+TGG + chr6_1:7740392-7740411 Msa0872310:CDS 30.0%
AGTTCAATTGTGAAAGAAGA+AGG + chr6_1:7740425-7740444 Msa0872310:CDS 30.0%
ATGATCAAGATCAAGATCAA+TGG + chr6_1:7740453-7740472 Msa0872310:CDS 30.0%
AAACCAACTTTGTCACAACA+TGG - chr6_1:7738462-7738481 None:intergenic 35.0%
TTGGTTTAAAGAAAGGTCCA+TGG + chr6_1:7738475-7738494 Msa0872310:CDS 35.0%
GTGTGAAGTCAGAAAGAAAT+TGG + chr6_1:7738661-7738680 Msa0872310:intron 35.0%
AAATTAGGGCTTCAAAGATG+TGG + chr6_1:7738838-7738857 Msa0872310:intron 35.0%
ATTCAACTTCATGCTCTCTT+AGG + chr6_1:7738946-7738965 Msa0872310:CDS 35.0%
TTCAACTTCATGCTCTCTTA+GGG + chr6_1:7738947-7738966 Msa0872310:CDS 35.0%
!! AGTAAGTGCTGAGTAAGAAT+GGG - chr6_1:7739269-7739288 None:intergenic 35.0%
!! TAGTAAGTGCTGAGTAAGAA+TGG - chr6_1:7739270-7739289 None:intergenic 35.0%
TAAGACATACCTCACAACAA+GGG - chr6_1:7739343-7739362 None:intergenic 35.0%
TTAAGACATACCTCACAACA+AGG - chr6_1:7739344-7739363 None:intergenic 35.0%
! CTTGAATTATTTGTTGGGGA+TGG - chr6_1:7739391-7739410 None:intergenic 35.0%
TTGAACAAACTTGGATGTCA+GGG - chr6_1:7739448-7739467 None:intergenic 35.0%
TTTCACACCTTGAACAAACT+TGG - chr6_1:7739457-7739476 None:intergenic 35.0%
TAACATCTGCGAGAGAAATT+TGG - chr6_1:7739758-7739777 None:intergenic 35.0%
GGAACACACATCTTAAGAAA+AGG + chr6_1:7740009-7740028 Msa0872310:CDS 35.0%
TGCTTCAAATCTTAGTCACA+TGG + chr6_1:7740118-7740137 Msa0872310:CDS 35.0%
GTTGCACCAATTATGAATAG+TGG + chr6_1:7740293-7740312 Msa0872310:CDS 35.0%
! ATGAATAGTGGAGAAATTGG+AGG + chr6_1:7740305-7740324 Msa0872310:CDS 35.0%
TCAATTGTGAAAGAAGAAGG+TGG + chr6_1:7740428-7740447 Msa0872310:CDS 35.0%
CAAGATCAAGATCAATGGAA+AGG + chr6_1:7740458-7740477 Msa0872310:CDS 35.0%
! TCATGAGTTGACTATGTCAA+TGG + chr6_1:7740517-7740536 Msa0872310:CDS 35.0%
ATGATGTCATTGCTGAAGAA+GGG + chr6_1:7740552-7740571 Msa0872310:CDS 35.0%
CAAAACATTGGTGAATCAGA+TGG - chr6_1:7740740-7740759 None:intergenic 35.0%
TCACCATGTTGTGACAAAGT+TGG + chr6_1:7738456-7738475 Msa0872310:CDS 40.0%
AAGAACATGGTCATGGAAGT+TGG + chr6_1:7738535-7738554 Msa0872310:CDS 40.0%
ACTTCACACCAATGTTCTAC+CGG - chr6_1:7738650-7738669 None:intergenic 40.0%
GTAAGAGCTGCAGATTAAGA+TGG + chr6_1:7738860-7738879 Msa0872310:CDS 40.0%
CTTAGGCCAGATATTAAGAG+AGG + chr6_1:7738892-7738911 Msa0872310:CDS 40.0%
! GAGAGCATGAAGTTGAATGA+TGG - chr6_1:7738944-7738963 None:intergenic 40.0%
ATACCTCACAACAAGGGAAT+TGG - chr6_1:7739337-7739356 None:intergenic 40.0%
! ATTATTTGTTGGGGATGGGT+TGG - chr6_1:7739386-7739405 None:intergenic 40.0%
CTTGAACAAACTTGGATGTC+AGG - chr6_1:7739449-7739468 None:intergenic 40.0%
! CTGACATCCAAGTTTGTTCA+AGG + chr6_1:7739447-7739466 Msa0872310:intron 40.0%
GTCAGCTATAGCAACACATT+TGG + chr6_1:7739953-7739972 Msa0872310:CDS 40.0%
ATCTTAGTCACATGGCTCAA+TGG + chr6_1:7740126-7740145 Msa0872310:CDS 40.0%
TCTTAGTCACATGGCTCAAT+GGG + chr6_1:7740127-7740146 Msa0872310:CDS 40.0%
! AATAGTGGAGAAATTGGAGG+AGG + chr6_1:7740308-7740327 Msa0872310:CDS 40.0%
GATGATGTCATTGCTGAAGA+AGG + chr6_1:7740551-7740570 Msa0872310:CDS 40.0%
AGTGGAGGTGAATCTAACAA+TGG + chr6_1:7740626-7740645 Msa0872310:CDS 40.0%
! GAATCTAACAATGGTGGTGA+TGG + chr6_1:7740635-7740654 Msa0872310:CDS 40.0%
!! TGATCTTCTTCTGGAGTCCA+TGG - chr6_1:7738495-7738514 None:intergenic 45.0%
! GCATCATTACCAGCTTTAGC+TGG - chr6_1:7738570-7738589 None:intergenic 45.0%
TTCATGCTCTCTTAGGGAAC+AGG + chr6_1:7738953-7738972 Msa0872310:CDS 45.0%
! CTTCCAATTCCCTTGTTGTG+AGG + chr6_1:7739331-7739350 Msa0872310:intron 45.0%
GACTTGAGTTTGTCAGAGAG+TGG + chr6_1:7740608-7740627 Msa0872310:CDS 45.0%
TTGAGTTTGTCAGAGAGTGG+AGG + chr6_1:7740611-7740630 Msa0872310:CDS 45.0%
GGAGGTGAATCTAACAATGG+TGG + chr6_1:7740629-7740648 Msa0872310:CDS 45.0%
!! TCTAACAATGGTGGTGATGG+TGG + chr6_1:7740638-7740657 Msa0872310:CDS 45.0%
!! AATGGTGGTGATGGTGGAAA+TGG + chr6_1:7740644-7740663 Msa0872310:CDS 45.0%
GCTCTCTTAGGGAACAGGTT+TGG + chr6_1:7738958-7738977 Msa0872310:intron 50.0%
!! GGTGATGGTGGAAATGGAAG+TGG + chr6_1:7740650-7740669 Msa0872310:CDS 50.0%
CGTGCTTTGCCAGCTAAAGC+TGG + chr6_1:7738558-7738577 Msa0872310:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 7738293 7740783 7738293 ID=Msa0872310;Name=Msa0872310
chr6_1 mRNA 7738293 7740783 7738293 ID=Msa0872310-mRNA-1;Parent=Msa0872310;Name=Msa0872310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=154|1|1|1|0.5|1|3|23|357
chr6_1 exon 7738293 7738579 7738293 ID=Msa0872310-mRNA-1:exon:2333;Parent=Msa0872310-mRNA-1
chr6_1 exon 7738845 7738974 7738845 ID=Msa0872310-mRNA-1:exon:2334;Parent=Msa0872310-mRNA-1
chr6_1 exon 7739950 7740783 7739950 ID=Msa0872310-mRNA-1:exon:2335;Parent=Msa0872310-mRNA-1
chr6_1 five_prime_UTR 7738293 7738446 7738293 ID=Msa0872310-mRNA-1:five_prime_utr;Parent=Msa0872310-mRNA-1
chr6_1 CDS 7738447 7738579 7738447 ID=Msa0872310-mRNA-1:cds;Parent=Msa0872310-mRNA-1
chr6_1 CDS 7738845 7738974 7738845 ID=Msa0872310-mRNA-1:cds;Parent=Msa0872310-mRNA-1
chr6_1 CDS 7739950 7740760 7739950 ID=Msa0872310-mRNA-1:cds;Parent=Msa0872310-mRNA-1
chr6_1 three_prime_UTR 7740761 7740783 7740761 ID=Msa0872310-mRNA-1:three_prime_utr;Parent=Msa0872310-mRNA-1
Gene Sequence

>Msa0872310

ATGGGACGTTCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTGCTTTGCCAGCTAAAGCTGGGCTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCAGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATCATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGGCAAAGAGAACAGATAATGAGATAAAGAATTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGATCCAGTTACACACAAACCTAAAAATGATGCACTTCTTTCATCAAGTGATAATGCTCATTCAAAAACTGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTAGACTTGAAGCTGAAGCTAGACTTGTTAGAGAGTCCAAAATTCGTTCACATAATTCACTTCTTCATCATAATCACTTGAAAGCTTGGAATATTAATCTTGAGTCTCCTACTTCAACTTTATCTTTCAATGAGAATGTTGCACCAATTATGAATAGTGGAGAAATTGGAGGAGGAGAAAATACCAACAATAATGGTAATGAGAAAAATATTAATAATGATGAGAACAATGGTGTTGTGTCTATGATTGAATTTGTTGGGACTAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGATCAAGATCAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAAGTGTTGATGATGTCATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAGACAAATTCTGAAGACTTGAGTTTGTCAGAGAGTGGAGGTGAATCTAACAATGGTGGTGATGGTGGAAATGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTACTGGAATAATATTCTTAATTTAGTTAATTCTTCTCCATCTGATTCACCAATGTTTTGA
Protein sequence

>Msa0872310

MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLAKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDNAHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLHHNHLKAWNINLESPTSTLSFNENVAPIMNSGEIGGGENTNNNGNEKNINNDENNGVVSMIEFVGTNSSSIVKEEGGDDQDQDQWKGYESSLTFTSNLHHELTMSMDQSVDDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGDGGNGSGSEFYEDNNNYWNNILNLVNSSPSDSPMF*