AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223500 MtrunA17_Chr2g0328761 97.143 140 4 0 1 140 1 140 6.89e-93 277
Msa0223500 MtrunA17_Chr3g0088471 61.345 119 43 1 16 134 17 132 7.05e-42 145
Msa0223500 MtrunA17_Chr8g0352151 67.619 105 33 1 12 116 13 116 1.07e-41 145
Msa0223500 MtrunA17_Chr7g0243411 67.949 78 25 0 29 106 110 187 2.60e-23 92.8
Msa0223500 MtrunA17_Chr5g0448591 44.248 113 51 2 31 143 109 209 1.87e-19 83.6
Msa0223500 MtrunA17_Chr8g0352161 72.549 51 14 0 66 116 3 53 5.45e-18 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223500 AT1G51340.4 65.625 128 42 2 12 137 10 137 2.04e-38 134
Msa0223500 AT1G51340.3 65.625 128 42 2 12 137 10 137 1.52e-37 134
Msa0223500 AT1G51340.5 65.625 128 42 2 12 137 10 137 1.52e-37 134
Msa0223500 AT1G51340.2 65.625 128 42 2 12 137 10 137 1.52e-37 134
Msa0223500 AT1G51340.1 68.750 112 33 2 28 137 20 131 4.55e-33 121
Msa0223500 AT3G08040.1 63.889 108 39 0 16 123 15 122 3.66e-28 108
Msa0223500 AT2G38330.1 51.327 113 44 2 31 143 73 174 1.05e-20 87.4
Msa0223500 AT4G38380.2 45.652 92 38 1 33 112 104 195 9.50e-17 76.3
Msa0223500 AT4G38380.1 45.652 92 38 1 33 112 104 195 9.50e-17 76.3
Msa0223500 AT4G38380.3 45.652 92 38 1 33 112 32 123 1.41e-16 75.5
Msa0223500 AT4G38380.5 50.685 73 36 0 33 105 104 176 1.48e-16 75.5
Msa0223500 AT4G38380.4 46.429 84 33 1 41 112 2 85 3.90e-14 68.6

Find 161 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATCAGAAACGTCTTTA+AGG 0.166196 2_1:-73081160 None:intergenic
CTGGTGGATTCATTGGAATT+TGG 0.174098 2_1:+73085087 Msa0223500:three_prime_UTR
GCTTCGTCAGCGCTATATTT+TGG 0.205113 2_1:+73082896 Msa0223500:three_prime_UTR
ACATAATCATAGCTTATATT+TGG 0.219856 2_1:+73085347 Msa0223500:three_prime_UTR
ACTCATAATGACATGAAATA+TGG 0.232021 2_1:+73085561 Msa0223500:three_prime_UTR
ACGGCCTTCATTGGCCAATT+AGG 0.238684 2_1:+73082141 Msa0223500:CDS
TTCAAGTCTGTCTGCAAGTT+TGG 0.279500 2_1:+73084025 Msa0223500:three_prime_UTR
GCGGATGGTCTGGCTGTTGC+CGG 0.285261 2_1:+73084066 Msa0223500:three_prime_UTR
ATGCAGATGGGCGTGGTTCT+TGG 0.286776 2_1:+73084362 Msa0223500:intron
TATTTGATGGTGTCAACTTT+GGG 0.292922 2_1:+73084623 Msa0223500:three_prime_UTR
TGGTTTCAGGCGATTCTTGC+AGG 0.293939 2_1:+73084164 Msa0223500:intron
TTCGCACTTGCATTCATTCT+TGG 0.295952 2_1:+73084386 Msa0223500:three_prime_UTR
CTAAGACTATAGTGGAAATT+AGG 0.308006 2_1:+73081066 None:intergenic
AACATGATAACATACCTAAT+TGG 0.313690 2_1:-73082155 None:intergenic
AATTTCAAGTACTGCATTGC+AGG 0.318886 2_1:-73083162 None:intergenic
ACAAGGCTTGGCAGACTATC+AGG 0.325273 2_1:-73082744 None:intergenic
TGGTGGATTCATTGGAATTT+GGG 0.325300 2_1:+73085088 Msa0223500:three_prime_UTR
GGACTTGTTTGAGACGAAAA+AGG 0.328496 2_1:-73081114 None:intergenic
AGAAAGGAATAACATGAAAA+AGG 0.329832 2_1:-73081230 None:intergenic
AAAATTACATAAACAACAAC+TGG 0.330624 2_1:+73085685 Msa0223500:three_prime_UTR
TGTTTGGCCTTTGTATTTGA+TGG 0.334770 2_1:+73084610 Msa0223500:three_prime_UTR
AAAACCTTTATTGAACTTCA+TGG 0.337472 2_1:+73082964 Msa0223500:three_prime_UTR
ATACAAAGGCCAAACAGTTC+AGG 0.350521 2_1:-73084603 None:intergenic
AACTCTTTGGTTTCAGCATC+CGG 0.351723 2_1:-73082689 None:intergenic
ACCTATTTGCACTTTCTTCA+AGG 0.352355 2_1:+73081778 Msa0223500:CDS
TGAAAGCTTTAATGTAGTTA+AGG 0.364155 2_1:+73082841 Msa0223500:three_prime_UTR
AACTGCTACCCGAGTATTGC+AGG 0.367216 2_1:+73084223 Msa0223500:three_prime_UTR
GCCAAGCCTTGTTTCTCAAC+AGG 0.367630 2_1:+73082755 Msa0223500:three_prime_UTR
CATGAAATATGGGATCAAAA+AGG 0.368550 2_1:+73085572 Msa0223500:three_prime_UTR
TCATCTGCTGGTGGATTCAT+TGG 0.373915 2_1:+73085080 Msa0223500:three_prime_UTR
TTTCACCTAAAACAGTGAAT+TGG 0.378901 2_1:+73081698 Msa0223500:intron
GCCCGCTGCAATGGCTTTGA+CGG 0.379476 2_1:+73082092 Msa0223500:CDS
CTTGCATTCATTCTTGGAAC+AGG 0.384448 2_1:+73084392 Msa0223500:three_prime_UTR
TTATGATGCAGGATTGGAAC+TGG 0.389829 2_1:+73085269 Msa0223500:intron
TTTAATGTAGTTAAGGTTGA+TGG 0.390926 2_1:+73082848 Msa0223500:three_prime_UTR
ACTCCCATGAAGTTCAATAA+AGG 0.391036 2_1:-73082968 None:intergenic
GTATTTAAATTAGACGATCT+TGG 0.391627 2_1:+73082045 Msa0223500:CDS
TACATACCAGTGGCATATAA+AGG 0.392262 2_1:-73083264 None:intergenic
CAGAAATAAGCAACGTTGCC+TGG 0.395145 2_1:-73082937 None:intergenic
GTCCCTTCTTGCGGATGGTC+TGG 0.395512 2_1:+73084056 Msa0223500:three_prime_UTR
CATGATTGTGATATCTTGTT+GGG 0.399891 2_1:+73085469 Msa0223500:three_prime_UTR
TCTTCTTTCATTAGCGATGC+AGG 0.402072 2_1:+73083209 Msa0223500:three_prime_UTR
TGGTCTGGCTGTTGCCGGGC+AGG 0.402764 2_1:+73084071 Msa0223500:three_prime_UTR
AGGACTCAACTGAAATTAAC+AGG 0.404733 2_1:-73081285 None:intergenic
CTGTGAGCTTGCGTCGCTTA+AGG 0.406638 2_1:-73082630 None:intergenic
TCCTACACCTCATTAGAGTT+GGG 0.408785 2_1:+73084456 Msa0223500:three_prime_UTR
TCTTCATTCTCAGGTTATAG+TGG 0.409610 2_1:+73085025 Msa0223500:intron
GTATTTGATGGTGTCAACTT+TGG 0.411044 2_1:+73084622 Msa0223500:three_prime_UTR
AGAAATCATTTGAAAAGAAT+AGG 0.418081 2_1:+73085434 Msa0223500:three_prime_UTR
CACTCAACCCCTGAACTGTT+TGG 0.424826 2_1:+73084594 Msa0223500:three_prime_UTR
CTCATAATGACATGAAATAT+GGG 0.425245 2_1:+73085562 Msa0223500:three_prime_UTR
ATGAGTTTAAGAGCCTTTGC+TGG 0.427946 2_1:+73085128 Msa0223500:three_prime_UTR
TTGGTCGATACGGCCTTCAT+TGG 0.428017 2_1:+73082132 Msa0223500:CDS
TTGTGGTTCACATTAGTAAA+GGG 0.428110 2_1:+73085381 Msa0223500:three_prime_UTR
TTTCTGCGGTAAGAACTCTT+TGG 0.430202 2_1:-73082702 None:intergenic
AATTGCTTTGCCCGCTGCAA+TGG 0.438261 2_1:+73082083 Msa0223500:CDS
GTGATATCTTGTTGGGGCAT+CGG 0.441194 2_1:+73085476 Msa0223500:three_prime_UTR
CGACGCAAGCTCACAGGTAG+AGG 0.442007 2_1:+73082637 Msa0223500:CDS
GCCGTCAAAGCCATTGCAGC+GGG 0.444777 2_1:-73082093 None:intergenic
GCCCCACATTAACATATTTG+TGG 0.450475 2_1:+73081088 Msa0223500:five_prime_UTR
CTTGGAACAGGATTGCACTT+TGG 0.450496 2_1:+73084404 Msa0223500:three_prime_UTR
TACTTGAAATTGAGATCTCT+TGG 0.450593 2_1:+73083174 Msa0223500:three_prime_UTR
TGCAGGATTGGAACTGGGTC+AGG 0.452693 2_1:+73085275 Msa0223500:intron
GGCTGATCCTATAGCATCAT+TGG 0.454668 2_1:+73082113 Msa0223500:CDS
GCATGATTGTGATATCTTGT+TGG 0.456697 2_1:+73085468 Msa0223500:three_prime_UTR
CAGGACCATGGGAATTCCTT+AGG 0.460543 2_1:+73085294 Msa0223500:three_prime_UTR
AGGAGCTAAGTGCGCTAGCC+TGG 0.461068 2_1:+73085314 Msa0223500:three_prime_UTR
CTTGGAAGCTGCGACACCTC+CGG 0.465998 2_1:+73082670 Msa0223500:CDS
TCCTTGAAGAAAGTGCAAAT+AGG 0.466690 2_1:-73081779 None:intergenic
AATTGCAGATGTTTGATGCT+TGG 0.468820 2_1:-73083662 None:intergenic
ATTGTGGTTCACATTAGTAA+AGG 0.475969 2_1:+73085380 Msa0223500:three_prime_UTR
TGCAGGTGCATTTGCTAACA+AGG 0.477862 2_1:+73084181 Msa0223500:three_prime_UTR
ACATTCGTATGTTAGTAATC+AGG 0.477892 2_1:-73082794 None:intergenic
TACAAAGGCCAAACAGTTCA+GGG 0.478905 2_1:-73084602 None:intergenic
CGGATGGTCTGGCTGTTGCC+GGG 0.479805 2_1:+73084067 Msa0223500:three_prime_UTR
AAACCTTTATTGAACTTCAT+GGG 0.481789 2_1:+73082965 Msa0223500:three_prime_UTR
GCACTTTCTTCAAGGATGCT+AGG 0.484597 2_1:+73081786 Msa0223500:CDS
TGGAACTGGGTCAGGACCAT+GGG 0.486703 2_1:+73085283 Msa0223500:three_prime_UTR
CCTACTGCAGCAAGCTCCAC+TGG 0.487433 2_1:-73082518 None:intergenic
GTATCGACCAATGATGCTAT+AGG 0.489373 2_1:-73082120 None:intergenic
ATTTGGCCACAGTTTGATTG+TGG 0.495286 2_1:+73085364 Msa0223500:three_prime_UTR
GTCCTACACCTCATTAGAGT+TGG 0.498396 2_1:+73084455 Msa0223500:three_prime_UTR
TGCTAACAAGGACTATGAAA+AGG 0.500938 2_1:+73084193 Msa0223500:three_prime_UTR
GCAGTGTCCCTTCTTGCGGA+TGG 0.503081 2_1:+73084051 Msa0223500:three_prime_UTR
CTTGTTTGTTCAAACTCCAC+AGG 0.509281 2_1:-73083625 None:intergenic
GCTAGCGCACTTAGCTCCTA+AGG 0.510397 2_1:-73085310 None:intergenic
TCCTGTTGAGAAACAAGGCT+TGG 0.512749 2_1:-73082756 None:intergenic
CATACCTAATTGGCCAATGA+AGG 0.513148 2_1:-73082145 None:intergenic
AGTCTGTCTGCAAGTTTGGT+TGG 0.514353 2_1:+73084029 Msa0223500:three_prime_UTR
GTAGCAGTCTAAGACTATAG+TGG 0.519360 2_1:+73081058 None:intergenic
CCTCATTAGAGTTGGGGTCC+CGG 0.519902 2_1:+73084463 Msa0223500:three_prime_UTR
TGTGTTGACAAACTCAGATT+CGG 0.522029 2_1:+73082814 Msa0223500:three_prime_UTR
CCAGTGGAGCTTGCTGCAGT+AGG 0.523504 2_1:+73082518 Msa0223500:CDS
GATTATGTATTGATGTTGCC+AGG 0.524125 2_1:-73085332 None:intergenic
AGCTCACAGGTAGAGGAGAA+TGG 0.528973 2_1:+73082644 Msa0223500:CDS
GTCCACAAATATGTTAATGT+GGG 0.533008 2_1:-73081090 None:intergenic
TGTAGAACACCTGCAATACT+CGG 0.533112 2_1:-73084232 None:intergenic
CTTAAGCGACGCAAGCTCAC+AGG 0.533775 2_1:+73082631 Msa0223500:CDS
CTTCTTTCATTAGCGATGCA+GGG 0.537717 2_1:+73083210 Msa0223500:three_prime_UTR
TGCAGATGTTTGATGCTTGG+AGG 0.538167 2_1:-73083659 None:intergenic
TTGGAACTGGGTCAGGACCA+TGG 0.539529 2_1:+73085282 Msa0223500:three_prime_UTR
CAGCCAGACCATCCGCAAGA+AGG 0.542007 2_1:-73084059 None:intergenic
TGTCCACAAATATGTTAATG+TGG 0.542132 2_1:-73081091 None:intergenic
TAATATAATGCAGATGGGCG+TGG 0.542994 2_1:+73084355 Msa0223500:intron
TCTGCAATCTGAAAGAAGAA+AGG 0.543648 2_1:-73081246 None:intergenic
GGTAGAGGAGAATGGATGCT+TGG 0.544369 2_1:+73082652 Msa0223500:CDS
TATAGCATCATTGGTCGATA+CGG 0.544448 2_1:+73082122 Msa0223500:CDS
GAGCCTTTGCTGGCTTCTTG+AGG 0.546982 2_1:+73085138 Msa0223500:three_prime_UTR
AAAACTCCTTTATATGCCAC+TGG 0.548051 2_1:+73083258 Msa0223500:three_prime_UTR
ACGTTGCCTGGACGAGGCCA+AGG 0.550365 2_1:-73082925 None:intergenic
AGGTATCCTTGGCCTCGTCC+AGG 0.551223 2_1:+73082919 Msa0223500:three_prime_UTR
GTATTCCGCATGGGTGTCAA+CGG 0.551236 2_1:+73083404 Msa0223500:three_prime_UTR
CTCTATTCAATCAAGCATCA+AGG 0.567403 2_1:+73082552 Msa0223500:CDS
TGCTTGATTGAATAGAGCTA+TGG 0.567545 2_1:-73082546 None:intergenic
GGTAACATTCTGCGTGACAC+TGG 0.567656 2_1:+73083957 Msa0223500:three_prime_UTR
GTTGGCAGTGTCCCTTCTTG+CGG 0.568099 2_1:+73084047 Msa0223500:three_prime_UTR
GAGATCTCTTGGTGCTCCTG+CGG 0.568151 2_1:+73083185 Msa0223500:three_prime_UTR
TGCATATTCAGCCTTCTCCA+TGG 0.574962 2_1:+73084657 Msa0223500:three_prime_UTR
GCAACAAAACAAAACAACAT+TGG 0.576245 2_1:-73081135 None:intergenic
AGCCAGACCATCCGCAAGAA+GGG 0.579779 2_1:-73084058 None:intergenic
TATTAGATAGATACACTTGG+AGG 0.580107 2_1:-73085539 None:intergenic
GTGAATTGGCACTTCAGAGA+TGG 0.580452 2_1:+73081712 Msa0223500:intron
CTATCAGGAAAGTAGAAGAA+TGG 0.583670 2_1:-73082729 None:intergenic
TAAGCAACGTTGCCTGGACG+AGG 0.584099 2_1:-73082931 None:intergenic
CATTTGAAAAGAATAGGCAT+TGG 0.586165 2_1:+73085440 Msa0223500:three_prime_UTR
TGAATCATATCTCACCTGCC+CGG 0.590246 2_1:-73084085 None:intergenic
GAAGTTACATACCATGGAGA+AGG 0.599442 2_1:-73084668 None:intergenic
ACAGACTTGAAATGCAGCCA+TGG 0.602463 2_1:-73084013 None:intergenic
ATTTGATGGTGTCAACTTTG+GGG 0.602557 2_1:+73084624 Msa0223500:three_prime_UTR
CCGGGACCCCAACTCTAATG+AGG 0.604305 2_1:-73084463 None:intergenic
TACTTTCAGCTATACTCCTG+TGG 0.608095 2_1:+73083609 Msa0223500:three_prime_UTR
TACTCGGGTAGCAGTTGTTG+AGG 0.609106 2_1:-73084216 None:intergenic
TGCATTGCAGGATGTAGCAT+AGG 0.609472 2_1:-73083150 None:intergenic
GAAGTTGTGACACTGACTAG+TGG 0.610876 2_1:-73082587 None:intergenic
GCTAATGAAAGAAGAACCGC+AGG 0.618157 2_1:-73083201 None:intergenic
ATTGGTCTCTACAGGTCCAG+TGG 0.619428 2_1:+73082502 Msa0223500:intron
GTAGAACACCTGCAATACTC+GGG 0.620615 2_1:-73084231 None:intergenic
CTATACATCTTCTAAAGCTG+AGG 0.626582 2_1:-73085510 None:intergenic
AAGTTGTGACACTGACTAGT+GGG 0.626798 2_1:-73082586 None:intergenic
CCCCAACTCTAATGAGGTGT+AGG 0.629440 2_1:-73084457 None:intergenic
AGCCGTCAAAGCCATTGCAG+CGG 0.630911 2_1:-73082094 None:intergenic
ATTATTCATGAGAGTCATTG+CGG 0.631200 2_1:+73083936 Msa0223500:three_prime_UTR
TATGATGCAGGATTGGAACT+GGG 0.631342 2_1:+73085270 Msa0223500:intron
AGGTTGATGGAAGTAAGAGA+AGG 0.632842 2_1:+73082861 Msa0223500:three_prime_UTR
ACACCACGGATCAACATCCA+TGG 0.637699 2_1:+73083996 Msa0223500:three_prime_UTR
TTACCTCAAGAAGCCAGCAA+AGG 0.639714 2_1:-73085141 None:intergenic
CTGAGATATAACATGTGCAA+TGG 0.641731 2_1:-73083432 None:intergenic
CCTACACCTCATTAGAGTTG+GGG 0.644035 2_1:+73084457 Msa0223500:three_prime_UTR
GTTGACACCATCAAATACAA+AGG 0.646571 2_1:-73084617 None:intergenic
TCCACAAATATGTTAATGTG+GGG 0.651252 2_1:-73081089 None:intergenic
GAGTATTAGATAGATACACT+TGG 0.652013 2_1:-73085542 None:intergenic
TATAGCGCTGACGAAGCTGA+AGG 0.652574 2_1:-73082890 None:intergenic
AAATTACATAAACAACAACT+GGG 0.667467 2_1:+73085686 Msa0223500:three_prime_UTR
TCTTTGGTTTCAGCATCCGG+AGG 0.669170 2_1:-73082686 None:intergenic
TAGCTCCTAAGGAATTCCCA+TGG 0.675106 2_1:-73085299 None:intergenic
ATGATTGTGATATCTTGTTG+GGG 0.678987 2_1:+73085470 Msa0223500:three_prime_UTR
ACAAAGGCCAAACAGTTCAG+GGG 0.700393 2_1:-73084601 None:intergenic
TGTGAACCACAATCAAACTG+TGG 0.714063 2_1:-73085370 None:intergenic
GCATCATTAGCTGCACACCA+CGG 0.714665 2_1:+73083982 Msa0223500:three_prime_UTR
CAGCCATGGATGTTGATCCG+TGG 0.715332 2_1:-73083999 None:intergenic
CTGCACCGTTGACACCCATG+CGG 0.715966 2_1:-73083409 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATATCATAATTTAG+AGG - chr2_1:73081581-73081600 None:intergenic 10.0%
!!! ACATATTCAATTTTTTTTGT+TGG + chr2_1:73081513-73081532 Msa0223500:intron 15.0%
!! AAAAATTAGAAGAAACAAAA+AGG - chr2_1:73081628-73081647 None:intergenic 15.0%
!!! TAGTTAGCAATTATATTTTT+AGG + chr2_1:73081891-73081910 Msa0223500:intron 15.0%
!! AAAAATGAACTAAAAATATG+AGG - chr2_1:73081939-73081958 None:intergenic 15.0%
!! AAAATATGAATAGAACTATA+GGG + chr2_1:73082366-73082385 Msa0223500:intron 15.0%
!!! ACTTAATTACATTGATTATT+TGG - chr2_1:73082434-73082453 None:intergenic 15.0%
!! TATAGTTTAATACAGATTTA+AGG + chr2_1:73083489-73083508 Msa0223500:intron 15.0%
!! GTATAAACTTTAAATAACAT+TGG - chr2_1:73083804-73083823 None:intergenic 15.0%
!! TTAAAGTTTATACACAAATT+TGG + chr2_1:73083811-73083830 Msa0223500:intron 15.0%
!! TAATTATAATATAATGCAGA+TGG + chr2_1:73084349-73084368 Msa0223500:intron 15.0%
!! AATTATAATATAATGCAGAT+GGG + chr2_1:73084350-73084369 Msa0223500:intron 15.0%
!!! AAATTTCTCCTTATTTTTTT+AGG + chr2_1:73085406-73085425 Msa0223500:three_prime_UTR 15.0%
!!! TTTATGTAATTTTGTCTTTT+GGG - chr2_1:73085678-73085697 None:intergenic 15.0%
!! AAAAAATTGAATATGTATCG+AGG - chr2_1:73081509-73081528 None:intergenic 20.0%
!! AATATCACATTGATAAACAT+TGG + chr2_1:73081598-73081617 Msa0223500:intron 20.0%
!! AATAATTGAAAAAATTGTGG+AGG - chr2_1:73081834-73081853 None:intergenic 20.0%
!! CACAATAATTGAAAAAATTG+TGG - chr2_1:73081837-73081856 None:intergenic 20.0%
!! AAAATATAATTGCTAACTAG+AGG - chr2_1:73081890-73081909 None:intergenic 20.0%
!! GAAAATATGAATAGAACTAT+AGG + chr2_1:73082365-73082384 Msa0223500:intron 20.0%
!! ACGATGATTGAAAAATAATA+TGG + chr2_1:73083108-73083127 Msa0223500:intron 20.0%
!!! ATAATATGGATTATTTGTAC+AGG + chr2_1:73083122-73083141 Msa0223500:intron 20.0%
!! AATTTATTCGTGTTCAAATT+TGG + chr2_1:73084487-73084506 Msa0223500:intron 20.0%
!! ACATAATCATAGCTTATATT+TGG + chr2_1:73085347-73085366 Msa0223500:three_prime_UTR 20.0%
!! AGAAATCATTTGAAAAGAAT+AGG + chr2_1:73085434-73085453 Msa0223500:three_prime_UTR 20.0%
!!! TGAAAACAATTTTACATGTA+CGG + chr2_1:73085615-73085634 Msa0223500:three_prime_UTR 20.0%
!!! GTTTATGTAATTTTGTCTTT+TGG - chr2_1:73085679-73085698 None:intergenic 20.0%
!! AAAATTACATAAACAACAAC+TGG + chr2_1:73085685-73085704 Msa0223500:three_prime_UTR 20.0%
!! AAATTACATAAACAACAACT+GGG + chr2_1:73085686-73085705 Msa0223500:three_prime_UTR 20.0%
! TATAATCAGAAACGTCTTTA+AGG - chr2_1:73081163-73081182 None:intergenic 25.0%
! AGAAAGGAATAACATGAAAA+AGG - chr2_1:73081233-73081252 None:intergenic 25.0%
! TGAAAAATAACACTATCTCA+AGG - chr2_1:73081348-73081367 None:intergenic 25.0%
!! ACCTTTTCTTTTCATTATGA+TGG + chr2_1:73081378-73081397 Msa0223500:intron 25.0%
! ACCATCATAATGAAAAGAAA+AGG - chr2_1:73081382-73081401 None:intergenic 25.0%
! AATTAGAAGAAACAAAAAGG+TGG - chr2_1:73081625-73081644 None:intergenic 25.0%
!!! AAAGAGAGTTTGTTTTCTAT+AGG + chr2_1:73081740-73081759 Msa0223500:CDS 25.0%
! TTTCATAATTCCATGTACTT+AGG + chr2_1:73081989-73082008 Msa0223500:intron 25.0%
! GTATTTAAATTAGACGATCT+TGG + chr2_1:73082045-73082064 Msa0223500:CDS 25.0%
! AACATGATAACATACCTAAT+TGG - chr2_1:73082158-73082177 None:intergenic 25.0%
!! TAGTAATCAGGAAATTTTCT+TGG - chr2_1:73082785-73082804 None:intergenic 25.0%
!! TGAAAGCTTTAATGTAGTTA+AGG + chr2_1:73082841-73082860 Msa0223500:three_prime_UTR 25.0%
! TTTAATGTAGTTAAGGTTGA+TGG + chr2_1:73082848-73082867 Msa0223500:three_prime_UTR 25.0%
! AAAACCTTTATTGAACTTCA+TGG + chr2_1:73082964-73082983 Msa0223500:three_prime_UTR 25.0%
! AAACCTTTATTGAACTTCAT+GGG + chr2_1:73082965-73082984 Msa0223500:three_prime_UTR 25.0%
!! ATATCTCAGTATGTTTTACT+TGG + chr2_1:73083446-73083465 Msa0223500:intron 25.0%
! CAAAATCAAATAGAAGCAAA+AGG - chr2_1:73083550-73083569 None:intergenic 25.0%
! TTCAAATTAACTGTAAATGC+AGG + chr2_1:73083582-73083601 Msa0223500:intron 25.0%
!! TTATAAACCCTTACCATTTT+TGG - chr2_1:73083699-73083718 None:intergenic 25.0%
! AATCCTTATTATCTACGAAA+TGG + chr2_1:73083717-73083736 Msa0223500:intron 25.0%
! AAACCATTTCGTAGATAATA+AGG - chr2_1:73083723-73083742 None:intergenic 25.0%
!!! AAACCAAGATGATGTTTTTT+CGG - chr2_1:73084150-73084169 None:intergenic 25.0%
! GTTTATAGTCCTTGTTAAAA+AGG - chr2_1:73084277-73084296 None:intergenic 25.0%
! TTTGAACACGAATAAATTAC+CGG - chr2_1:73084485-73084504 None:intergenic 25.0%
! AATGAAAGTTCTACTCTTTA+GGG - chr2_1:73084543-73084562 None:intergenic 25.0%
! ATTAAAATATAGACTCTCCA+TGG - chr2_1:73084737-73084756 None:intergenic 25.0%
! TTTCAATGATTCTTCAAGAT+TGG - chr2_1:73084765-73084784 None:intergenic 25.0%
!!! AGAATATGAAAGAAAGCATT+AGG - chr2_1:73085189-73085208 None:intergenic 25.0%
! TCTCAAGACCTAAAAAAATA+AGG - chr2_1:73085417-73085436 None:intergenic 25.0%
! ACTCATAATGACATGAAATA+TGG + chr2_1:73085561-73085580 Msa0223500:three_prime_UTR 25.0%
! CTCATAATGACATGAAATAT+GGG + chr2_1:73085562-73085581 Msa0223500:three_prime_UTR 25.0%
!! ACGGATTTCTTTTCTTTTTT+TGG + chr2_1:73085634-73085653 Msa0223500:three_prime_UTR 25.0%
!! CGGATTTCTTTTCTTTTTTT+GGG + chr2_1:73085635-73085654 Msa0223500:three_prime_UTR 25.0%
TCCACAAATATGTTAATGTG+GGG - chr2_1:73081092-73081111 None:intergenic 30.0%
GTCCACAAATATGTTAATGT+GGG - chr2_1:73081093-73081112 None:intergenic 30.0%
TGTCCACAAATATGTTAATG+TGG - chr2_1:73081094-73081113 None:intergenic 30.0%
GCAACAAAACAAAACAACAT+TGG - chr2_1:73081138-73081157 None:intergenic 30.0%
AACTCTAGCTATGAAATCAA+TGG - chr2_1:73081312-73081331 None:intergenic 30.0%
TTGATTTCATAGCTAGAGTT+TGG + chr2_1:73081312-73081331 Msa0223500:intron 30.0%
!!! TTGTTTTTTCTTTGAGTGAG+AGG + chr2_1:73081413-73081432 Msa0223500:intron 30.0%
!!! TGTTTTTTCTTTGAGTGAGA+GGG + chr2_1:73081414-73081433 Msa0223500:intron 30.0%
GTCAGTATTTAACCACATAA+TGG + chr2_1:73081535-73081554 Msa0223500:intron 30.0%
CACATATATTCTCCATTATG+TGG - chr2_1:73081550-73081569 None:intergenic 30.0%
TTTCACCTAAAACAGTGAAT+TGG + chr2_1:73081698-73081717 Msa0223500:intron 30.0%
!! GTTTGTTTTCTATAGGTGAT+TGG + chr2_1:73081747-73081766 Msa0223500:CDS 30.0%
GAAAAAATTGTGGAGGAAAT+AGG - chr2_1:73081827-73081846 None:intergenic 30.0%
AAGAGTTAAACCTAAGTACA+TGG - chr2_1:73082002-73082021 None:intergenic 30.0%
TCTTGCTCTACTAATTTGAA+CGG - chr2_1:73082260-73082279 None:intergenic 30.0%
!! CATCAAGTGTTGGATATTAT+TGG + chr2_1:73082484-73082503 Msa0223500:intron 30.0%
ACATTCGTATGTTAGTAATC+AGG - chr2_1:73082797-73082816 None:intergenic 30.0%
ACATTACGAGACTTACTTAT+AGG + chr2_1:73083016-73083035 Msa0223500:intron 30.0%
TACTTGAAATTGAGATCTCT+TGG + chr2_1:73083174-73083193 Msa0223500:three_prime_UTR 30.0%
CGGAATACAAAAATGAAAAG+CGG - chr2_1:73083392-73083411 None:intergenic 30.0%
!! TTTCATTTTTGTATTCCGCA+TGG + chr2_1:73083394-73083413 Msa0223500:three_prime_UTR 30.0%
!! TTCATTTTTGTATTCCGCAT+GGG + chr2_1:73083395-73083414 Msa0223500:three_prime_UTR 30.0%
AGGAAATTAAGAGACAAGAT+AGG - chr2_1:73083530-73083549 None:intergenic 30.0%
! TTCAGCAGAGATATATTTTC+TGG + chr2_1:73083756-73083775 Msa0223500:intron 30.0%
! TCAGCAGAGATATATTTTCT+GGG + chr2_1:73083757-73083776 Msa0223500:intron 30.0%
!! ATTACCGATTTGAACGTAAA+AGG - chr2_1:73083870-73083889 None:intergenic 30.0%
ATGACAATAATGAAATGGGA+AGG - chr2_1:73083905-73083924 None:intergenic 30.0%
CTGCATGACAATAATGAAAT+GGG - chr2_1:73083909-73083928 None:intergenic 30.0%
ATTATTCATGAGAGTCATTG+CGG + chr2_1:73083936-73083955 Msa0223500:three_prime_UTR 30.0%
GATATGATTCATTACTCTCT+CGG + chr2_1:73084097-73084116 Msa0223500:intron 30.0%
AAAAACATCATCTTGGTTTC+AGG + chr2_1:73084151-73084170 Msa0223500:intron 30.0%
TTGAACACGAATAAATTACC+GGG - chr2_1:73084484-73084503 None:intergenic 30.0%
ATTCGTGTTCAAATTTGGAA+AGG + chr2_1:73084492-73084511 Msa0223500:intron 30.0%
GAATGAAAGTTCTACTCTTT+AGG - chr2_1:73084544-73084563 None:intergenic 30.0%
!! TATTTGATGGTGTCAACTTT+GGG + chr2_1:73084623-73084642 Msa0223500:three_prime_UTR 30.0%
GATCAAAGCAGATTAAAACA+TGG - chr2_1:73084696-73084715 None:intergenic 30.0%
TCAATGAACTATTATGATGC+AGG + chr2_1:73085258-73085277 Msa0223500:intron 30.0%
ATTGTGGTTCACATTAGTAA+AGG + chr2_1:73085380-73085399 Msa0223500:three_prime_UTR 30.0%
TTGTGGTTCACATTAGTAAA+GGG + chr2_1:73085381-73085400 Msa0223500:three_prime_UTR 30.0%
CATTTGAAAAGAATAGGCAT+TGG + chr2_1:73085440-73085459 Msa0223500:three_prime_UTR 30.0%
CATGATTGTGATATCTTGTT+GGG + chr2_1:73085469-73085488 Msa0223500:three_prime_UTR 30.0%
ATGATTGTGATATCTTGTTG+GGG + chr2_1:73085470-73085489 Msa0223500:three_prime_UTR 30.0%
TATTAGATAGATACACTTGG+AGG - chr2_1:73085542-73085561 None:intergenic 30.0%
GAGTATTAGATAGATACACT+TGG - chr2_1:73085545-73085564 None:intergenic 30.0%
CATGAAATATGGGATCAAAA+AGG + chr2_1:73085572-73085591 Msa0223500:three_prime_UTR 30.0%
TCTGCAATCTGAAAGAAGAA+AGG - chr2_1:73081249-73081268 None:intergenic 35.0%
AGGACTCAACTGAAATTAAC+AGG - chr2_1:73081288-73081307 None:intergenic 35.0%
CTAGCTATGAAATCAATGGA+AGG - chr2_1:73081308-73081327 None:intergenic 35.0%
CATCAACTTAACAACAGTGA+TGG - chr2_1:73081480-73081499 None:intergenic 35.0%
! AAGTGCCAATTCACTGTTTT+AGG - chr2_1:73081706-73081725 None:intergenic 35.0%
ACCTATTTGCACTTTCTTCA+AGG + chr2_1:73081778-73081797 Msa0223500:CDS 35.0%
! TCCTTGAAGAAAGTGCAAAT+AGG - chr2_1:73081782-73081801 None:intergenic 35.0%
! AATACTAGTCTGCAGTAAGA+AGG - chr2_1:73082030-73082049 None:intergenic 35.0%
TATAGCATCATTGGTCGATA+CGG + chr2_1:73082122-73082141 Msa0223500:CDS 35.0%
!!! GCTATGTCTATCGACTTTTT+TGG - chr2_1:73082238-73082257 None:intergenic 35.0%
TGTTGATCCAACTCGAAAAA+TGG + chr2_1:73082397-73082416 Msa0223500:intron 35.0%
!!! CTTCTATCCATTTTTCGAGT+TGG - chr2_1:73082407-73082426 None:intergenic 35.0%
TGTTATAACGCATCAAGTGT+TGG + chr2_1:73082474-73082493 Msa0223500:intron 35.0%
! TGGATATTATTGGTCTCTAC+AGG + chr2_1:73082494-73082513 Msa0223500:intron 35.0%
TGCTTGATTGAATAGAGCTA+TGG - chr2_1:73082549-73082568 None:intergenic 35.0%
CTCTATTCAATCAAGCATCA+AGG + chr2_1:73082552-73082571 Msa0223500:CDS 35.0%
! AGAAGAATGGTACTTTTCTG+CGG - chr2_1:73082719-73082738 None:intergenic 35.0%
CTATCAGGAAAGTAGAAGAA+TGG - chr2_1:73082732-73082751 None:intergenic 35.0%
! TGTGTTGACAAACTCAGATT+CGG + chr2_1:73082814-73082833 Msa0223500:three_prime_UTR 35.0%
!!! CTATATTTTGGAGGTATCCT+TGG + chr2_1:73082908-73082927 Msa0223500:three_prime_UTR 35.0%
ACTCCCATGAAGTTCAATAA+AGG - chr2_1:73082971-73082990 None:intergenic 35.0%
GGTCGAATCATTAAAGATGT+AGG - chr2_1:73083076-73083095 None:intergenic 35.0%
TTAATGATTCGACCTCGTAT+CGG + chr2_1:73083082-73083101 Msa0223500:intron 35.0%
! AATTTCAAGTACTGCATTGC+AGG - chr2_1:73083165-73083184 None:intergenic 35.0%
AAAACTCCTTTATATGCCAC+TGG + chr2_1:73083258-73083277 Msa0223500:three_prime_UTR 35.0%
TACATACCAGTGGCATATAA+AGG - chr2_1:73083267-73083286 None:intergenic 35.0%
!! GTATGTTTGTTGTAATCCAG+TGG + chr2_1:73083337-73083356 Msa0223500:intron 35.0%
CTGAGATATAACATGTGCAA+TGG - chr2_1:73083435-73083454 None:intergenic 35.0%
AATTGCAGATGTTTGATGCT+TGG - chr2_1:73083665-73083684 None:intergenic 35.0%
!! TTCGATCGATTTGCCAAAAA+TGG + chr2_1:73083683-73083702 Msa0223500:three_prime_UTR 35.0%
! TCGATTTGCCAAAAATGGTA+AGG + chr2_1:73083688-73083707 Msa0223500:intron 35.0%
CGATTTGCCAAAAATGGTAA+GGG + chr2_1:73083689-73083708 Msa0223500:intron 35.0%
! CAGCAGAGATATATTTTCTG+GGG + chr2_1:73083758-73083777 Msa0223500:intron 35.0%
! CACTCCTTTTACGTTCAAAT+CGG + chr2_1:73083863-73083882 Msa0223500:intron 35.0%
CCTGCATGACAATAATGAAA+TGG - chr2_1:73083910-73083929 None:intergenic 35.0%
CCATTTCATTATTGTCATGC+AGG + chr2_1:73083907-73083926 Msa0223500:intron 35.0%
CTTCCGAAAAAACATCATCT+TGG + chr2_1:73084144-73084163 Msa0223500:intron 35.0%
TGCTAACAAGGACTATGAAA+AGG + chr2_1:73084193-73084212 Msa0223500:three_prime_UTR 35.0%
! ATCGCTGATCCTTTTTAACA+AGG + chr2_1:73084265-73084284 Msa0223500:intron 35.0%
TTCAAAAAGCAATTAGCGAG+CGG - chr2_1:73084301-73084320 None:intergenic 35.0%
! TGTTTGGCCTTTGTATTTGA+TGG + chr2_1:73084610-73084629 Msa0223500:three_prime_UTR 35.0%
GTTGACACCATCAAATACAA+AGG - chr2_1:73084620-73084639 None:intergenic 35.0%
!! GTATTTGATGGTGTCAACTT+TGG + chr2_1:73084622-73084641 Msa0223500:three_prime_UTR 35.0%
!! ATTTGATGGTGTCAACTTTG+GGG + chr2_1:73084624-73084643 Msa0223500:three_prime_UTR 35.0%
ATGGATGAAGTTACATACCA+TGG - chr2_1:73084677-73084696 None:intergenic 35.0%
!! TTTATTTTCAGCCTTCTCCA+TGG + chr2_1:73084717-73084736 Msa0223500:intron 35.0%
GATGCAGTTTCAAATATACG+CGG + chr2_1:73084787-73084806 Msa0223500:intron 35.0%
TGTTTGTGTTAGCGCTTTAT+AGG + chr2_1:73084909-73084928 Msa0223500:intron 35.0%
AAAACATTGTAGCGAGAGTT+TGG - chr2_1:73084944-73084963 None:intergenic 35.0%
ATGAAGTTAACGACGATTAG+TGG + chr2_1:73084983-73085002 Msa0223500:intron 35.0%
TCATGTCATTCTTCATTCTC+AGG + chr2_1:73085016-73085035 Msa0223500:intron 35.0%
TCTTCATTCTCAGGTTATAG+TGG + chr2_1:73085025-73085044 Msa0223500:intron 35.0%
!!! CTACTTATTTTGTCATCTGC+TGG + chr2_1:73085068-73085087 Msa0223500:three_prime_UTR 35.0%
!! TGGTGGATTCATTGGAATTT+GGG + chr2_1:73085088-73085107 Msa0223500:three_prime_UTR 35.0%
GAACTATTATGATGCAGGAT+TGG + chr2_1:73085263-73085282 Msa0223500:intron 35.0%
! GATTATGTATTGATGTTGCC+AGG - chr2_1:73085335-73085354 None:intergenic 35.0%
GCATGATTGTGATATCTTGT+TGG + chr2_1:73085468-73085487 Msa0223500:three_prime_UTR 35.0%
!! CTATACATCTTCTAAAGCTG+AGG - chr2_1:73085513-73085532 None:intergenic 35.0%
GCCCCACATTAACATATTTG+TGG + chr2_1:73081088-73081107 Msa0223500:five_prime_UTR 40.0%
! GGACTTGTTTGAGACGAAAA+AGG - chr2_1:73081117-73081136 None:intergenic 40.0%
! GTATCGACCAATGATGCTAT+AGG - chr2_1:73082123-73082142 None:intergenic 40.0%
CATACCTAATTGGCCAATGA+AGG - chr2_1:73082148-73082167 None:intergenic 40.0%
CTCAAATCTTGTGCATGTGT+TGG - chr2_1:73082297-73082316 None:intergenic 40.0%
TATCCATTCACTTGTGAGAC+AGG - chr2_1:73082329-73082348 None:intergenic 40.0%
! AAGTTGTGACACTGACTAGT+GGG - chr2_1:73082589-73082608 None:intergenic 40.0%
! CAGTGTCACAACTTCTTTTG+TGG + chr2_1:73082595-73082614 Msa0223500:CDS 40.0%
! AACTCTTTGGTTTCAGCATC+CGG - chr2_1:73082692-73082711 None:intergenic 40.0%
TTTCTGCGGTAAGAACTCTT+TGG - chr2_1:73082705-73082724 None:intergenic 40.0%
! GGTTTTCCTGTTGAGAAACA+AGG - chr2_1:73082764-73082783 None:intergenic 40.0%
!! AGGTTGATGGAAGTAAGAGA+AGG + chr2_1:73082861-73082880 Msa0223500:three_prime_UTR 40.0%
TCTTCTTTCATTAGCGATGC+AGG + chr2_1:73083209-73083228 Msa0223500:three_prime_UTR 40.0%
CTTCTTTCATTAGCGATGCA+GGG + chr2_1:73083210-73083229 Msa0223500:three_prime_UTR 40.0%
TACTTTCAGCTATACTCCTG+TGG + chr2_1:73083609-73083628 Msa0223500:three_prime_UTR 40.0%
CTTGTTTGTTCAAACTCCAC+AGG - chr2_1:73083628-73083647 None:intergenic 40.0%
TGAACGTAAAAGGAGTGACA+TGG - chr2_1:73083860-73083879 None:intergenic 40.0%
TTCAAGTCTGTCTGCAAGTT+TGG + chr2_1:73084025-73084044 Msa0223500:three_prime_UTR 40.0%
TGTAGAACACCTGCAATACT+CGG - chr2_1:73084235-73084254 None:intergenic 40.0%
TAATATAATGCAGATGGGCG+TGG + chr2_1:73084355-73084374 Msa0223500:intron 40.0%
TTCGCACTTGCATTCATTCT+TGG + chr2_1:73084386-73084405 Msa0223500:three_prime_UTR 40.0%
CTTGCATTCATTCTTGGAAC+AGG + chr2_1:73084392-73084411 Msa0223500:three_prime_UTR 40.0%
TCCTACACCTCATTAGAGTT+GGG + chr2_1:73084456-73084475 Msa0223500:three_prime_UTR 40.0%
TACAAAGGCCAAACAGTTCA+GGG - chr2_1:73084605-73084624 None:intergenic 40.0%
ATACAAAGGCCAAACAGTTC+AGG - chr2_1:73084606-73084625 None:intergenic 40.0%
GAAGTTACATACCATGGAGA+AGG - chr2_1:73084671-73084690 None:intergenic 40.0%
ATATAGACTCTCCATGGAGA+AGG - chr2_1:73084731-73084750 None:intergenic 40.0%
!!! CTTATTTTGTCATCTGCTGG+TGG + chr2_1:73085071-73085090 Msa0223500:three_prime_UTR 40.0%
!! CTGGTGGATTCATTGGAATT+TGG + chr2_1:73085087-73085106 Msa0223500:three_prime_UTR 40.0%
ATGAGTTTAAGAGCCTTTGC+TGG + chr2_1:73085128-73085147 Msa0223500:three_prime_UTR 40.0%
TCCAAGACACTTGCAACATT+TGG + chr2_1:73085220-73085239 Msa0223500:intron 40.0%
TCCAAATGTTGCAAGTGTCT+TGG - chr2_1:73085224-73085243 None:intergenic 40.0%
TTATGATGCAGGATTGGAAC+TGG + chr2_1:73085269-73085288 Msa0223500:intron 40.0%
TATGATGCAGGATTGGAACT+GGG + chr2_1:73085270-73085289 Msa0223500:intron 40.0%
ATTTGGCCACAGTTTGATTG+TGG + chr2_1:73085364-73085383 Msa0223500:three_prime_UTR 40.0%
TGTGAACCACAATCAAACTG+TGG - chr2_1:73085373-73085392 None:intergenic 40.0%
GTGAATTGGCACTTCAGAGA+TGG + chr2_1:73081712-73081731 Msa0223500:intron 45.0%
GCACTTTCTTCAAGGATGCT+AGG + chr2_1:73081786-73081805 Msa0223500:CDS 45.0%
GGCTGATCCTATAGCATCAT+TGG + chr2_1:73082113-73082132 Msa0223500:CDS 45.0%
AAGCCTGTCTCACAAGTGAA+TGG + chr2_1:73082323-73082342 Msa0223500:intron 45.0%
! GAAGTTGTGACACTGACTAG+TGG - chr2_1:73082590-73082609 None:intergenic 45.0%
! CACAACTTCTTTTGTGGCTG+AGG + chr2_1:73082601-73082620 Msa0223500:CDS 45.0%
TCCTGTTGAGAAACAAGGCT+TGG - chr2_1:73082759-73082778 None:intergenic 45.0%
! GCTTCGTCAGCGCTATATTT+TGG + chr2_1:73082896-73082915 Msa0223500:three_prime_UTR 45.0%
!! TCGTCAGCGCTATATTTTGG+AGG + chr2_1:73082899-73082918 Msa0223500:three_prime_UTR 45.0%
CAGAAATAAGCAACGTTGCC+TGG - chr2_1:73082940-73082959 None:intergenic 45.0%
TGCATTGCAGGATGTAGCAT+AGG - chr2_1:73083153-73083172 None:intergenic 45.0%
GCTAATGAAAGAAGAACCGC+AGG - chr2_1:73083204-73083223 None:intergenic 45.0%
!! GTTTGTTGTAATCCAGTGGC+AGG + chr2_1:73083341-73083360 Msa0223500:intron 45.0%
TGCAGATGTTTGATGCTTGG+AGG - chr2_1:73083662-73083681 None:intergenic 45.0%
ACGTAAAAGGAGTGACATGG+AGG - chr2_1:73083857-73083876 None:intergenic 45.0%
ACAGACTTGAAATGCAGCCA+TGG - chr2_1:73084016-73084035 None:intergenic 45.0%
AGTCTGTCTGCAAGTTTGGT+TGG + chr2_1:73084029-73084048 Msa0223500:three_prime_UTR 45.0%
TGAATCATATCTCACCTGCC+CGG - chr2_1:73084088-73084107 None:intergenic 45.0%
! TGCAGGTGCATTTGCTAACA+AGG + chr2_1:73084181-73084200 Msa0223500:three_prime_UTR 45.0%
GTAGAACACCTGCAATACTC+GGG - chr2_1:73084234-73084253 None:intergenic 45.0%
CTTGGAACAGGATTGCACTT+TGG + chr2_1:73084404-73084423 Msa0223500:three_prime_UTR 45.0%
GTCCTACACCTCATTAGAGT+TGG + chr2_1:73084455-73084474 Msa0223500:three_prime_UTR 45.0%
CCTACACCTCATTAGAGTTG+GGG + chr2_1:73084457-73084476 Msa0223500:three_prime_UTR 45.0%
GTTGAGTGAGTGCTACAAAC+TGG - chr2_1:73084582-73084601 None:intergenic 45.0%
ACAAAGGCCAAACAGTTCAG+GGG - chr2_1:73084604-73084623 None:intergenic 45.0%
TGCATATTCAGCCTTCTCCA+TGG + chr2_1:73084657-73084676 Msa0223500:three_prime_UTR 45.0%
GCTAACACAAACACAGACAC+TGG - chr2_1:73084902-73084921 None:intergenic 45.0%
!! TCATCTGCTGGTGGATTCAT+TGG + chr2_1:73085080-73085099 Msa0223500:three_prime_UTR 45.0%
TTACCTCAAGAAGCCAGCAA+AGG - chr2_1:73085144-73085163 None:intergenic 45.0%
TAGCTCCTAAGGAATTCCCA+TGG - chr2_1:73085302-73085321 None:intergenic 45.0%
GTGATATCTTGTTGGGGCAT+CGG + chr2_1:73085476-73085495 Msa0223500:three_prime_UTR 45.0%
!! AAGTTTATATAAAAATAAAT+TGG - chr2_1:73085724-73085743 None:intergenic 5.0%
!!! ATTTATTTTTATATAAACTT+TGG + chr2_1:73085724-73085743 Msa0223500:three_prime_UTR 5.0%
AATTGCTTTGCCCGCTGCAA+TGG + chr2_1:73082083-73082102 Msa0223500:CDS 50.0%
TTGGTCGATACGGCCTTCAT+TGG + chr2_1:73082132-73082151 Msa0223500:CDS 50.0%
ACGGCCTTCATTGGCCAATT+AGG + chr2_1:73082141-73082160 Msa0223500:CDS 50.0%
! ATTGGTCTCTACAGGTCCAG+TGG + chr2_1:73082502-73082521 Msa0223500:intron 50.0%
AGCTCACAGGTAGAGGAGAA+TGG + chr2_1:73082644-73082663 Msa0223500:CDS 50.0%
GGTAGAGGAGAATGGATGCT+TGG + chr2_1:73082652-73082671 Msa0223500:CDS 50.0%
! TCTTTGGTTTCAGCATCCGG+AGG - chr2_1:73082689-73082708 None:intergenic 50.0%
ACAAGGCTTGGCAGACTATC+AGG - chr2_1:73082747-73082766 None:intergenic 50.0%
!! GCCAAGCCTTGTTTCTCAAC+AGG + chr2_1:73082755-73082774 Msa0223500:three_prime_UTR 50.0%
!! TATAGCGCTGACGAAGCTGA+AGG - chr2_1:73082893-73082912 None:intergenic 50.0%
! AATCATCGTGTGCCGATACG+AGG - chr2_1:73083097-73083116 None:intergenic 50.0%
TGTCGACGCATACATACCAG+TGG - chr2_1:73083277-73083296 None:intergenic 50.0%
TTCGTCAAATCTCCTGCCAC+TGG - chr2_1:73083356-73083375 None:intergenic 50.0%
GTATTCCGCATGGGTGTCAA+CGG + chr2_1:73083404-73083423 Msa0223500:three_prime_UTR 50.0%
GGTAACATTCTGCGTGACAC+TGG + chr2_1:73083957-73083976 Msa0223500:three_prime_UTR 50.0%
GCATCATTAGCTGCACACCA+CGG + chr2_1:73083982-73084001 Msa0223500:three_prime_UTR 50.0%
ACACCACGGATCAACATCCA+TGG + chr2_1:73083996-73084015 Msa0223500:three_prime_UTR 50.0%
TGGTTTCAGGCGATTCTTGC+AGG + chr2_1:73084164-73084183 Msa0223500:intron 50.0%
TACTCGGGTAGCAGTTGTTG+AGG - chr2_1:73084219-73084238 None:intergenic 50.0%
! AACTGCTACCCGAGTATTGC+AGG + chr2_1:73084223-73084242 Msa0223500:three_prime_UTR 50.0%
CCCCAACTCTAATGAGGTGT+AGG - chr2_1:73084460-73084479 None:intergenic 50.0%
CACTCAACCCCTGAACTGTT+TGG + chr2_1:73084594-73084613 Msa0223500:three_prime_UTR 50.0%
CAGGACCATGGGAATTCCTT+AGG + chr2_1:73085294-73085313 Msa0223500:three_prime_UTR 50.0%
AGCCGTCAAAGCCATTGCAG+CGG - chr2_1:73082097-73082116 None:intergenic 55.0%
CTGTGAGCTTGCGTCGCTTA+AGG - chr2_1:73082633-73082652 None:intergenic 55.0%
CTTAAGCGACGCAAGCTCAC+AGG + chr2_1:73082631-73082650 Msa0223500:CDS 55.0%
TAAGCAACGTTGCCTGGACG+AGG - chr2_1:73082934-73082953 None:intergenic 55.0%
!! GAGATCTCTTGGTGCTCCTG+CGG + chr2_1:73083185-73083204 Msa0223500:three_prime_UTR 55.0%
! GCGATGCAGGGAGTTTTTCG+AGG + chr2_1:73083222-73083241 Msa0223500:three_prime_UTR 55.0%
CAGCCATGGATGTTGATCCG+TGG - chr2_1:73084002-73084021 None:intergenic 55.0%
GTTGGCAGTGTCCCTTCTTG+CGG + chr2_1:73084047-73084066 Msa0223500:three_prime_UTR 55.0%
AGCCAGACCATCCGCAAGAA+GGG - chr2_1:73084061-73084080 None:intergenic 55.0%
ATGCAGATGGGCGTGGTTCT+TGG + chr2_1:73084362-73084381 Msa0223500:intron 55.0%
CCTCATTAGAGTTGGGGTCC+CGG + chr2_1:73084463-73084482 Msa0223500:three_prime_UTR 55.0%
!! GAGCCTTTGCTGGCTTCTTG+AGG + chr2_1:73085138-73085157 Msa0223500:three_prime_UTR 55.0%
TGCAGGATTGGAACTGGGTC+AGG + chr2_1:73085275-73085294 Msa0223500:intron 55.0%
TTGGAACTGGGTCAGGACCA+TGG + chr2_1:73085282-73085301 Msa0223500:three_prime_UTR 55.0%
TGGAACTGGGTCAGGACCAT+GGG + chr2_1:73085283-73085302 Msa0223500:three_prime_UTR 55.0%
GCTAGCGCACTTAGCTCCTA+AGG - chr2_1:73085313-73085332 None:intergenic 55.0%
!! GCCCGCTGCAATGGCTTTGA+CGG + chr2_1:73082092-73082111 Msa0223500:CDS 60.0%
GCCGTCAAAGCCATTGCAGC+GGG - chr2_1:73082096-73082115 None:intergenic 60.0%
CCTACTGCAGCAAGCTCCAC+TGG - chr2_1:73082521-73082540 None:intergenic 60.0%
!! CCAGTGGAGCTTGCTGCAGT+AGG + chr2_1:73082518-73082537 Msa0223500:CDS 60.0%
CGACGCAAGCTCACAGGTAG+AGG + chr2_1:73082637-73082656 Msa0223500:CDS 60.0%
CTTGGAAGCTGCGACACCTC+CGG + chr2_1:73082670-73082689 Msa0223500:CDS 60.0%
AGGTATCCTTGGCCTCGTCC+AGG + chr2_1:73082919-73082938 Msa0223500:three_prime_UTR 60.0%
CTGCACCGTTGACACCCATG+CGG - chr2_1:73083412-73083431 None:intergenic 60.0%
GCAGTGTCCCTTCTTGCGGA+TGG + chr2_1:73084051-73084070 Msa0223500:three_prime_UTR 60.0%
GTCCCTTCTTGCGGATGGTC+TGG + chr2_1:73084056-73084075 Msa0223500:three_prime_UTR 60.0%
CAGCCAGACCATCCGCAAGA+AGG - chr2_1:73084062-73084081 None:intergenic 60.0%
CCGGGACCCCAACTCTAATG+AGG - chr2_1:73084466-73084485 None:intergenic 60.0%
AGGAGCTAAGTGCGCTAGCC+TGG + chr2_1:73085314-73085333 Msa0223500:three_prime_UTR 60.0%
ACGTTGCCTGGACGAGGCCA+AGG - chr2_1:73082928-73082947 None:intergenic 65.0%
GCGGATGGTCTGGCTGTTGC+CGG + chr2_1:73084066-73084085 Msa0223500:three_prime_UTR 65.0%
CGGATGGTCTGGCTGTTGCC+GGG + chr2_1:73084067-73084086 Msa0223500:three_prime_UTR 65.0%
TGGTCTGGCTGTTGCCGGGC+AGG + chr2_1:73084071-73084090 Msa0223500:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 73081072 73085747 73081072 ID=Msa0223500;Name=Msa0223500
chr2_1 mRNA 73081072 73085747 73081072 ID=Msa0223500-mRNA-1;Parent=Msa0223500;Name=Msa0223500-mRNA-1;_AED=0.18;_eAED=0.18;_QI=245|1|1|1|0.91|0.76|13|1622|143
chr2_1 exon 73081072 73081298 73081072 ID=Msa0223500-mRNA-1:exon:21267;Parent=Msa0223500-mRNA-1
chr2_1 exon 73081713 73081807 73081713 ID=Msa0223500-mRNA-1:exon:21268;Parent=Msa0223500-mRNA-1
chr2_1 exon 73082041 73082162 73082041 ID=Msa0223500-mRNA-1:exon:21269;Parent=Msa0223500-mRNA-1
chr2_1 exon 73082516 73082997 73082516 ID=Msa0223500-mRNA-1:exon:21270;Parent=Msa0223500-mRNA-1
chr2_1 exon 73083144 73083279 73083144 ID=Msa0223500-mRNA-1:exon:21271;Parent=Msa0223500-mRNA-1
chr2_1 exon 73083357 73083453 73083357 ID=Msa0223500-mRNA-1:exon:21272;Parent=Msa0223500-mRNA-1
chr2_1 exon 73083604 73083704 73083604 ID=Msa0223500-mRNA-1:exon:21273;Parent=Msa0223500-mRNA-1
chr2_1 exon 73083929 73084092 73083929 ID=Msa0223500-mRNA-1:exon:21274;Parent=Msa0223500-mRNA-1
chr2_1 exon 73084173 73084244 73084173 ID=Msa0223500-mRNA-1:exon:21275;Parent=Msa0223500-mRNA-1
chr2_1 exon 73084368 73084484 73084368 ID=Msa0223500-mRNA-1:exon:21276;Parent=Msa0223500-mRNA-1
chr2_1 exon 73084583 73084678 73084583 ID=Msa0223500-mRNA-1:exon:21277;Parent=Msa0223500-mRNA-1
chr2_1 exon 73085038 73085159 73085038 ID=Msa0223500-mRNA-1:exon:21278;Parent=Msa0223500-mRNA-1
chr2_1 exon 73085280 73085747 73085280 ID=Msa0223500-mRNA-1:exon:21279;Parent=Msa0223500-mRNA-1
chr2_1 five_prime_UTR 73081072 73081298 73081072 ID=Msa0223500-mRNA-1:five_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 five_prime_UTR 73081713 73081730 73081713 ID=Msa0223500-mRNA-1:five_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 CDS 73081731 73081807 73081731 ID=Msa0223500-mRNA-1:cds;Parent=Msa0223500-mRNA-1
chr2_1 CDS 73082041 73082162 73082041 ID=Msa0223500-mRNA-1:cds;Parent=Msa0223500-mRNA-1
chr2_1 CDS 73082516 73082748 73082516 ID=Msa0223500-mRNA-1:cds;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73082749 73082997 73082749 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73083144 73083279 73083144 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73083357 73083453 73083357 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73083604 73083704 73083604 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73083929 73084092 73083929 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73084173 73084244 73084173 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73084368 73084484 73084368 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73084583 73084678 73084583 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73085038 73085159 73085038 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
chr2_1 three_prime_UTR 73085280 73085747 73085280 ID=Msa0223500-mRNA-1:three_prime_utr;Parent=Msa0223500-mRNA-1
Gene Sequence

>Msa0223500

ATGGCAGAGAAAGAGAGTTTGTTTTCTATAGGTGATTGGATGAGAATACCTATTTGCACTTTCTTCAAGGATGCTAGACTAGTATTTAAATTAGACGATCTTGGTCGCGAAATATTGTCAATTGCTTTGCCCGCTGCAATGGCTTTGACGGCTGATCCTATAGCATCATTGGTCGATACGGCCTTCATTGGCCAATTAGGTCCAGTGGAGCTTGCTGCAGTAGGAGTTTCCATAGCTCTATTCAATCAAGCATCAAGGATCTTTATATTCCCACTAGTCAGTGTCACAACTTCTTTTGTGGCTGAGGAAGATGCCTTAAGCGACGCAAGCTCACAGGTAGAGGAGAATGGATGCTTGGAAGCTGCGACACCTCCGGATGCTGAAACCAAAGAGTTCTTACCGCAGAAAAGTACCATTCTTCTACTTTCCTGA

Protein sequence

>Msa0223500

MAEKESLFSIGDWMRIPICTFFKDARLVFKLDDLGREILSIALPAAMALTADPIASLVDTAFIGQLGPVELAAVGVSIALFNQASRIFIFPLVSVTTSFVAEEDALSDASSQVEENGCLEAATPPDAETKEFLPQKSTILLLS*