AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037330 MtrunA17_Chr1g0201031 98.824 255 3 0 1 255 1 255 0.0 525
Msa0037330 MtrunA17_Chr5g0416951 66.800 250 80 2 8 254 9 258 8.33e-129 365
Msa0037330 MtrunA17_Chr1g0201041 95.455 132 6 0 75 206 1 132 9.88e-84 246
Msa0037330 MtrunA17_Chr8g0364601 33.333 177 100 8 89 255 103 271 1.10e-15 74.7
Msa0037330 MtrunA17_Chr5g0414141 34.783 161 90 7 89 242 103 255 4.98e-15 72.8
Msa0037330 MtrunA17_Chr6g0466381 28.500 200 122 8 35 224 50 238 1.77e-13 68.2
Msa0037330 MtrunA17_Chr6g0465561 34.266 143 80 6 89 224 103 238 4.39e-13 67.0
Msa0037330 MtrunA17_Chr4g0056801 30.189 159 102 4 89 243 121 274 9.56e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037330 AT1G14290.1 67.871 249 78 2 8 254 6 254 1.75e-128 364
Msa0037330 AT1G69640.1 67.600 250 79 2 8 255 7 256 2.06e-119 342
Msa0037330 AT1G14290.2 70.000 180 53 1 76 254 1 180 8.78e-96 279
Msa0037330 AT2G29390.6 32.919 161 93 7 89 242 20 172 4.21e-13 66.2
Msa0037330 AT2G29390.4 32.919 161 93 7 89 242 20 172 4.21e-13 66.2
Msa0037330 AT2G29390.5 32.919 161 93 7 89 242 62 214 1.18e-12 65.9
Msa0037330 AT2G29390.2 32.919 161 93 7 89 242 103 255 1.59e-12 65.9
Msa0037330 AT2G29390.3 32.919 161 93 7 89 242 96 248 2.08e-12 65.5
Msa0037330 AT2G29390.1 31.579 171 94 7 89 242 103 267 4.91e-12 64.7
Msa0037330 AT1G07420.2 31.447 159 98 6 89 242 65 217 6.90e-12 63.9
Msa0037330 AT1G07420.1 31.447 159 98 6 89 242 103 255 7.92e-12 63.9

Find 97 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCTCGTTTCTTGTTTC+AGG 0.088504 1_1:+66336342 Msa0037330:CDS
AAATTGAATTATTGGGTAAT+TGG 0.113537 1_1:-66333137 None:intergenic
ACCTTTCACAACTGCTTTAA+AGG 0.133433 1_1:-66333905 None:intergenic
TTATATCAAAATTGAATTAT+TGG 0.182968 1_1:-66333145 None:intergenic
CTTTCTCCCTCAAACGTGTT+TGG 0.222136 1_1:-66333069 None:intergenic
CCCATATGGGATAAAATTCT+TGG 0.251647 1_1:+66336546 Msa0037330:CDS
TTGCTCCTATTGTGGTTTAT+TGG 0.252719 1_1:+66333794 Msa0037330:CDS
CGGGAGTGTGTAATAGTTTA+GGG 0.264391 1_1:+66333104 Msa0037330:five_prime_UTR
CATGATACGCAGTGTTATTC+TGG 0.264396 1_1:-66336470 None:intergenic
TATATCAAAATTGAATTATT+GGG 0.271986 1_1:-66333144 None:intergenic
ACGGGAGTGTGTAATAGTTT+AGG 0.279188 1_1:+66333103 Msa0037330:five_prime_UTR
AATTGAATTATTGGGTAATT+GGG 0.298393 1_1:-66333136 None:intergenic
TTTCTCCCTCAAACGTGTTT+GGG 0.303636 1_1:-66333068 None:intergenic
ACTCAAATAGTTTCAGATTA+GGG 0.309648 1_1:-66337006 None:intergenic
ACATTTAACTAGTCCTTTGC+AGG 0.314305 1_1:-66336624 None:intergenic
AGATGAAGAAAAGAAGAATT+TGG 0.338961 1_1:+66333879 Msa0037330:CDS
CTGGTTGTTCCTTATGCAAT+AGG 0.347826 1_1:+66336267 Msa0037330:CDS
CTCAGCCGTTCTTCCCCATA+TGG 0.348493 1_1:+66336532 Msa0037330:CDS
CACTCAAATAGTTTCAGATT+AGG 0.349824 1_1:-66337007 None:intergenic
TTTGCTTCAGCAGCTTGTTC+AGG 0.364001 1_1:+66333930 Msa0037330:CDS
ATAATTTGCTTAGTGATAGA+AGG 0.372759 1_1:-66336135 None:intergenic
CCATCTCGTTTCTTGTTTCA+GGG 0.376474 1_1:+66336343 Msa0037330:CDS
CGAGTTGATTGGAGCTTGTA+GGG 0.380020 1_1:+66336702 Msa0037330:three_prime_UTR
TATGATGCTGGGAGTGGATA+TGG 0.383976 1_1:-66336242 None:intergenic
TCGAGTTGATTGGAGCTTGT+AGG 0.392106 1_1:+66336701 Msa0037330:three_prime_UTR
GGCAATTGTTGCACTCATCT+TGG 0.392694 1_1:+66333951 Msa0037330:CDS
TATATCCAATAAACCACAAT+AGG 0.395149 1_1:-66333799 None:intergenic
CCTTTCACAACTGCTTTAAA+GGG 0.396867 1_1:-66333904 None:intergenic
CTAGTTAAATGTAATTGTTA+TGG 0.403282 1_1:+66336635 Msa0037330:exon
TCAAGTAGAAGACCCTCAAT+AGG 0.417783 1_1:-66336306 None:intergenic
TCAGATCTAGCTGGGGCAAA+TGG 0.419591 1_1:-66333221 None:intergenic
CACTGTGGTCTGTGGTTACC+CGG 0.436357 1_1:+66336426 Msa0037330:CDS
AAATAAATGGAAGATATTGC+CGG 0.443740 1_1:-66336445 None:intergenic
CTCAATAGGGTGATTGTAAA+GGG 0.448695 1_1:-66336292 None:intergenic
TGTCTCCCAAACACGTTTGA+GGG 0.456899 1_1:+66333063 Msa0037330:five_prime_UTR
ACGACAACATCAAATGCATC+AGG 0.459441 1_1:+66336099 Msa0037330:CDS
GTGGTTTATTGGATATATGC+TGG 0.466288 1_1:+66333805 Msa0037330:CDS
TCAGCCGTTCTTCCCCATAT+GGG 0.471141 1_1:+66336533 Msa0037330:CDS
TAAAGGGCTCCTATTGCATA+AGG 0.471174 1_1:-66336276 None:intergenic
TTGTCTCCCAAACACGTTTG+AGG 0.475414 1_1:+66333062 Msa0037330:five_prime_UTR
CCATATGGGATAAAATTCTT+GGG 0.479913 1_1:+66336547 Msa0037330:CDS
GAACAACCAGTCTATGATGC+TGG 0.480709 1_1:-66336254 None:intergenic
CTTCTACTTGACACTGTTGG+TGG 0.482026 1_1:+66336318 Msa0037330:CDS
CCTTTACAATCACCCTATTG+AGG 0.483901 1_1:+66336293 Msa0037330:CDS
TTCCTTCTTTAGATAACTAC+CGG 0.488803 1_1:+66333842 Msa0037330:CDS
CATCTCTCGTAGTATGCAAC+CGG 0.498885 1_1:-66333861 None:intergenic
CCTCAATAGGGTGATTGTAA+AGG 0.505833 1_1:-66336293 None:intergenic
CCCTTTAAAGCAGTTGTGAA+AGG 0.507083 1_1:+66333904 Msa0037330:CDS
AATTGTGGATCAGATCTAGC+TGG 0.507556 1_1:-66333230 None:intergenic
GGAGAAAGAAAGAAGGTTCA+CGG 0.508282 1_1:+66333084 Msa0037330:five_prime_UTR
GAGAAAGAAAGAAGGTTCAC+GGG 0.509534 1_1:+66333085 Msa0037330:five_prime_UTR
CAATGTTTGTGATGGATACA+TGG 0.513406 1_1:+66336172 Msa0037330:CDS
CATTATTGCAATGTTTGTGA+TGG 0.518217 1_1:+66336164 Msa0037330:CDS
CCAGTCTATGATGCTGGGAG+TGG 0.524885 1_1:-66336248 None:intergenic
CTTTACAATCACCCTATTGA+GGG 0.525857 1_1:+66336294 Msa0037330:CDS
AATGTCCGCAGTTAAGCCTC+TGG 0.527726 1_1:-66336676 None:intergenic
GGGCTAAAGTTTCTAATGCA+TGG 0.528066 1_1:-66336986 None:intergenic
CAAGTAGAAGACCCTCAATA+GGG 0.537000 1_1:-66336305 None:intergenic
AACCGGTAGTTATCTAAAGA+AGG 0.541583 1_1:-66333844 None:intergenic
AATAAATGGAAGATATTGCC+GGG 0.546549 1_1:-66336444 None:intergenic
GCTCGCTTTACAAGATTGAA+AGG 0.546553 1_1:-66336579 None:intergenic
AATCTTGTAAAGCGAGCCGA+AGG 0.547097 1_1:+66336585 Msa0037330:CDS
AACAACCAGTCTATGATGCT+GGG 0.558768 1_1:-66336253 None:intergenic
GACATTCATCATCAACTACA+AGG 0.561633 1_1:+66336492 Msa0037330:CDS
GGTCTTCTACTTGACACTGT+TGG 0.565759 1_1:+66336315 Msa0037330:CDS
ATCATCATCTTTGTTACAGT+AGG 0.567302 1_1:+66336755 Msa0037330:three_prime_UTR
ATTGTGGATCAGATCTAGCT+GGG 0.571273 1_1:-66333229 None:intergenic
CCACTCCCAGCATCATAGAC+TGG 0.571714 1_1:+66336248 Msa0037330:CDS
TTATGCTACACAAGGTGGGT+TGG 0.579690 1_1:-66336783 None:intergenic
CATTGTTATGCTACACAAGG+TGG 0.580875 1_1:-66336788 None:intergenic
CCCTGAAACAAGAAACGAGA+TGG 0.588004 1_1:-66336343 None:intergenic
TACAACTTTAAGTTCGAGCG+TGG 0.590612 1_1:+66336949 Msa0037330:three_prime_UTR
AGCAAAGCAGAAGAATATAA+CGG 0.591784 1_1:-66336382 None:intergenic
TTATCCCATATGGGGAAGAA+CGG 0.595766 1_1:-66336537 None:intergenic
CGACAACATCAAATGCATCA+GGG 0.607921 1_1:+66336100 Msa0037330:CDS
ATATGTGAGTGATGAAGTGA+TGG 0.610503 1_1:+66333765 Msa0037330:CDS
TCTTGTAAAGCGAGCCGAAG+GGG 0.614150 1_1:+66336587 Msa0037330:CDS
GTTTGAGGGAGAAAGAAAGA+AGG 0.616320 1_1:+66333077 Msa0037330:five_prime_UTR
CATGGCAGTACTTTGTGCAT+CGG 0.619022 1_1:+66336190 Msa0037330:CDS
ATTGTTATGCTACACAAGGT+GGG 0.619972 1_1:-66336787 None:intergenic
GAGTTGATTGGAGCTTGTAG+GGG 0.626568 1_1:+66336703 Msa0037330:three_prime_UTR
TTGACGACCACTGTGGTCTG+TGG 0.626742 1_1:+66336418 Msa0037330:CDS
ATCTTGTAAAGCGAGCCGAA+GGG 0.633355 1_1:+66336586 Msa0037330:CDS
CTTGTAAAGCGAGCCGAAGG+GGG 0.644126 1_1:+66336588 Msa0037330:CDS
CATCATTGTTATGCTACACA+AGG 0.661913 1_1:-66336791 None:intergenic
GACAACATCAAATGCATCAG+GGG 0.662868 1_1:+66336101 Msa0037330:CDS
TATGTGAGTGATGAAGTGAT+GGG 0.680711 1_1:+66333766 Msa0037330:CDS
ACATTCATCATCAACTACAA+GGG 0.680961 1_1:+66336493 Msa0037330:CDS
ATGTGAGTGATGAAGTGATG+GGG 0.702468 1_1:+66333767 Msa0037330:CDS
TGGGGCAAATGGATAAACAG+TGG 0.711250 1_1:-66333210 None:intergenic
GTAGCATAACAATGATGTGG+TGG 0.713293 1_1:+66336797 Msa0037330:three_prime_UTR
TTGTGGATCAGATCTAGCTG+GGG 0.717750 1_1:-66333228 None:intergenic
TGTGTAGCATAACAATGATG+TGG 0.725931 1_1:+66336794 Msa0037330:three_prime_UTR
AAAACTGTTGACGACCACTG+TGG 0.747970 1_1:+66336411 Msa0037330:CDS
GATGCTGGGAGTGGATATGG+CGG 0.760121 1_1:-66336239 None:intergenic
TGGAACCAGAGGCTTAACTG+CGG 0.767656 1_1:+66336671 Msa0037330:three_prime_UTR
CGGGTAACCACAGACCACAG+TGG 0.767759 1_1:-66336425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATCAAAATTGAATTATT+GGG - chr1_1:66333147-66333166 None:intergenic 10.0%
!! TTATATCAAAATTGAATTAT+TGG - chr1_1:66333148-66333167 None:intergenic 10.0%
!! ATTATATAAGTTTAAAAAAG+TGG - chr1_1:66333730-66333749 None:intergenic 10.0%
!!! ACTTTTTTAAACTTATATAA+TGG + chr1_1:66333729-66333748 Msa0037330:exon 10.0%
!! TAAAAAAGAATATTACTATT+AGG + chr1_1:66334863-66334882 Msa0037330:intron 10.0%
!!! ATTATTCTTTTTTTTTTTGA+AGG + chr1_1:66335795-66335814 Msa0037330:intron 10.0%
!!! TTATTCTTTTTTTTTTTGAA+GGG + chr1_1:66335796-66335815 Msa0037330:intron 10.0%
!!! TTTCAAAATTTGAAGTTTTT+AGG + chr1_1:66333428-66333447 Msa0037330:intron 15.0%
!! AAAAGAAACAAAATCAAAAA+AGG - chr1_1:66333476-66333495 None:intergenic 15.0%
!!! TTTTTTGATTTTGTTTCTTT+TGG + chr1_1:66333475-66333494 Msa0037330:intron 15.0%
!!! TTTTTGATTTTGTTTCTTTT+GGG + chr1_1:66333476-66333495 Msa0037330:intron 15.0%
!!! TACTTACAAAACATTTTTTA+AGG + chr1_1:66336851-66336870 Msa0037330:three_prime_UTR 15.0%
!!! TTTTTTGACAAGTTTTTTTA+AGG + chr1_1:66336883-66336902 Msa0037330:three_prime_UTR 15.0%
!! AATTGAATTATTGGGTAATT+GGG - chr1_1:66333139-66333158 None:intergenic 20.0%
!! AAATTGAATTATTGGGTAAT+TGG - chr1_1:66333140-66333159 None:intergenic 20.0%
!!! TTCAAACTTTTGAAGATTTT+TGG + chr1_1:66333171-66333190 Msa0037330:five_prime_UTR 20.0%
!!! TTTAAGTATGTTTTAATGTC+TGG + chr1_1:66333384-66333403 Msa0037330:intron 20.0%
!! ACTACATAATTCTTAAACTT+CGG - chr1_1:66333507-66333526 None:intergenic 20.0%
!! GGAAAAAATCAAAATCATTA+AGG - chr1_1:66333582-66333601 None:intergenic 20.0%
!!! ATTTTGATTTTTTCCTTTTC+AGG + chr1_1:66333587-66333606 Msa0037330:intron 20.0%
!!! TTTTGATTTTTTCCTTTTCA+GGG + chr1_1:66333588-66333607 Msa0037330:intron 20.0%
!!! AAACTTATATAATGGTTTTC+TGG + chr1_1:66333737-66333756 Msa0037330:exon 20.0%
!!! AACTTATATAATGGTTTTCT+GGG + chr1_1:66333738-66333757 Msa0037330:exon 20.0%
!! TATAAGAGAAACTATTTAGA+AGG + chr1_1:66334298-66334317 Msa0037330:intron 20.0%
!! AGTGGTATATAAATAAATTC+AGG - chr1_1:66334830-66334849 None:intergenic 20.0%
!!! TTTTATCATTGACAAAATAG+TGG - chr1_1:66334848-66334867 None:intergenic 20.0%
!! TTTATTATATGCAAAGAGAT+TGG - chr1_1:66334965-66334984 None:intergenic 20.0%
!! TACAATTGTCAAATATTAAC+AGG + chr1_1:66335035-66335054 Msa0037330:intron 20.0%
!! ATTCAGTATTAAAGTAAACA+TGG + chr1_1:66335149-66335168 Msa0037330:intron 20.0%
!!! TTTTTATGTTTAGTTAATGC+TGG + chr1_1:66335195-66335214 Msa0037330:intron 20.0%
!! TATATCTACAGGAAATTAAT+TGG - chr1_1:66335717-66335736 None:intergenic 20.0%
!!! TTTTTTTTTTTGAAGGGAAA+GGG + chr1_1:66335802-66335821 Msa0037330:intron 20.0%
!! GTTGATTATAATATAAGCTT+TGG + chr1_1:66336027-66336046 Msa0037330:intron 20.0%
!!! TGTTATTCTGGAAAAATAAA+TGG - chr1_1:66336461-66336480 None:intergenic 20.0%
!! CTAGTTAAATGTAATTGTTA+TGG + chr1_1:66336635-66336654 Msa0037330:exon 20.0%
!! TATTTTACCATATTCTCTTC+TGG + chr1_1:66333323-66333342 Msa0037330:intron 25.0%
!! ATTTTACCATATTCTCTTCT+GGG + chr1_1:66333324-66333343 Msa0037330:intron 25.0%
!!! AATTTGAAGTTTTTAGGTTG+TGG + chr1_1:66333434-66333453 Msa0037330:intron 25.0%
!!! ATTTGAAGTTTTTAGGTTGT+GGG + chr1_1:66333435-66333454 Msa0037330:intron 25.0%
!!! GTTGTTTTAGCATAAAATTG+AGG + chr1_1:66333699-66333718 Msa0037330:five_prime_UTR 25.0%
! TATATCCAATAAACCACAAT+AGG - chr1_1:66333802-66333821 None:intergenic 25.0%
! AGATGAAGAAAAGAAGAATT+TGG + chr1_1:66333879-66333898 Msa0037330:CDS 25.0%
! AGAGTGATTTATAATTCATC+AGG + chr1_1:66334527-66334546 Msa0037330:intron 25.0%
! GAGTGATTTATAATTCATCA+GGG + chr1_1:66334528-66334547 Msa0037330:intron 25.0%
!! TTATAATTCATCAGGGATTT+TGG + chr1_1:66334535-66334554 Msa0037330:intron 25.0%
! ATCAAACTATTACATAGTGT+GGG - chr1_1:66334667-66334686 None:intergenic 25.0%
! AATCAAACTATTACATAGTG+TGG - chr1_1:66334668-66334687 None:intergenic 25.0%
! TTTGGTACAAGTTTATTGTT+GGG - chr1_1:66334707-66334726 None:intergenic 25.0%
!! TTTTGGTACAAGTTTATTGT+TGG - chr1_1:66334708-66334727 None:intergenic 25.0%
!!! AAACGGGTTATATTGAATTT+TGG - chr1_1:66334725-66334744 None:intergenic 25.0%
! AGAATATTACTATTAGGAGT+TGG + chr1_1:66334869-66334888 Msa0037330:intron 25.0%
! GAATATTACTATTAGGAGTT+GGG + chr1_1:66334870-66334889 Msa0037330:intron 25.0%
!! TACTAAAATGGTTGTTTCAA+GGG - chr1_1:66334990-66335009 None:intergenic 25.0%
! GTACTAAAATGACTTATCTT+TGG - chr1_1:66335018-66335037 None:intergenic 25.0%
!!! ACATAAAAAGAAGAGTACTA+TGG - chr1_1:66335184-66335203 None:intergenic 25.0%
! TTTGTAAAAAGACAACTTGT+TGG - chr1_1:66335305-66335324 None:intergenic 25.0%
! ACTTCTGAATTATATCTAGA+GGG - chr1_1:66335420-66335439 None:intergenic 25.0%
!! CTTATGATTTTCAATTCACT+AGG - chr1_1:66335594-66335613 None:intergenic 25.0%
!!! CTTTTTTTTTTTGAAGGGAA+AGG + chr1_1:66335801-66335820 Msa0037330:intron 25.0%
!!! ATAATTTGCTTAGTGATAGA+AGG - chr1_1:66336138-66336157 None:intergenic 25.0%
! AAATAAATGGAAGATATTGC+CGG - chr1_1:66336448-66336467 None:intergenic 25.0%
GGAAAAAGTAGAATGAATTG+TGG - chr1_1:66333248-66333267 None:intergenic 30.0%
!!! TACTTTTTCCTACCTCAAAA+AGG + chr1_1:66333258-66333277 Msa0037330:five_prime_UTR 30.0%
!! ACTTTTTCCTACCTCAAAAA+GGG + chr1_1:66333259-66333278 Msa0037330:five_prime_UTR 30.0%
!! TCAAATCGTTTTTCATCATC+TGG + chr1_1:66333293-66333312 Msa0037330:five_prime_UTR 30.0%
!! CAAATCGTTTTTCATCATCT+GGG + chr1_1:66333294-66333313 Msa0037330:five_prime_UTR 30.0%
!! AAATCGTTTTTCATCATCTG+GGG + chr1_1:66333295-66333314 Msa0037330:five_prime_UTR 30.0%
ATCAAAATCATTAAGGCTGT+TGG - chr1_1:66333575-66333594 None:intergenic 30.0%
!!! ACTTGCTGCTTTTGATTTTT+TGG + chr1_1:66333661-66333680 Msa0037330:five_prime_UTR 30.0%
!!! CTTGCTGCTTTTGATTTTTT+GGG + chr1_1:66333662-66333681 Msa0037330:five_prime_UTR 30.0%
!!! TGCTTTTGATTTTTTGGGTT+GGG + chr1_1:66333667-66333686 Msa0037330:five_prime_UTR 30.0%
!! TATATAATGGTTTTCTGGGA+AGG + chr1_1:66333742-66333761 Msa0037330:exon 30.0%
TTCCTTCTTTAGATAACTAC+CGG + chr1_1:66333842-66333861 Msa0037330:CDS 30.0%
GTGTGAACAACTATTATTAC+TGG - chr1_1:66334009-66334028 None:intergenic 30.0%
AAGTAGAAACTAGACTTAGA+TGG + chr1_1:66334186-66334205 Msa0037330:intron 30.0%
AAGACTTGGATTATGTAGTA+AGG + chr1_1:66334216-66334235 Msa0037330:intron 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG - chr1_1:66334290-66334309 None:intergenic 30.0%
TGTTGTTGTCTCTATTTAGT+TGG + chr1_1:66334402-66334421 Msa0037330:intron 30.0%
TGTACTCTGTTAAAGCTAAA+CGG + chr1_1:66334601-66334620 Msa0037330:intron 30.0%
CATAAAATAGAGTTCCAACT+TGG - chr1_1:66334763-66334782 None:intergenic 30.0%
TAAAGTGAACATAACTTCAG+GGG - chr1_1:66334794-66334813 None:intergenic 30.0%
CTAAAGTGAACATAACTTCA+GGG - chr1_1:66334795-66334814 None:intergenic 30.0%
GATAGGAAACTCTTCTTAAA+TGG + chr1_1:66334899-66334918 Msa0037330:intron 30.0%
! TGTTCTAATTGAAGCCATTT+TGG - chr1_1:66334935-66334954 None:intergenic 30.0%
! CTACTAAAATGGTTGTTTCA+AGG - chr1_1:66334991-66335010 None:intergenic 30.0%
TCAAATATTAACAGGTGTAG+AGG + chr1_1:66335043-66335062 Msa0037330:intron 30.0%
CAAATATTAACAGGTGTAGA+GGG + chr1_1:66335044-66335063 Msa0037330:intron 30.0%
TTCATTTCCAACAAAGTTCA+AGG - chr1_1:66335234-66335253 None:intergenic 30.0%
ACAAAACATGTCATGTAAAC+AGG + chr1_1:66335320-66335339 Msa0037330:intron 30.0%
TATATCTAGAGGGAAATTCA+GGG - chr1_1:66335410-66335429 None:intergenic 30.0%
TTATATCTAGAGGGAAATTC+AGG - chr1_1:66335411-66335430 None:intergenic 30.0%
GACTTCTGAATTATATCTAG+AGG - chr1_1:66335421-66335440 None:intergenic 30.0%
TAGATATAATTCAGAAGTCC+TGG + chr1_1:66335422-66335441 Msa0037330:intron 30.0%
AGCAGTTATATTAATAGTCC+TGG + chr1_1:66335614-66335633 Msa0037330:intron 30.0%
!! AATTCAGTTTTATGTCTGGT+TGG + chr1_1:66335907-66335926 Msa0037330:intron 30.0%
TAACATATCTAACATGTGCT+TGG + chr1_1:66336060-66336079 Msa0037330:intron 30.0%
CATTATTGCAATGTTTGTGA+TGG + chr1_1:66336164-66336183 Msa0037330:CDS 30.0%
AGCAAAGCAGAAGAATATAA+CGG - chr1_1:66336385-66336404 None:intergenic 30.0%
AATAAATGGAAGATATTGCC+GGG - chr1_1:66336447-66336466 None:intergenic 30.0%
ACATTCATCATCAACTACAA+GGG + chr1_1:66336493-66336512 Msa0037330:CDS 30.0%
! CAAGAATTTTATCCCATATG+GGG - chr1_1:66336548-66336567 None:intergenic 30.0%
! CCAAGAATTTTATCCCATAT+GGG - chr1_1:66336549-66336568 None:intergenic 30.0%
CCATATGGGATAAAATTCTT+GGG + chr1_1:66336547-66336566 Msa0037330:CDS 30.0%
!!! GTTATGGCAAATTTTTTCGA+TGG + chr1_1:66336651-66336670 Msa0037330:three_prime_UTR 30.0%
ATCATCATCTTTGTTACAGT+AGG + chr1_1:66336755-66336774 Msa0037330:three_prime_UTR 30.0%
! AGAATGAGAAACCCTTTTTG+AGG - chr1_1:66333273-66333292 None:intergenic 35.0%
AAGAAACCCAGAAGAGAATA+TGG - chr1_1:66333333-66333352 None:intergenic 35.0%
!! TTTCCTTTTCAGGGTTTTGA+AGG + chr1_1:66333597-66333616 Msa0037330:intron 35.0%
!!! CTGCTTTTGATTTTTTGGGT+TGG + chr1_1:66333666-66333685 Msa0037330:five_prime_UTR 35.0%
!!! TTTGATTTTTTGGGTTGGGT+TGG + chr1_1:66333671-66333690 Msa0037330:five_prime_UTR 35.0%
!!! TTGATTTTTTGGGTTGGGTT+GGG + chr1_1:66333672-66333691 Msa0037330:five_prime_UTR 35.0%
ATATGTGAGTGATGAAGTGA+TGG + chr1_1:66333765-66333784 Msa0037330:CDS 35.0%
TATGTGAGTGATGAAGTGAT+GGG + chr1_1:66333766-66333785 Msa0037330:CDS 35.0%
TTGCTCCTATTGTGGTTTAT+TGG + chr1_1:66333794-66333813 Msa0037330:CDS 35.0%
GTGGTTTATTGGATATATGC+TGG + chr1_1:66333805-66333824 Msa0037330:CDS 35.0%
AACCGGTAGTTATCTAAAGA+AGG - chr1_1:66333847-66333866 None:intergenic 35.0%
! CCTTTCACAACTGCTTTAAA+GGG - chr1_1:66333907-66333926 None:intergenic 35.0%
ACCTTTCACAACTGCTTTAA+AGG - chr1_1:66333908-66333927 None:intergenic 35.0%
GGATCTAGAGATTAATGAGT+TGG + chr1_1:66334319-66334338 Msa0037330:intron 35.0%
! TAATGAGTTGGAGAAAGACA+TGG + chr1_1:66334331-66334350 Msa0037330:intron 35.0%
TAAAGCAACACCAAGAATTG+GGG - chr1_1:66334432-66334451 None:intergenic 35.0%
GTAAAGCAACACCAAGAATT+GGG - chr1_1:66334433-66334452 None:intergenic 35.0%
AGTAAAGCAACACCAAGAAT+TGG - chr1_1:66334434-66334453 None:intergenic 35.0%
! CTACTCTTAGCTCTCAATTT+GGG - chr1_1:66334468-66334487 None:intergenic 35.0%
! ACTACTCTTAGCTCTCAATT+TGG - chr1_1:66334469-66334488 None:intergenic 35.0%
AGCTAAGAGTAGTAGATAAG+AGG + chr1_1:66334476-66334495 Msa0037330:intron 35.0%
!! GTTGCTTTCTCATGTTTTGA+CGG + chr1_1:66334563-66334582 Msa0037330:intron 35.0%
!! TTTTGACGGACACAATGTTT+TGG + chr1_1:66334577-66334596 Msa0037330:intron 35.0%
!! TTTGACGGACACAATGTTTT+GGG + chr1_1:66334578-66334597 Msa0037330:intron 35.0%
CAAGTTTATTGTTGGGACTT+GGG - chr1_1:66334700-66334719 None:intergenic 35.0%
ACAAGTTTATTGTTGGGACT+TGG - chr1_1:66334701-66334720 None:intergenic 35.0%
GAGTTATGCAAATGGAAAAC+GGG - chr1_1:66334741-66334760 None:intergenic 35.0%
GGAGTTATGCAAATGGAAAA+CGG - chr1_1:66334742-66334761 None:intergenic 35.0%
CCTAAAGTGAACATAACTTC+AGG - chr1_1:66334796-66334815 None:intergenic 35.0%
CCTGAAGTTATGTTCACTTT+AGG + chr1_1:66334793-66334812 Msa0037330:intron 35.0%
TATTACTATTAGGAGTTGGG+AGG + chr1_1:66334873-66334892 Msa0037330:intron 35.0%
TATATGCAAAGAGATTGGAC+AGG - chr1_1:66334960-66334979 None:intergenic 35.0%
!! TCTTTGGAGCTCTACTAAAA+TGG - chr1_1:66335002-66335021 None:intergenic 35.0%
TGCAACACTACCATAAAGTA+TGG + chr1_1:66335092-66335111 Msa0037330:intron 35.0%
GCAACACTACCATAAAGTAT+GGG + chr1_1:66335093-66335112 Msa0037330:intron 35.0%
!! ATTCAGCGTGTTTTTGAACT+TGG + chr1_1:66335117-66335136 Msa0037330:intron 35.0%
ACAAAGTTCAAGGATAACCA+CGG - chr1_1:66335224-66335243 None:intergenic 35.0%
TGGTTATCCTTGAACTTTGT+TGG + chr1_1:66335224-66335243 Msa0037330:intron 35.0%
ATCTATATCTGTGTCAGTTG+AGG + chr1_1:66335477-66335496 Msa0037330:intron 35.0%
TTAAAACGCGAAACTGTGTT+TGG + chr1_1:66335520-66335539 Msa0037330:intron 35.0%
TTGTGCCTCTTAATTGGAAA+AGG - chr1_1:66335571-66335590 None:intergenic 35.0%
CAGCAAGAGAATATATCTAC+AGG - chr1_1:66335728-66335747 None:intergenic 35.0%
ATACTAATGGCATGTGTTTG+AGG + chr1_1:66335872-66335891 Msa0037330:intron 35.0%
TACTAATGGCATGTGTTTGA+GGG + chr1_1:66335873-66335892 Msa0037330:intron 35.0%
!! AGGGAATTCAGTTTTATGTC+TGG + chr1_1:66335903-66335922 Msa0037330:intron 35.0%
!! AGTTTTATGTCTGGTTGGTT+GGG + chr1_1:66335912-66335931 Msa0037330:intron 35.0%
AATACAATAACCCAACCTCT+TGG - chr1_1:66335958-66335977 None:intergenic 35.0%
AGAATAACATTCTGCAGAGT+TGG - chr1_1:66335998-66336017 None:intergenic 35.0%
!! CAATGTTTGTGATGGATACA+TGG + chr1_1:66336172-66336191 Msa0037330:CDS 35.0%
CTCAATAGGGTGATTGTAAA+GGG - chr1_1:66336295-66336314 None:intergenic 35.0%
CTTTACAATCACCCTATTGA+GGG + chr1_1:66336294-66336313 Msa0037330:CDS 35.0%
GACATTCATCATCAACTACA+AGG + chr1_1:66336492-66336511 Msa0037330:CDS 35.0%
CCCATATGGGATAAAATTCT+TGG + chr1_1:66336546-66336565 Msa0037330:CDS 35.0%
! CCCAAGAATTTTATCCCATA+TGG - chr1_1:66336550-66336569 None:intergenic 35.0%
ACATTTAACTAGTCCTTTGC+AGG - chr1_1:66336627-66336646 None:intergenic 35.0%
!!! AATTTTTTCGATGGAACCAG+AGG + chr1_1:66336660-66336679 Msa0037330:three_prime_UTR 35.0%
ATTGTTATGCTACACAAGGT+GGG - chr1_1:66336790-66336809 None:intergenic 35.0%
CATCATTGTTATGCTACACA+AGG - chr1_1:66336794-66336813 None:intergenic 35.0%
TGTGTAGCATAACAATGATG+TGG + chr1_1:66336794-66336813 Msa0037330:three_prime_UTR 35.0%
TTTCTCCCTCAAACGTGTTT+GGG - chr1_1:66333071-66333090 None:intergenic 40.0%
GTTTGAGGGAGAAAGAAAGA+AGG + chr1_1:66333077-66333096 Msa0037330:five_prime_UTR 40.0%
GGAGAAAGAAAGAAGGTTCA+CGG + chr1_1:66333084-66333103 Msa0037330:five_prime_UTR 40.0%
GAGAAAGAAAGAAGGTTCAC+GGG + chr1_1:66333085-66333104 Msa0037330:five_prime_UTR 40.0%
! ACGGGAGTGTGTAATAGTTT+AGG + chr1_1:66333103-66333122 Msa0037330:five_prime_UTR 40.0%
! CGGGAGTGTGTAATAGTTTA+GGG + chr1_1:66333104-66333123 Msa0037330:five_prime_UTR 40.0%
ATTGTGGATCAGATCTAGCT+GGG - chr1_1:66333232-66333251 None:intergenic 40.0%
AATTGTGGATCAGATCTAGC+TGG - chr1_1:66333233-66333252 None:intergenic 40.0%
!!! TGAGAAACCCTTTTTGAGGT+AGG - chr1_1:66333269-66333288 None:intergenic 40.0%
!! TTTAGGTTGTGGGAACTATG+TGG + chr1_1:66333445-66333464 Msa0037330:intron 40.0%
GTTCCTTCAAAACCCTGAAA+AGG - chr1_1:66333603-66333622 None:intergenic 40.0%
ATGTGAGTGATGAAGTGATG+GGG + chr1_1:66333767-66333786 Msa0037330:CDS 40.0%
!! CCCTTTAAAGCAGTTGTGAA+AGG + chr1_1:66333904-66333923 Msa0037330:CDS 40.0%
TAGATGGTAGAGAGAAGACT+TGG + chr1_1:66334202-66334221 Msa0037330:intron 40.0%
GAGTCAAATCACAAGAGGTA+GGG + chr1_1:66334259-66334278 Msa0037330:intron 40.0%
!!! AGTTGGTTTTCCCCAATTCT+TGG + chr1_1:66334419-66334438 Msa0037330:intron 40.0%
CTGTGACTCTTCTAACTGTA+TGG + chr1_1:66334501-66334520 Msa0037330:intron 40.0%
CCAACTTGGAGTTATGCAAA+TGG - chr1_1:66334749-66334768 None:intergenic 40.0%
CCATTTGCATAACTCCAAGT+TGG + chr1_1:66334746-66334765 Msa0037330:intron 40.0%
TGAACATAACTTCAGGGGAA+TGG - chr1_1:66334789-66334808 None:intergenic 40.0%
! ATGGTAGAAGCATGCCAAAA+TGG + chr1_1:66334918-66334937 Msa0037330:intron 40.0%
CGCTGAATTCCCATACTTTA+TGG - chr1_1:66335105-66335124 None:intergenic 40.0%
TTAGTTAATGCTGGATTCCG+TGG + chr1_1:66335204-66335223 Msa0037330:intron 40.0%
AATAGATCGACCTTGTTCAC+TGG - chr1_1:66335359-66335378 None:intergenic 40.0%
TTGACAACTGCTTAACACAC+AGG - chr1_1:66335458-66335477 None:intergenic 40.0%
CCTCTTAATTGGAAAAGGTC+AGG - chr1_1:66335566-66335585 None:intergenic 40.0%
! CCTGACCTTTTCCAATTAAG+AGG + chr1_1:66335563-66335582 Msa0037330:intron 40.0%
ACTAGGTTGTGCCTCTTAAT+TGG - chr1_1:66335577-66335596 None:intergenic 40.0%
ACTAATGGCATGTGTTTGAG+GGG + chr1_1:66335874-66335893 Msa0037330:intron 40.0%
!! CAGTTTTATGTCTGGTTGGT+TGG + chr1_1:66335911-66335930 Msa0037330:intron 40.0%
CTCTCTAATTCCAAGAGGTT+GGG + chr1_1:66335945-66335964 Msa0037330:intron 40.0%
ACGACAACATCAAATGCATC+AGG + chr1_1:66336099-66336118 Msa0037330:CDS 40.0%
CGACAACATCAAATGCATCA+GGG + chr1_1:66336100-66336119 Msa0037330:CDS 40.0%
GACAACATCAAATGCATCAG+GGG + chr1_1:66336101-66336120 Msa0037330:CDS 40.0%
AACAACCAGTCTATGATGCT+GGG - chr1_1:66336256-66336275 None:intergenic 40.0%
CTGGTTGTTCCTTATGCAAT+AGG + chr1_1:66336267-66336286 Msa0037330:CDS 40.0%
TAAAGGGCTCCTATTGCATA+AGG - chr1_1:66336279-66336298 None:intergenic 40.0%
CCTCAATAGGGTGATTGTAA+AGG - chr1_1:66336296-66336315 None:intergenic 40.0%
CCTTTACAATCACCCTATTG+AGG + chr1_1:66336293-66336312 Msa0037330:CDS 40.0%
CAAGTAGAAGACCCTCAATA+GGG - chr1_1:66336308-66336327 None:intergenic 40.0%
TCAAGTAGAAGACCCTCAAT+AGG - chr1_1:66336309-66336328 None:intergenic 40.0%
! CCATCTCGTTTCTTGTTTCA+GGG + chr1_1:66336343-66336362 Msa0037330:CDS 40.0%
! CATGATACGCAGTGTTATTC+TGG - chr1_1:66336473-66336492 None:intergenic 40.0%
TTATCCCATATGGGGAAGAA+CGG - chr1_1:66336540-66336559 None:intergenic 40.0%
GCTCGCTTTACAAGATTGAA+AGG - chr1_1:66336582-66336601 None:intergenic 40.0%
!!! CGGACATTTTTCGAGTTGAT+TGG + chr1_1:66336691-66336710 Msa0037330:three_prime_UTR 40.0%
CATTGTTATGCTACACAAGG+TGG - chr1_1:66336791-66336810 None:intergenic 40.0%
GTAGCATAACAATGATGTGG+TGG + chr1_1:66336797-66336816 Msa0037330:three_prime_UTR 40.0%
! TACAACTTTAAGTTCGAGCG+TGG + chr1_1:66336949-66336968 Msa0037330:three_prime_UTR 40.0%
GGGCTAAAGTTTCTAATGCA+TGG - chr1_1:66336989-66337008 None:intergenic 40.0%
TTGTCTCCCAAACACGTTTG+AGG + chr1_1:66333062-66333081 Msa0037330:five_prime_UTR 45.0%
TGTCTCCCAAACACGTTTGA+GGG + chr1_1:66333063-66333082 Msa0037330:five_prime_UTR 45.0%
CTTTCTCCCTCAAACGTGTT+TGG - chr1_1:66333072-66333091 None:intergenic 45.0%
TGGGGCAAATGGATAAACAG+TGG - chr1_1:66333213-66333232 None:intergenic 45.0%
TTGTGGATCAGATCTAGCTG+GGG - chr1_1:66333231-66333250 None:intergenic 45.0%
!!! TTTTTTGGGTTGGGTTGGGT+TGG + chr1_1:66333676-66333695 Msa0037330:five_prime_UTR 45.0%
!!! TTTTTGGGTTGGGTTGGGTT+GGG + chr1_1:66333677-66333696 Msa0037330:five_prime_UTR 45.0%
CATCTCTCGTAGTATGCAAC+CGG - chr1_1:66333864-66333883 None:intergenic 45.0%
! TTTGCTTCAGCAGCTTGTTC+AGG + chr1_1:66333930-66333949 Msa0037330:CDS 45.0%
GGCAATTGTTGCACTCATCT+TGG + chr1_1:66333951-66333970 Msa0037330:CDS 45.0%
AAGGAGAGTAGATCAGACGA+AGG + chr1_1:66334235-66334254 Msa0037330:intron 45.0%
AGGAGAGTAGATCAGACGAA+GGG + chr1_1:66334236-66334255 Msa0037330:intron 45.0%
AAGGGGAGTCAAATCACAAG+AGG + chr1_1:66334254-66334273 Msa0037330:intron 45.0%
GGAGTCAAATCACAAGAGGT+AGG + chr1_1:66334258-66334277 Msa0037330:intron 45.0%
GTTTATTGTTGGGACTTGGG+AGG - chr1_1:66334697-66334716 None:intergenic 45.0%
TTGATCCAGTCCAGTGAACA+AGG + chr1_1:66335346-66335365 Msa0037330:intron 45.0%
CTAGGCTCTCTAATTCCAAG+AGG + chr1_1:66335940-66335959 Msa0037330:intron 45.0%
GCTCTCTAATTCCAAGAGGT+TGG + chr1_1:66335944-66335963 Msa0037330:intron 45.0%
CATGGCAGTACTTTGTGCAT+CGG + chr1_1:66336190-66336209 Msa0037330:CDS 45.0%
TATGATGCTGGGAGTGGATA+TGG - chr1_1:66336245-66336264 None:intergenic 45.0%
GAACAACCAGTCTATGATGC+TGG - chr1_1:66336257-66336276 None:intergenic 45.0%
GGTCTTCTACTTGACACTGT+TGG + chr1_1:66336315-66336334 Msa0037330:CDS 45.0%
CTTCTACTTGACACTGTTGG+TGG + chr1_1:66336318-66336337 Msa0037330:CDS 45.0%
! GCCATCTCGTTTCTTGTTTC+AGG + chr1_1:66336342-66336361 Msa0037330:CDS 45.0%
CCCTGAAACAAGAAACGAGA+TGG - chr1_1:66336346-66336365 None:intergenic 45.0%
AAAACTGTTGACGACCACTG+TGG + chr1_1:66336411-66336430 Msa0037330:CDS 45.0%
AATCTTGTAAAGCGAGCCGA+AGG + chr1_1:66336585-66336604 Msa0037330:CDS 45.0%
ATCTTGTAAAGCGAGCCGAA+GGG + chr1_1:66336586-66336605 Msa0037330:CDS 45.0%
!! TCGAGTTGATTGGAGCTTGT+AGG + chr1_1:66336701-66336720 Msa0037330:three_prime_UTR 45.0%
!! CGAGTTGATTGGAGCTTGTA+GGG + chr1_1:66336702-66336721 Msa0037330:three_prime_UTR 45.0%
! GAGTTGATTGGAGCTTGTAG+GGG + chr1_1:66336703-66336722 Msa0037330:three_prime_UTR 45.0%
!! GGAGCTTGTAGGGGTTTTAT+TGG + chr1_1:66336712-66336731 Msa0037330:three_prime_UTR 45.0%
!!! GCTTGTAGGGGTTTTATTGG+TGG + chr1_1:66336715-66336734 Msa0037330:three_prime_UTR 45.0%
!!! TAGGGGTTTTATTGGTGGCT+TGG + chr1_1:66336720-66336739 Msa0037330:three_prime_UTR 45.0%
TTATGCTACACAAGGTGGGT+TGG - chr1_1:66336786-66336805 None:intergenic 45.0%
!! TATTATTAAATAAATACTAA+TGG + chr1_1:66335859-66335878 Msa0037330:intron 5.0%
TCAGATCTAGCTGGGGCAAA+TGG - chr1_1:66333224-66333243 None:intergenic 50.0%
GGTTGTGGGAACTATGTGGT+TGG + chr1_1:66333449-66333468 Msa0037330:intron 50.0%
! GGGGACTTTTGCTCCTATTG+TGG + chr1_1:66333786-66333805 Msa0037330:CDS 50.0%
GGAGAGTAGATCAGACGAAG+GGG + chr1_1:66334237-66334256 Msa0037330:intron 50.0%
ACAAGAGGTAGGGAAAGACC+TGG + chr1_1:66334269-66334288 Msa0037330:intron 50.0%
! AAGCCTTATCCCACTAAGCG+GGG - chr1_1:66334379-66334398 None:intergenic 50.0%
! CAAGCCTTATCCCACTAAGC+GGG - chr1_1:66334380-66334399 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+CGG - chr1_1:66334381-66334400 None:intergenic 50.0%
TAGGAGTTGGGAGGCAAGAT+AGG + chr1_1:66334882-66334901 Msa0037330:intron 50.0%
! AGAGATCATGTCGCACTGGT+TGG - chr1_1:66335279-66335298 None:intergenic 50.0%
GTCAAGAGATCATGTCGCAC+TGG - chr1_1:66335283-66335302 None:intergenic 50.0%
ATCGACCTTGTTCACTGGAC+TGG - chr1_1:66335354-66335373 None:intergenic 50.0%
CACACAGGCGACAAAAATCC+AGG - chr1_1:66335443-66335462 None:intergenic 50.0%
CAGTGCTAGAAGCAGTAACC+AGG - chr1_1:66335635-66335654 None:intergenic 50.0%
TGGCATGTGTTTGAGGGGAA+AGG + chr1_1:66335879-66335898 Msa0037330:intron 50.0%
GGCATGTGTTTGAGGGGAAA+GGG + chr1_1:66335880-66335899 Msa0037330:intron 50.0%
ATGTGTTTGAGGGGAAAGGG+AGG + chr1_1:66335883-66335902 Msa0037330:intron 50.0%
TGTGTTTGAGGGGAAAGGGA+GGG + chr1_1:66335884-66335903 Msa0037330:intron 50.0%
TCAGCCGTTCTTCCCCATAT+GGG + chr1_1:66336533-66336552 Msa0037330:CDS 50.0%
TCTTGTAAAGCGAGCCGAAG+GGG + chr1_1:66336587-66336606 Msa0037330:CDS 50.0%
!!! TTTTGAGGCAAGGCCTGCAA+AGG + chr1_1:66336611-66336630 Msa0037330:CDS 50.0%
TGGAACCAGAGGCTTAACTG+CGG + chr1_1:66336671-66336690 Msa0037330:three_prime_UTR 50.0%
AATGTCCGCAGTTAAGCCTC+TGG - chr1_1:66336679-66336698 None:intergenic 50.0%
ATGTAGCCAACCCCGCTTAG+TGG + chr1_1:66334366-66334385 Msa0037330:intron 55.0%
TGTAGCCAACCCCGCTTAGT+GGG + chr1_1:66334367-66334386 Msa0037330:intron 55.0%
CTTATCCCACTAAGCGGGGT+TGG - chr1_1:66334375-66334394 None:intergenic 55.0%
CAACCCCGCTTAGTGGGATA+AGG + chr1_1:66334373-66334392 Msa0037330:intron 55.0%
CCGCTTAGTGGGATAAGGCT+TGG + chr1_1:66334378-66334397 Msa0037330:intron 55.0%
! CTGGTTGGTTGGGAGAGACT+AGG + chr1_1:66335922-66335941 Msa0037330:intron 55.0%
GATGCTGGGAGTGGATATGG+CGG - chr1_1:66336242-66336261 None:intergenic 55.0%
CCAGTCTATGATGCTGGGAG+TGG - chr1_1:66336251-66336270 None:intergenic 55.0%
CCACTCCCAGCATCATAGAC+TGG + chr1_1:66336248-66336267 Msa0037330:CDS 55.0%
TTGACGACCACTGTGGTCTG+TGG + chr1_1:66336418-66336437 Msa0037330:CDS 55.0%
CACTGTGGTCTGTGGTTACC+CGG + chr1_1:66336426-66336445 Msa0037330:CDS 55.0%
CTCAGCCGTTCTTCCCCATA+TGG + chr1_1:66336532-66336551 Msa0037330:CDS 55.0%
CTTGTAAAGCGAGCCGAAGG+GGG + chr1_1:66336588-66336607 Msa0037330:CDS 55.0%
CCTTGCCTCAAAACCCCCTT+CGG - chr1_1:66336604-66336623 None:intergenic 55.0%
CGGGTAACCACAGACCACAG+TGG - chr1_1:66336428-66336447 None:intergenic 60.0%
!!! CCGAAGGGGGTTTTGAGGCA+AGG + chr1_1:66336601-66336620 Msa0037330:CDS 60.0%
! GCGAGCCGAAGGGGGTTTTG+AGG + chr1_1:66336596-66336615 Msa0037330:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66333061 66337019 66333061 ID=Msa0037330;Name=Msa0037330
chr1_1 mRNA 66333061 66337019 66333061 ID=Msa0037330-mRNA-1;Parent=Msa0037330;Name=Msa0037330-mRNA-1;_AED=0.03;_eAED=0.03;_QI=395|1|1|1|0.5|0.33|3|381|255
chr1_1 exon 66333061 66333316 66333061 ID=Msa0037330-mRNA-1:exon:21406;Parent=Msa0037330-mRNA-1
chr1_1 exon 66333609 66333972 66333609 ID=Msa0037330-mRNA-1:exon:21407;Parent=Msa0037330-mRNA-1
chr1_1 exon 66336096 66337019 66336096 ID=Msa0037330-mRNA-1:exon:21408;Parent=Msa0037330-mRNA-1
chr1_1 five_prime_UTR 66333061 66333316 66333061 ID=Msa0037330-mRNA-1:five_prime_utr;Parent=Msa0037330-mRNA-1
chr1_1 five_prime_UTR 66333609 66333747 66333609 ID=Msa0037330-mRNA-1:five_prime_utr;Parent=Msa0037330-mRNA-1
chr1_1 CDS 66333748 66333972 66333748 ID=Msa0037330-mRNA-1:cds;Parent=Msa0037330-mRNA-1
chr1_1 CDS 66336096 66336638 66336096 ID=Msa0037330-mRNA-1:cds;Parent=Msa0037330-mRNA-1
chr1_1 three_prime_UTR 66336639 66337019 66336639 ID=Msa0037330-mRNA-1:three_prime_utr;Parent=Msa0037330-mRNA-1
Gene Sequence

>Msa0037330

ATGGTTTTCTGGGAAGGATATGTGAGTGATGAAGTGATGGGGACTTTTGCTCCTATTGTGGTTTATTGGATATATGCTGGATTTTATCAATTGCTTCCTTCTTTAGATAACTACCGGTTGCATACTACGAGAGATGAAGAAAAGAAGAATTTGGTGCCCTTTAAAGCAGTTGTGAAAGGTGTTTTGCTTCAGCAGCTTGTTCAGGCAATTGTTGCACTCATCTTGTTGACGACAACATCAAATGCATCAGGGGTTACAGTGCAGCCTTCTATCACTAAGCAAATTATTCAGATCATTATTGCAATGTTTGTGATGGATACATGGCAGTACTTTGTGCATCGGTACATGCATCAGAACAAGTTTTTATACCGCCATATCCACTCCCAGCATCATAGACTGGTTGTTCCTTATGCAATAGGAGCCCTTTACAATCACCCTATTGAGGGTCTTCTACTTGACACTGTTGGTGGAGCCATCTCGTTTCTTGTTTCAGGGATGACTGCGAGAACAGCCGTTATATTCTTCTGCTTTGCTGTTGTGAAAACTGTTGACGACCACTGTGGTCTGTGGTTACCCGGCAATATCTTCCATTTATTTTTCCAGAATAACACTGCGTATCATGACATTCATCATCAACTACAAGGGCTGAAATACAATTATTCTCAGCCGTTCTTCCCCATATGGGATAAAATTCTTGGGACACACATGCCTTTCAATCTTGTAAAGCGAGCCGAAGGGGGTTTTGAGGCAAGGCCTGCAAAGGACTAG
Protein sequence

>Msa0037330

MVFWEGYVSDEVMGTFAPIVVYWIYAGFYQLLPSLDNYRLHTTRDEEKKNLVPFKAVVKGVLLQQLVQAIVALILLTTTSNASGVTVQPSITKQIIQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPIEGLLLDTVGGAISFLVSGMTARTAVIFFCFAVVKTVDDHCGLWLPGNIFHLFFQNNTAYHDIHHQLQGLKYNYSQPFFPIWDKILGTHMPFNLVKRAEGGFEARPAKD*