AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0722940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0722940 MtrunA17_Chr5g0413971 93.590 156 10 0 1 156 1 156 1.79e-110 310
Msa0722940 MtrunA17_Chr8g0339261 29.801 151 105 1 1 151 1 150 9.60e-20 80.5
Msa0722940 MtrunA17_Chr1g0160371 32.026 153 97 5 3 151 1 150 1.81e-15 69.3
Msa0722940 MtrunA17_Chr1g0160381 30.968 155 96 6 3 151 5 154 3.89e-14 65.9
Msa0722940 MtrunA17_Chr1g0160391 30.827 133 86 3 3 130 1 132 1.68e-12 61.6
Msa0722940 MtrunA17_Chr1g0160801 29.630 135 86 5 9 141 7 134 1.84e-12 61.2
Msa0722940 MtrunA17_Chr8g0355741 27.097 155 109 4 3 155 1 153 5.10e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0722940 AT1G24020.1 51.678 149 72 0 3 151 1 149 2.81e-55 171
Msa0722940 AT1G24020.2 51.678 149 72 0 3 151 1 149 2.81e-55 171
Msa0722940 AT1G70830.5 34.868 152 96 2 2 151 19 169 2.18e-22 88.2
Msa0722940 AT1G70830.3 34.868 152 96 2 2 151 19 169 4.02e-22 88.2
Msa0722940 AT1G70840.1 36.667 150 92 2 4 151 19 167 4.26e-22 87.4
Msa0722940 AT1G70830.2 34.868 152 96 2 2 151 19 169 1.47e-21 87.8
Msa0722940 AT1G70850.2 34.416 154 98 2 2 153 6 158 1.99e-21 87.0
Msa0722940 AT1G70830.1 34.868 152 96 2 2 151 19 169 3.64e-21 88.2
Msa0722940 AT1G70830.1 33.333 150 97 2 4 151 183 331 1.77e-19 83.6
Msa0722940 AT1G70850.3 34.416 154 98 2 2 153 6 158 6.21e-21 87.0
Msa0722940 AT1G70850.3 33.813 139 89 2 15 151 175 312 2.35e-17 77.4
Msa0722940 AT1G70850.1 34.416 154 98 2 2 153 6 158 6.21e-21 87.0
Msa0722940 AT1G70850.1 33.813 139 89 2 15 151 175 312 2.35e-17 77.4
Msa0722940 AT1G70890.1 36.184 152 94 3 2 151 4 154 7.62e-21 83.6
Msa0722940 AT1G70830.4 33.333 150 97 2 4 151 136 284 8.54e-20 83.6
Msa0722940 AT5G28010.1 31.579 152 101 2 4 153 14 164 2.70e-19 79.7
Msa0722940 AT5G28010.2 31.579 152 101 2 4 153 14 164 2.70e-19 79.7
Msa0722940 AT5G28000.1 32.237 152 100 2 4 153 12 162 5.63e-18 76.3
Msa0722940 AT1G70880.1 31.169 154 103 3 2 153 5 157 4.82e-17 73.9
Msa0722940 AT1G14930.1 28.289 152 102 3 3 151 1 148 7.54e-14 65.5
Msa0722940 AT1G35260.1 31.081 148 96 4 9 153 6 150 2.57e-13 63.9
Msa0722940 AT3G26460.1 25.333 150 110 2 3 151 1 149 7.41e-11 57.4

Find 43 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATCACATTAAATAAAA+AGG 0.223692 5_1:+20484840 None:intergenic
CTTTGTTCCTTTGTTATTGT+TGG 0.271015 5_1:-20484806 Msa0722940:three_prime_UTR
AAGCTAGAAAGAAATTAAAT+TGG 0.308506 5_1:+20485970 None:intergenic
TAGTCATGTGGGAAGGCCTT+AGG 0.333006 5_1:+20485840 None:intergenic
AATAGTTGTAGAATCCCTTA+TGG 0.338562 5_1:+20485866 None:intergenic
GCAAAATCTTTGACAATAGT+TGG 0.338740 5_1:+20485005 None:intergenic
CTTTCTAGCTTATTGAATCA+TGG 0.378434 5_1:-20485958 Msa0722940:exon
ATCCCCTTCAATTATACAAT+AGG 0.381348 5_1:+20485142 None:intergenic
ATCTCACATCCTTCTCCAAC+TGG 0.381866 5_1:+20485074 None:intergenic
TGATTTAAATTTAATGAGAA+TGG 0.383658 5_1:-20484745 Msa0722940:three_prime_UTR
CCTTGAATGATTTGTAGTAT+TGG 0.436050 5_1:+20485114 None:intergenic
CCAATACTACAAATCATTCA+AGG 0.446219 5_1:-20485114 Msa0722940:CDS
AGTCTAATGCAGACAAGTAC+TGG 0.454231 5_1:-20485893 Msa0722940:CDS
AGTCATGTGGGAAGGCCTTA+GGG 0.459268 5_1:+20485841 None:intergenic
GAGAAGGATGTGAGATGAAA+TGG 0.470943 5_1:-20485067 Msa0722940:CDS
ACAAGTACTGGCAAACCATA+AGG 0.476885 5_1:-20485881 Msa0722940:CDS
TGCATTTGATCATGAGTTGA+AGG 0.477107 5_1:-20484920 Msa0722940:three_prime_UTR
GAGGGTGATGGTAAAGCTCC+TGG 0.482745 5_1:-20485798 Msa0722940:CDS
TCTTTGACAATAGTTGGATC+AGG 0.487708 5_1:+20485011 None:intergenic
GTGAAGTGGCGGATAGAGCC+AGG 0.488549 5_1:+20485780 None:intergenic
GCAACCTATTGTATAATTGA+AGG 0.505768 5_1:-20485146 Msa0722940:CDS
AAAAGCATTGAGGTCCTTGA+GGG 0.507266 5_1:-20485816 Msa0722940:CDS
CAAGTACTGGCAAACCATAA+GGG 0.509772 5_1:-20485880 Msa0722940:CDS
AAATGTATTGTTACATAATG+TGG 0.517276 5_1:-20484875 Msa0722940:three_prime_UTR
ATCATGGCTGTAGCTCTTCG+TGG 0.517791 5_1:-20485942 Msa0722940:CDS
CAACCTATTGTATAATTGAA+GGG 0.524179 5_1:-20485145 Msa0722940:CDS
TACCTTCAGCATAAGTGAAG+TGG 0.548909 5_1:+20485766 None:intergenic
TGCAGTCAAGAACTTCATTG+AGG 0.557320 5_1:-20484985 Msa0722940:CDS
CAAAAGCATTGAGGTCCTTG+AGG 0.558857 5_1:-20485817 Msa0722940:CDS
CGCCACTTCACTTATGCTGA+AGG 0.559188 5_1:-20485768 Msa0722940:intron
ATTGAGGTCCTTGAGGGTGA+TGG 0.560374 5_1:-20485810 Msa0722940:CDS
CATCTTGCTGTAACACCAGT+TGG 0.560972 5_1:-20485089 Msa0722940:CDS
CAATACTACAAATCATTCAA+GGG 0.584423 5_1:-20485113 Msa0722940:CDS
GCTGTAACACCAGTTGGAGA+AGG 0.585512 5_1:-20485083 Msa0722940:CDS
AACCTATTGTATAATTGAAG+GGG 0.589185 5_1:-20485144 Msa0722940:CDS
GAGCTTTACCATCACCCTCA+AGG 0.617751 5_1:+20485802 None:intergenic
ATGCTGCTGATGATGAAAAG+AGG 0.618271 5_1:-20485172 Msa0722940:CDS
AGTCAAGAACTTCATTGAGG+TGG 0.628959 5_1:-20484982 Msa0722940:CDS
CATTAAGCCAACAATAACAA+AGG 0.631117 5_1:+20484799 None:intergenic
CTTCAGCATAAGTGAAGTGG+CGG 0.638511 5_1:+20485769 None:intergenic
AAAACTCGCGAAGTCTTCGA+CGG 0.651660 5_1:-20485204 Msa0722940:CDS
AGCTCTTCGTGGAAAGCTAG+AGG 0.660101 5_1:-20485931 Msa0722940:CDS
ACATGACTACAAAAGCATTG+AGG 0.674108 5_1:-20485826 Msa0722940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATCACATTAAATAAAAA+GGG + chr5_1:20485889-20485908 None:intergenic 15.0%
!! ATAGATCACATTAAATAAAA+AGG + chr5_1:20485890-20485909 None:intergenic 15.0%
!! TGATTTAAATTTAATGAGAA+TGG - chr5_1:20485982-20486001 Msa0722940:five_prime_UTR 15.0%
!! TAGATCACATTAAATAAAAA+GGG + chr5_1:20485889-20485908 None:intergenic 15.0%
!! ATAGATCACATTAAATAAAA+AGG + chr5_1:20485890-20485909 None:intergenic 15.0%
!! TGATTTAAATTTAATGAGAA+TGG - chr5_1:20485982-20486001 Msa0722940:five_prime_UTR 15.0%
!! AAGCTAGAAAGAAATTAAAT+TGG + chr5_1:20484760-20484779 None:intergenic 20.0%
!! ACACAATGTTCAAATAAAAT+TGG + chr5_1:20485306-20485325 None:intergenic 20.0%
!!! TCATACATTTTTATCTGATT+TGG - chr5_1:20485476-20485495 Msa0722940:intron 20.0%
!! TTGATCCTACAATATATTAT+AGG + chr5_1:20485505-20485524 None:intergenic 20.0%
!! AAATGTATTGTTACATAATG+TGG - chr5_1:20485852-20485871 Msa0722940:CDS 20.0%
!! AAGCTAGAAAGAAATTAAAT+TGG + chr5_1:20484760-20484779 None:intergenic 20.0%
!! ACACAATGTTCAAATAAAAT+TGG + chr5_1:20485306-20485325 None:intergenic 20.0%
!!! TCATACATTTTTATCTGATT+TGG - chr5_1:20485476-20485495 Msa0722940:intron 20.0%
!! TTGATCCTACAATATATTAT+AGG + chr5_1:20485505-20485524 None:intergenic 20.0%
!! AAATGTATTGTTACATAATG+TGG - chr5_1:20485852-20485871 Msa0722940:CDS 20.0%
! AATTTAGAGACTTTCTTCTT+TGG - chr5_1:20484985-20485004 Msa0722940:CDS 25.0%
! ATGATGAAACTCAGTAAATA+AGG - chr5_1:20485150-20485169 Msa0722940:CDS 25.0%
! TGATGAAACTCAGTAAATAA+GGG - chr5_1:20485151-20485170 Msa0722940:CDS 25.0%
!! AGTAAATAAGGGTATATCAA+TGG - chr5_1:20485162-20485181 Msa0722940:CDS 25.0%
! GATGATTAAAATGAGACATA+GGG - chr5_1:20485248-20485267 Msa0722940:intron 25.0%
!!! TACATTTTTATCTGATTTGG+TGG - chr5_1:20485479-20485498 Msa0722940:intron 25.0%
! CAACCTATTGTATAATTGAA+GGG - chr5_1:20485582-20485601 Msa0722940:intron 25.0%
! AACCTATTGTATAATTGAAG+GGG - chr5_1:20485583-20485602 Msa0722940:intron 25.0%
! CAATACTACAAATCATTCAA+GGG - chr5_1:20485614-20485633 Msa0722940:intron 25.0%
! AATTTAGAGACTTTCTTCTT+TGG - chr5_1:20484985-20485004 Msa0722940:CDS 25.0%
! ATGATGAAACTCAGTAAATA+AGG - chr5_1:20485150-20485169 Msa0722940:CDS 25.0%
! TGATGAAACTCAGTAAATAA+GGG - chr5_1:20485151-20485170 Msa0722940:CDS 25.0%
!! AGTAAATAAGGGTATATCAA+TGG - chr5_1:20485162-20485181 Msa0722940:CDS 25.0%
! GATGATTAAAATGAGACATA+GGG - chr5_1:20485248-20485267 Msa0722940:intron 25.0%
!!! TACATTTTTATCTGATTTGG+TGG - chr5_1:20485479-20485498 Msa0722940:intron 25.0%
! CAACCTATTGTATAATTGAA+GGG - chr5_1:20485582-20485601 Msa0722940:intron 25.0%
! AACCTATTGTATAATTGAAG+GGG - chr5_1:20485583-20485602 Msa0722940:intron 25.0%
! CAATACTACAAATCATTCAA+GGG - chr5_1:20485614-20485633 Msa0722940:intron 25.0%
!! CTTTCTAGCTTATTGAATCA+TGG - chr5_1:20484769-20484788 Msa0722940:three_prime_UTR 30.0%
AATAGTTGTAGAATCCCTTA+TGG + chr5_1:20484864-20484883 None:intergenic 30.0%
! TTCTACAACTATTTTCCCTA+AGG - chr5_1:20484871-20484890 Msa0722940:three_prime_UTR 30.0%
CGATGATTAAAATGAGACAT+AGG - chr5_1:20485247-20485266 Msa0722940:intron 30.0%
TGAACATTGTGTATTTATCG+AGG - chr5_1:20485314-20485333 Msa0722940:intron 30.0%
GAACATTGTGTATTTATCGA+GGG - chr5_1:20485315-20485334 Msa0722940:intron 30.0%
GCAACCTATTGTATAATTGA+AGG - chr5_1:20485581-20485600 Msa0722940:intron 30.0%
ATCCCCTTCAATTATACAAT+AGG + chr5_1:20485588-20485607 None:intergenic 30.0%
! CCTTGAATGATTTGTAGTAT+TGG + chr5_1:20485616-20485635 None:intergenic 30.0%
CCAATACTACAAATCATTCA+AGG - chr5_1:20485613-20485632 Msa0722940:intron 30.0%
GCAAAATCTTTGACAATAGT+TGG + chr5_1:20485725-20485744 None:intergenic 30.0%
!! CTTTGTTCCTTTGTTATTGT+TGG - chr5_1:20485921-20485940 Msa0722940:CDS 30.0%
CATTAAGCCAACAATAACAA+AGG + chr5_1:20485931-20485950 None:intergenic 30.0%
!! CTTTCTAGCTTATTGAATCA+TGG - chr5_1:20484769-20484788 Msa0722940:three_prime_UTR 30.0%
AATAGTTGTAGAATCCCTTA+TGG + chr5_1:20484864-20484883 None:intergenic 30.0%
! TTCTACAACTATTTTCCCTA+AGG - chr5_1:20484871-20484890 Msa0722940:three_prime_UTR 30.0%
CGATGATTAAAATGAGACAT+AGG - chr5_1:20485247-20485266 Msa0722940:intron 30.0%
TGAACATTGTGTATTTATCG+AGG - chr5_1:20485314-20485333 Msa0722940:intron 30.0%
GAACATTGTGTATTTATCGA+GGG - chr5_1:20485315-20485334 Msa0722940:intron 30.0%
GCAACCTATTGTATAATTGA+AGG - chr5_1:20485581-20485600 Msa0722940:intron 30.0%
ATCCCCTTCAATTATACAAT+AGG + chr5_1:20485588-20485607 None:intergenic 30.0%
! CCTTGAATGATTTGTAGTAT+TGG + chr5_1:20485616-20485635 None:intergenic 30.0%
CCAATACTACAAATCATTCA+AGG - chr5_1:20485613-20485632 Msa0722940:intron 30.0%
GCAAAATCTTTGACAATAGT+TGG + chr5_1:20485725-20485744 None:intergenic 30.0%
!! CTTTGTTCCTTTGTTATTGT+TGG - chr5_1:20485921-20485940 Msa0722940:CDS 30.0%
CATTAAGCCAACAATAACAA+AGG + chr5_1:20485931-20485950 None:intergenic 30.0%
! CAATGCTTTTGTAGTCATGT+GGG + chr5_1:20484901-20484920 None:intergenic 35.0%
! TCAATGCTTTTGTAGTCATG+TGG + chr5_1:20484902-20484921 None:intergenic 35.0%
!! ACATGACTACAAAAGCATTG+AGG - chr5_1:20484901-20484920 Msa0722940:three_prime_UTR 35.0%
TCTTCTTTGGTAGAGAATGA+AGG - chr5_1:20484998-20485017 Msa0722940:CDS 35.0%
CTTCTTTGGTAGAGAATGAA+GGG - chr5_1:20484999-20485018 Msa0722940:CDS 35.0%
!!! TAGAGAATGAAGGGCATTTT+GGG - chr5_1:20485008-20485027 Msa0722940:CDS 35.0%
GTCAAATGCAACGAATATTG+TGG + chr5_1:20485106-20485125 None:intergenic 35.0%
AAAATGAGACATAGGGAGTA+TGG - chr5_1:20485255-20485274 Msa0722940:intron 35.0%
AAAGCGATACATGAATCTCT+TGG + chr5_1:20485413-20485432 None:intergenic 35.0%
GGTGGCCTATAATATATTGT+AGG - chr5_1:20485497-20485516 Msa0722940:intron 35.0%
TCTTTGACAATAGTTGGATC+AGG + chr5_1:20485719-20485738 None:intergenic 35.0%
! TGCATTTGATCATGAGTTGA+AGG - chr5_1:20485807-20485826 Msa0722940:CDS 35.0%
! CAATGCTTTTGTAGTCATGT+GGG + chr5_1:20484901-20484920 None:intergenic 35.0%
! TCAATGCTTTTGTAGTCATG+TGG + chr5_1:20484902-20484921 None:intergenic 35.0%
!! ACATGACTACAAAAGCATTG+AGG - chr5_1:20484901-20484920 Msa0722940:three_prime_UTR 35.0%
TCTTCTTTGGTAGAGAATGA+AGG - chr5_1:20484998-20485017 Msa0722940:CDS 35.0%
CTTCTTTGGTAGAGAATGAA+GGG - chr5_1:20484999-20485018 Msa0722940:CDS 35.0%
!!! TAGAGAATGAAGGGCATTTT+GGG - chr5_1:20485008-20485027 Msa0722940:CDS 35.0%
GTCAAATGCAACGAATATTG+TGG + chr5_1:20485106-20485125 None:intergenic 35.0%
AAAATGAGACATAGGGAGTA+TGG - chr5_1:20485255-20485274 Msa0722940:intron 35.0%
AAAGCGATACATGAATCTCT+TGG + chr5_1:20485413-20485432 None:intergenic 35.0%
GGTGGCCTATAATATATTGT+AGG - chr5_1:20485497-20485516 Msa0722940:intron 35.0%
TCTTTGACAATAGTTGGATC+AGG + chr5_1:20485719-20485738 None:intergenic 35.0%
! TGCATTTGATCATGAGTTGA+AGG - chr5_1:20485807-20485826 Msa0722940:CDS 35.0%
AGTCTAATGCAGACAAGTAC+TGG - chr5_1:20484834-20484853 Msa0722940:three_prime_UTR 40.0%
!! ACAAGTACTGGCAAACCATA+AGG - chr5_1:20484846-20484865 Msa0722940:three_prime_UTR 40.0%
!! CAAGTACTGGCAAACCATAA+GGG - chr5_1:20484847-20484866 Msa0722940:three_prime_UTR 40.0%
!! AAAAGCATTGAGGTCCTTGA+GGG - chr5_1:20484911-20484930 Msa0722940:three_prime_UTR 40.0%
TACCTTCAGCATAAGTGAAG+TGG + chr5_1:20484964-20484983 None:intergenic 40.0%
!!! GTAGAGAATGAAGGGCATTT+TGG - chr5_1:20485007-20485026 Msa0722940:CDS 40.0%
TTGTGTATTTATCGAGGGAG+AGG - chr5_1:20485320-20485339 Msa0722940:intron 40.0%
AGAGACACTAGGTCATACAT+TGG - chr5_1:20485344-20485363 Msa0722940:intron 40.0%
! ATGCTGCTGATGATGAAAAG+AGG - chr5_1:20485555-20485574 Msa0722940:intron 40.0%
GAGAAGGATGTGAGATGAAA+TGG - chr5_1:20485660-20485679 Msa0722940:intron 40.0%
TGCAGTCAAGAACTTCATTG+AGG - chr5_1:20485742-20485761 Msa0722940:intron 40.0%
AGTCAAGAACTTCATTGAGG+TGG - chr5_1:20485745-20485764 Msa0722940:intron 40.0%
AGTCTAATGCAGACAAGTAC+TGG - chr5_1:20484834-20484853 Msa0722940:three_prime_UTR 40.0%
!! ACAAGTACTGGCAAACCATA+AGG - chr5_1:20484846-20484865 Msa0722940:three_prime_UTR 40.0%
!! CAAGTACTGGCAAACCATAA+GGG - chr5_1:20484847-20484866 Msa0722940:three_prime_UTR 40.0%
!! AAAAGCATTGAGGTCCTTGA+GGG - chr5_1:20484911-20484930 Msa0722940:three_prime_UTR 40.0%
TACCTTCAGCATAAGTGAAG+TGG + chr5_1:20484964-20484983 None:intergenic 40.0%
!!! GTAGAGAATGAAGGGCATTT+TGG - chr5_1:20485007-20485026 Msa0722940:CDS 40.0%
TTGTGTATTTATCGAGGGAG+AGG - chr5_1:20485320-20485339 Msa0722940:intron 40.0%
AGAGACACTAGGTCATACAT+TGG - chr5_1:20485344-20485363 Msa0722940:intron 40.0%
! ATGCTGCTGATGATGAAAAG+AGG - chr5_1:20485555-20485574 Msa0722940:intron 40.0%
GAGAAGGATGTGAGATGAAA+TGG - chr5_1:20485660-20485679 Msa0722940:intron 40.0%
TGCAGTCAAGAACTTCATTG+AGG - chr5_1:20485742-20485761 Msa0722940:intron 40.0%
AGTCAAGAACTTCATTGAGG+TGG - chr5_1:20485745-20485764 Msa0722940:intron 40.0%
! GCTTTTGTAGTCATGTGGGA+AGG + chr5_1:20484897-20484916 None:intergenic 45.0%
!! CAAAAGCATTGAGGTCCTTG+AGG - chr5_1:20484910-20484929 Msa0722940:three_prime_UTR 45.0%
CTTCAGCATAAGTGAAGTGG+CGG + chr5_1:20484961-20484980 None:intergenic 45.0%
CATGAATCTCTTGGAACGCT+AGG + chr5_1:20485404-20485423 None:intergenic 45.0%
AAAACTCGCGAAGTCTTCGA+CGG - chr5_1:20485523-20485542 Msa0722940:intron 45.0%
! CATCTTGCTGTAACACCAGT+TGG - chr5_1:20485638-20485657 Msa0722940:intron 45.0%
ATCTCACATCCTTCTCCAAC+TGG + chr5_1:20485656-20485675 None:intergenic 45.0%
! GCTTTTGTAGTCATGTGGGA+AGG + chr5_1:20484897-20484916 None:intergenic 45.0%
!! CAAAAGCATTGAGGTCCTTG+AGG - chr5_1:20484910-20484929 Msa0722940:three_prime_UTR 45.0%
CTTCAGCATAAGTGAAGTGG+CGG + chr5_1:20484961-20484980 None:intergenic 45.0%
CATGAATCTCTTGGAACGCT+AGG + chr5_1:20485404-20485423 None:intergenic 45.0%
AAAACTCGCGAAGTCTTCGA+CGG - chr5_1:20485523-20485542 Msa0722940:intron 45.0%
! CATCTTGCTGTAACACCAGT+TGG - chr5_1:20485638-20485657 Msa0722940:intron 45.0%
ATCTCACATCCTTCTCCAAC+TGG + chr5_1:20485656-20485675 None:intergenic 45.0%
ATCATGGCTGTAGCTCTTCG+TGG - chr5_1:20484785-20484804 Msa0722940:three_prime_UTR 50.0%
AGCTCTTCGTGGAAAGCTAG+AGG - chr5_1:20484796-20484815 Msa0722940:three_prime_UTR 50.0%
AGTCATGTGGGAAGGCCTTA+GGG + chr5_1:20484889-20484908 None:intergenic 50.0%
TAGTCATGTGGGAAGGCCTT+AGG + chr5_1:20484890-20484909 None:intergenic 50.0%
ATTGAGGTCCTTGAGGGTGA+TGG - chr5_1:20484917-20484936 Msa0722940:three_prime_UTR 50.0%
GAGCTTTACCATCACCCTCA+AGG + chr5_1:20484928-20484947 None:intergenic 50.0%
CGCCACTTCACTTATGCTGA+AGG - chr5_1:20484959-20484978 Msa0722940:CDS 50.0%
GCTGTAACACCAGTTGGAGA+AGG - chr5_1:20485644-20485663 Msa0722940:intron 50.0%
ATCATGGCTGTAGCTCTTCG+TGG - chr5_1:20484785-20484804 Msa0722940:three_prime_UTR 50.0%
AGCTCTTCGTGGAAAGCTAG+AGG - chr5_1:20484796-20484815 Msa0722940:three_prime_UTR 50.0%
AGTCATGTGGGAAGGCCTTA+GGG + chr5_1:20484889-20484908 None:intergenic 50.0%
TAGTCATGTGGGAAGGCCTT+AGG + chr5_1:20484890-20484909 None:intergenic 50.0%
ATTGAGGTCCTTGAGGGTGA+TGG - chr5_1:20484917-20484936 Msa0722940:three_prime_UTR 50.0%
GAGCTTTACCATCACCCTCA+AGG + chr5_1:20484928-20484947 None:intergenic 50.0%
CGCCACTTCACTTATGCTGA+AGG - chr5_1:20484959-20484978 Msa0722940:CDS 50.0%
GCTGTAACACCAGTTGGAGA+AGG - chr5_1:20485644-20485663 Msa0722940:intron 50.0%
! GAGGGTGATGGTAAAGCTCC+TGG - chr5_1:20484929-20484948 Msa0722940:three_prime_UTR 55.0%
GAGGGAGAGGTAGAGACACT+AGG - chr5_1:20485333-20485352 Msa0722940:intron 55.0%
AACGCTAGGCACTAGTGCAG+TGG + chr5_1:20485390-20485409 None:intergenic 55.0%
! GAGGGTGATGGTAAAGCTCC+TGG - chr5_1:20484929-20484948 Msa0722940:three_prime_UTR 55.0%
GAGGGAGAGGTAGAGACACT+AGG - chr5_1:20485333-20485352 Msa0722940:intron 55.0%
AACGCTAGGCACTAGTGCAG+TGG + chr5_1:20485390-20485409 None:intergenic 55.0%
!! GTGAAGTGGCGGATAGAGCC+AGG + chr5_1:20484950-20484969 None:intergenic 60.0%
!! GTGAAGTGGCGGATAGAGCC+AGG + chr5_1:20484950-20484969 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 20484726 20486023 20484726 ID=Msa0722940;Name=Msa0722940
chr5_1 mRNA 20484726 20486023 20484726 ID=Msa0722940-mRNA-1;Parent=Msa0722940;Name=Msa0722940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=62|1|1|1|1|1|2|227|156
chr5_1 exon 20484726 20485230 20484726 ID=Msa0722940-mRNA-1:exon:7784;Parent=Msa0722940-mRNA-1
chr5_1 exon 20485769 20486023 20485769 ID=Msa0722940-mRNA-1:exon:7783;Parent=Msa0722940-mRNA-1
chr5_1 five_prime_UTR 20485962 20486023 20485962 ID=Msa0722940-mRNA-1:five_prime_utr;Parent=Msa0722940-mRNA-1
chr5_1 CDS 20485769 20485961 20485769 ID=Msa0722940-mRNA-1:cds;Parent=Msa0722940-mRNA-1
chr5_1 CDS 20484953 20485230 20484953 ID=Msa0722940-mRNA-1:cds;Parent=Msa0722940-mRNA-1
chr5_1 three_prime_UTR 20484726 20484952 20484726 ID=Msa0722940-mRNA-1:three_prime_utr;Parent=Msa0722940-mRNA-1
Gene Sequence

>Msa0722940

ATGGCTGTAGCTCTTCGTGGAAAGCTAGAGGTAGACATTGAACTCAAGTCTAATGCAGACAAGTACTGGCAAACCATAAGGGATTCTACAACTATTTTCCCTAAGGCCTTCCCACATGACTACAAAAGCATTGAGGTCCTTGAGGGTGATGGTAAAGCTCCTGGCTCTATCCGCCACTTCACTTATGCTGAAGGATCAAAACTCGCGAAGTCTTCGACGGAGAAGATTGATGCTGCTGATGATGAAAAGAGGACAGCAACCTATTGTATAATTGAAGGGGATCTTCTCCAATACTACAAATCATTCAAGGGACATCTTGCTGTAACACCAGTTGGAGAAGGATGTGAGATGAAATGGTGTGCTGAGTATATTAAAGTTAGTAATGATATTCCTGATCCAACTATTGTCAAAGATTTTGCAGTCAAGAACTTCATTGAGGTGGATGACTATGTTCAATCACTTGCTGCATAG

Protein sequence

>Msa0722940

MAVALRGKLEVDIELKSNADKYWQTIRDSTTIFPKAFPHDYKSIEVLEGDGKAPGSIRHFTYAEGSKLAKSSTEKIDAADDEKRTATYCIIEGDLLQYYKSFKGHLAVTPVGEGCEMKWCAEYIKVSNDIPDPTIVKDFAVKNFIEVDDYVQSLAA*