AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178050 MtrunA17_Chr1g0201031 98.824 255 3 0 1 255 1 255 0.0 525
Msa0178050 MtrunA17_Chr5g0416951 66.800 250 80 2 8 254 9 258 8.33e-129 365
Msa0178050 MtrunA17_Chr1g0201041 95.455 132 6 0 75 206 1 132 9.88e-84 246
Msa0178050 MtrunA17_Chr8g0364601 33.333 177 100 8 89 255 103 271 1.10e-15 74.7
Msa0178050 MtrunA17_Chr5g0414141 34.783 161 90 7 89 242 103 255 4.98e-15 72.8
Msa0178050 MtrunA17_Chr6g0466381 28.500 200 122 8 35 224 50 238 1.77e-13 68.2
Msa0178050 MtrunA17_Chr6g0465561 34.266 143 80 6 89 224 103 238 4.39e-13 67.0
Msa0178050 MtrunA17_Chr4g0056801 30.189 159 102 4 89 243 121 274 9.56e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178050 AT1G14290.1 67.871 249 78 2 8 254 6 254 1.75e-128 364
Msa0178050 AT1G69640.1 67.600 250 79 2 8 255 7 256 2.06e-119 342
Msa0178050 AT1G14290.2 70.000 180 53 1 76 254 1 180 8.78e-96 279
Msa0178050 AT2G29390.6 32.919 161 93 7 89 242 20 172 4.21e-13 66.2
Msa0178050 AT2G29390.4 32.919 161 93 7 89 242 20 172 4.21e-13 66.2
Msa0178050 AT2G29390.5 32.919 161 93 7 89 242 62 214 1.18e-12 65.9
Msa0178050 AT2G29390.2 32.919 161 93 7 89 242 103 255 1.59e-12 65.9
Msa0178050 AT2G29390.3 32.919 161 93 7 89 242 96 248 2.08e-12 65.5
Msa0178050 AT2G29390.1 31.579 171 94 7 89 242 103 267 4.91e-12 64.7
Msa0178050 AT1G07420.2 31.447 159 98 6 89 242 65 217 6.90e-12 63.9
Msa0178050 AT1G07420.1 31.447 159 98 6 89 242 103 255 7.92e-12 63.9

Find 97 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCTCGTTTCTTGTTTC+AGG 0.088504 1_4:+65417315 Msa0178050:CDS
AAATTGAATTATTGGGTAAT+TGG 0.113537 1_4:-65414110 None:intergenic
ACCTTTCACAACTGCTTTAA+AGG 0.133433 1_4:-65414878 None:intergenic
TTATATCAAAATTGAATTAT+TGG 0.182968 1_4:-65414118 None:intergenic
CTTTCTCCCTCAAACGTGTT+TGG 0.222136 1_4:-65414042 None:intergenic
CCCATATGGGATAAAATTCT+TGG 0.251647 1_4:+65417519 Msa0178050:CDS
TTGCTCCTATTGTGGTTTAT+TGG 0.252719 1_4:+65414767 Msa0178050:CDS
CGGGAGTGTGTAATAGTTTA+GGG 0.264391 1_4:+65414077 Msa0178050:five_prime_UTR
CATGATACGCAGTGTTATTC+TGG 0.264396 1_4:-65417443 None:intergenic
TATATCAAAATTGAATTATT+GGG 0.271986 1_4:-65414117 None:intergenic
ACGGGAGTGTGTAATAGTTT+AGG 0.279188 1_4:+65414076 Msa0178050:five_prime_UTR
AATTGAATTATTGGGTAATT+GGG 0.298393 1_4:-65414109 None:intergenic
TTTCTCCCTCAAACGTGTTT+GGG 0.303636 1_4:-65414041 None:intergenic
ACTCAAATAGTTTCAGATTA+GGG 0.309648 1_4:-65417979 None:intergenic
ACATTTAACTAGTCCTTTGC+AGG 0.314305 1_4:-65417597 None:intergenic
AGATGAAGAAAAGAAGAATT+TGG 0.338961 1_4:+65414852 Msa0178050:CDS
CTGGTTGTTCCTTATGCAAT+AGG 0.347826 1_4:+65417240 Msa0178050:CDS
CTCAGCCGTTCTTCCCCATA+TGG 0.348493 1_4:+65417505 Msa0178050:CDS
CACTCAAATAGTTTCAGATT+AGG 0.349824 1_4:-65417980 None:intergenic
TTTGCTTCAGCAGCTTGTTC+AGG 0.364001 1_4:+65414903 Msa0178050:CDS
ATAATTTGCTTAGTGATAGA+AGG 0.372759 1_4:-65417108 None:intergenic
CCATCTCGTTTCTTGTTTCA+GGG 0.376474 1_4:+65417316 Msa0178050:CDS
CGAGTTGATTGGAGCTTGTA+GGG 0.380020 1_4:+65417675 Msa0178050:three_prime_UTR
TATGATGCTGGGAGTGGATA+TGG 0.383976 1_4:-65417215 None:intergenic
TCGAGTTGATTGGAGCTTGT+AGG 0.392106 1_4:+65417674 Msa0178050:three_prime_UTR
GGCAATTGTTGCACTCATCT+TGG 0.392694 1_4:+65414924 Msa0178050:CDS
TATATCCAATAAACCACAAT+AGG 0.395149 1_4:-65414772 None:intergenic
CCTTTCACAACTGCTTTAAA+GGG 0.396867 1_4:-65414877 None:intergenic
CTAGTTAAATGTAATTGTTA+TGG 0.403282 1_4:+65417608 Msa0178050:exon
TCAAGTAGAAGACCCTCAAT+AGG 0.417783 1_4:-65417279 None:intergenic
TCAGATCTAGCTGGGGCAAA+TGG 0.419591 1_4:-65414194 None:intergenic
CACTGTGGTCTGTGGTTACC+CGG 0.436357 1_4:+65417399 Msa0178050:CDS
AAATAAATGGAAGATATTGC+CGG 0.443740 1_4:-65417418 None:intergenic
CTCAATAGGGTGATTGTAAA+GGG 0.448695 1_4:-65417265 None:intergenic
TGTCTCCCAAACACGTTTGA+GGG 0.456899 1_4:+65414036 Msa0178050:five_prime_UTR
ACGACAACATCAAATGCATC+AGG 0.459441 1_4:+65417072 Msa0178050:CDS
GTGGTTTATTGGATATATGC+TGG 0.466288 1_4:+65414778 Msa0178050:CDS
TCAGCCGTTCTTCCCCATAT+GGG 0.471141 1_4:+65417506 Msa0178050:CDS
TAAAGGGCTCCTATTGCATA+AGG 0.471174 1_4:-65417249 None:intergenic
TTGTCTCCCAAACACGTTTG+AGG 0.475414 1_4:+65414035 Msa0178050:five_prime_UTR
CCATATGGGATAAAATTCTT+GGG 0.479913 1_4:+65417520 Msa0178050:CDS
GAACAACCAGTCTATGATGC+TGG 0.480709 1_4:-65417227 None:intergenic
CTTCTACTTGACACTGTTGG+TGG 0.482026 1_4:+65417291 Msa0178050:CDS
CCTTTACAATCACCCTATTG+AGG 0.483901 1_4:+65417266 Msa0178050:CDS
TTCCTTCTTTAGATAACTAC+CGG 0.488803 1_4:+65414815 Msa0178050:CDS
CATCTCTCGTAGTATGCAAC+CGG 0.498885 1_4:-65414834 None:intergenic
CCTCAATAGGGTGATTGTAA+AGG 0.505833 1_4:-65417266 None:intergenic
CCCTTTAAAGCAGTTGTGAA+AGG 0.507083 1_4:+65414877 Msa0178050:CDS
AATTGTGGATCAGATCTAGC+TGG 0.507556 1_4:-65414203 None:intergenic
GGAGAAAGAAAGAAGGTTCA+CGG 0.508282 1_4:+65414057 Msa0178050:five_prime_UTR
GAGAAAGAAAGAAGGTTCAC+GGG 0.509534 1_4:+65414058 Msa0178050:five_prime_UTR
CAATGTTTGTGATGGATACA+TGG 0.513406 1_4:+65417145 Msa0178050:CDS
CATTATTGCAATGTTTGTGA+TGG 0.518217 1_4:+65417137 Msa0178050:CDS
CCAGTCTATGATGCTGGGAG+TGG 0.524885 1_4:-65417221 None:intergenic
CTTTACAATCACCCTATTGA+GGG 0.525857 1_4:+65417267 Msa0178050:CDS
AATGTCCGCAGTTAAGCCTC+TGG 0.527726 1_4:-65417649 None:intergenic
GGGCTAAAGTTTCTAATGCA+TGG 0.528066 1_4:-65417959 None:intergenic
CAAGTAGAAGACCCTCAATA+GGG 0.537000 1_4:-65417278 None:intergenic
AACCGGTAGTTATCTAAAGA+AGG 0.541583 1_4:-65414817 None:intergenic
AATAAATGGAAGATATTGCC+GGG 0.546549 1_4:-65417417 None:intergenic
GCTCGCTTTACAAGATTGAA+AGG 0.546553 1_4:-65417552 None:intergenic
AATCTTGTAAAGCGAGCCGA+AGG 0.547097 1_4:+65417558 Msa0178050:CDS
AACAACCAGTCTATGATGCT+GGG 0.558768 1_4:-65417226 None:intergenic
GACATTCATCATCAACTACA+AGG 0.561633 1_4:+65417465 Msa0178050:CDS
GGTCTTCTACTTGACACTGT+TGG 0.565759 1_4:+65417288 Msa0178050:CDS
ATCATCATCTTTGTTACAGT+AGG 0.567302 1_4:+65417728 Msa0178050:three_prime_UTR
ATTGTGGATCAGATCTAGCT+GGG 0.571273 1_4:-65414202 None:intergenic
CCACTCCCAGCATCATAGAC+TGG 0.571714 1_4:+65417221 Msa0178050:CDS
TTATGCTACACAAGGTGGGT+TGG 0.579690 1_4:-65417756 None:intergenic
CATTGTTATGCTACACAAGG+TGG 0.580875 1_4:-65417761 None:intergenic
CCCTGAAACAAGAAACGAGA+TGG 0.588004 1_4:-65417316 None:intergenic
TACAACTTTAAGTTCGAGCG+TGG 0.590612 1_4:+65417922 Msa0178050:three_prime_UTR
AGCAAAGCAGAAGAATATAA+CGG 0.591784 1_4:-65417355 None:intergenic
TTATCCCATATGGGGAAGAA+CGG 0.595766 1_4:-65417510 None:intergenic
CGACAACATCAAATGCATCA+GGG 0.607921 1_4:+65417073 Msa0178050:CDS
ATATGTGAGTGATGAAGTGA+TGG 0.610503 1_4:+65414738 Msa0178050:CDS
TCTTGTAAAGCGAGCCGAAG+GGG 0.614150 1_4:+65417560 Msa0178050:CDS
GTTTGAGGGAGAAAGAAAGA+AGG 0.616320 1_4:+65414050 Msa0178050:five_prime_UTR
CATGGCAGTACTTTGTGCAT+CGG 0.619022 1_4:+65417163 Msa0178050:CDS
ATTGTTATGCTACACAAGGT+GGG 0.619972 1_4:-65417760 None:intergenic
GAGTTGATTGGAGCTTGTAG+GGG 0.626568 1_4:+65417676 Msa0178050:three_prime_UTR
TTGACGACCACTGTGGTCTG+TGG 0.626742 1_4:+65417391 Msa0178050:CDS
ATCTTGTAAAGCGAGCCGAA+GGG 0.633355 1_4:+65417559 Msa0178050:CDS
CTTGTAAAGCGAGCCGAAGG+GGG 0.644126 1_4:+65417561 Msa0178050:CDS
CATCATTGTTATGCTACACA+AGG 0.661913 1_4:-65417764 None:intergenic
GACAACATCAAATGCATCAG+GGG 0.662868 1_4:+65417074 Msa0178050:CDS
TATGTGAGTGATGAAGTGAT+GGG 0.680711 1_4:+65414739 Msa0178050:CDS
ACATTCATCATCAACTACAA+GGG 0.680961 1_4:+65417466 Msa0178050:CDS
ATGTGAGTGATGAAGTGATG+GGG 0.702468 1_4:+65414740 Msa0178050:CDS
TGGGGCAAATGGATAAACAG+TGG 0.711250 1_4:-65414183 None:intergenic
GTAGCATAACAATGATGTGG+TGG 0.713293 1_4:+65417770 Msa0178050:three_prime_UTR
TTGTGGATCAGATCTAGCTG+GGG 0.717750 1_4:-65414201 None:intergenic
TGTGTAGCATAACAATGATG+TGG 0.725931 1_4:+65417767 Msa0178050:three_prime_UTR
AAAACTGTTGACGACCACTG+TGG 0.747970 1_4:+65417384 Msa0178050:CDS
GATGCTGGGAGTGGATATGG+CGG 0.760121 1_4:-65417212 None:intergenic
TGGAACCAGAGGCTTAACTG+CGG 0.767656 1_4:+65417644 Msa0178050:three_prime_UTR
CGGGTAACCACAGACCACAG+TGG 0.767759 1_4:-65417398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATCAAAATTGAATTATT+GGG - chr1_4:65414120-65414139 None:intergenic 10.0%
!! TTATATCAAAATTGAATTAT+TGG - chr1_4:65414121-65414140 None:intergenic 10.0%
!! ATTATATAAGTTTAAAAAAG+TGG - chr1_4:65414703-65414722 None:intergenic 10.0%
!!! ACTTTTTTAAACTTATATAA+TGG + chr1_4:65414702-65414721 Msa0178050:exon 10.0%
!! TAAAAAAGAATATTACTATT+AGG + chr1_4:65415836-65415855 Msa0178050:intron 10.0%
!!! ATTATTCTTTTTTTTTTTGA+AGG + chr1_4:65416768-65416787 Msa0178050:intron 10.0%
!!! TTATTCTTTTTTTTTTTGAA+GGG + chr1_4:65416769-65416788 Msa0178050:intron 10.0%
!!! TTTCAAAATTTGAAGTTTTT+AGG + chr1_4:65414401-65414420 Msa0178050:intron 15.0%
!! AAAAGAAACAAAATCAAAAA+AGG - chr1_4:65414449-65414468 None:intergenic 15.0%
!!! TTTTTTGATTTTGTTTCTTT+TGG + chr1_4:65414448-65414467 Msa0178050:intron 15.0%
!!! TTTTTGATTTTGTTTCTTTT+GGG + chr1_4:65414449-65414468 Msa0178050:intron 15.0%
!!! TACTTACAAAACATTTTTTA+AGG + chr1_4:65417824-65417843 Msa0178050:three_prime_UTR 15.0%
!!! TTTTTTGACAAGTTTTTTTA+AGG + chr1_4:65417856-65417875 Msa0178050:three_prime_UTR 15.0%
!! AATTGAATTATTGGGTAATT+GGG - chr1_4:65414112-65414131 None:intergenic 20.0%
!! AAATTGAATTATTGGGTAAT+TGG - chr1_4:65414113-65414132 None:intergenic 20.0%
!!! TTCAAACTTTTGAAGATTTT+TGG + chr1_4:65414144-65414163 Msa0178050:five_prime_UTR 20.0%
!!! TTTAAGTATGTTTTAATGTC+TGG + chr1_4:65414357-65414376 Msa0178050:intron 20.0%
!! ACTACATAATTCTTAAACTT+CGG - chr1_4:65414480-65414499 None:intergenic 20.0%
!! GGAAAAAATCAAAATCATTA+AGG - chr1_4:65414555-65414574 None:intergenic 20.0%
!!! ATTTTGATTTTTTCCTTTTC+AGG + chr1_4:65414560-65414579 Msa0178050:intron 20.0%
!!! TTTTGATTTTTTCCTTTTCA+GGG + chr1_4:65414561-65414580 Msa0178050:intron 20.0%
!!! AAACTTATATAATGGTTTTC+TGG + chr1_4:65414710-65414729 Msa0178050:exon 20.0%
!!! AACTTATATAATGGTTTTCT+GGG + chr1_4:65414711-65414730 Msa0178050:exon 20.0%
!! TATAAGAGAAACTATTTAGA+AGG + chr1_4:65415271-65415290 Msa0178050:intron 20.0%
!! AGTGGTATATAAATAAATTC+AGG - chr1_4:65415803-65415822 None:intergenic 20.0%
!!! TTTTATCATTGACAAAATAG+TGG - chr1_4:65415821-65415840 None:intergenic 20.0%
!! TTTATTATATGCAAAGAGAT+TGG - chr1_4:65415938-65415957 None:intergenic 20.0%
!! TACAATTGTCAAATATTAAC+AGG + chr1_4:65416008-65416027 Msa0178050:intron 20.0%
!! ATTCAGTATTAAAGTAAACA+TGG + chr1_4:65416122-65416141 Msa0178050:intron 20.0%
!!! TTTTTATGTTTAGTTAATGC+TGG + chr1_4:65416168-65416187 Msa0178050:intron 20.0%
!! TATATCTACAGGAAATTAAT+TGG - chr1_4:65416690-65416709 None:intergenic 20.0%
!!! TTTTTTTTTTTGAAGGGAAA+GGG + chr1_4:65416775-65416794 Msa0178050:intron 20.0%
!! GTTGATTATAATATAAGCTT+TGG + chr1_4:65417000-65417019 Msa0178050:intron 20.0%
!!! TGTTATTCTGGAAAAATAAA+TGG - chr1_4:65417434-65417453 None:intergenic 20.0%
!! CTAGTTAAATGTAATTGTTA+TGG + chr1_4:65417608-65417627 Msa0178050:exon 20.0%
!! TATTTTACCATATTCTCTTC+TGG + chr1_4:65414296-65414315 Msa0178050:intron 25.0%
!! ATTTTACCATATTCTCTTCT+GGG + chr1_4:65414297-65414316 Msa0178050:intron 25.0%
!!! AATTTGAAGTTTTTAGGTTG+TGG + chr1_4:65414407-65414426 Msa0178050:intron 25.0%
!!! ATTTGAAGTTTTTAGGTTGT+GGG + chr1_4:65414408-65414427 Msa0178050:intron 25.0%
!!! GTTGTTTTAGCATAAAATTG+AGG + chr1_4:65414672-65414691 Msa0178050:five_prime_UTR 25.0%
! TATATCCAATAAACCACAAT+AGG - chr1_4:65414775-65414794 None:intergenic 25.0%
! AGATGAAGAAAAGAAGAATT+TGG + chr1_4:65414852-65414871 Msa0178050:CDS 25.0%
! AGAGTGATTTATAATTCATC+AGG + chr1_4:65415500-65415519 Msa0178050:intron 25.0%
! GAGTGATTTATAATTCATCA+GGG + chr1_4:65415501-65415520 Msa0178050:intron 25.0%
!! TTATAATTCATCAGGGATTT+TGG + chr1_4:65415508-65415527 Msa0178050:intron 25.0%
! ATCAAACTATTACATAGTGT+GGG - chr1_4:65415640-65415659 None:intergenic 25.0%
! AATCAAACTATTACATAGTG+TGG - chr1_4:65415641-65415660 None:intergenic 25.0%
! TTTGGTACAAGTTTATTGTT+GGG - chr1_4:65415680-65415699 None:intergenic 25.0%
!! TTTTGGTACAAGTTTATTGT+TGG - chr1_4:65415681-65415700 None:intergenic 25.0%
!!! AAACGGGTTATATTGAATTT+TGG - chr1_4:65415698-65415717 None:intergenic 25.0%
! AGAATATTACTATTAGGAGT+TGG + chr1_4:65415842-65415861 Msa0178050:intron 25.0%
! GAATATTACTATTAGGAGTT+GGG + chr1_4:65415843-65415862 Msa0178050:intron 25.0%
!! TACTAAAATGGTTGTTTCAA+GGG - chr1_4:65415963-65415982 None:intergenic 25.0%
! GTACTAAAATGACTTATCTT+TGG - chr1_4:65415991-65416010 None:intergenic 25.0%
!!! ACATAAAAAGAAGAGTACTA+TGG - chr1_4:65416157-65416176 None:intergenic 25.0%
! TTTGTAAAAAGACAACTTGT+TGG - chr1_4:65416278-65416297 None:intergenic 25.0%
! ACTTCTGAATTATATCTAGA+GGG - chr1_4:65416393-65416412 None:intergenic 25.0%
!! CTTATGATTTTCAATTCACT+AGG - chr1_4:65416567-65416586 None:intergenic 25.0%
!!! CTTTTTTTTTTTGAAGGGAA+AGG + chr1_4:65416774-65416793 Msa0178050:intron 25.0%
!!! ATAATTTGCTTAGTGATAGA+AGG - chr1_4:65417111-65417130 None:intergenic 25.0%
! AAATAAATGGAAGATATTGC+CGG - chr1_4:65417421-65417440 None:intergenic 25.0%
GGAAAAAGTAGAATGAATTG+TGG - chr1_4:65414221-65414240 None:intergenic 30.0%
!!! TACTTTTTCCTACCTCAAAA+AGG + chr1_4:65414231-65414250 Msa0178050:five_prime_UTR 30.0%
!! ACTTTTTCCTACCTCAAAAA+GGG + chr1_4:65414232-65414251 Msa0178050:five_prime_UTR 30.0%
!! TCAAATCGTTTTTCATCATC+TGG + chr1_4:65414266-65414285 Msa0178050:five_prime_UTR 30.0%
!! CAAATCGTTTTTCATCATCT+GGG + chr1_4:65414267-65414286 Msa0178050:five_prime_UTR 30.0%
!! AAATCGTTTTTCATCATCTG+GGG + chr1_4:65414268-65414287 Msa0178050:five_prime_UTR 30.0%
ATCAAAATCATTAAGGCTGT+TGG - chr1_4:65414548-65414567 None:intergenic 30.0%
!!! ACTTGCTGCTTTTGATTTTT+TGG + chr1_4:65414634-65414653 Msa0178050:five_prime_UTR 30.0%
!!! CTTGCTGCTTTTGATTTTTT+GGG + chr1_4:65414635-65414654 Msa0178050:five_prime_UTR 30.0%
!!! TGCTTTTGATTTTTTGGGTT+GGG + chr1_4:65414640-65414659 Msa0178050:five_prime_UTR 30.0%
!! TATATAATGGTTTTCTGGGA+AGG + chr1_4:65414715-65414734 Msa0178050:exon 30.0%
TTCCTTCTTTAGATAACTAC+CGG + chr1_4:65414815-65414834 Msa0178050:CDS 30.0%
GTGTGAACAACTATTATTAC+TGG - chr1_4:65414982-65415001 None:intergenic 30.0%
AAGTAGAAACTAGACTTAGA+TGG + chr1_4:65415159-65415178 Msa0178050:intron 30.0%
AAGACTTGGATTATGTAGTA+AGG + chr1_4:65415189-65415208 Msa0178050:intron 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG - chr1_4:65415263-65415282 None:intergenic 30.0%
TGTTGTTGTCTCTATTTAGT+TGG + chr1_4:65415375-65415394 Msa0178050:intron 30.0%
TGTACTCTGTTAAAGCTAAA+CGG + chr1_4:65415574-65415593 Msa0178050:intron 30.0%
CATAAAATAGAGTTCCAACT+TGG - chr1_4:65415736-65415755 None:intergenic 30.0%
TAAAGTGAACATAACTTCAG+GGG - chr1_4:65415767-65415786 None:intergenic 30.0%
CTAAAGTGAACATAACTTCA+GGG - chr1_4:65415768-65415787 None:intergenic 30.0%
GATAGGAAACTCTTCTTAAA+TGG + chr1_4:65415872-65415891 Msa0178050:intron 30.0%
! TGTTCTAATTGAAGCCATTT+TGG - chr1_4:65415908-65415927 None:intergenic 30.0%
! CTACTAAAATGGTTGTTTCA+AGG - chr1_4:65415964-65415983 None:intergenic 30.0%
TCAAATATTAACAGGTGTAG+AGG + chr1_4:65416016-65416035 Msa0178050:intron 30.0%
CAAATATTAACAGGTGTAGA+GGG + chr1_4:65416017-65416036 Msa0178050:intron 30.0%
TTCATTTCCAACAAAGTTCA+AGG - chr1_4:65416207-65416226 None:intergenic 30.0%
ACAAAACATGTCATGTAAAC+AGG + chr1_4:65416293-65416312 Msa0178050:intron 30.0%
TATATCTAGAGGGAAATTCA+GGG - chr1_4:65416383-65416402 None:intergenic 30.0%
TTATATCTAGAGGGAAATTC+AGG - chr1_4:65416384-65416403 None:intergenic 30.0%
GACTTCTGAATTATATCTAG+AGG - chr1_4:65416394-65416413 None:intergenic 30.0%
TAGATATAATTCAGAAGTCC+TGG + chr1_4:65416395-65416414 Msa0178050:intron 30.0%
AGCAGTTATATTAATAGTCC+TGG + chr1_4:65416587-65416606 Msa0178050:intron 30.0%
!! AATTCAGTTTTATGTCTGGT+TGG + chr1_4:65416880-65416899 Msa0178050:intron 30.0%
TAACATATCTAACATGTGCT+TGG + chr1_4:65417033-65417052 Msa0178050:intron 30.0%
CATTATTGCAATGTTTGTGA+TGG + chr1_4:65417137-65417156 Msa0178050:CDS 30.0%
AGCAAAGCAGAAGAATATAA+CGG - chr1_4:65417358-65417377 None:intergenic 30.0%
AATAAATGGAAGATATTGCC+GGG - chr1_4:65417420-65417439 None:intergenic 30.0%
ACATTCATCATCAACTACAA+GGG + chr1_4:65417466-65417485 Msa0178050:CDS 30.0%
! CAAGAATTTTATCCCATATG+GGG - chr1_4:65417521-65417540 None:intergenic 30.0%
! CCAAGAATTTTATCCCATAT+GGG - chr1_4:65417522-65417541 None:intergenic 30.0%
CCATATGGGATAAAATTCTT+GGG + chr1_4:65417520-65417539 Msa0178050:CDS 30.0%
!!! GTTATGGCAAATTTTTTCGA+TGG + chr1_4:65417624-65417643 Msa0178050:three_prime_UTR 30.0%
ATCATCATCTTTGTTACAGT+AGG + chr1_4:65417728-65417747 Msa0178050:three_prime_UTR 30.0%
! AGAATGAGAAACCCTTTTTG+AGG - chr1_4:65414246-65414265 None:intergenic 35.0%
AAGAAACCCAGAAGAGAATA+TGG - chr1_4:65414306-65414325 None:intergenic 35.0%
!! TTTCCTTTTCAGGGTTTTGA+AGG + chr1_4:65414570-65414589 Msa0178050:intron 35.0%
!!! CTGCTTTTGATTTTTTGGGT+TGG + chr1_4:65414639-65414658 Msa0178050:five_prime_UTR 35.0%
!!! TTTGATTTTTTGGGTTGGGT+TGG + chr1_4:65414644-65414663 Msa0178050:five_prime_UTR 35.0%
!!! TTGATTTTTTGGGTTGGGTT+GGG + chr1_4:65414645-65414664 Msa0178050:five_prime_UTR 35.0%
ATATGTGAGTGATGAAGTGA+TGG + chr1_4:65414738-65414757 Msa0178050:CDS 35.0%
TATGTGAGTGATGAAGTGAT+GGG + chr1_4:65414739-65414758 Msa0178050:CDS 35.0%
TTGCTCCTATTGTGGTTTAT+TGG + chr1_4:65414767-65414786 Msa0178050:CDS 35.0%
GTGGTTTATTGGATATATGC+TGG + chr1_4:65414778-65414797 Msa0178050:CDS 35.0%
AACCGGTAGTTATCTAAAGA+AGG - chr1_4:65414820-65414839 None:intergenic 35.0%
! CCTTTCACAACTGCTTTAAA+GGG - chr1_4:65414880-65414899 None:intergenic 35.0%
ACCTTTCACAACTGCTTTAA+AGG - chr1_4:65414881-65414900 None:intergenic 35.0%
GGATCTAGAGATTAATGAGT+TGG + chr1_4:65415292-65415311 Msa0178050:intron 35.0%
! TAATGAGTTGGAGAAAGACA+TGG + chr1_4:65415304-65415323 Msa0178050:intron 35.0%
TAAAGCAACACCAAGAATTG+GGG - chr1_4:65415405-65415424 None:intergenic 35.0%
GTAAAGCAACACCAAGAATT+GGG - chr1_4:65415406-65415425 None:intergenic 35.0%
AGTAAAGCAACACCAAGAAT+TGG - chr1_4:65415407-65415426 None:intergenic 35.0%
! CTACTCTTAGCTCTCAATTT+GGG - chr1_4:65415441-65415460 None:intergenic 35.0%
! ACTACTCTTAGCTCTCAATT+TGG - chr1_4:65415442-65415461 None:intergenic 35.0%
AGCTAAGAGTAGTAGATAAG+AGG + chr1_4:65415449-65415468 Msa0178050:intron 35.0%
!! GTTGCTTTCTCATGTTTTGA+CGG + chr1_4:65415536-65415555 Msa0178050:intron 35.0%
!! TTTTGACGGACACAATGTTT+TGG + chr1_4:65415550-65415569 Msa0178050:intron 35.0%
!! TTTGACGGACACAATGTTTT+GGG + chr1_4:65415551-65415570 Msa0178050:intron 35.0%
CAAGTTTATTGTTGGGACTT+GGG - chr1_4:65415673-65415692 None:intergenic 35.0%
ACAAGTTTATTGTTGGGACT+TGG - chr1_4:65415674-65415693 None:intergenic 35.0%
GAGTTATGCAAATGGAAAAC+GGG - chr1_4:65415714-65415733 None:intergenic 35.0%
GGAGTTATGCAAATGGAAAA+CGG - chr1_4:65415715-65415734 None:intergenic 35.0%
CCTAAAGTGAACATAACTTC+AGG - chr1_4:65415769-65415788 None:intergenic 35.0%
CCTGAAGTTATGTTCACTTT+AGG + chr1_4:65415766-65415785 Msa0178050:intron 35.0%
TATTACTATTAGGAGTTGGG+AGG + chr1_4:65415846-65415865 Msa0178050:intron 35.0%
TATATGCAAAGAGATTGGAC+AGG - chr1_4:65415933-65415952 None:intergenic 35.0%
!! TCTTTGGAGCTCTACTAAAA+TGG - chr1_4:65415975-65415994 None:intergenic 35.0%
TGCAACACTACCATAAAGTA+TGG + chr1_4:65416065-65416084 Msa0178050:intron 35.0%
GCAACACTACCATAAAGTAT+GGG + chr1_4:65416066-65416085 Msa0178050:intron 35.0%
!! ATTCAGCGTGTTTTTGAACT+TGG + chr1_4:65416090-65416109 Msa0178050:intron 35.0%
ACAAAGTTCAAGGATAACCA+CGG - chr1_4:65416197-65416216 None:intergenic 35.0%
TGGTTATCCTTGAACTTTGT+TGG + chr1_4:65416197-65416216 Msa0178050:intron 35.0%
ATCTATATCTGTGTCAGTTG+AGG + chr1_4:65416450-65416469 Msa0178050:intron 35.0%
TTAAAACGCGAAACTGTGTT+TGG + chr1_4:65416493-65416512 Msa0178050:intron 35.0%
TTGTGCCTCTTAATTGGAAA+AGG - chr1_4:65416544-65416563 None:intergenic 35.0%
CAGCAAGAGAATATATCTAC+AGG - chr1_4:65416701-65416720 None:intergenic 35.0%
ATACTAATGGCATGTGTTTG+AGG + chr1_4:65416845-65416864 Msa0178050:intron 35.0%
TACTAATGGCATGTGTTTGA+GGG + chr1_4:65416846-65416865 Msa0178050:intron 35.0%
!! AGGGAATTCAGTTTTATGTC+TGG + chr1_4:65416876-65416895 Msa0178050:intron 35.0%
!! AGTTTTATGTCTGGTTGGTT+GGG + chr1_4:65416885-65416904 Msa0178050:intron 35.0%
AATACAATAACCCAACCTCT+TGG - chr1_4:65416931-65416950 None:intergenic 35.0%
AGAATAACATTCTGCAGAGT+TGG - chr1_4:65416971-65416990 None:intergenic 35.0%
!! CAATGTTTGTGATGGATACA+TGG + chr1_4:65417145-65417164 Msa0178050:CDS 35.0%
CTCAATAGGGTGATTGTAAA+GGG - chr1_4:65417268-65417287 None:intergenic 35.0%
CTTTACAATCACCCTATTGA+GGG + chr1_4:65417267-65417286 Msa0178050:CDS 35.0%
GACATTCATCATCAACTACA+AGG + chr1_4:65417465-65417484 Msa0178050:CDS 35.0%
CCCATATGGGATAAAATTCT+TGG + chr1_4:65417519-65417538 Msa0178050:CDS 35.0%
! CCCAAGAATTTTATCCCATA+TGG - chr1_4:65417523-65417542 None:intergenic 35.0%
ACATTTAACTAGTCCTTTGC+AGG - chr1_4:65417600-65417619 None:intergenic 35.0%
!!! AATTTTTTCGATGGAACCAG+AGG + chr1_4:65417633-65417652 Msa0178050:three_prime_UTR 35.0%
ATTGTTATGCTACACAAGGT+GGG - chr1_4:65417763-65417782 None:intergenic 35.0%
CATCATTGTTATGCTACACA+AGG - chr1_4:65417767-65417786 None:intergenic 35.0%
TGTGTAGCATAACAATGATG+TGG + chr1_4:65417767-65417786 Msa0178050:three_prime_UTR 35.0%
TTTCTCCCTCAAACGTGTTT+GGG - chr1_4:65414044-65414063 None:intergenic 40.0%
GTTTGAGGGAGAAAGAAAGA+AGG + chr1_4:65414050-65414069 Msa0178050:five_prime_UTR 40.0%
GGAGAAAGAAAGAAGGTTCA+CGG + chr1_4:65414057-65414076 Msa0178050:five_prime_UTR 40.0%
GAGAAAGAAAGAAGGTTCAC+GGG + chr1_4:65414058-65414077 Msa0178050:five_prime_UTR 40.0%
! ACGGGAGTGTGTAATAGTTT+AGG + chr1_4:65414076-65414095 Msa0178050:five_prime_UTR 40.0%
! CGGGAGTGTGTAATAGTTTA+GGG + chr1_4:65414077-65414096 Msa0178050:five_prime_UTR 40.0%
ATTGTGGATCAGATCTAGCT+GGG - chr1_4:65414205-65414224 None:intergenic 40.0%
AATTGTGGATCAGATCTAGC+TGG - chr1_4:65414206-65414225 None:intergenic 40.0%
!!! TGAGAAACCCTTTTTGAGGT+AGG - chr1_4:65414242-65414261 None:intergenic 40.0%
!! TTTAGGTTGTGGGAACTATG+TGG + chr1_4:65414418-65414437 Msa0178050:intron 40.0%
GTTCCTTCAAAACCCTGAAA+AGG - chr1_4:65414576-65414595 None:intergenic 40.0%
ATGTGAGTGATGAAGTGATG+GGG + chr1_4:65414740-65414759 Msa0178050:CDS 40.0%
!! CCCTTTAAAGCAGTTGTGAA+AGG + chr1_4:65414877-65414896 Msa0178050:CDS 40.0%
TAGATGGTAGAGAGAAGACT+TGG + chr1_4:65415175-65415194 Msa0178050:intron 40.0%
GAGTCAAATCACAAGAGGTA+GGG + chr1_4:65415232-65415251 Msa0178050:intron 40.0%
!!! AGTTGGTTTTCCCCAATTCT+TGG + chr1_4:65415392-65415411 Msa0178050:intron 40.0%
CTGTGACTCTTCTAACTGTA+TGG + chr1_4:65415474-65415493 Msa0178050:intron 40.0%
CCAACTTGGAGTTATGCAAA+TGG - chr1_4:65415722-65415741 None:intergenic 40.0%
CCATTTGCATAACTCCAAGT+TGG + chr1_4:65415719-65415738 Msa0178050:intron 40.0%
TGAACATAACTTCAGGGGAA+TGG - chr1_4:65415762-65415781 None:intergenic 40.0%
! ATGGTAGAAGCATGCCAAAA+TGG + chr1_4:65415891-65415910 Msa0178050:intron 40.0%
CGCTGAATTCCCATACTTTA+TGG - chr1_4:65416078-65416097 None:intergenic 40.0%
TTAGTTAATGCTGGATTCCG+TGG + chr1_4:65416177-65416196 Msa0178050:intron 40.0%
AATAGATCGACCTTGTTCAC+TGG - chr1_4:65416332-65416351 None:intergenic 40.0%
TTGACAACTGCTTAACACAC+AGG - chr1_4:65416431-65416450 None:intergenic 40.0%
CCTCTTAATTGGAAAAGGTC+AGG - chr1_4:65416539-65416558 None:intergenic 40.0%
! CCTGACCTTTTCCAATTAAG+AGG + chr1_4:65416536-65416555 Msa0178050:intron 40.0%
ACTAGGTTGTGCCTCTTAAT+TGG - chr1_4:65416550-65416569 None:intergenic 40.0%
ACTAATGGCATGTGTTTGAG+GGG + chr1_4:65416847-65416866 Msa0178050:intron 40.0%
!! CAGTTTTATGTCTGGTTGGT+TGG + chr1_4:65416884-65416903 Msa0178050:intron 40.0%
CTCTCTAATTCCAAGAGGTT+GGG + chr1_4:65416918-65416937 Msa0178050:intron 40.0%
ACGACAACATCAAATGCATC+AGG + chr1_4:65417072-65417091 Msa0178050:CDS 40.0%
CGACAACATCAAATGCATCA+GGG + chr1_4:65417073-65417092 Msa0178050:CDS 40.0%
GACAACATCAAATGCATCAG+GGG + chr1_4:65417074-65417093 Msa0178050:CDS 40.0%
AACAACCAGTCTATGATGCT+GGG - chr1_4:65417229-65417248 None:intergenic 40.0%
CTGGTTGTTCCTTATGCAAT+AGG + chr1_4:65417240-65417259 Msa0178050:CDS 40.0%
TAAAGGGCTCCTATTGCATA+AGG - chr1_4:65417252-65417271 None:intergenic 40.0%
CCTCAATAGGGTGATTGTAA+AGG - chr1_4:65417269-65417288 None:intergenic 40.0%
CCTTTACAATCACCCTATTG+AGG + chr1_4:65417266-65417285 Msa0178050:CDS 40.0%
CAAGTAGAAGACCCTCAATA+GGG - chr1_4:65417281-65417300 None:intergenic 40.0%
TCAAGTAGAAGACCCTCAAT+AGG - chr1_4:65417282-65417301 None:intergenic 40.0%
! CCATCTCGTTTCTTGTTTCA+GGG + chr1_4:65417316-65417335 Msa0178050:CDS 40.0%
! CATGATACGCAGTGTTATTC+TGG - chr1_4:65417446-65417465 None:intergenic 40.0%
TTATCCCATATGGGGAAGAA+CGG - chr1_4:65417513-65417532 None:intergenic 40.0%
GCTCGCTTTACAAGATTGAA+AGG - chr1_4:65417555-65417574 None:intergenic 40.0%
!!! CGGACATTTTTCGAGTTGAT+TGG + chr1_4:65417664-65417683 Msa0178050:three_prime_UTR 40.0%
CATTGTTATGCTACACAAGG+TGG - chr1_4:65417764-65417783 None:intergenic 40.0%
GTAGCATAACAATGATGTGG+TGG + chr1_4:65417770-65417789 Msa0178050:three_prime_UTR 40.0%
! TACAACTTTAAGTTCGAGCG+TGG + chr1_4:65417922-65417941 Msa0178050:three_prime_UTR 40.0%
GGGCTAAAGTTTCTAATGCA+TGG - chr1_4:65417962-65417981 None:intergenic 40.0%
TTGTCTCCCAAACACGTTTG+AGG + chr1_4:65414035-65414054 Msa0178050:five_prime_UTR 45.0%
TGTCTCCCAAACACGTTTGA+GGG + chr1_4:65414036-65414055 Msa0178050:five_prime_UTR 45.0%
CTTTCTCCCTCAAACGTGTT+TGG - chr1_4:65414045-65414064 None:intergenic 45.0%
TGGGGCAAATGGATAAACAG+TGG - chr1_4:65414186-65414205 None:intergenic 45.0%
TTGTGGATCAGATCTAGCTG+GGG - chr1_4:65414204-65414223 None:intergenic 45.0%
!!! TTTTTTGGGTTGGGTTGGGT+TGG + chr1_4:65414649-65414668 Msa0178050:five_prime_UTR 45.0%
!!! TTTTTGGGTTGGGTTGGGTT+GGG + chr1_4:65414650-65414669 Msa0178050:five_prime_UTR 45.0%
CATCTCTCGTAGTATGCAAC+CGG - chr1_4:65414837-65414856 None:intergenic 45.0%
! TTTGCTTCAGCAGCTTGTTC+AGG + chr1_4:65414903-65414922 Msa0178050:CDS 45.0%
GGCAATTGTTGCACTCATCT+TGG + chr1_4:65414924-65414943 Msa0178050:CDS 45.0%
AAGGAGAGTAGATCAGACGA+AGG + chr1_4:65415208-65415227 Msa0178050:intron 45.0%
AGGAGAGTAGATCAGACGAA+GGG + chr1_4:65415209-65415228 Msa0178050:intron 45.0%
AAGGGGAGTCAAATCACAAG+AGG + chr1_4:65415227-65415246 Msa0178050:intron 45.0%
GGAGTCAAATCACAAGAGGT+AGG + chr1_4:65415231-65415250 Msa0178050:intron 45.0%
GTTTATTGTTGGGACTTGGG+AGG - chr1_4:65415670-65415689 None:intergenic 45.0%
TTGATCCAGTCCAGTGAACA+AGG + chr1_4:65416319-65416338 Msa0178050:intron 45.0%
CTAGGCTCTCTAATTCCAAG+AGG + chr1_4:65416913-65416932 Msa0178050:intron 45.0%
GCTCTCTAATTCCAAGAGGT+TGG + chr1_4:65416917-65416936 Msa0178050:intron 45.0%
CATGGCAGTACTTTGTGCAT+CGG + chr1_4:65417163-65417182 Msa0178050:CDS 45.0%
TATGATGCTGGGAGTGGATA+TGG - chr1_4:65417218-65417237 None:intergenic 45.0%
GAACAACCAGTCTATGATGC+TGG - chr1_4:65417230-65417249 None:intergenic 45.0%
GGTCTTCTACTTGACACTGT+TGG + chr1_4:65417288-65417307 Msa0178050:CDS 45.0%
CTTCTACTTGACACTGTTGG+TGG + chr1_4:65417291-65417310 Msa0178050:CDS 45.0%
! GCCATCTCGTTTCTTGTTTC+AGG + chr1_4:65417315-65417334 Msa0178050:CDS 45.0%
CCCTGAAACAAGAAACGAGA+TGG - chr1_4:65417319-65417338 None:intergenic 45.0%
AAAACTGTTGACGACCACTG+TGG + chr1_4:65417384-65417403 Msa0178050:CDS 45.0%
AATCTTGTAAAGCGAGCCGA+AGG + chr1_4:65417558-65417577 Msa0178050:CDS 45.0%
ATCTTGTAAAGCGAGCCGAA+GGG + chr1_4:65417559-65417578 Msa0178050:CDS 45.0%
!! TCGAGTTGATTGGAGCTTGT+AGG + chr1_4:65417674-65417693 Msa0178050:three_prime_UTR 45.0%
!! CGAGTTGATTGGAGCTTGTA+GGG + chr1_4:65417675-65417694 Msa0178050:three_prime_UTR 45.0%
! GAGTTGATTGGAGCTTGTAG+GGG + chr1_4:65417676-65417695 Msa0178050:three_prime_UTR 45.0%
!! GGAGCTTGTAGGGGTTTTAT+TGG + chr1_4:65417685-65417704 Msa0178050:three_prime_UTR 45.0%
!!! GCTTGTAGGGGTTTTATTGG+TGG + chr1_4:65417688-65417707 Msa0178050:three_prime_UTR 45.0%
!!! TAGGGGTTTTATTGGTGGCT+TGG + chr1_4:65417693-65417712 Msa0178050:three_prime_UTR 45.0%
TTATGCTACACAAGGTGGGT+TGG - chr1_4:65417759-65417778 None:intergenic 45.0%
!! TATTATTAAATAAATACTAA+TGG + chr1_4:65416832-65416851 Msa0178050:intron 5.0%
TCAGATCTAGCTGGGGCAAA+TGG - chr1_4:65414197-65414216 None:intergenic 50.0%
GGTTGTGGGAACTATGTGGT+TGG + chr1_4:65414422-65414441 Msa0178050:intron 50.0%
! GGGGACTTTTGCTCCTATTG+TGG + chr1_4:65414759-65414778 Msa0178050:CDS 50.0%
GGAGAGTAGATCAGACGAAG+GGG + chr1_4:65415210-65415229 Msa0178050:intron 50.0%
ACAAGAGGTAGGGAAAGACC+TGG + chr1_4:65415242-65415261 Msa0178050:intron 50.0%
! AAGCCTTATCCCACTAAGCG+GGG - chr1_4:65415352-65415371 None:intergenic 50.0%
! CAAGCCTTATCCCACTAAGC+GGG - chr1_4:65415353-65415372 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+CGG - chr1_4:65415354-65415373 None:intergenic 50.0%
TAGGAGTTGGGAGGCAAGAT+AGG + chr1_4:65415855-65415874 Msa0178050:intron 50.0%
! AGAGATCATGTCGCACTGGT+TGG - chr1_4:65416252-65416271 None:intergenic 50.0%
GTCAAGAGATCATGTCGCAC+TGG - chr1_4:65416256-65416275 None:intergenic 50.0%
ATCGACCTTGTTCACTGGAC+TGG - chr1_4:65416327-65416346 None:intergenic 50.0%
CACACAGGCGACAAAAATCC+AGG - chr1_4:65416416-65416435 None:intergenic 50.0%
CAGTGCTAGAAGCAGTAACC+AGG - chr1_4:65416608-65416627 None:intergenic 50.0%
TGGCATGTGTTTGAGGGGAA+AGG + chr1_4:65416852-65416871 Msa0178050:intron 50.0%
GGCATGTGTTTGAGGGGAAA+GGG + chr1_4:65416853-65416872 Msa0178050:intron 50.0%
ATGTGTTTGAGGGGAAAGGG+AGG + chr1_4:65416856-65416875 Msa0178050:intron 50.0%
TGTGTTTGAGGGGAAAGGGA+GGG + chr1_4:65416857-65416876 Msa0178050:intron 50.0%
TCAGCCGTTCTTCCCCATAT+GGG + chr1_4:65417506-65417525 Msa0178050:CDS 50.0%
TCTTGTAAAGCGAGCCGAAG+GGG + chr1_4:65417560-65417579 Msa0178050:CDS 50.0%
!!! TTTTGAGGCAAGGCCTGCAA+AGG + chr1_4:65417584-65417603 Msa0178050:CDS 50.0%
TGGAACCAGAGGCTTAACTG+CGG + chr1_4:65417644-65417663 Msa0178050:three_prime_UTR 50.0%
AATGTCCGCAGTTAAGCCTC+TGG - chr1_4:65417652-65417671 None:intergenic 50.0%
ATGTAGCCAACCCCGCTTAG+TGG + chr1_4:65415339-65415358 Msa0178050:intron 55.0%
TGTAGCCAACCCCGCTTAGT+GGG + chr1_4:65415340-65415359 Msa0178050:intron 55.0%
CTTATCCCACTAAGCGGGGT+TGG - chr1_4:65415348-65415367 None:intergenic 55.0%
CAACCCCGCTTAGTGGGATA+AGG + chr1_4:65415346-65415365 Msa0178050:intron 55.0%
CCGCTTAGTGGGATAAGGCT+TGG + chr1_4:65415351-65415370 Msa0178050:intron 55.0%
! CTGGTTGGTTGGGAGAGACT+AGG + chr1_4:65416895-65416914 Msa0178050:intron 55.0%
GATGCTGGGAGTGGATATGG+CGG - chr1_4:65417215-65417234 None:intergenic 55.0%
CCAGTCTATGATGCTGGGAG+TGG - chr1_4:65417224-65417243 None:intergenic 55.0%
CCACTCCCAGCATCATAGAC+TGG + chr1_4:65417221-65417240 Msa0178050:CDS 55.0%
TTGACGACCACTGTGGTCTG+TGG + chr1_4:65417391-65417410 Msa0178050:CDS 55.0%
CACTGTGGTCTGTGGTTACC+CGG + chr1_4:65417399-65417418 Msa0178050:CDS 55.0%
CTCAGCCGTTCTTCCCCATA+TGG + chr1_4:65417505-65417524 Msa0178050:CDS 55.0%
CTTGTAAAGCGAGCCGAAGG+GGG + chr1_4:65417561-65417580 Msa0178050:CDS 55.0%
CCTTGCCTCAAAACCCCCTT+CGG - chr1_4:65417577-65417596 None:intergenic 55.0%
CGGGTAACCACAGACCACAG+TGG - chr1_4:65417401-65417420 None:intergenic 60.0%
!!! CCGAAGGGGGTTTTGAGGCA+AGG + chr1_4:65417574-65417593 Msa0178050:CDS 60.0%
! GCGAGCCGAAGGGGGTTTTG+AGG + chr1_4:65417569-65417588 Msa0178050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65414034 65417992 65414034 ID=Msa0178050;Name=Msa0178050
chr1_4 mRNA 65414034 65417992 65414034 ID=Msa0178050-mRNA-1;Parent=Msa0178050;Name=Msa0178050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=395|1|1|1|0.5|0.33|3|381|255
chr1_4 exon 65414034 65414289 65414034 ID=Msa0178050-mRNA-1:exon:21264;Parent=Msa0178050-mRNA-1
chr1_4 exon 65414582 65414945 65414582 ID=Msa0178050-mRNA-1:exon:21265;Parent=Msa0178050-mRNA-1
chr1_4 exon 65417069 65417992 65417069 ID=Msa0178050-mRNA-1:exon:21266;Parent=Msa0178050-mRNA-1
chr1_4 five_prime_UTR 65414034 65414289 65414034 ID=Msa0178050-mRNA-1:five_prime_utr;Parent=Msa0178050-mRNA-1
chr1_4 five_prime_UTR 65414582 65414720 65414582 ID=Msa0178050-mRNA-1:five_prime_utr;Parent=Msa0178050-mRNA-1
chr1_4 CDS 65414721 65414945 65414721 ID=Msa0178050-mRNA-1:cds;Parent=Msa0178050-mRNA-1
chr1_4 CDS 65417069 65417611 65417069 ID=Msa0178050-mRNA-1:cds;Parent=Msa0178050-mRNA-1
chr1_4 three_prime_UTR 65417612 65417992 65417612 ID=Msa0178050-mRNA-1:three_prime_utr;Parent=Msa0178050-mRNA-1
Gene Sequence

>Msa0178050

ATGGTTTTCTGGGAAGGATATGTGAGTGATGAAGTGATGGGGACTTTTGCTCCTATTGTGGTTTATTGGATATATGCTGGATTTTATCAATTGCTTCCTTCTTTAGATAACTACCGGTTGCATACTACGAGAGATGAAGAAAAGAAGAATTTGGTGCCCTTTAAAGCAGTTGTGAAAGGTGTTTTGCTTCAGCAGCTTGTTCAGGCAATTGTTGCACTCATCTTGTTGACGACAACATCAAATGCATCAGGGGTTACAGTGCAGCCTTCTATCACTAAGCAAATTATTCAGATCATTATTGCAATGTTTGTGATGGATACATGGCAGTACTTTGTGCATCGGTACATGCATCAGAACAAGTTTTTATACCGCCATATCCACTCCCAGCATCATAGACTGGTTGTTCCTTATGCAATAGGAGCCCTTTACAATCACCCTATTGAGGGTCTTCTACTTGACACTGTTGGTGGAGCCATCTCGTTTCTTGTTTCAGGGATGACTGCGAGAACAGCCGTTATATTCTTCTGCTTTGCTGTTGTGAAAACTGTTGACGACCACTGTGGTCTGTGGTTACCCGGCAATATCTTCCATTTATTTTTCCAGAATAACACTGCGTATCATGACATTCATCATCAACTACAAGGGCTGAAATACAATTATTCTCAGCCGTTCTTCCCCATATGGGATAAAATTCTTGGGACACACATGCCTTTCAATCTTGTAAAGCGAGCCGAAGGGGGTTTTGAGGCAAGGCCTGCAAAGGACTAG
Protein sequence

>Msa0178050

MVFWEGYVSDEVMGTFAPIVVYWIYAGFYQLLPSLDNYRLHTTRDEEKKNLVPFKAVVKGVLLQQLVQAIVALILLTTTSNASGVTVQPSITKQIIQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPIEGLLLDTVGGAISFLVSGMTARTAVIFFCFAVVKTVDDHCGLWLPGNIFHLFFQNNTAYHDIHHQLQGLKYNYSQPFFPIWDKILGTHMPFNLVKRAEGGFEARPAKD*