AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0723150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723150 MtrunA17_Chr5g0413971 93.590 156 10 0 1 156 1 156 1.79e-110 310
Msa0723150 MtrunA17_Chr8g0339261 29.801 151 105 1 1 151 1 150 9.60e-20 80.5
Msa0723150 MtrunA17_Chr1g0160371 32.026 153 97 5 3 151 1 150 1.81e-15 69.3
Msa0723150 MtrunA17_Chr1g0160381 30.968 155 96 6 3 151 5 154 3.89e-14 65.9
Msa0723150 MtrunA17_Chr1g0160391 30.827 133 86 3 3 130 1 132 1.68e-12 61.6
Msa0723150 MtrunA17_Chr1g0160801 29.630 135 86 5 9 141 7 134 1.84e-12 61.2
Msa0723150 MtrunA17_Chr8g0355741 27.097 155 109 4 3 155 1 153 5.10e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723150 AT1G24020.1 51.678 149 72 0 3 151 1 149 2.81e-55 171
Msa0723150 AT1G24020.2 51.678 149 72 0 3 151 1 149 2.81e-55 171
Msa0723150 AT1G70830.5 34.868 152 96 2 2 151 19 169 2.18e-22 88.2
Msa0723150 AT1G70830.3 34.868 152 96 2 2 151 19 169 4.02e-22 88.2
Msa0723150 AT1G70840.1 36.667 150 92 2 4 151 19 167 4.26e-22 87.4
Msa0723150 AT1G70830.2 34.868 152 96 2 2 151 19 169 1.47e-21 87.8
Msa0723150 AT1G70850.2 34.416 154 98 2 2 153 6 158 1.99e-21 87.0
Msa0723150 AT1G70830.1 34.868 152 96 2 2 151 19 169 3.64e-21 88.2
Msa0723150 AT1G70830.1 33.333 150 97 2 4 151 183 331 1.77e-19 83.6
Msa0723150 AT1G70850.3 34.416 154 98 2 2 153 6 158 6.21e-21 87.0
Msa0723150 AT1G70850.3 33.813 139 89 2 15 151 175 312 2.35e-17 77.4
Msa0723150 AT1G70850.1 34.416 154 98 2 2 153 6 158 6.21e-21 87.0
Msa0723150 AT1G70850.1 33.813 139 89 2 15 151 175 312 2.35e-17 77.4
Msa0723150 AT1G70890.1 36.184 152 94 3 2 151 4 154 7.62e-21 83.6
Msa0723150 AT1G70830.4 33.333 150 97 2 4 151 136 284 8.54e-20 83.6
Msa0723150 AT5G28010.1 31.579 152 101 2 4 153 14 164 2.70e-19 79.7
Msa0723150 AT5G28010.2 31.579 152 101 2 4 153 14 164 2.70e-19 79.7
Msa0723150 AT5G28000.1 32.237 152 100 2 4 153 12 162 5.63e-18 76.3
Msa0723150 AT1G70880.1 31.169 154 103 3 2 153 5 157 4.82e-17 73.9
Msa0723150 AT1G14930.1 28.289 152 102 3 3 151 1 148 7.54e-14 65.5
Msa0723150 AT1G35260.1 31.081 148 96 4 9 153 6 150 2.57e-13 63.9
Msa0723150 AT3G26460.1 25.333 150 110 2 3 151 1 149 7.41e-11 57.4

Find 45 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATCACATTAAATAAAA+AGG 0.223692 5_1:+20780028 None:intergenic
CTTTGTCCCTTTGTTATTGT+TGG 0.276860 5_1:-20779994 Msa0723150:three_prime_UTR
AAGCTAGAAAGAAATTAAAT+TGG 0.308506 5_1:+20781088 None:intergenic
TAGTCATGTGGGAAGGCCTT+AGG 0.333006 5_1:+20780958 None:intergenic
AATAGTTGTAGAATCCCTTA+TGG 0.338562 5_1:+20780984 None:intergenic
GCAAAATCTTTGACAATAGT+TGG 0.338740 5_1:+20780193 None:intergenic
CTTTCTAGCTTATTGAATCA+TGG 0.378434 5_1:-20781076 Msa0723150:exon
ATCCCCTTCAATTATACAAT+AGG 0.381348 5_1:+20780330 None:intergenic
ATCTCACATCCTTCTCCAAC+TGG 0.381866 5_1:+20780262 None:intergenic
TGATTTAAATTTAATGAGAA+TGG 0.383658 5_1:-20779930 Msa0723150:three_prime_UTR
CCTTGAATGATTTGTAGTAT+TGG 0.436050 5_1:+20780302 None:intergenic
CCAATACTACAAATCATTCA+AGG 0.446219 5_1:-20780302 Msa0723150:CDS
AGTCTAATGCAGACAAGTAC+TGG 0.454231 5_1:-20781011 Msa0723150:CDS
AATCATACTAACAATTAAAG+AGG 0.454448 5_1:+20779948 None:intergenic
AGTCATGTGGGAAGGCCTTA+GGG 0.459268 5_1:+20780959 None:intergenic
GAGAAGGATGTGAGATGAAA+TGG 0.470943 5_1:-20780255 Msa0723150:CDS
ACAAGTACTGGCAAACCATA+AGG 0.476885 5_1:-20780999 Msa0723150:CDS
TGCATTTGATCATGAGTTGA+AGG 0.477107 5_1:-20780108 Msa0723150:three_prime_UTR
GAGGGTGATGGTAAAGCTCC+TGG 0.482745 5_1:-20780916 Msa0723150:CDS
TCTTTGACAATAGTTGGATC+AGG 0.487708 5_1:+20780199 None:intergenic
GTGAAGTGGCGGATAGAGCC+AGG 0.488549 5_1:+20780898 None:intergenic
GCAACCTATTGTATAATTGA+AGG 0.505768 5_1:-20780334 Msa0723150:CDS
AAAAGCATTGAGGTCCTTGA+GGG 0.507266 5_1:-20780934 Msa0723150:CDS
CAAGTACTGGCAAACCATAA+GGG 0.509772 5_1:-20780998 Msa0723150:CDS
AAATGTATTGTTACATAATG+TGG 0.517276 5_1:-20780063 Msa0723150:three_prime_UTR
ATCATGGCTGTAGCTCTTCG+TGG 0.517791 5_1:-20781060 Msa0723150:CDS
CAACCTATTGTATAATTGAA+GGG 0.524179 5_1:-20780333 Msa0723150:CDS
ATTAAGCCAACAATAACAAA+GGG 0.538473 5_1:+20779988 None:intergenic
TACCTTCAGCATAAGTGAAG+TGG 0.548909 5_1:+20780884 None:intergenic
TGCAGTCAAGAACTTCATTG+AGG 0.557320 5_1:-20780173 Msa0723150:CDS
CAAAAGCATTGAGGTCCTTG+AGG 0.558857 5_1:-20780935 Msa0723150:CDS
CGCCACTTCACTTATGCTGA+AGG 0.559188 5_1:-20780886 Msa0723150:intron
ATTGAGGTCCTTGAGGGTGA+TGG 0.560374 5_1:-20780928 Msa0723150:CDS
CATCTTGCTGTAACACCAGT+TGG 0.560972 5_1:-20780277 Msa0723150:CDS
CATTAAGCCAACAATAACAA+AGG 0.573469 5_1:+20779987 None:intergenic
CAATACTACAAATCATTCAA+GGG 0.584423 5_1:-20780301 Msa0723150:CDS
GCTGTAACACCAGTTGGAGA+AGG 0.585512 5_1:-20780271 Msa0723150:CDS
AACCTATTGTATAATTGAAG+GGG 0.589185 5_1:-20780332 Msa0723150:CDS
GAGCTTTACCATCACCCTCA+AGG 0.617751 5_1:+20780920 None:intergenic
ATGCTGCTGATGATGAAAAG+AGG 0.618271 5_1:-20780360 Msa0723150:CDS
AGTCAAGAACTTCATTGAGG+TGG 0.628959 5_1:-20780170 Msa0723150:CDS
CTTCAGCATAAGTGAAGTGG+CGG 0.638511 5_1:+20780887 None:intergenic
AAAACTCGCGAAGTCTTCGA+CGG 0.651660 5_1:-20780392 Msa0723150:CDS
AGCTCTTCGTGGAAAGCTAG+AGG 0.660101 5_1:-20781049 Msa0723150:CDS
ACATGACTACAAAAGCATTG+AGG 0.674108 5_1:-20780944 Msa0723150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATGAAATTCAATAAATA+AGG - chr5_1:20780334-20780353 Msa0723150:CDS 15.0%
!! TGATGAAATTCAATAAATAA+GGG - chr5_1:20780335-20780354 Msa0723150:CDS 15.0%
!! TAGATCACATTAAATAAAAA+GGG + chr5_1:20781002-20781021 None:intergenic 15.0%
!! ATAGATCACATTAAATAAAA+AGG + chr5_1:20781003-20781022 None:intergenic 15.0%
!! TGATTTAAATTTAATGAGAA+TGG - chr5_1:20781098-20781117 Msa0723150:five_prime_UTR 15.0%
!! ATGATGAAATTCAATAAATA+AGG - chr5_1:20780334-20780353 Msa0723150:CDS 15.0%
!! TGATGAAATTCAATAAATAA+GGG - chr5_1:20780335-20780354 Msa0723150:CDS 15.0%
!! TAGATCACATTAAATAAAAA+GGG + chr5_1:20781002-20781021 None:intergenic 15.0%
!! ATAGATCACATTAAATAAAA+AGG + chr5_1:20781003-20781022 None:intergenic 15.0%
!! TGATTTAAATTTAATGAGAA+TGG - chr5_1:20781098-20781117 Msa0723150:five_prime_UTR 15.0%
!! AAGCTAGAAAGAAATTAAAT+TGG + chr5_1:20779943-20779962 None:intergenic 20.0%
!!! AATAAATAAGGGTATATCAA+TGG - chr5_1:20780346-20780365 Msa0723150:CDS 20.0%
!! TTGATCCTACAATATATTAT+AGG + chr5_1:20780618-20780637 None:intergenic 20.0%
!! AAATGTATTGTTACATAATG+TGG - chr5_1:20780965-20780984 Msa0723150:CDS 20.0%
!! AATCATACTAACAATTAAAG+AGG + chr5_1:20781083-20781102 None:intergenic 20.0%
!! AAGCTAGAAAGAAATTAAAT+TGG + chr5_1:20779943-20779962 None:intergenic 20.0%
!!! AATAAATAAGGGTATATCAA+TGG - chr5_1:20780346-20780365 Msa0723150:CDS 20.0%
!! TTGATCCTACAATATATTAT+AGG + chr5_1:20780618-20780637 None:intergenic 20.0%
!! AAATGTATTGTTACATAATG+TGG - chr5_1:20780965-20780984 Msa0723150:CDS 20.0%
!! AATCATACTAACAATTAAAG+AGG + chr5_1:20781083-20781102 None:intergenic 20.0%
! AATTTAGAGACTTTCTTCTT+TGG - chr5_1:20780168-20780187 Msa0723150:CDS 25.0%
! TGTTAAATCGATGATTAAAG+AGG - chr5_1:20780433-20780452 Msa0723150:intron 25.0%
! TCATACATTCTTATCTGATT+TGG - chr5_1:20780589-20780608 Msa0723150:intron 25.0%
! CAACCTATTGTATAATTGAA+GGG - chr5_1:20780695-20780714 Msa0723150:intron 25.0%
! AACCTATTGTATAATTGAAG+GGG - chr5_1:20780696-20780715 Msa0723150:intron 25.0%
! CAATACTACAAATCATTCAA+GGG - chr5_1:20780727-20780746 Msa0723150:intron 25.0%
! ATTAAGCCAACAATAACAAA+GGG + chr5_1:20781043-20781062 None:intergenic 25.0%
! AATTTAGAGACTTTCTTCTT+TGG - chr5_1:20780168-20780187 Msa0723150:CDS 25.0%
! TGTTAAATCGATGATTAAAG+AGG - chr5_1:20780433-20780452 Msa0723150:intron 25.0%
! TCATACATTCTTATCTGATT+TGG - chr5_1:20780589-20780608 Msa0723150:intron 25.0%
! CAACCTATTGTATAATTGAA+GGG - chr5_1:20780695-20780714 Msa0723150:intron 25.0%
! AACCTATTGTATAATTGAAG+GGG - chr5_1:20780696-20780715 Msa0723150:intron 25.0%
! CAATACTACAAATCATTCAA+GGG - chr5_1:20780727-20780746 Msa0723150:intron 25.0%
! ATTAAGCCAACAATAACAAA+GGG + chr5_1:20781043-20781062 None:intergenic 25.0%
!! CTTTCTAGCTTATTGAATCA+TGG - chr5_1:20779952-20779971 Msa0723150:three_prime_UTR 30.0%
AATAGTTGTAGAATCCCTTA+TGG + chr5_1:20780047-20780066 None:intergenic 30.0%
! TTCTACAACTATTTTCCCTA+AGG - chr5_1:20780054-20780073 Msa0723150:three_prime_UTR 30.0%
!! TACATTCTTATCTGATTTGG+TGG - chr5_1:20780592-20780611 Msa0723150:intron 30.0%
GCAACCTATTGTATAATTGA+AGG - chr5_1:20780694-20780713 Msa0723150:intron 30.0%
ATCCCCTTCAATTATACAAT+AGG + chr5_1:20780701-20780720 None:intergenic 30.0%
! CCTTGAATGATTTGTAGTAT+TGG + chr5_1:20780729-20780748 None:intergenic 30.0%
CCAATACTACAAATCATTCA+AGG - chr5_1:20780726-20780745 Msa0723150:intron 30.0%
GCAAAATCTTTGACAATAGT+TGG + chr5_1:20780838-20780857 None:intergenic 30.0%
CATTAAGCCAACAATAACAA+AGG + chr5_1:20781044-20781063 None:intergenic 30.0%
!! CTTTCTAGCTTATTGAATCA+TGG - chr5_1:20779952-20779971 Msa0723150:three_prime_UTR 30.0%
AATAGTTGTAGAATCCCTTA+TGG + chr5_1:20780047-20780066 None:intergenic 30.0%
! TTCTACAACTATTTTCCCTA+AGG - chr5_1:20780054-20780073 Msa0723150:three_prime_UTR 30.0%
!! TACATTCTTATCTGATTTGG+TGG - chr5_1:20780592-20780611 Msa0723150:intron 30.0%
GCAACCTATTGTATAATTGA+AGG - chr5_1:20780694-20780713 Msa0723150:intron 30.0%
ATCCCCTTCAATTATACAAT+AGG + chr5_1:20780701-20780720 None:intergenic 30.0%
! CCTTGAATGATTTGTAGTAT+TGG + chr5_1:20780729-20780748 None:intergenic 30.0%
CCAATACTACAAATCATTCA+AGG - chr5_1:20780726-20780745 Msa0723150:intron 30.0%
GCAAAATCTTTGACAATAGT+TGG + chr5_1:20780838-20780857 None:intergenic 30.0%
CATTAAGCCAACAATAACAA+AGG + chr5_1:20781044-20781063 None:intergenic 30.0%
! CAATGCTTTTGTAGTCATGT+GGG + chr5_1:20780084-20780103 None:intergenic 35.0%
! TCAATGCTTTTGTAGTCATG+TGG + chr5_1:20780085-20780104 None:intergenic 35.0%
!! ACATGACTACAAAAGCATTG+AGG - chr5_1:20780084-20780103 Msa0723150:three_prime_UTR 35.0%
TCTTCTTTGGTAGAGAATGA+AGG - chr5_1:20780181-20780200 Msa0723150:CDS 35.0%
CTTCTTTGGTAGAGAATGAA+GGG - chr5_1:20780182-20780201 Msa0723150:CDS 35.0%
!!! TAGAGAATGAAGGGCATTTT+GGG - chr5_1:20780191-20780210 Msa0723150:CDS 35.0%
GTCAAATGCAACGAATATTG+TGG + chr5_1:20780289-20780308 None:intergenic 35.0%
ATTAAAGAGGTAGAGACACT+AGG - chr5_1:20780446-20780465 Msa0723150:intron 35.0%
AAAGCGATACATGAATCTCT+TGG + chr5_1:20780526-20780545 None:intergenic 35.0%
GGTGGCCTATAATATATTGT+AGG - chr5_1:20780610-20780629 Msa0723150:intron 35.0%
TCTTTGACAATAGTTGGATC+AGG + chr5_1:20780832-20780851 None:intergenic 35.0%
! TGCATTTGATCATGAGTTGA+AGG - chr5_1:20780920-20780939 Msa0723150:CDS 35.0%
!! CTTTGTCCCTTTGTTATTGT+TGG - chr5_1:20781034-20781053 Msa0723150:CDS 35.0%
! CAATGCTTTTGTAGTCATGT+GGG + chr5_1:20780084-20780103 None:intergenic 35.0%
! TCAATGCTTTTGTAGTCATG+TGG + chr5_1:20780085-20780104 None:intergenic 35.0%
!! ACATGACTACAAAAGCATTG+AGG - chr5_1:20780084-20780103 Msa0723150:three_prime_UTR 35.0%
TCTTCTTTGGTAGAGAATGA+AGG - chr5_1:20780181-20780200 Msa0723150:CDS 35.0%
CTTCTTTGGTAGAGAATGAA+GGG - chr5_1:20780182-20780201 Msa0723150:CDS 35.0%
!!! TAGAGAATGAAGGGCATTTT+GGG - chr5_1:20780191-20780210 Msa0723150:CDS 35.0%
GTCAAATGCAACGAATATTG+TGG + chr5_1:20780289-20780308 None:intergenic 35.0%
ATTAAAGAGGTAGAGACACT+AGG - chr5_1:20780446-20780465 Msa0723150:intron 35.0%
AAAGCGATACATGAATCTCT+TGG + chr5_1:20780526-20780545 None:intergenic 35.0%
GGTGGCCTATAATATATTGT+AGG - chr5_1:20780610-20780629 Msa0723150:intron 35.0%
TCTTTGACAATAGTTGGATC+AGG + chr5_1:20780832-20780851 None:intergenic 35.0%
! TGCATTTGATCATGAGTTGA+AGG - chr5_1:20780920-20780939 Msa0723150:CDS 35.0%
!! CTTTGTCCCTTTGTTATTGT+TGG - chr5_1:20781034-20781053 Msa0723150:CDS 35.0%
AGTCTAATGCAGACAAGTAC+TGG - chr5_1:20780017-20780036 Msa0723150:three_prime_UTR 40.0%
!! ACAAGTACTGGCAAACCATA+AGG - chr5_1:20780029-20780048 Msa0723150:three_prime_UTR 40.0%
!! CAAGTACTGGCAAACCATAA+GGG - chr5_1:20780030-20780049 Msa0723150:three_prime_UTR 40.0%
!! AAAAGCATTGAGGTCCTTGA+GGG - chr5_1:20780094-20780113 Msa0723150:three_prime_UTR 40.0%
TACCTTCAGCATAAGTGAAG+TGG + chr5_1:20780147-20780166 None:intergenic 40.0%
!!! GTAGAGAATGAAGGGCATTT+TGG - chr5_1:20780190-20780209 Msa0723150:CDS 40.0%
! ATGCTGCTGATGATGAAAAG+AGG - chr5_1:20780668-20780687 Msa0723150:intron 40.0%
GAGAAGGATGTGAGATGAAA+TGG - chr5_1:20780773-20780792 Msa0723150:intron 40.0%
TGCAGTCAAGAACTTCATTG+AGG - chr5_1:20780855-20780874 Msa0723150:intron 40.0%
AGTCAAGAACTTCATTGAGG+TGG - chr5_1:20780858-20780877 Msa0723150:intron 40.0%
AGTCTAATGCAGACAAGTAC+TGG - chr5_1:20780017-20780036 Msa0723150:three_prime_UTR 40.0%
!! ACAAGTACTGGCAAACCATA+AGG - chr5_1:20780029-20780048 Msa0723150:three_prime_UTR 40.0%
!! CAAGTACTGGCAAACCATAA+GGG - chr5_1:20780030-20780049 Msa0723150:three_prime_UTR 40.0%
!! AAAAGCATTGAGGTCCTTGA+GGG - chr5_1:20780094-20780113 Msa0723150:three_prime_UTR 40.0%
TACCTTCAGCATAAGTGAAG+TGG + chr5_1:20780147-20780166 None:intergenic 40.0%
!!! GTAGAGAATGAAGGGCATTT+TGG - chr5_1:20780190-20780209 Msa0723150:CDS 40.0%
! ATGCTGCTGATGATGAAAAG+AGG - chr5_1:20780668-20780687 Msa0723150:intron 40.0%
GAGAAGGATGTGAGATGAAA+TGG - chr5_1:20780773-20780792 Msa0723150:intron 40.0%
TGCAGTCAAGAACTTCATTG+AGG - chr5_1:20780855-20780874 Msa0723150:intron 40.0%
AGTCAAGAACTTCATTGAGG+TGG - chr5_1:20780858-20780877 Msa0723150:intron 40.0%
! GCTTTTGTAGTCATGTGGGA+AGG + chr5_1:20780080-20780099 None:intergenic 45.0%
!! CAAAAGCATTGAGGTCCTTG+AGG - chr5_1:20780093-20780112 Msa0723150:three_prime_UTR 45.0%
CTTCAGCATAAGTGAAGTGG+CGG + chr5_1:20780144-20780163 None:intergenic 45.0%
CATGAATCTCTTGGAACGCT+AGG + chr5_1:20780517-20780536 None:intergenic 45.0%
AAAACTCGCGAAGTCTTCGA+CGG - chr5_1:20780636-20780655 Msa0723150:intron 45.0%
! CATCTTGCTGTAACACCAGT+TGG - chr5_1:20780751-20780770 Msa0723150:intron 45.0%
ATCTCACATCCTTCTCCAAC+TGG + chr5_1:20780769-20780788 None:intergenic 45.0%
! GCTTTTGTAGTCATGTGGGA+AGG + chr5_1:20780080-20780099 None:intergenic 45.0%
!! CAAAAGCATTGAGGTCCTTG+AGG - chr5_1:20780093-20780112 Msa0723150:three_prime_UTR 45.0%
CTTCAGCATAAGTGAAGTGG+CGG + chr5_1:20780144-20780163 None:intergenic 45.0%
CATGAATCTCTTGGAACGCT+AGG + chr5_1:20780517-20780536 None:intergenic 45.0%
AAAACTCGCGAAGTCTTCGA+CGG - chr5_1:20780636-20780655 Msa0723150:intron 45.0%
! CATCTTGCTGTAACACCAGT+TGG - chr5_1:20780751-20780770 Msa0723150:intron 45.0%
ATCTCACATCCTTCTCCAAC+TGG + chr5_1:20780769-20780788 None:intergenic 45.0%
ATCATGGCTGTAGCTCTTCG+TGG - chr5_1:20779968-20779987 Msa0723150:three_prime_UTR 50.0%
AGCTCTTCGTGGAAAGCTAG+AGG - chr5_1:20779979-20779998 Msa0723150:three_prime_UTR 50.0%
AGTCATGTGGGAAGGCCTTA+GGG + chr5_1:20780072-20780091 None:intergenic 50.0%
TAGTCATGTGGGAAGGCCTT+AGG + chr5_1:20780073-20780092 None:intergenic 50.0%
ATTGAGGTCCTTGAGGGTGA+TGG - chr5_1:20780100-20780119 Msa0723150:three_prime_UTR 50.0%
GAGCTTTACCATCACCCTCA+AGG + chr5_1:20780111-20780130 None:intergenic 50.0%
CGCCACTTCACTTATGCTGA+AGG - chr5_1:20780142-20780161 Msa0723150:CDS 50.0%
GCTGTAACACCAGTTGGAGA+AGG - chr5_1:20780757-20780776 Msa0723150:intron 50.0%
ATCATGGCTGTAGCTCTTCG+TGG - chr5_1:20779968-20779987 Msa0723150:three_prime_UTR 50.0%
AGCTCTTCGTGGAAAGCTAG+AGG - chr5_1:20779979-20779998 Msa0723150:three_prime_UTR 50.0%
AGTCATGTGGGAAGGCCTTA+GGG + chr5_1:20780072-20780091 None:intergenic 50.0%
TAGTCATGTGGGAAGGCCTT+AGG + chr5_1:20780073-20780092 None:intergenic 50.0%
ATTGAGGTCCTTGAGGGTGA+TGG - chr5_1:20780100-20780119 Msa0723150:three_prime_UTR 50.0%
GAGCTTTACCATCACCCTCA+AGG + chr5_1:20780111-20780130 None:intergenic 50.0%
CGCCACTTCACTTATGCTGA+AGG - chr5_1:20780142-20780161 Msa0723150:CDS 50.0%
GCTGTAACACCAGTTGGAGA+AGG - chr5_1:20780757-20780776 Msa0723150:intron 50.0%
! GAGGGTGATGGTAAAGCTCC+TGG - chr5_1:20780112-20780131 Msa0723150:three_prime_UTR 55.0%
AACGCTAGGCACTAGTGCAG+TGG + chr5_1:20780503-20780522 None:intergenic 55.0%
! GAGGGTGATGGTAAAGCTCC+TGG - chr5_1:20780112-20780131 Msa0723150:three_prime_UTR 55.0%
AACGCTAGGCACTAGTGCAG+TGG + chr5_1:20780503-20780522 None:intergenic 55.0%
!! GTGAAGTGGCGGATAGAGCC+AGG + chr5_1:20780133-20780152 None:intergenic 60.0%
!! GTGAAGTGGCGGATAGAGCC+AGG + chr5_1:20780133-20780152 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 20779911 20781139 20779911 ID=Msa0723150;Name=Msa0723150
chr5_1 mRNA 20779911 20781139 20779911 ID=Msa0723150-mRNA-1;Parent=Msa0723150;Name=Msa0723150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=60|1|1|1|1|1|2|230|156
chr5_1 exon 20779911 20780418 20779911 ID=Msa0723150-mRNA-1:exon:7909;Parent=Msa0723150-mRNA-1
chr5_1 exon 20780887 20781139 20780887 ID=Msa0723150-mRNA-1:exon:7908;Parent=Msa0723150-mRNA-1
chr5_1 five_prime_UTR 20781080 20781139 20781080 ID=Msa0723150-mRNA-1:five_prime_utr;Parent=Msa0723150-mRNA-1
chr5_1 CDS 20780887 20781079 20780887 ID=Msa0723150-mRNA-1:cds;Parent=Msa0723150-mRNA-1
chr5_1 CDS 20780141 20780418 20780141 ID=Msa0723150-mRNA-1:cds;Parent=Msa0723150-mRNA-1
chr5_1 three_prime_UTR 20779911 20780140 20779911 ID=Msa0723150-mRNA-1:three_prime_utr;Parent=Msa0723150-mRNA-1
Gene Sequence

>Msa0723150

ATGGCTGTAGCTCTTCGTGGAAAGCTAGAGGTAGACATTGAACTCAAGTCTAATGCAGACAAGTACTGGCAAACCATAAGGGATTCTACAACTATTTTCCCTAAGGCCTTCCCACATGACTACAAAAGCATTGAGGTCCTTGAGGGTGATGGTAAAGCTCCTGGCTCTATCCGCCACTTCACTTATGCTGAAGGATCAAAACTCGCGAAGTCTTCGACGGAGAAGATTGATGCTGCTGATGATGAAAAGAGGACAGCAACCTATTGTATAATTGAAGGGGATCTTCTCCAATACTACAAATCATTCAAGGGACATCTTGCTGTAACACCAGTTGGAGAAGGATGTGAGATGAAATGGTGTGCTGAGTATATTAAAGTTAGTAATGATATTCCTGATCCAACTATTGTCAAAGATTTTGCAGTCAAGAACTTCATTGAGGTGGATGACTATGTTCAATCACTTGCTGCATAG

Protein sequence

>Msa0723150

MAVALRGKLEVDIELKSNADKYWQTIRDSTTIFPKAFPHDYKSIEVLEGDGKAPGSIRHFTYAEGSKLAKSSTEKIDAADDEKRTATYCIIEGDLLQYYKSFKGHLAVTPVGEGCEMKWCAEYIKVSNDIPDPTIVKDFAVKNFIEVDDYVQSLAA*