AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0016540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016540 MtrunA17_Chr1g0162861 91.945 1316 71 11 1 1307 1 1290 0.0 2199
Msa0016540 MtrunA17_Chr4g0074931 26.706 513 314 14 699 1193 42 510 6.08e-25 111
Msa0016540 MtrunA17_Chr2g0317411 26.850 473 278 12 728 1183 82 503 1.01e-18 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016540 AT1G20970.1 42.879 667 294 19 688 1294 713 1352 4.56e-111 381
Msa0016540 AT4G27500.2 26.496 468 294 11 729 1183 79 509 5.61e-17 86.7
Msa0016540 AT4G27500.1 26.496 468 294 11 729 1183 79 509 1.39e-16 85.5

Find 274 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGTCTGGCTTATTTC+AGG 0.180645 1_1:-27421210 None:intergenic
TTCAGCTTCAATTGAAATTT+CGG 0.262228 1_1:-27418695 None:intergenic
CTCGTAGCTGTTTCCTTTGA+AGG 0.262409 1_1:-27418373 None:intergenic
GCTTCTGCGACCAATTATTA+TGG 0.267077 1_1:+27422380 Msa0016540:three_prime_UTR
ATCACGAAAGCGAAAATCTT+TGG 0.268459 1_1:+27417426 Msa0016540:CDS
TAATTTATTACCATAATAAT+TGG 0.277581 1_1:-27422390 None:intergenic
TCACCTTCATCAGCAGGTTC+TGG 0.286536 1_1:-27418205 None:intergenic
TCCTTTGTATTAACAGTAAC+AGG 0.287802 1_1:-27421156 None:intergenic
AGCTGAAAGCCTGGCTAAAA+AGG 0.291793 1_1:+27419044 Msa0016540:CDS
TAGTTACTGCTTCTGCCTTC+AGG 0.295901 1_1:-27419812 None:intergenic
GAAACTCCAGTTGATGTTAA+TGG 0.302515 1_1:+27417905 Msa0016540:CDS
TACAATTGTTGAAAATGATT+TGG 0.305290 1_1:+27418024 Msa0016540:CDS
GTGGGTTCTAATTGCAGTTC+TGG 0.310673 1_1:+27422055 Msa0016540:CDS
TCCGATTCGCCGACATCAAC+AGG 0.311275 1_1:-27418166 None:intergenic
CATCAGTGGCAGATGCTTCT+TGG 0.313490 1_1:-27418840 None:intergenic
TGAAGTTTCAATTGATGTTT+CGG 0.315237 1_1:-27418665 None:intergenic
CGAAATTCGTGATGTTGAAT+TGG 0.315573 1_1:+27417460 Msa0016540:CDS
GGAAGAGGAGCAGATCTTAA+AGG 0.315964 1_1:+27421350 Msa0016540:CDS
TTTGTTCTCGCAGGTTCATT+AGG 0.316522 1_1:-27421324 None:intergenic
TGATAATCGCGATGTTGAAT+TGG 0.322699 1_1:+27417586 Msa0016540:CDS
TCCACCGCCGTTTCTGTTGA+AGG 0.323975 1_1:-27418406 None:intergenic
CCAACAAAGGGCTCTCTATA+AGG 0.325558 1_1:+27421488 Msa0016540:CDS
CACTAGTTCCGTTGAAGGTT+CGG 0.329971 1_1:-27418473 None:intergenic
TTTGCTTCAATAGTTTGATT+TGG 0.337754 1_1:-27419516 None:intergenic
TGCATTGTTTAATCTATTCA+TGG 0.338109 1_1:-27419298 None:intergenic
AGATCTTCATTTCAAAGCTT+TGG 0.338307 1_1:+27422119 Msa0016540:CDS
CGCTCCACTAGTTCCGTTGA+AGG 0.338346 1_1:-27418478 None:intergenic
CGCCGTTTCAGTTGAAGGTT+CGG 0.344295 1_1:-27418437 None:intergenic
GGCCATTCTATTGGTTGGTC+CGG 0.347271 1_1:+27418926 Msa0016540:CDS
AATCATTAGGTGTTTGCCTT+GGG 0.348423 1_1:+27422188 Msa0016540:three_prime_UTR
CCTTATAGAGAGCCCTTTGT+TGG 0.350120 1_1:-27421488 None:intergenic
TCACTTTCCTTCTTCTCAGC+TGG 0.352413 1_1:-27417509 None:intergenic
GTCTAATATTATTGCAAAAC+AGG 0.352653 1_1:+27419552 Msa0016540:CDS
TGAATCCATCTCTTGTCGTT+TGG 0.352770 1_1:-27419265 None:intergenic
TCCACCGCCGTTTCAGTTGA+AGG 0.359470 1_1:-27418442 None:intergenic
ACATATAGAAGCAATTCTTT+TGG 0.372823 1_1:+27422244 Msa0016540:three_prime_UTR
GGTAAGGAAATTTCTGTTAA+CGG 0.377145 1_1:+27416885 Msa0016540:CDS
GAAGTTTCAGCTTCAATTGA+AGG 0.383520 1_1:-27418718 None:intergenic
TAATCAAGTGGATGAGGTTA+TGG 0.384901 1_1:+27419866 Msa0016540:CDS
CAAACTCCATTAACATCAAC+TGG 0.387744 1_1:-27417911 None:intergenic
GCCGACGTCGTCGGTGTTAT+CGG 0.390676 1_1:-27416793 None:intergenic
GTTGAGTCTGTCTCTGATAA+TGG 0.391317 1_1:+27418058 Msa0016540:CDS
TGTTGAAAATGATTTGGATA+AGG 0.392492 1_1:+27418030 Msa0016540:CDS
TTGGAAAGTGTAGCTGTTCC+TGG 0.396775 1_1:+27417533 Msa0016540:CDS
AAGATTTGTGAAAACGGTTC+GGG 0.399591 1_1:+27417074 Msa0016540:CDS
CAGTCTCCTCACTGTACTCC+TGG 0.401205 1_1:-27420995 None:intergenic
TGAAAATCGTGATGTTCAAT+TGG 0.402656 1_1:+27417718 Msa0016540:CDS
GGAGAAAAGAGCAAAGAAGA+AGG 0.403456 1_1:+27421794 Msa0016540:CDS
ATCAGTGGCAGATGCTTCTT+GGG 0.406247 1_1:-27418839 None:intergenic
TCCTGTTGATGTCGGCGAAT+CGG 0.406322 1_1:+27418165 Msa0016540:CDS
AGCAGATCGAGTTTCTCGTT+GGG 0.417105 1_1:+27421275 Msa0016540:CDS
TGGTGAGGAGGCCATTCTAT+TGG 0.417655 1_1:+27418917 Msa0016540:CDS
TCACGAAAGCGAAAATCTTT+GGG 0.417983 1_1:+27417427 Msa0016540:CDS
TTCAATGAAGGCAGGAATCA+TGG 0.423662 1_1:-27421061 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.425968 1_1:+27418063 Msa0016540:CDS
ATATATGTAATAAATATGTA+AGG 0.426155 1_1:-27422221 None:intergenic
CTTATAGAGAGCCCTTTGTT+GGG 0.427096 1_1:-27421487 None:intergenic
TGAGAAGAAGGAAAGTGAAT+TGG 0.427148 1_1:+27417514 Msa0016540:CDS
CTTGTCAGAGTTTCAGAGCT+AGG 0.427351 1_1:-27421882 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.429116 1_1:+27418102 Msa0016540:CDS
AGGAGACTGCAAACTTTAGA+TGG 0.431793 1_1:+27421009 Msa0016540:CDS
TTCAGTTGAAGCTGAAACTT+CGG 0.432804 1_1:+27418636 Msa0016540:CDS
CAATCATTAGGTGTTTGCCT+TGG 0.433346 1_1:+27422187 Msa0016540:three_prime_UTR
GAAGATTTGTGAAAACGGTT+CGG 0.436024 1_1:+27417073 Msa0016540:CDS
GTCGAGTCTGTCTCTGATAA+TGG 0.436999 1_1:+27418097 Msa0016540:CDS
GATAATGCTGTCAAAGTTGA+AGG 0.440799 1_1:+27418295 Msa0016540:CDS
AGTTCAGAAAGGACTATTAC+CGG 0.442385 1_1:+27420965 Msa0016540:CDS
TTCAATTGAAGCTGAAACTT+CGG 0.444181 1_1:+27418720 Msa0016540:CDS
TTCGATGCAAAGCAATCATT+AGG 0.446729 1_1:+27422175 Msa0016540:three_prime_UTR
TTCAGCTTCAATAGAGGTCT+CGG 0.449069 1_1:-27418749 None:intergenic
GATAATCGCGATGTTGAATT+GGG 0.450704 1_1:+27417587 Msa0016540:CDS
TAAACAATGCAATTTCTGTC+GGG 0.451272 1_1:+27419310 Msa0016540:CDS
TTTGTAAGCTCTTTCAATGA+AGG 0.452055 1_1:-27421073 None:intergenic
GGACAAGAGTGATCGTGAAT+TGG 0.455985 1_1:+27417277 Msa0016540:CDS
TCGTGAAGAAGAAGTGAAGG+TGG 0.464915 1_1:+27417196 Msa0016540:CDS
TGAAAACGGTGGAGAATTGA+AGG 0.465384 1_1:+27417139 Msa0016540:CDS
TGTACCACAGCCTTGGAAGC+AGG 0.465437 1_1:-27421183 None:intergenic
AAGCGCAATGACAGCGGAGG+AGG 0.466090 1_1:+27416743 None:intergenic
GCCATTCTATTGGTTGGTCC+GGG 0.466811 1_1:+27418927 Msa0016540:CDS
TCACTTTCACCTTCATCAGC+AGG 0.469730 1_1:-27418211 None:intergenic
GTATCTGCATTAACATCAAC+CGG 0.473802 1_1:-27417959 None:intergenic
TGTCGTGGATGCACAGGACA+TGG 0.474717 1_1:+27418885 Msa0016540:CDS
TCTTCCTCCTTTGTTCTCGC+AGG 0.476099 1_1:-27421333 None:intergenic
GAGAAAAGAGCAAAGAAGAA+GGG 0.479788 1_1:+27421795 Msa0016540:CDS
TCAAGTTACAGACTTTGAAA+AGG 0.489986 1_1:+27419931 Msa0016540:CDS
CACAGAGCATTGTAATGGTA+AGG 0.495770 1_1:+27416869 Msa0016540:CDS
CGATGTTGTTGTTGCTGACG+TGG 0.495959 1_1:+27417256 Msa0016540:CDS
CAAAGCTGAAGGAAAAGAAA+AGG 0.496256 1_1:+27421403 Msa0016540:CDS
AAATGATTTGGATAAGGTAC+CGG 0.496598 1_1:+27418036 Msa0016540:CDS
GATGGACGAACGCTTAATCC+TGG 0.498662 1_1:+27421027 Msa0016540:CDS
TTAAACAATGCAATTTCTGT+CGG 0.499085 1_1:+27419309 Msa0016540:CDS
GAAGTTTGAGCTTCAACTGA+AGG 0.499445 1_1:-27418772 None:intergenic
GCTTTCGTGATCTTTAGATT+CGG 0.500492 1_1:-27417414 None:intergenic
CGAAATTCGAGCTGAAAGCC+TGG 0.501002 1_1:+27419035 Msa0016540:CDS
ACAAGAAGAGAGAGCTGCTA+GGG 0.501119 1_1:+27419230 Msa0016540:CDS
CTCTGATAATGGTTTGGCAG+AGG 0.502587 1_1:+27418108 Msa0016540:CDS
TAAGCTCTTTCAATGAAGGC+AGG 0.506060 1_1:-27421069 None:intergenic
AGTTGAACCAGCTGAGAAGA+AGG 0.506135 1_1:+27417502 Msa0016540:CDS
TCATTAGGTGTTTGCCTTGG+GGG 0.506788 1_1:+27422190 Msa0016540:three_prime_UTR
AGCTGAGCCTTCAACAGAAA+CGG 0.510854 1_1:+27418399 Msa0016540:CDS
AGAAGGTAATCAAGTGGATG+AGG 0.511050 1_1:+27419860 Msa0016540:CDS
CACCGATGTCGTGGATGCAC+AGG 0.512779 1_1:+27418879 Msa0016540:CDS
GGAGCGCTTATGTGTTGATC+AGG 0.515142 1_1:+27420805 Msa0016540:CDS
AACGGTTGATGTCGTTGAGC+GGG 0.518462 1_1:+27417046 Msa0016540:CDS
TGCGAGAACAAAGGAGGAAG+AGG 0.519389 1_1:+27421335 Msa0016540:CDS
TTCACCTTCACCGCCTTCGA+CGG 0.520919 1_1:-27416817 None:intergenic
TCAATGAGACTGCAAGAACT+AGG 0.522673 1_1:+27420758 Msa0016540:CDS
CAAATCCAAACGACAAGAGA+TGG 0.523125 1_1:+27419260 Msa0016540:CDS
AAAGGATGAACCTGCTTCCA+AGG 0.524649 1_1:+27421173 Msa0016540:CDS
TGCCGAAAAGGCCCAACAAA+GGG 0.525398 1_1:+27421476 Msa0016540:CDS
TAATGGTTTGGCAGAGGTTG+AGG 0.525866 1_1:+27418114 Msa0016540:CDS
ACCACGGTTGCGAATAGCCA+TGG 0.526287 1_1:-27422006 None:intergenic
GAGGAGGCCATTCTATTGGT+TGG 0.527307 1_1:+27418921 Msa0016540:CDS
GTAATAAATTATTGTGATTG+TGG 0.527555 1_1:+27422402 Msa0016540:three_prime_UTR
GAATTTGTGATTGTTGAAAA+CGG 0.528063 1_1:+27417125 Msa0016540:CDS
ATCATGGGCGGCTCTTCACC+AGG 0.529500 1_1:-27421045 None:intergenic
GGCGCCGTCGAAGGCGGTGA+AGG 0.530333 1_1:+27416813 Msa0016540:CDS
CTGTACTCCTGGTGTTGCAC+CGG 0.531472 1_1:-27420984 None:intergenic
TAAATTATTGTGATTGTGGT+GGG 0.531904 1_1:+27422406 Msa0016540:three_prime_UTR
GTTGAATTCGTCTCTTACCA+CGG 0.532422 1_1:-27422022 None:intergenic
TTAGAGGCAGAGTTTCATGC+TGG 0.534107 1_1:-27419471 None:intergenic
GTTGACGCTGCTAACGGTAA+AGG 0.535203 1_1:+27416954 Msa0016540:CDS
GACGACGTCGGCGCCGTCGA+AGG 0.536151 1_1:+27416804 Msa0016540:CDS
TCTGCTGACTTCTTCTCTGA+AGG 0.536447 1_1:-27421258 None:intergenic
TAAAGGTGGAGTAGCGGTAG+AGG 0.536539 1_1:+27416971 Msa0016540:CDS
GGATGAAGTTGAACCTTCAA+AGG 0.536650 1_1:+27418360 Msa0016540:CDS
ACTATTACCGGTGCAACACC+AGG 0.537211 1_1:+27420977 Msa0016540:CDS
AGGAGCACAGGGGAAGAAAG+AGG 0.538909 1_1:+27420778 Msa0016540:CDS
GACGAATTCAACCATGGATG+TGG 0.539438 1_1:+27422033 Msa0016540:CDS
AGCCGAACCTTCAACTGAAA+CGG 0.539734 1_1:+27418435 Msa0016540:CDS
TTCTACGGATGCGGTGGAGG+TGG 0.540207 1_1:+27417367 Msa0016540:CDS
ACCTTCAACTGAAACGGCGG+TGG 0.542771 1_1:+27418441 Msa0016540:CDS
TTGTGATAATGCAGATGAGA+AGG 0.542927 1_1:+27417931 Msa0016540:CDS
CAGCAGATCGAGTTTCTCGT+TGG 0.543874 1_1:+27421274 Msa0016540:CDS
GAATTGGAAAGTAAAGTTGA+TGG 0.544173 1_1:+27417476 Msa0016540:CDS
TGATTCTACGGATGCGGTGG+AGG 0.544593 1_1:+27417364 Msa0016540:CDS
AAGAAGAAATACGAGGAAGA+AGG 0.546407 1_1:+27419843 Msa0016540:CDS
TGCTGATGACACTCGTCAAG+AGG 0.552097 1_1:+27419902 Msa0016540:CDS
ATTTCTGTTAACGGCAATGT+CGG 0.552571 1_1:+27416894 Msa0016540:CDS
TGAAACTCTGACAAGAACTC+TGG 0.552572 1_1:+27421890 Msa0016540:CDS
ACCCGGACCAACCAATAGAA+TGG 0.552856 1_1:-27418928 None:intergenic
ACTGCAAGAACTAGGAGCAC+AGG 0.554158 1_1:+27420766 Msa0016540:CDS
AAGCATTGAAGAGCAAACTA+AGG 0.554579 1_1:+27419603 Msa0016540:CDS
GAAAAGGCAATTGCATGAGA+AGG 0.554771 1_1:+27419947 Msa0016540:CDS
CTCTGATAATGGTTTGGAGA+AGG 0.557027 1_1:+27418069 Msa0016540:CDS
TTATCAGAGACAGACTCAAC+CGG 0.558273 1_1:-27418055 None:intergenic
ATCATTAGGTGTTTGCCTTG+GGG 0.559846 1_1:+27422189 Msa0016540:three_prime_UTR
TTTACCGTTAGCAGCGTCAA+CGG 0.560175 1_1:-27416952 None:intergenic
TTCGACGGCGCCGACGTCGT+CGG 0.560203 1_1:-27416802 None:intergenic
GAGTGAAGCCGAACCTTCAA+CGG 0.561675 1_1:+27418465 Msa0016540:CDS
CTTGATTATACTCTTTACGA+AGG 0.561786 1_1:-27419191 None:intergenic
GAAGAGAAGATTTGTGAAAA+CGG 0.561949 1_1:+27417068 Msa0016540:CDS
GCAGATCGAGTTTCTCGTTG+GGG 0.561989 1_1:+27421276 Msa0016540:CDS
AAGATCACAGAGCATTGTAA+TGG 0.562627 1_1:+27416864 Msa0016540:CDS
AGCATCTGCCACTGATGCTG+TGG 0.563886 1_1:+27418846 Msa0016540:CDS
GCCTTCAACAGAAACGGCGG+TGG 0.564162 1_1:+27418405 Msa0016540:CDS
TGCTGATTCTACGGATGCGG+TGG 0.564790 1_1:+27417361 Msa0016540:CDS
ACCTCAGATGTAACAACAGA+AGG 0.565604 1_1:-27418235 None:intergenic
ACATGGGCTCTGAGGTGGTG+AGG 0.566686 1_1:+27418902 Msa0016540:CDS
AGACATTAAAGAGGAGAGTG+AGG 0.569567 1_1:+27418261 Msa0016540:CDS
AAACAATGCAATTTCTGTCG+GGG 0.569837 1_1:+27419311 Msa0016540:CDS
GAAGCTGATTCACTCACTCC+AGG 0.570410 1_1:-27417551 None:intergenic
GAATTCAACCATGGATGTGG+TGG 0.570422 1_1:+27422036 Msa0016540:CDS
GTTACCGTTGACGCTGCTAA+CGG 0.571049 1_1:+27416948 Msa0016540:CDS
TCAATGAAGGCAGGAATCAT+GGG 0.571166 1_1:-27421060 None:intergenic
TTGATTATACTCTTTACGAA+GGG 0.572186 1_1:-27419190 None:intergenic
GGAAGAAGAAGCAAAGCTGA+AGG 0.572743 1_1:+27421392 Msa0016540:CDS
TGAAGAAGTTGCTGATTCTA+CGG 0.573748 1_1:+27417352 Msa0016540:CDS
TGAACCTGCTTCCAAGGCTG+TGG 0.577224 1_1:+27421179 Msa0016540:CDS
TTAACAGTAACAGGTTCTGT+TGG 0.578014 1_1:-27421147 None:intergenic
GGCTGAACAAGCGAGGAAGA+AGG 0.578105 1_1:+27421371 Msa0016540:CDS
TGGGCTCTGAGGTGGTGAGG+AGG 0.578182 1_1:+27418905 Msa0016540:CDS
TAATGGTTTGGAGAAGGTAC+CGG 0.578454 1_1:+27418075 Msa0016540:CDS
TTCAGTTGAAACTGAGACTG+CGG 0.578726 1_1:+27418600 Msa0016540:CDS
ATAAATTATTGTGATTGTGG+TGG 0.579033 1_1:+27422405 Msa0016540:three_prime_UTR
GCAGTCTCAGTTTCAACTGA+AGG 0.579813 1_1:-27418598 None:intergenic
CTGCAAGAACTAGGAGCACA+GGG 0.581459 1_1:+27420767 Msa0016540:CDS
TCAATTCACAAAACAAAGCA+AGG 0.582239 1_1:+27421971 Msa0016540:CDS
TTGTCATCATCATCGTATCT+CGG 0.583706 1_1:-27418952 None:intergenic
GATTCGTGAAGAAGAAGTGA+AGG 0.584646 1_1:+27417193 Msa0016540:CDS
ACTTTGACAGCATTATCTGA+AGG 0.585040 1_1:-27418289 None:intergenic
GGAAATTGAGAAAGCTAAGG+AGG 0.585444 1_1:+27421431 Msa0016540:CDS
CATCATCGTATCTCGGAACC+CGG 0.585579 1_1:-27418945 None:intergenic
TGCAGATGAGAAGGAAACTC+CGG 0.585869 1_1:+27417940 Msa0016540:CDS
GAAGAATGATGAGTTCAGAA+AGG 0.586168 1_1:+27420954 Msa0016540:CDS
TGAGGTGAGAGACATTAAAG+AGG 0.588078 1_1:+27418252 Msa0016540:CDS
GACGTCGGCGCCGTCGAAGG+CGG 0.589960 1_1:+27416807 Msa0016540:CDS
TGCATCTGCCACCGATGTCG+TGG 0.590159 1_1:+27418870 Msa0016540:CDS
TGAAGGTTCAGCTTCAATAG+AGG 0.590769 1_1:-27418755 None:intergenic
AACTTCTCTATCGACAACAT+TGG 0.592698 1_1:-27418572 None:intergenic
GGATCAACACGGTGTCGTTG+AGG 0.593024 1_1:+27417220 Msa0016540:CDS
ACAGGGGAAGAAAGAGGACG+TGG 0.593488 1_1:+27420784 Msa0016540:CDS
CGAACCTTCAACGGAACTAG+TGG 0.593666 1_1:+27418474 Msa0016540:CDS
TGAAGAAGAAGTGAAGGTGG+AGG 0.594488 1_1:+27417199 Msa0016540:CDS
GAAAGCGAAAATCTTTGGGA+TGG 0.595131 1_1:+27417431 Msa0016540:CDS
GCTTTGAAATGAAGATCTCA+AGG 0.595326 1_1:-27422114 None:intergenic
ATCAGCAACTTCTTCAACAG+CGG 0.597246 1_1:-27417345 None:intergenic
CCACGGTTGCGAATAGCCAT+GGG 0.597835 1_1:-27422005 None:intergenic
ATTAGAACCCACCACATCCA+TGG 0.597877 1_1:-27422044 None:intergenic
GGACGAGTCTGATGAAGAGA+AGG 0.598518 1_1:+27421299 Msa0016540:CDS
GTCGTGGATGCACAGGACAT+GGG 0.598942 1_1:+27418886 Msa0016540:CDS
GAAGCTCAAACTTCAGCTGA+AGG 0.599070 1_1:+27418781 Msa0016540:CDS
TACAAGAAGAGAGAGCTGCT+AGG 0.599500 1_1:+27419229 Msa0016540:CDS
CTGTGCATCCACGACATCGG+TGG 0.599757 1_1:-27418878 None:intergenic
TGATGCTGAAGTGAGTGAAT+CGG 0.600354 1_1:+27417871 Msa0016540:CDS
TTCAGGAAGCGCAATGACAG+CGG 0.600797 1_1:+27416737 None:intergenic
CGAGGAAGAAGGTAATCAAG+TGG 0.601038 1_1:+27419854 Msa0016540:CDS
AGTTGCTGATTCTACGGATG+CGG 0.604860 1_1:+27417358 Msa0016540:CDS
TTCTAACGGTGAAACGACAA+CGG 0.609310 1_1:+27417028 Msa0016540:CDS
TGAGGTGAGTGAATGCATCA+AGG 0.610932 1_1:+27418132 Msa0016540:CDS
TATATGTAATAAATATGTAA+GGG 0.611508 1_1:-27422220 None:intergenic
TACTCAAAATGATTTAGAGA+AGG 0.612379 1_1:+27417979 Msa0016540:CDS
ATGCCGAAAAGGCCCAACAA+AGG 0.614179 1_1:+27421475 Msa0016540:CDS
ACATGCTCTTCAACAAGTAG+AGG 0.615781 1_1:+27418993 Msa0016540:CDS
TGCACAGGACATGGGCTCTG+AGG 0.616154 1_1:+27418894 Msa0016540:CDS
AGTTACTACTGAAGATGCTG+TGG 0.616914 1_1:+27421830 Msa0016540:CDS
ACCTGTTACTGTTAATACAA+AGG 0.617247 1_1:+27421155 Msa0016540:CDS
CAGATCGAGTTTCTCGTTGG+GGG 0.617393 1_1:+27421277 Msa0016540:CDS
GTTATTTCCCATATAAAACA+AGG 0.618146 1_1:-27422087 None:intergenic
TGTCGGGGATATAGATAGCA+AGG 0.619863 1_1:+27419326 Msa0016540:CDS
GTCCTGTGCATCCACGACAT+CGG 0.620547 1_1:-27418881 None:intergenic
AGATGCATCCACAGCATCAG+TGG 0.621066 1_1:-27418854 None:intergenic
ACACCAGAACCTGCTGATGA+AGG 0.621455 1_1:+27418202 Msa0016540:CDS
TAGCAACGAATCTGAAGTGA+CGG 0.622394 1_1:+27416998 Msa0016540:CDS
AAGAGTGATCGTGAATTGGA+AGG 0.623827 1_1:+27417281 Msa0016540:CDS
AAATCTGCAACATCAACAGA+AGG 0.624188 1_1:-27418544 None:intergenic
TAATGAACCTGCGAGAACAA+AGG 0.625399 1_1:+27421326 Msa0016540:CDS
AAGCTAAGGAGGCACTGCAA+AGG 0.626684 1_1:+27421442 Msa0016540:CDS
AGAGGAAATTGAGAAAGCTA+AGG 0.627172 1_1:+27421428 Msa0016540:CDS
AACGATCGGATCTGAAAGAA+CGG 0.627370 1_1:-27416928 None:intergenic
GTGACGGTTATGAATTCTAA+CGG 0.628599 1_1:+27417014 Msa0016540:CDS
CCCATGGCTATTCGCAACCG+TGG 0.629628 1_1:+27422005 Msa0016540:CDS
GCAGCGTCAACGGTAACGAT+CGG 0.631102 1_1:-27416942 None:intergenic
GAACAGAGTTAAAGAGATCG+AGG 0.632968 1_1:+27417310 Msa0016540:CDS
CAACGGTTGATGTCGTTGAG+CGG 0.634074 1_1:+27417045 Msa0016540:CDS
GCTTAGAAGTAATCTCCTGA+AGG 0.634976 1_1:+27419797 Msa0016540:CDS
AGATCGAGTTTCTCGTTGGG+GGG 0.635906 1_1:+27421278 Msa0016540:CDS
AGGAAGCGCAATGACAGCGG+AGG 0.636017 1_1:+27416740 None:intergenic
TTTGTGATTGTTGAAAACGG+TGG 0.637026 1_1:+27417128 Msa0016540:CDS
GGTGGTTGATTCTGATGCGG+TGG 0.639793 1_1:+27417385 Msa0016540:CDS
GACGCTGCTAACGGTAAAGG+TGG 0.640048 1_1:+27416957 Msa0016540:CDS
GGATGTTGAATTCGAAACCG+TGG 0.641156 1_1:+27417847 Msa0016540:CDS
AGAATTGAAGGAATGTGCGG+TGG 0.642858 1_1:+27417151 Msa0016540:CDS
GAAGGAAAAGAAAAGGCTAG+AGG 0.644112 1_1:+27421410 Msa0016540:CDS
AATGTGATTCCTGTTGATGT+CGG 0.646932 1_1:+27418157 Msa0016540:CDS
ATTGTTTAATCTATTCATGG+TGG 0.647633 1_1:-27419295 None:intergenic
ACCTTCTGTTGTTACATCTG+AGG 0.648343 1_1:+27418234 Msa0016540:CDS
CAAGGTAAAAGCTTTACCCA+TGG 0.652268 1_1:+27421989 Msa0016540:CDS
TCTTAAAGGCTGAACAAGCG+AGG 0.652710 1_1:+27421364 Msa0016540:CDS
TGTATCAGAGACAGACTCAA+CGG 0.654537 1_1:-27418005 None:intergenic
AAGTGGATGAGGTTATGGCT+CGG 0.657227 1_1:+27419871 Msa0016540:CDS
AATTCAACCATGGATGTGGT+GGG 0.658178 1_1:+27422037 Msa0016540:CDS
TGAACCTGCGAGAACAAAGG+AGG 0.658556 1_1:+27421329 Msa0016540:CDS
TTATCAGAGACAGACTCGAC+CGG 0.663571 1_1:-27418094 None:intergenic
TCCGATAACACCGACGACGT+CGG 0.667668 1_1:+27416792 Msa0016540:CDS
GGAGGTGGTTGATTCTGATG+CGG 0.669215 1_1:+27417382 Msa0016540:CDS
CGAACCTTCAACTGAAACGG+CGG 0.674110 1_1:+27418438 Msa0016540:CDS
TTGATGTCGGCGAATCGGAG+AGG 0.675225 1_1:+27418170 Msa0016540:CDS
CAGAGTTAAAGAGATCGAGG+AGG 0.676291 1_1:+27417313 Msa0016540:CDS
TAACGGTAAAGGTGGAGTAG+CGG 0.679708 1_1:+27416965 Msa0016540:CDS
ACTCACTTCAGCATCAACCA+CGG 0.682834 1_1:-27417864 None:intergenic
TCAGCTTGAGAAACCAGTTG+AGG 0.692737 1_1:+27421923 Msa0016540:CDS
GTGAAGGTGGAGGATCAACA+CGG 0.692928 1_1:+27417209 Msa0016540:CDS
ATGAAGGCAGGAATCATGGG+CGG 0.695047 1_1:-27421057 None:intergenic
AGCAGCAAAGAAGAAATACG+AGG 0.695748 1_1:+27419836 Msa0016540:CDS
GAACAATGTAGTGCATAGTG+AGG 0.698883 1_1:+27418516 Msa0016540:CDS
ACAGGACATGGGCTCTGAGG+TGG 0.700930 1_1:+27418897 Msa0016540:CDS
GTAAGAGACGAATTCAACCA+TGG 0.703137 1_1:+27422027 Msa0016540:CDS
AAACTATTGAAGCAAAATCG+CGG 0.718300 1_1:+27419523 Msa0016540:CDS
TGAGCCTTCAACAGAAACGG+CGG 0.719702 1_1:+27418402 Msa0016540:CDS
TTTCAGCTCGAATTTCGTCG+CGG 0.729931 1_1:-27419029 None:intergenic
TGGAGAATTGAAGGAATGTG+CGG 0.744091 1_1:+27417148 Msa0016540:CDS
GCAACACCAGGAGTACAGTG+AGG 0.757234 1_1:+27420989 Msa0016540:CDS
TGCAAGAACTAGGAGCACAG+GGG 0.777871 1_1:+27420768 Msa0016540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAATAAAAA+AGG - chr1_1:27420496-27420515 None:intergenic 0.0%
!! TTAAACTAAAATTCATTTAT+CGG + chr1_1:27421720-27421739 Msa0016540:intron 10.0%
!! TATATGTAATAAATATGTAA+GGG - chr1_1:27422223-27422242 None:intergenic 10.0%
!! ATATATGTAATAAATATGTA+AGG - chr1_1:27422224-27422243 None:intergenic 10.0%
!! TAATTTATTACCATAATAAT+TGG - chr1_1:27422393-27422412 None:intergenic 10.0%
!! ATAAAAAATAAAAAAGGTTG+AGG - chr1_1:27420490-27420509 None:intergenic 15.0%
!! TACAATTGTTGAAAATGATT+TGG + chr1_1:27418024-27418043 Msa0016540:CDS 20.0%
!!! TAGAATGATATTAGTTTGAT+TGG + chr1_1:27419088-27419107 Msa0016540:intron 20.0%
!!! TTTGAATGATTAATTTGTTC+AGG + chr1_1:27419167-27419186 Msa0016540:intron 20.0%
!! GTTAGTTAATACAAAAGATA+CGG - chr1_1:27419682-27419701 None:intergenic 20.0%
!!! CTCAGTTAGTTTTTTTTTTT+TGG - chr1_1:27419718-27419737 None:intergenic 20.0%
!! AAAAAAGGAATGAAATAGAT+AGG - chr1_1:27419987-27420006 None:intergenic 20.0%
!!! AATCTATTCTTTGATTGTTT+TGG + chr1_1:27420073-27420092 Msa0016540:intron 20.0%
!! TTAAATTCTTTAATCCACAA+AGG - chr1_1:27420359-27420378 None:intergenic 20.0%
!! GATTAAAGAATTTAATGCTT+AGG + chr1_1:27420364-27420383 Msa0016540:intron 20.0%
!!! TTAATTTCTTTTGTTGTTCA+GGG - chr1_1:27421125-27421144 None:intergenic 20.0%
!! GAATCACATTATAACATAAA+CGG - chr1_1:27421616-27421635 None:intergenic 20.0%
!! CAGTATAAAAATAGTTATCA+TGG - chr1_1:27421679-27421698 None:intergenic 20.0%
!! TAGAAGCAAAAAAATTGTAA+AGG - chr1_1:27422272-27422291 None:intergenic 20.0%
!!! ATTTTTTTGCTTCTAGTTTT+TGG + chr1_1:27422277-27422296 Msa0016540:three_prime_UTR 20.0%
!! GTAATAAATTATTGTGATTG+TGG + chr1_1:27422402-27422421 Msa0016540:three_prime_UTR 20.0%
! GAATTTGTGATTGTTGAAAA+CGG + chr1_1:27417125-27417144 Msa0016540:CDS 25.0%
!! AGCTGAGAAAAATGAAATTT+TGG + chr1_1:27417772-27417791 Msa0016540:CDS 25.0%
! TACTCAAAATGATTTAGAGA+AGG + chr1_1:27417979-27417998 Msa0016540:CDS 25.0%
!! TGTTGAAAATGATTTGGATA+AGG + chr1_1:27418030-27418049 Msa0016540:CDS 25.0%
! TGAAGTTTCAATTGATGTTT+CGG - chr1_1:27418668-27418687 None:intergenic 25.0%
! TTCAGCTTCAATTGAAATTT+CGG - chr1_1:27418698-27418717 None:intergenic 25.0%
! TTGATTATACTCTTTACGAA+GGG - chr1_1:27419193-27419212 None:intergenic 25.0%
! ATTGTTTAATCTATTCATGG+TGG - chr1_1:27419298-27419317 None:intergenic 25.0%
! TGCATTGTTTAATCTATTCA+TGG - chr1_1:27419301-27419320 None:intergenic 25.0%
! TTAAACAATGCAATTTCTGT+CGG + chr1_1:27419309-27419328 Msa0016540:CDS 25.0%
!! TTATTTTCAGATTCGAAACA+TGG + chr1_1:27419438-27419457 Msa0016540:intron 25.0%
!!! AATTGCTTTTCTTCTTTTAG+AGG - chr1_1:27419490-27419509 None:intergenic 25.0%
! TTTGCTTCAATAGTTTGATT+TGG - chr1_1:27419519-27419538 None:intergenic 25.0%
! GTCTAATATTATTGCAAAAC+AGG + chr1_1:27419552-27419571 Msa0016540:CDS 25.0%
! CATTATATTTCCCGAATTAA+TGG + chr1_1:27419647-27419666 Msa0016540:intron 25.0%
! GTAGTTAATTCCATTAATTC+GGG - chr1_1:27419660-27419679 None:intergenic 25.0%
! GGTAGTTAATTCCATTAATT+CGG - chr1_1:27419661-27419680 None:intergenic 25.0%
!!! TACATGGTTTTAATTTCCTT+AGG - chr1_1:27420237-27420256 None:intergenic 25.0%
! AAAATATTATCTGCTGAACT+AGG + chr1_1:27420527-27420546 Msa0016540:intron 25.0%
!! TGTACAGAGCAAATATTTTT+GGG + chr1_1:27420721-27420740 Msa0016540:intron 25.0%
!! TACTCGTTTCAAGTATAAAA+AGG - chr1_1:27420835-27420854 None:intergenic 25.0%
!!! TAATTTCTTTTGTTGTTCAG+GGG - chr1_1:27421124-27421143 None:intergenic 25.0%
!!! GTTAATTTCTTTTGTTGTTC+AGG - chr1_1:27421126-27421145 None:intergenic 25.0%
! GGTCAATTATCACATTTAAT+GGG - chr1_1:27421658-27421677 None:intergenic 25.0%
! TGGTCAATTATCACATTTAA+TGG - chr1_1:27421659-27421678 None:intergenic 25.0%
!! GTTATTTCCCATATAAAACA+AGG - chr1_1:27422090-27422109 None:intergenic 25.0%
!! ACATATAGAAGCAATTCTTT+TGG + chr1_1:27422244-27422263 Msa0016540:three_prime_UTR 25.0%
! ATAAATTATTGTGATTGTGG+TGG + chr1_1:27422405-27422424 Msa0016540:three_prime_UTR 25.0%
GGTAAGGAAATTTCTGTTAA+CGG + chr1_1:27416885-27416904 Msa0016540:CDS 30.0%
GAAGAGAAGATTTGTGAAAA+CGG + chr1_1:27417068-27417087 Msa0016540:CDS 30.0%
GAATTGGAAAGTAAAGTTGA+TGG + chr1_1:27417476-27417495 Msa0016540:CDS 30.0%
TGAAAATCGTGATGTTCAAT+TGG + chr1_1:27417718-27417737 Msa0016540:CDS 30.0%
! AAATGATTTGGATAAGGTAC+CGG + chr1_1:27418036-27418055 Msa0016540:CDS 30.0%
AGATTAAAAACGATGCAGTT+GGG + chr1_1:27418338-27418357 Msa0016540:CDS 30.0%
! TTCAGCTTCAACTGAATTTT+CGG - chr1_1:27418632-27418651 None:intergenic 30.0%
TTCAATTGAAGCTGAAACTT+CGG + chr1_1:27418720-27418739 Msa0016540:CDS 30.0%
CTTGATTATACTCTTTACGA+AGG - chr1_1:27419194-27419213 None:intergenic 30.0%
TAAACAATGCAATTTCTGTC+GGG + chr1_1:27419310-27419329 Msa0016540:CDS 30.0%
CAAATCGTGATAAATATCTC+TGG - chr1_1:27419372-27419391 None:intergenic 30.0%
GAGATGTTGATACAACAAAA+AGG - chr1_1:27419406-27419425 None:intergenic 30.0%
AAACTATTGAAGCAAAATCG+CGG + chr1_1:27419523-27419542 Msa0016540:CDS 30.0%
! TCAAGTTACAGACTTTGAAA+AGG + chr1_1:27419931-27419950 Msa0016540:CDS 30.0%
TTGATACTAATGCCAAATCT+AGG + chr1_1:27420154-27420173 Msa0016540:intron 30.0%
TGATACTAATGCCAAATCTA+GGG + chr1_1:27420155-27420174 Msa0016540:intron 30.0%
AGTATTACTTCATGAGTACA+TGG - chr1_1:27420253-27420272 None:intergenic 30.0%
CTGAAAATGAGATATCCATT+GGG - chr1_1:27420399-27420418 None:intergenic 30.0%
TCAGGATTACTGTATTATCT+AGG + chr1_1:27420415-27420434 Msa0016540:intron 30.0%
ACAGTATGGTAAACAAAACT+AGG - chr1_1:27420704-27420723 None:intergenic 30.0%
AATATTTGCTCTGTACAGTA+TGG - chr1_1:27420718-27420737 None:intergenic 30.0%
! CTGTACAGAGCAAATATTTT+TGG + chr1_1:27420720-27420739 Msa0016540:intron 30.0%
TTTGTAAGCTCTTTCAATGA+AGG - chr1_1:27421076-27421095 None:intergenic 30.0%
ACCTGTTACTGTTAATACAA+AGG + chr1_1:27421155-27421174 Msa0016540:CDS 30.0%
TCCTTTGTATTAACAGTAAC+AGG - chr1_1:27421159-27421178 None:intergenic 30.0%
!!! CTTTGTTTTGTGAATTGAGA+TGG - chr1_1:27421969-27421988 None:intergenic 30.0%
TCAATTCACAAAACAAAGCA+AGG + chr1_1:27421971-27421990 Msa0016540:CDS 30.0%
!!! TATTGCTGCCTTGTTTTATA+TGG + chr1_1:27422079-27422098 Msa0016540:CDS 30.0%
!!! ATTGCTGCCTTGTTTTATAT+GGG + chr1_1:27422080-27422099 Msa0016540:CDS 30.0%
AGATCTTCATTTCAAAGCTT+TGG + chr1_1:27422119-27422138 Msa0016540:CDS 30.0%
!!! TTTCAAAGCTTTGGTTTTTG+AGG + chr1_1:27422128-27422147 Msa0016540:CDS 30.0%
!!! CGAAGCAAGTTTTTTAACTT+TGG - chr1_1:27422159-27422178 None:intergenic 30.0%
!! GTTTCTGATGTGATTTTAAC+TGG + chr1_1:27422351-27422370 Msa0016540:three_prime_UTR 30.0%
!! AAGATCACAGAGCATTGTAA+TGG + chr1_1:27416864-27416883 Msa0016540:CDS 35.0%
ATTTCTGTTAACGGCAATGT+CGG + chr1_1:27416894-27416913 Msa0016540:CDS 35.0%
GTGACGGTTATGAATTCTAA+CGG + chr1_1:27417014-27417033 Msa0016540:CDS 35.0%
GAAGATTTGTGAAAACGGTT+CGG + chr1_1:27417073-27417092 Msa0016540:CDS 35.0%
AAGATTTGTGAAAACGGTTC+GGG + chr1_1:27417074-27417093 Msa0016540:CDS 35.0%
TTTGTGATTGTTGAAAACGG+TGG + chr1_1:27417128-27417147 Msa0016540:CDS 35.0%
!! TGAAGAAGTTGCTGATTCTA+CGG + chr1_1:27417352-27417371 Msa0016540:CDS 35.0%
GCTTTCGTGATCTTTAGATT+CGG - chr1_1:27417417-27417436 None:intergenic 35.0%
ATCACGAAAGCGAAAATCTT+TGG + chr1_1:27417426-27417445 Msa0016540:CDS 35.0%
TCACGAAAGCGAAAATCTTT+GGG + chr1_1:27417427-27417446 Msa0016540:CDS 35.0%
CGAAATTCGTGATGTTGAAT+TGG + chr1_1:27417460-27417479 Msa0016540:CDS 35.0%
TGAGAAGAAGGAAAGTGAAT+TGG + chr1_1:27417514-27417533 Msa0016540:CDS 35.0%
TGATAATCGCGATGTTGAAT+TGG + chr1_1:27417586-27417605 Msa0016540:CDS 35.0%
GATAATCGCGATGTTGAATT+GGG + chr1_1:27417587-27417606 Msa0016540:CDS 35.0%
CAGCTGAGAAAAACGAAATT+CGG + chr1_1:27417825-27417844 Msa0016540:CDS 35.0%
AGCTGAGAAAAACGAAATTC+GGG + chr1_1:27417826-27417845 Msa0016540:CDS 35.0%
! GAAACTCCAGTTGATGTTAA+TGG + chr1_1:27417905-27417924 Msa0016540:CDS 35.0%
CAAACTCCATTAACATCAAC+TGG - chr1_1:27417914-27417933 None:intergenic 35.0%
! TTGTGATAATGCAGATGAGA+AGG + chr1_1:27417931-27417950 Msa0016540:CDS 35.0%
GTATCTGCATTAACATCAAC+CGG - chr1_1:27417962-27417981 None:intergenic 35.0%
AATGTGATTCCTGTTGATGT+CGG + chr1_1:27418157-27418176 Msa0016540:CDS 35.0%
ACTTTGACAGCATTATCTGA+AGG - chr1_1:27418292-27418311 None:intergenic 35.0%
GATAATGCTGTCAAAGTTGA+AGG + chr1_1:27418295-27418314 Msa0016540:CDS 35.0%
GAGATTAAAAACGATGCAGT+TGG + chr1_1:27418337-27418356 Msa0016540:CDS 35.0%
GATTAAAAACGATGCAGTTG+GGG + chr1_1:27418339-27418358 Msa0016540:CDS 35.0%
AAATCTGCAACATCAACAGA+AGG - chr1_1:27418547-27418566 None:intergenic 35.0%
AACTTCTCTATCGACAACAT+TGG - chr1_1:27418575-27418594 None:intergenic 35.0%
TTCAGTTGAAGCTGAAACTT+CGG + chr1_1:27418636-27418655 Msa0016540:CDS 35.0%
GAAGTTTCAGCTTCAATTGA+AGG - chr1_1:27418721-27418740 None:intergenic 35.0%
TTGTCATCATCATCGTATCT+CGG - chr1_1:27418955-27418974 None:intergenic 35.0%
AAACAATGCAATTTCTGTCG+GGG + chr1_1:27419311-27419330 Msa0016540:CDS 35.0%
!! AAGCATTGAAGAGCAAACTA+AGG + chr1_1:27419603-27419622 Msa0016540:CDS 35.0%
AAGAAGAAATACGAGGAAGA+AGG + chr1_1:27419843-27419862 Msa0016540:CDS 35.0%
TAATCAAGTGGATGAGGTTA+TGG + chr1_1:27419866-27419885 Msa0016540:CDS 35.0%
GTATTTCCCTCAAGGAAAAA+GGG - chr1_1:27420014-27420033 None:intergenic 35.0%
AGTATTTCCCTCAAGGAAAA+AGG - chr1_1:27420015-27420034 None:intergenic 35.0%
TTTCTACAGTATTTCCCTCA+AGG - chr1_1:27420022-27420041 None:intergenic 35.0%
TTGAGGGAAATACTGTAGAA+AGG + chr1_1:27420021-27420040 Msa0016540:intron 35.0%
GATACTAATGCCAAATCTAG+GGG + chr1_1:27420156-27420175 Msa0016540:intron 35.0%
! GTTCCAATACTAGCTTATAC+TGG + chr1_1:27420184-27420203 Msa0016540:intron 35.0%
AGACCAGTATAAGCTAGTAT+TGG - chr1_1:27420190-27420209 None:intergenic 35.0%
GTTGCTTGTAGAAATCTAGA+TGG + chr1_1:27420211-27420230 Msa0016540:intron 35.0%
TATTGAGTAGCTAGTGCAAA+AGG + chr1_1:27420277-27420296 Msa0016540:intron 35.0%
!! AAAAGGAATATGCTGCTTTG+TGG + chr1_1:27420294-27420313 Msa0016540:intron 35.0%
! GCATTTGTTGCGTACTTTAA+TGG - chr1_1:27420330-27420349 None:intergenic 35.0%
CCTGAAAATGAGATATCCAT+TGG - chr1_1:27420400-27420419 None:intergenic 35.0%
! CCAATGGATATCTCATTTTC+AGG + chr1_1:27420397-27420416 Msa0016540:intron 35.0%
TCTTACTGCGCTGTATTATT+AGG + chr1_1:27420868-27420887 Msa0016540:intron 35.0%
TAGGCGAATAAACTTGAATG+TGG + chr1_1:27420887-27420906 Msa0016540:intron 35.0%
GAAGAATGATGAGTTCAGAA+AGG + chr1_1:27420954-27420973 Msa0016540:CDS 35.0%
AGTTCAGAAAGGACTATTAC+CGG + chr1_1:27420965-27420984 Msa0016540:CDS 35.0%
TTAACAGTAACAGGTTCTGT+TGG - chr1_1:27421150-27421169 None:intergenic 35.0%
! TTACTTGTCTGGCTTATTTC+AGG - chr1_1:27421213-27421232 None:intergenic 35.0%
!!! GCTTTTTAGGTTTACTTGTC+TGG - chr1_1:27421224-27421243 None:intergenic 35.0%
CAAAGCTGAAGGAAAAGAAA+AGG + chr1_1:27421403-27421422 Msa0016540:CDS 35.0%
AGAGGAAATTGAGAAAGCTA+AGG + chr1_1:27421428-27421447 Msa0016540:CDS 35.0%
GAGAAAAGAGCAAAGAAGAA+GGG + chr1_1:27421795-27421814 Msa0016540:CDS 35.0%
!! GCTTTGAAATGAAGATCTCA+AGG - chr1_1:27422117-27422136 None:intergenic 35.0%
TTCGATGCAAAGCAATCATT+AGG + chr1_1:27422175-27422194 Msa0016540:three_prime_UTR 35.0%
AATCATTAGGTGTTTGCCTT+GGG + chr1_1:27422188-27422207 Msa0016540:three_prime_UTR 35.0%
!! CACAGAGCATTGTAATGGTA+AGG + chr1_1:27416869-27416888 Msa0016540:CDS 40.0%
AACGATCGGATCTGAAAGAA+CGG - chr1_1:27416931-27416950 None:intergenic 40.0%
! TAGCAACGAATCTGAAGTGA+CGG + chr1_1:27416998-27417017 Msa0016540:CDS 40.0%
TTCTAACGGTGAAACGACAA+CGG + chr1_1:27417028-27417047 Msa0016540:CDS 40.0%
TGAAAACGGTGGAGAATTGA+AGG + chr1_1:27417139-27417158 Msa0016540:CDS 40.0%
TGGAGAATTGAAGGAATGTG+CGG + chr1_1:27417148-27417167 Msa0016540:CDS 40.0%
GATTCGTGAAGAAGAAGTGA+AGG + chr1_1:27417193-27417212 Msa0016540:CDS 40.0%
AAGAGTGATCGTGAATTGGA+AGG + chr1_1:27417281-27417300 Msa0016540:CDS 40.0%
GAACAGAGTTAAAGAGATCG+AGG + chr1_1:27417310-27417329 Msa0016540:CDS 40.0%
ATCAGCAACTTCTTCAACAG+CGG - chr1_1:27417348-27417367 None:intergenic 40.0%
! GAAAGCGAAAATCTTTGGGA+TGG + chr1_1:27417431-27417450 Msa0016540:CDS 40.0%
TGATGCTGAAGTGAGTGAAT+CGG + chr1_1:27417871-27417890 Msa0016540:CDS 40.0%
TGTATCAGAGACAGACTCAA+CGG - chr1_1:27418008-27418027 None:intergenic 40.0%
TTATCAGAGACAGACTCAAC+CGG - chr1_1:27418058-27418077 None:intergenic 40.0%
GTTGAGTCTGTCTCTGATAA+TGG + chr1_1:27418058-27418077 Msa0016540:CDS 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG + chr1_1:27418063-27418082 Msa0016540:CDS 40.0%
!! CTCTGATAATGGTTTGGAGA+AGG + chr1_1:27418069-27418088 Msa0016540:CDS 40.0%
! TAATGGTTTGGAGAAGGTAC+CGG + chr1_1:27418075-27418094 Msa0016540:CDS 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG + chr1_1:27418063-27418082 Msa0016540:CDS 40.0%
ACCTTCTGTTGTTACATCTG+AGG + chr1_1:27418234-27418253 Msa0016540:CDS 40.0%
ACCTCAGATGTAACAACAGA+AGG - chr1_1:27418238-27418257 None:intergenic 40.0%
TGAGGTGAGAGACATTAAAG+AGG + chr1_1:27418252-27418271 Msa0016540:CDS 40.0%
AGACATTAAAGAGGAGAGTG+AGG + chr1_1:27418261-27418280 Msa0016540:CDS 40.0%
GGATGAAGTTGAACCTTCAA+AGG + chr1_1:27418360-27418379 Msa0016540:CDS 40.0%
GAACAATGTAGTGCATAGTG+AGG + chr1_1:27418516-27418535 Msa0016540:CDS 40.0%
TTCAGTTGAAACTGAGACTG+CGG + chr1_1:27418600-27418619 Msa0016540:CDS 40.0%
TTCAGCTTCAATAGAGGTCT+CGG - chr1_1:27418752-27418771 None:intergenic 40.0%
TGAAGGTTCAGCTTCAATAG+AGG - chr1_1:27418758-27418777 None:intergenic 40.0%
GAAGTTTGAGCTTCAACTGA+AGG - chr1_1:27418775-27418794 None:intergenic 40.0%
ACATGCTCTTCAACAAGTAG+AGG + chr1_1:27418993-27419012 Msa0016540:CDS 40.0%
!! AACTGCTTACCTTTTTAGCC+AGG - chr1_1:27419056-27419075 None:intergenic 40.0%
CAAATCCAAACGACAAGAGA+TGG + chr1_1:27419260-27419279 Msa0016540:CDS 40.0%
TGAATCCATCTCTTGTCGTT+TGG - chr1_1:27419268-27419287 None:intergenic 40.0%
! TTCAGCGATTACAGCTTTTG+AGG + chr1_1:27419760-27419779 Msa0016540:intron 40.0%
!! ACAGCTTTTGAGGAAGGAAT+TGG + chr1_1:27419770-27419789 Msa0016540:CDS 40.0%
GCTTAGAAGTAATCTCCTGA+AGG + chr1_1:27419797-27419816 Msa0016540:CDS 40.0%
AGCAGCAAAGAAGAAATACG+AGG + chr1_1:27419836-27419855 Msa0016540:CDS 40.0%
AGAAGGTAATCAAGTGGATG+AGG + chr1_1:27419860-27419879 Msa0016540:CDS 40.0%
GAAAAGGCAATTGCATGAGA+AGG + chr1_1:27419947-27419966 Msa0016540:CDS 40.0%
AGGAAAAAGGGCGGAAAAAA+AGG - chr1_1:27420002-27420021 None:intergenic 40.0%
TTGAGTGCTTATTCACAACG+AGG + chr1_1:27420113-27420132 Msa0016540:intron 40.0%
GTAGAAATCTAGATGGCCTA+AGG + chr1_1:27420218-27420237 Msa0016540:intron 40.0%
TTGCGTACTTTAATGGCACA+AGG - chr1_1:27420323-27420342 None:intergenic 40.0%
TCAATGAGACTGCAAGAACT+AGG + chr1_1:27420758-27420777 Msa0016540:CDS 40.0%
!! GCACTTACCAATTAGCTTTC+AGG + chr1_1:27420909-27420928 Msa0016540:intron 40.0%
AGGAGACTGCAAACTTTAGA+TGG + chr1_1:27421009-27421028 Msa0016540:CDS 40.0%
TCAATGAAGGCAGGAATCAT+GGG - chr1_1:27421063-27421082 None:intergenic 40.0%
TTCAATGAAGGCAGGAATCA+TGG - chr1_1:27421064-27421083 None:intergenic 40.0%
TAAGCTCTTTCAATGAAGGC+AGG - chr1_1:27421072-27421091 None:intergenic 40.0%
! GCAAGTTTTGCAGGCTTTTT+AGG - chr1_1:27421237-27421256 None:intergenic 40.0%
TTTGTTCTCGCAGGTTCATT+AGG - chr1_1:27421327-27421346 None:intergenic 40.0%
TAATGAACCTGCGAGAACAA+AGG + chr1_1:27421326-27421345 Msa0016540:CDS 40.0%
GAAGGAAAAGAAAAGGCTAG+AGG + chr1_1:27421410-27421429 Msa0016540:CDS 40.0%
GGAAATTGAGAAAGCTAAGG+AGG + chr1_1:27421431-27421450 Msa0016540:CDS 40.0%
! GAAAAAGCGTAATGCCGAAA+AGG + chr1_1:27421464-27421483 Msa0016540:CDS 40.0%
CTTATAGAGAGCCCTTTGTT+GGG - chr1_1:27421490-27421509 None:intergenic 40.0%
AGAAGCTGAGCAAAAAGAGA+AGG + chr1_1:27421518-27421537 Msa0016540:CDS 40.0%
ATGCCTATTTGTGCAGGAAA+GGG + chr1_1:27421773-27421792 Msa0016540:intron 40.0%
GGAGAAAAGAGCAAAGAAGA+AGG + chr1_1:27421794-27421813 Msa0016540:CDS 40.0%
AGTTACTACTGAAGATGCTG+TGG + chr1_1:27421830-27421849 Msa0016540:CDS 40.0%
TGAAACTCTGACAAGAACTC+TGG + chr1_1:27421890-27421909 Msa0016540:CDS 40.0%
CAAGGTAAAAGCTTTACCCA+TGG + chr1_1:27421989-27422008 Msa0016540:CDS 40.0%
GTTGAATTCGTCTCTTACCA+CGG - chr1_1:27422025-27422044 None:intergenic 40.0%
GTAAGAGACGAATTCAACCA+TGG + chr1_1:27422027-27422046 Msa0016540:CDS 40.0%
AATTCAACCATGGATGTGGT+GGG + chr1_1:27422037-27422056 Msa0016540:CDS 40.0%
CAATCATTAGGTGTTTGCCT+TGG + chr1_1:27422187-27422206 Msa0016540:three_prime_UTR 40.0%
ATCATTAGGTGTTTGCCTTG+GGG + chr1_1:27422189-27422208 Msa0016540:three_prime_UTR 40.0%
GCTTCTGCGACCAATTATTA+TGG + chr1_1:27422380-27422399 Msa0016540:three_prime_UTR 40.0%
TTTACCGTTAGCAGCGTCAA+CGG - chr1_1:27416955-27416974 None:intergenic 45.0%
TAACGGTAAAGGTGGAGTAG+CGG + chr1_1:27416965-27416984 Msa0016540:CDS 45.0%
AGAATTGAAGGAATGTGCGG+TGG + chr1_1:27417151-27417170 Msa0016540:CDS 45.0%
TCGTGAAGAAGAAGTGAAGG+TGG + chr1_1:27417196-27417215 Msa0016540:CDS 45.0%
TGAAGAAGAAGTGAAGGTGG+AGG + chr1_1:27417199-27417218 Msa0016540:CDS 45.0%
GGACAAGAGTGATCGTGAAT+TGG + chr1_1:27417277-27417296 Msa0016540:CDS 45.0%
CAGAGTTAAAGAGATCGAGG+AGG + chr1_1:27417313-27417332 Msa0016540:CDS 45.0%
!! AGTTGCTGATTCTACGGATG+CGG + chr1_1:27417358-27417377 Msa0016540:CDS 45.0%
AGTTGAACCAGCTGAGAAGA+AGG + chr1_1:27417502-27417521 Msa0016540:CDS 45.0%
TCACTTTCCTTCTTCTCAGC+TGG - chr1_1:27417512-27417531 None:intergenic 45.0%
! TTGGAAAGTGTAGCTGTTCC+TGG + chr1_1:27417533-27417552 Msa0016540:CDS 45.0%
GGATGTTGAATTCGAAACCG+TGG + chr1_1:27417847-27417866 Msa0016540:CDS 45.0%
ACTCACTTCAGCATCAACCA+CGG - chr1_1:27417867-27417886 None:intergenic 45.0%
TGCAGATGAGAAGGAAACTC+CGG + chr1_1:27417940-27417959 Msa0016540:CDS 45.0%
TTATCAGAGACAGACTCGAC+CGG - chr1_1:27418097-27418116 None:intergenic 45.0%
GTCGAGTCTGTCTCTGATAA+TGG + chr1_1:27418097-27418116 Msa0016540:CDS 45.0%
!! CTCTGATAATGGTTTGGCAG+AGG + chr1_1:27418108-27418127 Msa0016540:CDS 45.0%
! TAATGGTTTGGCAGAGGTTG+AGG + chr1_1:27418114-27418133 Msa0016540:CDS 45.0%
TGAGGTGAGTGAATGCATCA+AGG + chr1_1:27418132-27418151 Msa0016540:CDS 45.0%
TCACTTTCACCTTCATCAGC+AGG - chr1_1:27418214-27418233 None:intergenic 45.0%
! CTCGTAGCTGTTTCCTTTGA+AGG - chr1_1:27418376-27418395 None:intergenic 45.0%
AGCTGAGCCTTCAACAGAAA+CGG + chr1_1:27418399-27418418 Msa0016540:CDS 45.0%
AGCCGAACCTTCAACTGAAA+CGG + chr1_1:27418435-27418454 Msa0016540:CDS 45.0%
CACTAGTTCCGTTGAAGGTT+CGG - chr1_1:27418476-27418495 None:intergenic 45.0%
GCAGTCTCAGTTTCAACTGA+AGG - chr1_1:27418601-27418620 None:intergenic 45.0%
GAAGCTCAAACTTCAGCTGA+AGG + chr1_1:27418781-27418800 Msa0016540:CDS 45.0%
ATCAGTGGCAGATGCTTCTT+GGG - chr1_1:27418842-27418861 None:intergenic 45.0%
TTTCAGCTCGAATTTCGTCG+CGG - chr1_1:27419032-27419051 None:intergenic 45.0%
AGCTGAAAGCCTGGCTAAAA+AGG + chr1_1:27419044-27419063 Msa0016540:CDS 45.0%
TACAAGAAGAGAGAGCTGCT+AGG + chr1_1:27419229-27419248 Msa0016540:CDS 45.0%
ACAAGAAGAGAGAGCTGCTA+GGG + chr1_1:27419230-27419249 Msa0016540:CDS 45.0%
TGTCGGGGATATAGATAGCA+AGG + chr1_1:27419326-27419345 Msa0016540:CDS 45.0%
TTAGAGGCAGAGTTTCATGC+TGG - chr1_1:27419474-27419493 None:intergenic 45.0%
!! GCGATTACAGCTTTTGAGGA+AGG + chr1_1:27419764-27419783 Msa0016540:intron 45.0%
TAGTTACTGCTTCTGCCTTC+AGG - chr1_1:27419815-27419834 None:intergenic 45.0%
CGAGGAAGAAGGTAATCAAG+TGG + chr1_1:27419854-27419873 Msa0016540:CDS 45.0%
AAGTGGATGAGGTTATGGCT+CGG + chr1_1:27419871-27419890 Msa0016540:CDS 45.0%
! TTTTCCGCCCTTTTTCCTTG+AGG + chr1_1:27420004-27420023 Msa0016540:intron 45.0%
! TTTCCGCCCTTTTTCCTTGA+GGG + chr1_1:27420005-27420024 Msa0016540:intron 45.0%
TTTCCCTCAAGGAAAAAGGG+CGG - chr1_1:27420011-27420030 None:intergenic 45.0%
GTGCTTATTCACAACGAGGA+AGG + chr1_1:27420117-27420136 Msa0016540:intron 45.0%
GGAACTCATACCCCTAGATT+TGG - chr1_1:27420169-27420188 None:intergenic 45.0%
ACAAATGCGACACACCTTTG+TGG + chr1_1:27420342-27420361 Msa0016540:intron 45.0%
TAGGCTACATGAGTAGTGTC+TGG + chr1_1:27420434-27420453 Msa0016540:intron 45.0%
GTCTGGAGACTAGTGTTAGT+AGG + chr1_1:27420451-27420470 Msa0016540:intron 45.0%
TCTGCTGAACTAGGTTGTTC+TGG + chr1_1:27420536-27420555 Msa0016540:intron 45.0%
CTGGAGGATGATGTGTTCTT+TGG + chr1_1:27420555-27420574 Msa0016540:intron 45.0%
CTCTCAGCCTGAAAGCTAAT+TGG - chr1_1:27420919-27420938 None:intergenic 45.0%
AAAGGATGAACCTGCTTCCA+AGG + chr1_1:27421173-27421192 Msa0016540:CDS 45.0%
! AGGTTTTTGTACCACAGCCT+TGG - chr1_1:27421193-27421212 None:intergenic 45.0%
! TCTGAAGGAGCAAGTTTTGC+AGG - chr1_1:27421246-27421265 None:intergenic 45.0%
!! TCTGCTGACTTCTTCTCTGA+AGG - chr1_1:27421261-27421280 None:intergenic 45.0%
AGCAGATCGAGTTTCTCGTT+GGG + chr1_1:27421275-27421294 Msa0016540:CDS 45.0%
GGAAGAGGAGCAGATCTTAA+AGG + chr1_1:27421350-27421369 Msa0016540:CDS 45.0%
TCTTAAAGGCTGAACAAGCG+AGG + chr1_1:27421364-27421383 Msa0016540:CDS 45.0%
GGAAGAAGAAGCAAAGCTGA+AGG + chr1_1:27421392-27421411 Msa0016540:CDS 45.0%
CCTTATAGAGAGCCCTTTGT+TGG - chr1_1:27421491-27421510 None:intergenic 45.0%
CCAACAAAGGGCTCTCTATA+AGG + chr1_1:27421488-27421507 Msa0016540:CDS 45.0%
CATGCCTATTTGTGCAGGAA+AGG + chr1_1:27421772-27421791 Msa0016540:intron 45.0%
TCTCCCTTTCCTGCACAAAT+AGG - chr1_1:27421779-27421798 None:intergenic 45.0%
CTTGTCAGAGTTTCAGAGCT+AGG - chr1_1:27421885-27421904 None:intergenic 45.0%
TCAGCTTGAGAAACCAGTTG+AGG + chr1_1:27421923-27421942 Msa0016540:CDS 45.0%
!! GCTCGTTTTGTTACCTCAAC+TGG - chr1_1:27421939-27421958 None:intergenic 45.0%
GACGAATTCAACCATGGATG+TGG + chr1_1:27422033-27422052 Msa0016540:CDS 45.0%
GAATTCAACCATGGATGTGG+TGG + chr1_1:27422036-27422055 Msa0016540:CDS 45.0%
ATTAGAACCCACCACATCCA+TGG - chr1_1:27422047-27422066 None:intergenic 45.0%
! GTGGGTTCTAATTGCAGTTC+TGG + chr1_1:27422055-27422074 Msa0016540:CDS 45.0%
TCATTAGGTGTTTGCCTTGG+GGG + chr1_1:27422190-27422209 Msa0016540:three_prime_UTR 45.0%
GTTACCGTTGACGCTGCTAA+CGG + chr1_1:27416948-27416967 Msa0016540:CDS 50.0%
GTTGACGCTGCTAACGGTAA+AGG + chr1_1:27416954-27416973 Msa0016540:CDS 50.0%
TAAAGGTGGAGTAGCGGTAG+AGG + chr1_1:27416971-27416990 Msa0016540:CDS 50.0%
! CAACGGTTGATGTCGTTGAG+CGG + chr1_1:27417045-27417064 Msa0016540:CDS 50.0%
! AACGGTTGATGTCGTTGAGC+GGG + chr1_1:27417046-27417065 Msa0016540:CDS 50.0%
GTGAAGGTGGAGGATCAACA+CGG + chr1_1:27417209-27417228 Msa0016540:CDS 50.0%
! CGATGTTGTTGTTGCTGACG+TGG + chr1_1:27417256-27417275 Msa0016540:CDS 50.0%
! GGAGGTGGTTGATTCTGATG+CGG + chr1_1:27417382-27417401 Msa0016540:CDS 50.0%
! GAAGCTGATTCACTCACTCC+AGG - chr1_1:27417554-27417573 None:intergenic 50.0%
TCCTGTTGATGTCGGCGAAT+CGG + chr1_1:27418165-27418184 Msa0016540:CDS 50.0%
ACACCAGAACCTGCTGATGA+AGG + chr1_1:27418202-27418221 Msa0016540:CDS 50.0%
TCACCTTCATCAGCAGGTTC+TGG - chr1_1:27418208-27418227 None:intergenic 50.0%
TGAGCCTTCAACAGAAACGG+CGG + chr1_1:27418402-27418421 Msa0016540:CDS 50.0%
CGCCGTTTCAGTTGAAGGTT+CGG - chr1_1:27418440-27418459 None:intergenic 50.0%
CGAACCTTCAACTGAAACGG+CGG + chr1_1:27418438-27418457 Msa0016540:CDS 50.0%
GAGTGAAGCCGAACCTTCAA+CGG + chr1_1:27418465-27418484 Msa0016540:CDS 50.0%
CGAACCTTCAACGGAACTAG+TGG + chr1_1:27418474-27418493 Msa0016540:CDS 50.0%
CATCAGTGGCAGATGCTTCT+TGG - chr1_1:27418843-27418862 None:intergenic 50.0%
AGATGCATCCACAGCATCAG+TGG - chr1_1:27418857-27418876 None:intergenic 50.0%
TGGTGAGGAGGCCATTCTAT+TGG + chr1_1:27418917-27418936 Msa0016540:CDS 50.0%
GAGGAGGCCATTCTATTGGT+TGG + chr1_1:27418921-27418940 Msa0016540:CDS 50.0%
! GGCCATTCTATTGGTTGGTC+CGG + chr1_1:27418926-27418945 Msa0016540:CDS 50.0%
! GCCATTCTATTGGTTGGTCC+GGG + chr1_1:27418927-27418946 Msa0016540:CDS 50.0%
ACCCGGACCAACCAATAGAA+TGG - chr1_1:27418931-27418950 None:intergenic 50.0%
CATCATCGTATCTCGGAACC+CGG - chr1_1:27418948-27418967 None:intergenic 50.0%
CGAAATTCGAGCTGAAAGCC+TGG + chr1_1:27419035-27419054 Msa0016540:CDS 50.0%
TGCTGATGACACTCGTCAAG+AGG + chr1_1:27419902-27419921 Msa0016540:CDS 50.0%
! CTTAGGCTGTGTTGACCCAA+TGG + chr1_1:27420381-27420400 Msa0016540:intron 50.0%
GCTGAACTAGGTTGTTCTGG+AGG + chr1_1:27420539-27420558 Msa0016540:intron 50.0%
! ACTGCAAGAACTAGGAGCAC+AGG + chr1_1:27420766-27420785 Msa0016540:CDS 50.0%
! CTGCAAGAACTAGGAGCACA+GGG + chr1_1:27420767-27420786 Msa0016540:CDS 50.0%
! TGCAAGAACTAGGAGCACAG+GGG + chr1_1:27420768-27420787 Msa0016540:CDS 50.0%
! GGAGCGCTTATGTGTTGATC+AGG + chr1_1:27420805-27420824 Msa0016540:CDS 50.0%
ACTATTACCGGTGCAACACC+AGG + chr1_1:27420977-27420996 Msa0016540:CDS 50.0%
GATGGACGAACGCTTAATCC+TGG + chr1_1:27421027-27421046 Msa0016540:CDS 50.0%
ATGAAGGCAGGAATCATGGG+CGG - chr1_1:27421060-27421079 None:intergenic 50.0%
CAGCAGATCGAGTTTCTCGT+TGG + chr1_1:27421274-27421293 Msa0016540:CDS 50.0%
GCAGATCGAGTTTCTCGTTG+GGG + chr1_1:27421276-27421295 Msa0016540:CDS 50.0%
CAGATCGAGTTTCTCGTTGG+GGG + chr1_1:27421277-27421296 Msa0016540:CDS 50.0%
AGATCGAGTTTCTCGTTGGG+GGG + chr1_1:27421278-27421297 Msa0016540:CDS 50.0%
GGACGAGTCTGATGAAGAGA+AGG + chr1_1:27421299-27421318 Msa0016540:CDS 50.0%
TGAACCTGCGAGAACAAAGG+AGG + chr1_1:27421329-27421348 Msa0016540:CDS 50.0%
TCTTCCTCCTTTGTTCTCGC+AGG - chr1_1:27421336-27421355 None:intergenic 50.0%
TGCGAGAACAAAGGAGGAAG+AGG + chr1_1:27421335-27421354 Msa0016540:CDS 50.0%
!! AAGCTAAGGAGGCACTGCAA+AGG + chr1_1:27421442-27421461 Msa0016540:CDS 50.0%
ATGCCGAAAAGGCCCAACAA+AGG + chr1_1:27421475-27421494 Msa0016540:CDS 50.0%
TGCCGAAAAGGCCCAACAAA+GGG + chr1_1:27421476-27421495 Msa0016540:CDS 50.0%
! AGCCCTTTGTTGGGCCTTTT+CGG - chr1_1:27421481-27421500 None:intergenic 50.0%
CCTGCACAAATAGGCATGCA+TGG - chr1_1:27421770-27421789 None:intergenic 50.0%
CCATGCATGCCTATTTGTGC+AGG + chr1_1:27421767-27421786 Msa0016540:intron 50.0%
TCCGATAACACCGACGACGT+CGG + chr1_1:27416792-27416811 Msa0016540:CDS 55.0%
TTCACCTTCACCGCCTTCGA+CGG - chr1_1:27416820-27416839 None:intergenic 55.0%
GCAGCGTCAACGGTAACGAT+CGG - chr1_1:27416945-27416964 None:intergenic 55.0%
GACGCTGCTAACGGTAAAGG+TGG + chr1_1:27416957-27416976 Msa0016540:CDS 55.0%
!! GGATCAACACGGTGTCGTTG+AGG + chr1_1:27417220-27417239 Msa0016540:CDS 55.0%
!! TGCTGATTCTACGGATGCGG+TGG + chr1_1:27417361-27417380 Msa0016540:CDS 55.0%
TGATTCTACGGATGCGGTGG+AGG + chr1_1:27417364-27417383 Msa0016540:CDS 55.0%
! GGTGGTTGATTCTGATGCGG+TGG + chr1_1:27417385-27417404 Msa0016540:CDS 55.0%
! TCCGATTCGCCGACATCAAC+AGG - chr1_1:27418169-27418188 None:intergenic 55.0%
TTGATGTCGGCGAATCGGAG+AGG + chr1_1:27418170-27418189 Msa0016540:CDS 55.0%
TCCACCGCCGTTTCTGTTGA+AGG - chr1_1:27418409-27418428 None:intergenic 55.0%
ACCTTCAACTGAAACGGCGG+TGG + chr1_1:27418441-27418460 Msa0016540:CDS 55.0%
TCCACCGCCGTTTCAGTTGA+AGG - chr1_1:27418445-27418464 None:intergenic 55.0%
CGCTCCACTAGTTCCGTTGA+AGG - chr1_1:27418481-27418500 None:intergenic 55.0%
AGCATCTGCCACTGATGCTG+TGG + chr1_1:27418846-27418865 Msa0016540:CDS 55.0%
GTCCTGTGCATCCACGACAT+CGG - chr1_1:27418884-27418903 None:intergenic 55.0%
TGTCGTGGATGCACAGGACA+TGG + chr1_1:27418885-27418904 Msa0016540:CDS 55.0%
GTCGTGGATGCACAGGACAT+GGG + chr1_1:27418886-27418905 Msa0016540:CDS 55.0%
! AGGAGCACAGGGGAAGAAAG+AGG + chr1_1:27420778-27420797 Msa0016540:CDS 55.0%
ACAGGGGAAGAAAGAGGACG+TGG + chr1_1:27420784-27420803 Msa0016540:CDS 55.0%
!! CTGTACTCCTGGTGTTGCAC+CGG - chr1_1:27420987-27421006 None:intergenic 55.0%
! GCAACACCAGGAGTACAGTG+AGG + chr1_1:27420989-27421008 Msa0016540:CDS 55.0%
CAGTCTCCTCACTGTACTCC+TGG - chr1_1:27420998-27421017 None:intergenic 55.0%
TGAACCTGCTTCCAAGGCTG+TGG + chr1_1:27421179-27421198 Msa0016540:CDS 55.0%
TGTACCACAGCCTTGGAAGC+AGG - chr1_1:27421186-27421205 None:intergenic 55.0%
GGCTGAACAAGCGAGGAAGA+AGG + chr1_1:27421371-27421390 Msa0016540:CDS 55.0%
CCACGGTTGCGAATAGCCAT+GGG - chr1_1:27422008-27422027 None:intergenic 55.0%
ACCACGGTTGCGAATAGCCA+TGG - chr1_1:27422009-27422028 None:intergenic 55.0%
TAGGTGTTTGCCTTGGGGGA+TGG + chr1_1:27422194-27422213 Msa0016540:three_prime_UTR 55.0%
GTAAGGGTTACCATCCCCCA+AGG - chr1_1:27422207-27422226 None:intergenic 55.0%
!! GCCGACGTCGTCGGTGTTAT+CGG - chr1_1:27416796-27416815 None:intergenic 60.0%
TTCTACGGATGCGGTGGAGG+TGG + chr1_1:27417367-27417386 Msa0016540:CDS 60.0%
GCCTTCAACAGAAACGGCGG+TGG + chr1_1:27418405-27418424 Msa0016540:CDS 60.0%
TGCATCTGCCACCGATGTCG+TGG + chr1_1:27418870-27418889 Msa0016540:CDS 60.0%
CTGTGCATCCACGACATCGG+TGG - chr1_1:27418881-27418900 None:intergenic 60.0%
CACCGATGTCGTGGATGCAC+AGG + chr1_1:27418879-27418898 Msa0016540:CDS 60.0%
TGCACAGGACATGGGCTCTG+AGG + chr1_1:27418894-27418913 Msa0016540:CDS 60.0%
!! ACAGGACATGGGCTCTGAGG+TGG + chr1_1:27418897-27418916 Msa0016540:CDS 60.0%
!! ACATGGGCTCTGAGGTGGTG+AGG + chr1_1:27418902-27418921 Msa0016540:CDS 60.0%
ATCATGGGCGGCTCTTCACC+AGG - chr1_1:27421048-27421067 None:intergenic 60.0%
CCCATGGCTATTCGCAACCG+TGG + chr1_1:27422005-27422024 Msa0016540:CDS 60.0%
!! TGGGCTCTGAGGTGGTGAGG+AGG + chr1_1:27418905-27418924 Msa0016540:CDS 65.0%
!! TTCGACGGCGCCGACGTCGT+CGG - chr1_1:27416805-27416824 None:intergenic 70.0%
GACGACGTCGGCGCCGTCGA+AGG + chr1_1:27416804-27416823 Msa0016540:CDS 75.0%
GACGTCGGCGCCGTCGAAGG+CGG + chr1_1:27416807-27416826 Msa0016540:CDS 75.0%
GGCGCCGTCGAAGGCGGTGA+AGG + chr1_1:27416813-27416832 Msa0016540:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 27416750 27422428 27416750 ID=Msa0016540;Name=Msa0016540
chr1_1 mRNA 27416750 27422428 27416750 ID=Msa0016540-mRNA-1;Parent=Msa0016540;Name=Msa0016540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.85|1|1|1|7|280|1307
chr1_1 exon 27416750 27419065 27416750 ID=Msa0016540-mRNA-1:exon:9258;Parent=Msa0016540-mRNA-1
chr1_1 exon 27419189 27419347 27419189 ID=Msa0016540-mRNA-1:exon:9259;Parent=Msa0016540-mRNA-1
chr1_1 exon 27419448 27419624 27419448 ID=Msa0016540-mRNA-1:exon:9260;Parent=Msa0016540-mRNA-1
chr1_1 exon 27419765 27419968 27419765 ID=Msa0016540-mRNA-1:exon:9261;Parent=Msa0016540-mRNA-1
chr1_1 exon 27420728 27420826 27420728 ID=Msa0016540-mRNA-1:exon:9262;Parent=Msa0016540-mRNA-1
chr1_1 exon 27420931 27421539 27420931 ID=Msa0016540-mRNA-1:exon:9263;Parent=Msa0016540-mRNA-1
chr1_1 exon 27421789 27422428 27421789 ID=Msa0016540-mRNA-1:exon:9264;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27416750 27419065 27416750 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27419189 27419347 27419189 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27419448 27419624 27419448 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27419765 27419968 27419765 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27420728 27420826 27420728 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27420931 27421539 27420931 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 CDS 27421789 27422148 27421789 ID=Msa0016540-mRNA-1:cds;Parent=Msa0016540-mRNA-1
chr1_1 three_prime_UTR 27422149 27422428 27422149 ID=Msa0016540-mRNA-1:three_prime_utr;Parent=Msa0016540-mRNA-1
Gene Sequence

>Msa0016540

ATGACAGCGGAGGAGGTGTTAAACGTACACAGCAAACAAATTTCCGATAACACCGACGACGTCGGCGCCGTCGAAGGCGGTGAAGGTGAAAGTGAAGATCGTAATCATAACAACAAGATCACAGAGCATTGTAATGGTAAGGAAATTTCTGTTAACGGCAATGTCGGTGTTTCTGATTCCGTTCTTTCAGATCCGATCGTTACCGTTGACGCTGCTAACGGTAAAGGTGGAGTAGCGGTAGAGGATCATAGCAACGAATCTGAAGTGACGGTTATGAATTCTAACGGTGAAACGACAACGGTTGATGTCGTTGAGCGGGAAGAGAAGATTTGTGAAAACGGTTCGGGATCTGATGAGAATAACGTTAATGATGATGAATTTGTGATTGTTGAAAACGGTGGAGAATTGAAGGAATGTGCGGTGGAGAATCTTGTTGAGAATGAGATTCGTGAAGAAGAAGTGAAGGTGGAGGATCAACACGGTGTCGTTGAGGAGAATGAGATTTGCGATGTTGTTGTTGCTGACGTGGACAAGAGTGATCGTGAATTGGAAGGTGTTGAGAACAGAGTTAAAGAGATCGAGGAGGTTTCTGTTGCCGCTGTTGAAGAAGTTGCTGATTCTACGGATGCGGTGGAGGTGGTTGATTCTGATGCGGTGGAAAGAACCGAATCTAAAGATCACGAAAGCGAAAATCTTTGGGATGGAAAGAACGAAATTCGTGATGTTGAATTGGAAAGTAAAGTTGATGGTGAAGTTGAACCAGCTGAGAAGAAGGAAAGTGAATTGGAAAGTGTAGCTGTTCCTGGAGTGAGTGAATCAGCTTCAGCTGAGAAGAATGATAATCGCGATGTTGAATTGGGAACTGTAGTTGACTCTGAAGTGAGTGAATCAGCTACGAAGAATGAAAATCGTGATGTTGAGTTGAAAACTGTAGTTGATTCTGAAGTGAGTGAATCATCTGAGAAGAATGAAAATCGTGATGTTCAATTGGAAAGTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAAAATGAAATTTTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAAAACGAAATTCGGGATGTTGAATTCGAAACCGTGGTTGATGCTGAAGTGAGTGAATCGGTCGAGAAGAATGAAACTCCAGTTGATGTTAATGGAGTTTGTGATAATGCAGATGAGAAGGAAACTCCGGTTGATGTTAATGCAGATACTCAAAATGATTTAGAGAAGGTGTCCGTTGAGTCTGTCTCTGATACAATTGTTGAAAATGATTTGGATAAGGTACCGGTTGAGTCTGTCTCTGATAATGGTTTGGAGAAGGTACCGGTCGAGTCTGTCTCTGATAATGGTTTGGCAGAGGTTGAGGTGAGTGAATGCATCAAGGAGAATGTGATTCCTGTTGATGTCGGCGAATCGGAGAGGTCTGTTGAGACACCAGAACCTGCTGATGAAGGTGAAAGTGAACCTTCTGTTGTTACATCTGAGGTGAGAGACATTAAAGAGGAGAGTGAGGCTGAACCTTCAGATAATGCTGTCAAAGTTGAAGGTGAATCTATTGAAGTCTCTGAGATTAAAAACGATGCAGTTGGGGATGAAGTTGAACCTTCAAAGGAAACAGCTACGAGTGAAGCTGAGCCTTCAACAGAAACGGCGGTGGAGCGTGAAGCCGAACCTTCAACTGAAACGGCGGTGGAGAGTGAAGCCGAACCTTCAACGGAACTAGTGGAGCGTGAAGCTGAAGTTTTGAACAATGTAGTGCATAGTGAGGCTGAGCCTTCTGTTGATGTTGCAGATTTGAAAACCAATGTTGTCGATAGAGAAGTTGAACCTTCAGTTGAAACTGAGACTGCGGTTGAAGCCGAAAATTCAGTTGAAGCTGAAACTTCGGTTGAAGCCGAAACATCAATTGAAACTTCAGTTGAAGCCGAAATTTCAATTGAAGCTGAACCTTCAATTGAAGCTGAAACTTCGGTTGAAGCCGAGACCTCTATTGAAGCTGAACCTTCAGTTGAAGCTCAAACTTCAGCTGAAGGTAGCAATCAGACAACAGCTGAAGATTTGAAAACATCCCAAGAAGCATCTGCCACTGATGCTGTGGATGCATCTGCCACCGATGTCGTGGATGCACAGGACATGGGCTCTGAGGTGGTGAGGAGGCCATTCTATTGGTTGGTCCGGGTTCCGAGATACGATGATGATGACAATGTAAAAGAGCAGATTCAACATGCTCTTCAACAAGTAGAGGAGCAGACTAAAATCCGCGACGAAATTCGAGCTGAAAGCCTGGCTAAAAAGGCCCTTCGTAAAGAGTATAATCAAGAATTTAGAGCTGCAGTACAAGAAGAGAGAGCTGCTAGGGAGTTGCTCAAATCCAAACGACAAGAGATGGATTCAGTTCAATCCACCATGAATAGATTAAACAATGCAATTTCTGTCGGGGATATAGATAGCAAGATTCGAAACATGGAACACATGATCCAGCATGAAACTCTGCCTCTAAAAGAAGAAAAGCAATTGATTCGCCAAATCAAACTATTGAAGCAAAATCGCGGCGAGCTGTCTAATATTATTGCAAAACAGGATCAATCACAATCTCTCGACGACAAAGAAAGCATTGAAGAGCAAACTAAGCGATTACAGCTTTTGAGGAAGGAATTGGATGTGCTTAGAAGTAATCTCCTGAAGGCAGAAGCAGTAACTAAAGCAGCAAAGAAGAAATACGAGGAAGAAGGTAATCAAGTGGATGAGGTTATGGCTCGGTATAACGCTGCTGATGACACTCGTCAAGAGGCATTTGTCAAGTTACAGACTTTGAAAAGGCAATTGCATGAGAAGAGCAAATATTTTTGGGAATACAGAAGTGCTTCAATGAGACTGCAAGAACTAGGAGCACAGGGGAAGAAAGAGGACGTGGAGCGCTTATGTGTTGATCAGGCTGAGAGAATGCATGAGCTGTTGAAGAATGATGAGTTCAGAAAGGACTATTACCGGTGCAACACCAGGAGTACAGTGAGGAGACTGCAAACTTTAGATGGACGAACGCTTAATCCTGGTGAAGAGCCGCCCATGATTCCTGCCTTCATTGAAAGAGCTTACAAAAATGATTCATCAGTTTCGCAGTCAACCCCTGAACAACAAAAGAAATTAACACCAACAGAACCTGTTACTGTTAATACAAAGGATGAACCTGCTTCCAAGGCTGTGGTACAAAAACCTGAAATAAGCCAGACAAGTAAACCTAAAAAGCCTGCAAAACTTGCTCCTTCAGAGAAGAAGTCAGCAGATCGAGTTTCTCGTTGGGGGGACGAGTCTGATGAAGAGAAGGAACCTAATGAACCTGCGAGAACAAAGGAGGAAGAGGAGCAGATCTTAAAGGCTGAACAAGCGAGGAAGAAGGAAGAAGAAGCAAAGCTGAAGGAAAAGAAAAGGCTAGAGGAAATTGAGAAAGCTAAGGAGGCACTGCAAAGGAAAAAGCGTAATGCCGAAAAGGCCCAACAAAGGGCTCTCTATAAGGCACAAAAAGAAGCTGAGCAAAAAGAGAAGGAAAGGGAGAAAAGAGCAAAGAAGAAGGGAAAAAGAAAGACAGTTACTACTGAAGATGCTGTGGAGAATACAGAACAAGATGCTGCAGCTTCTCCTAGCTCTGAAACTCTGACAAGAACTCTGGAAGAATCTGATCAGCTTGAGAAACCAGTTGAGGTAACAAAACGAGCAGTGAAACCATCTCAATTCACAAAACAAAGCAAGGTAAAAGCTTTACCCATGGCTATTCGCAACCGTGGTAAGAGACGAATTCAACCATGGATGTGGTGGGTTCTAATTGCAGTTCTGGTTATTGCTGCCTTGTTTTATATGGGAAATAACAGCTCCTTGAGATCTTCATTTCAAAGCTTTGGTTTTTGA
Protein sequence

>Msa0016540

MTAEEVLNVHSKQISDNTDDVGAVEGGEGESEDRNHNNKITEHCNGKEISVNGNVGVSDSVLSDPIVTVDAANGKGGVAVEDHSNESEVTVMNSNGETTTVDVVEREEKICENGSGSDENNVNDDEFVIVENGGELKECAVENLVENEIREEEVKVEDQHGVVEENEICDVVVADVDKSDRELEGVENRVKEIEEVSVAAVEEVADSTDAVEVVDSDAVERTESKDHESENLWDGKNEIRDVELESKVDGEVEPAEKKESELESVAVPGVSESASAEKNDNRDVELGTVVDSEVSESATKNENRDVELKTVVDSEVSESSEKNENRDVQLESVVDSEVSESAEKNEILETVVDSEVSESAEKNEIRDVEFETVVDAEVSESVEKNETPVDVNGVCDNADEKETPVDVNADTQNDLEKVSVESVSDTIVENDLDKVPVESVSDNGLEKVPVESVSDNGLAEVEVSECIKENVIPVDVGESERSVETPEPADEGESEPSVVTSEVRDIKEESEAEPSDNAVKVEGESIEVSEIKNDAVGDEVEPSKETATSEAEPSTETAVEREAEPSTETAVESEAEPSTELVEREAEVLNNVVHSEAEPSVDVADLKTNVVDREVEPSVETETAVEAENSVEAETSVEAETSIETSVEAEISIEAEPSIEAETSVEAETSIEAEPSVEAQTSAEGSNQTTAEDLKTSQEASATDAVDASATDVVDAQDMGSEVVRRPFYWLVRVPRYDDDDNVKEQIQHALQQVEEQTKIRDEIRAESLAKKALRKEYNQEFRAAVQEERAARELLKSKRQEMDSVQSTMNRLNNAISVGDIDSKIRNMEHMIQHETLPLKEEKQLIRQIKLLKQNRGELSNIIAKQDQSQSLDDKESIEEQTKRLQLLRKELDVLRSNLLKAEAVTKAAKKKYEEEGNQVDEVMARYNAADDTRQEAFVKLQTLKRQLHEKSKYFWEYRSASMRLQELGAQGKKEDVERLCVDQAERMHELLKNDEFRKDYYRCNTRSTVRRLQTLDGRTLNPGEEPPMIPAFIERAYKNDSSVSQSTPEQQKKLTPTEPVTVNTKDEPASKAVVQKPEISQTSKPKKPAKLAPSEKKSADRVSRWGDESDEEKEPNEPARTKEEEEQILKAEQARKKEEEAKLKEKKRLEEIEKAKEALQRKKRNAEKAQQRALYKAQKEAEQKEKEREKRAKKKGKRKTVTTEDAVENTEQDAAASPSSETLTRTLEESDQLEKPVEVTKRAVKPSQFTKQSKVKALPMAIRNRGKRRIQPWMWWVLIAVLVIAALFYMGNNSSLRSSFQSFGF*