AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038980 MtrunA17_Chr4g0033761 100.000 69 0 0 1 69 1 69 2.71e-45 139
Msa0038980 MtrunA17_Chr2g0285451 94.203 69 4 0 1 69 1 69 3.14e-42 131
Msa0038980 MtrunA17_Chr8g0376751 94.203 69 4 0 1 69 1 69 3.74e-42 131
Msa0038980 MtrunA17_Chr7g0216191 91.304 69 6 0 1 69 1 69 1.58e-38 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038980 AT2G43460.1 92.754 69 5 0 1 69 1 69 2.34e-42 132
Msa0038980 AT3G59540.1 92.754 69 5 0 1 69 1 69 2.34e-42 132

Find 22 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGCCAATAGGGGTTAAT+TGG 0.261885 1_1:+68490581 Msa0038980:three_prime_UTR
AGCGTGCCGATTGTGAATTT+TGG 0.263068 1_1:+68488984 Msa0038980:five_prime_UTR
TAAGCAAATCAATGAGATTA+AGG 0.290766 1_1:+68489452 Msa0038980:CDS
GCAAGACTTGTAATTCTATC+TGG 0.306868 1_1:+68490335 Msa0038980:exon
ACCATCCAATTAACCCCTAT+TGG 0.334265 1_1:-68490586 None:intergenic
CTAATTGATTAAATAAATAA+TGG 0.376725 1_1:-68490506 None:intergenic
GTGAAGATCAACTGTTGCTT+TGG 0.403613 1_1:+68490373 Msa0038980:three_prime_UTR
CAAAGATGTTGTCAAGTTCA+AGG 0.413071 1_1:+68489530 Msa0038980:CDS
ATCGGCACGCTCAAGTTTCA+AGG 0.462834 1_1:-68488972 None:intergenic
TCCTCCCCAAAATTCACAAT+CGG 0.486947 1_1:-68488990 None:intergenic
ACAAAGTGTGTACAAGTACT+TGG 0.506752 1_1:-68489562 None:intergenic
TTAATCTCATTGATTTGCTT+AGG 0.531275 1_1:-68489450 None:intergenic
TTGAAGCAATCACTTCCTCC+AGG 0.546677 1_1:+68489612 Msa0038980:CDS
TCAAAATGAGAGTTGTAAGC+TGG 0.548819 1_1:-68490445 None:intergenic
GCCAATAGGGGTTAATTGGA+TGG 0.550915 1_1:+68490585 Msa0038980:three_prime_UTR
AGGACTTCCTCCTCACTGCT+AGG 0.557805 1_1:+68489472 Msa0038980:CDS
GTACGACAAGAAAATAGAGC+TGG 0.581522 1_1:-68490473 None:intergenic
CCTCCTCACTGCTAGGAGGA+AGG 0.586231 1_1:+68489479 Msa0038980:CDS
AGCAACAGTTGATCTTCACT+CGG 0.647859 1_1:-68490369 None:intergenic
CCTTCCTCCTAGCAGTGAGG+AGG 0.655712 1_1:-68489479 None:intergenic
CGTCCTTCCTCCTAGCAGTG+AGG 0.660436 1_1:-68489482 None:intergenic
ACTTCCTCCTCACTGCTAGG+AGG 0.666318 1_1:+68489475 Msa0038980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATTAAAAATGAAAAT+AGG - chr1_1:68489142-68489161 None:intergenic 10.0%
!!! AATTTTATTTACTCAATTTT+AGG + chr1_1:68489205-68489224 Msa0038980:intron 10.0%
!!! ATTTTATTTACTCAATTTTA+GGG + chr1_1:68489206-68489225 Msa0038980:intron 10.0%
!!! TTTTTTTATTTATTTGGATT+TGG + chr1_1:68489363-68489382 Msa0038980:intron 10.0%
!! AAATGTATAAAGTAAATAAT+AGG + chr1_1:68489802-68489821 Msa0038980:intron 10.0%
!!! TTGTAATAATTCTTTAAAAA+TGG + chr1_1:68489998-68490017 Msa0038980:intron 10.0%
!! TCTATAAAGTAAATAATAAT+AGG + chr1_1:68490023-68490042 Msa0038980:intron 10.0%
!! CTAATTGATTAAATAAATAA+TGG - chr1_1:68490509-68490528 None:intergenic 10.0%
!! AAAACATTAAAAATGAAAAT+AGG - chr1_1:68489142-68489161 None:intergenic 10.0%
!!! AATTTTATTTACTCAATTTT+AGG + chr1_1:68489205-68489224 Msa0038980:intron 10.0%
!!! ATTTTATTTACTCAATTTTA+GGG + chr1_1:68489206-68489225 Msa0038980:intron 10.0%
!!! TTTTTTTATTTATTTGGATT+TGG + chr1_1:68489363-68489382 Msa0038980:intron 10.0%
!! AAATGTATAAAGTAAATAAT+AGG + chr1_1:68489802-68489821 Msa0038980:intron 10.0%
!!! TTGTAATAATTCTTTAAAAA+TGG + chr1_1:68489998-68490017 Msa0038980:intron 10.0%
!! TCTATAAAGTAAATAATAAT+AGG + chr1_1:68490023-68490042 Msa0038980:intron 10.0%
!! CTAATTGATTAAATAAATAA+TGG - chr1_1:68490509-68490528 None:intergenic 10.0%
!! ACATTTCAATAAACATAAAA+AGG - chr1_1:68489428-68489447 None:intergenic 15.0%
!! ATAAGAAATTAAGAATTACA+AGG - chr1_1:68489674-68489693 None:intergenic 15.0%
!! AAAGAATTATTACAACTTTA+AGG - chr1_1:68489993-68490012 None:intergenic 15.0%
!! ACTACAAAACAAAAATATAT+TGG - chr1_1:68490411-68490430 None:intergenic 15.0%
!! ACATTTCAATAAACATAAAA+AGG - chr1_1:68489428-68489447 None:intergenic 15.0%
!! ATAAGAAATTAAGAATTACA+AGG - chr1_1:68489674-68489693 None:intergenic 15.0%
!! AAAGAATTATTACAACTTTA+AGG - chr1_1:68489993-68490012 None:intergenic 15.0%
!! ACTACAAAACAAAAATATAT+TGG - chr1_1:68490411-68490430 None:intergenic 15.0%
!!! TTCCATTCACATTTTTTTTT+AGG + chr1_1:68489092-68489111 Msa0038980:intron 20.0%
!! TTCCTAAAAAAAAATGTGAA+TGG - chr1_1:68489097-68489116 None:intergenic 20.0%
!!! CACATTTTTTTTTAGGAAAT+TGG + chr1_1:68489099-68489118 Msa0038980:intron 20.0%
!!! TTATTTTTCGTCATATGTTA+TGG + chr1_1:68489645-68489664 Msa0038980:intron 20.0%
!!! AAATTGTTGTTGTTTGTTAT+AGG + chr1_1:68489744-68489763 Msa0038980:intron 20.0%
!!! GATGTAATAATTCTTTAAAG+TGG + chr1_1:68489779-68489798 Msa0038980:intron 20.0%
!! TAGTTATTGAGAATTATCTT+TGG + chr1_1:68489847-68489866 Msa0038980:intron 20.0%
!!! CATAAATTGTTTATTTCTGT+TGG + chr1_1:68489951-68489970 Msa0038980:intron 20.0%
!! ATAATAATAGGATTGTGTAA+TGG + chr1_1:68490035-68490054 Msa0038980:intron 20.0%
!! TGAGATTTATGAATATGAAA+TGG - chr1_1:68490096-68490115 None:intergenic 20.0%
!! TCAGATTTATGAATATGAAA+TGG - chr1_1:68490191-68490210 None:intergenic 20.0%
!!! AGATATAGAAATTTGAGTTT+AGG + chr1_1:68490268-68490287 Msa0038980:intron 20.0%
!!! TTCCATTCACATTTTTTTTT+AGG + chr1_1:68489092-68489111 Msa0038980:intron 20.0%
!! TTCCTAAAAAAAAATGTGAA+TGG - chr1_1:68489097-68489116 None:intergenic 20.0%
!!! CACATTTTTTTTTAGGAAAT+TGG + chr1_1:68489099-68489118 Msa0038980:intron 20.0%
!!! TTATTTTTCGTCATATGTTA+TGG + chr1_1:68489645-68489664 Msa0038980:intron 20.0%
!!! AAATTGTTGTTGTTTGTTAT+AGG + chr1_1:68489744-68489763 Msa0038980:intron 20.0%
!!! GATGTAATAATTCTTTAAAG+TGG + chr1_1:68489779-68489798 Msa0038980:intron 20.0%
!! TAGTTATTGAGAATTATCTT+TGG + chr1_1:68489847-68489866 Msa0038980:intron 20.0%
!!! CATAAATTGTTTATTTCTGT+TGG + chr1_1:68489951-68489970 Msa0038980:intron 20.0%
!! ATAATAATAGGATTGTGTAA+TGG + chr1_1:68490035-68490054 Msa0038980:intron 20.0%
!! TGAGATTTATGAATATGAAA+TGG - chr1_1:68490096-68490115 None:intergenic 20.0%
!! TCAGATTTATGAATATGAAA+TGG - chr1_1:68490191-68490210 None:intergenic 20.0%
!!! AGATATAGAAATTTGAGTTT+AGG + chr1_1:68490268-68490287 Msa0038980:intron 20.0%
! ATTATACACTGATCTGAATT+AGG + chr1_1:68489266-68489285 Msa0038980:intron 25.0%
!!! TTAATCTCATTGATTTGCTT+AGG - chr1_1:68489453-68489472 None:intergenic 25.0%
! TAAGCAAATCAATGAGATTA+AGG + chr1_1:68489452-68489471 Msa0038980:CDS 25.0%
! AAAAATAATTCTCACTAACC+TGG - chr1_1:68489633-68489652 None:intergenic 25.0%
! TTATCTTTGGTTGTATGTTA+TGG + chr1_1:68489860-68489879 Msa0038980:intron 25.0%
!!! TTATTTCTGTTGGTTGTTAT+AGG + chr1_1:68489961-68489980 Msa0038980:intron 25.0%
! TCATATTCATAAATCTCAAC+TGG + chr1_1:68490098-68490117 Msa0038980:intron 25.0%
! CATATTCATAAATCTCAACT+GGG + chr1_1:68490099-68490118 Msa0038980:intron 25.0%
! TTATGAATATGAAATGGAAG+AGG - chr1_1:68490185-68490204 None:intergenic 25.0%
! AAAAACATGTAAGAAACAAC+TGG - chr1_1:68490558-68490577 None:intergenic 25.0%
! ATTATACACTGATCTGAATT+AGG + chr1_1:68489266-68489285 Msa0038980:intron 25.0%
!!! TTAATCTCATTGATTTGCTT+AGG - chr1_1:68489453-68489472 None:intergenic 25.0%
! TAAGCAAATCAATGAGATTA+AGG + chr1_1:68489452-68489471 Msa0038980:CDS 25.0%
! AAAAATAATTCTCACTAACC+TGG - chr1_1:68489633-68489652 None:intergenic 25.0%
! TTATCTTTGGTTGTATGTTA+TGG + chr1_1:68489860-68489879 Msa0038980:intron 25.0%
!!! TTATTTCTGTTGGTTGTTAT+AGG + chr1_1:68489961-68489980 Msa0038980:intron 25.0%
! TCATATTCATAAATCTCAAC+TGG + chr1_1:68490098-68490117 Msa0038980:intron 25.0%
! CATATTCATAAATCTCAACT+GGG + chr1_1:68490099-68490118 Msa0038980:intron 25.0%
! TTATGAATATGAAATGGAAG+AGG - chr1_1:68490185-68490204 None:intergenic 25.0%
! AAAAACATGTAAGAAACAAC+TGG - chr1_1:68490558-68490577 None:intergenic 25.0%
GAACCATGTAATTGAAACAT+TGG + chr1_1:68489235-68489254 Msa0038980:intron 30.0%
ACTCCAATGTTTCAATTACA+TGG - chr1_1:68489241-68489260 None:intergenic 30.0%
TGATCTGAATTAGGTGATTT+AGG + chr1_1:68489275-68489294 Msa0038980:intron 30.0%
GATCTGAATTAGGTGATTTA+GGG + chr1_1:68489276-68489295 Msa0038980:intron 30.0%
! TCAAACTTGGTAGTTGTTAA+AGG + chr1_1:68489309-68489328 Msa0038980:intron 30.0%
! CAAACTTGGTAGTTGTTAAA+GGG + chr1_1:68489310-68489329 Msa0038980:intron 30.0%
! TGGATTTTTGTGTTGTGATT+TGG + chr1_1:68489383-68489402 Msa0038980:intron 30.0%
! TTTGCTTCTCTTGATTTTCA+CGG - chr1_1:68489514-68489533 None:intergenic 30.0%
TTGTTATAGGTGTAAGCTTA+AGG + chr1_1:68489757-68489776 Msa0038980:intron 30.0%
!! TACTTTCAAGTTTCAACTCT+AGG + chr1_1:68489912-68489931 Msa0038980:intron 30.0%
TGTAATGGCCAAATAGATAT+GGG + chr1_1:68490050-68490069 Msa0038980:intron 30.0%
TTGGGAACAACTTATGATAT+GGG + chr1_1:68490145-68490164 Msa0038980:intron 30.0%
TCATATTCATAAATCTGAGC+TGG + chr1_1:68490193-68490212 Msa0038980:intron 30.0%
AGTGAAACGTAAATGTAAGT+AGG - chr1_1:68490298-68490317 None:intergenic 30.0%
! TCAATCATCAGAAAGCTTTT+AGG + chr1_1:68490624-68490643 Msa0038980:three_prime_UTR 30.0%
GAACCATGTAATTGAAACAT+TGG + chr1_1:68489235-68489254 Msa0038980:intron 30.0%
ACTCCAATGTTTCAATTACA+TGG - chr1_1:68489241-68489260 None:intergenic 30.0%
TGATCTGAATTAGGTGATTT+AGG + chr1_1:68489275-68489294 Msa0038980:intron 30.0%
GATCTGAATTAGGTGATTTA+GGG + chr1_1:68489276-68489295 Msa0038980:intron 30.0%
! TCAAACTTGGTAGTTGTTAA+AGG + chr1_1:68489309-68489328 Msa0038980:intron 30.0%
! CAAACTTGGTAGTTGTTAAA+GGG + chr1_1:68489310-68489329 Msa0038980:intron 30.0%
! TGGATTTTTGTGTTGTGATT+TGG + chr1_1:68489383-68489402 Msa0038980:intron 30.0%
! TTTGCTTCTCTTGATTTTCA+CGG - chr1_1:68489514-68489533 None:intergenic 30.0%
TTGTTATAGGTGTAAGCTTA+AGG + chr1_1:68489757-68489776 Msa0038980:intron 30.0%
!! TACTTTCAAGTTTCAACTCT+AGG + chr1_1:68489912-68489931 Msa0038980:intron 30.0%
TGTAATGGCCAAATAGATAT+GGG + chr1_1:68490050-68490069 Msa0038980:intron 30.0%
TTGGGAACAACTTATGATAT+GGG + chr1_1:68490145-68490164 Msa0038980:intron 30.0%
TCATATTCATAAATCTGAGC+TGG + chr1_1:68490193-68490212 Msa0038980:intron 30.0%
AGTGAAACGTAAATGTAAGT+AGG - chr1_1:68490298-68490317 None:intergenic 30.0%
! TCAATCATCAGAAAGCTTTT+AGG + chr1_1:68490624-68490643 Msa0038980:three_prime_UTR 30.0%
TCGAAGCGAAGACAAAAAAA+TGG + chr1_1:68489021-68489040 Msa0038980:exon 35.0%
GAAACACTGCAAAGAATCAA+TGG - chr1_1:68489062-68489081 None:intergenic 35.0%
! TTGTGTTGTGATTTGGAAGA+TGG + chr1_1:68489390-68489409 Msa0038980:intron 35.0%
CAAAGATGTTGTCAAGTTCA+AGG + chr1_1:68489530-68489549 Msa0038980:CDS 35.0%
ACAAAGTGTGTACAAGTACT+TGG - chr1_1:68489565-68489584 None:intergenic 35.0%
AATAATTCTCACTAACCTGG+AGG - chr1_1:68489630-68489649 None:intergenic 35.0%
! TTCTGTTGGTTGTTATAGGT+TGG + chr1_1:68489965-68489984 Msa0038980:intron 35.0%
GTGTAATGGCCAAATAGATA+TGG + chr1_1:68490049-68490068 Msa0038980:intron 35.0%
GTAATGGCCAAATAGATATG+GGG + chr1_1:68490051-68490070 Msa0038980:intron 35.0%
ATATCCTCCCCATATCTATT+TGG - chr1_1:68490061-68490080 None:intergenic 35.0%
!!! TGCTATTTTTCTCTCTCACT+TGG + chr1_1:68490126-68490145 Msa0038980:intron 35.0%
!!! GCTATTTTTCTCTCTCACTT+GGG + chr1_1:68490127-68490146 Msa0038980:intron 35.0%
CTTGGGAACAACTTATGATA+TGG + chr1_1:68490144-68490163 Msa0038980:intron 35.0%
TGGGAACAACTTATGATATG+GGG + chr1_1:68490146-68490165 Msa0038980:intron 35.0%
!!! GTTATTTTTCTCTCACTGCT+AGG + chr1_1:68490222-68490241 Msa0038980:intron 35.0%
!! CATTTACGTTTCACTTTTGC+AGG + chr1_1:68490303-68490322 Msa0038980:intron 35.0%
GCAAGACTTGTAATTCTATC+TGG + chr1_1:68490335-68490354 Msa0038980:exon 35.0%
TCAAAATGAGAGTTGTAAGC+TGG - chr1_1:68490448-68490467 None:intergenic 35.0%
!! TGTTTTTGAGCTAAGCCAAT+AGG + chr1_1:68490571-68490590 Msa0038980:three_prime_UTR 35.0%
!! GTTTTTGAGCTAAGCCAATA+GGG + chr1_1:68490572-68490591 Msa0038980:three_prime_UTR 35.0%
!! TTTTTGAGCTAAGCCAATAG+GGG + chr1_1:68490573-68490592 Msa0038980:three_prime_UTR 35.0%
TCGAAGCGAAGACAAAAAAA+TGG + chr1_1:68489021-68489040 Msa0038980:exon 35.0%
GAAACACTGCAAAGAATCAA+TGG - chr1_1:68489062-68489081 None:intergenic 35.0%
! TTGTGTTGTGATTTGGAAGA+TGG + chr1_1:68489390-68489409 Msa0038980:intron 35.0%
CAAAGATGTTGTCAAGTTCA+AGG + chr1_1:68489530-68489549 Msa0038980:CDS 35.0%
ACAAAGTGTGTACAAGTACT+TGG - chr1_1:68489565-68489584 None:intergenic 35.0%
AATAATTCTCACTAACCTGG+AGG - chr1_1:68489630-68489649 None:intergenic 35.0%
! TTCTGTTGGTTGTTATAGGT+TGG + chr1_1:68489965-68489984 Msa0038980:intron 35.0%
GTGTAATGGCCAAATAGATA+TGG + chr1_1:68490049-68490068 Msa0038980:intron 35.0%
GTAATGGCCAAATAGATATG+GGG + chr1_1:68490051-68490070 Msa0038980:intron 35.0%
ATATCCTCCCCATATCTATT+TGG - chr1_1:68490061-68490080 None:intergenic 35.0%
!!! TGCTATTTTTCTCTCTCACT+TGG + chr1_1:68490126-68490145 Msa0038980:intron 35.0%
!!! GCTATTTTTCTCTCTCACTT+GGG + chr1_1:68490127-68490146 Msa0038980:intron 35.0%
CTTGGGAACAACTTATGATA+TGG + chr1_1:68490144-68490163 Msa0038980:intron 35.0%
TGGGAACAACTTATGATATG+GGG + chr1_1:68490146-68490165 Msa0038980:intron 35.0%
!!! GTTATTTTTCTCTCACTGCT+AGG + chr1_1:68490222-68490241 Msa0038980:intron 35.0%
!! CATTTACGTTTCACTTTTGC+AGG + chr1_1:68490303-68490322 Msa0038980:intron 35.0%
GCAAGACTTGTAATTCTATC+TGG + chr1_1:68490335-68490354 Msa0038980:exon 35.0%
TCAAAATGAGAGTTGTAAGC+TGG - chr1_1:68490448-68490467 None:intergenic 35.0%
!! TGTTTTTGAGCTAAGCCAAT+AGG + chr1_1:68490571-68490590 Msa0038980:three_prime_UTR 35.0%
!! GTTTTTGAGCTAAGCCAATA+GGG + chr1_1:68490572-68490591 Msa0038980:three_prime_UTR 35.0%
!! TTTTTGAGCTAAGCCAATAG+GGG + chr1_1:68490573-68490592 Msa0038980:three_prime_UTR 35.0%
TCCTCCCCAAAATTCACAAT+CGG - chr1_1:68488993-68489012 None:intergenic 40.0%
! GGGCTTTTGATCTTCAAACT+TGG + chr1_1:68489296-68489315 Msa0038980:intron 40.0%
TCAAGTTTCAACTCTAGGTG+CGG + chr1_1:68489917-68489936 Msa0038980:intron 40.0%
AGCAACAGTTGATCTTCACT+CGG - chr1_1:68490372-68490391 None:intergenic 40.0%
! GTGAAGATCAACTGTTGCTT+TGG + chr1_1:68490373-68490392 Msa0038980:three_prime_UTR 40.0%
GTACGACAAGAAAATAGAGC+TGG - chr1_1:68490476-68490495 None:intergenic 40.0%
CTAAGCCAATAGGGGTTAAT+TGG + chr1_1:68490581-68490600 Msa0038980:three_prime_UTR 40.0%
ACCATCCAATTAACCCCTAT+TGG - chr1_1:68490589-68490608 None:intergenic 40.0%
TCCTCCCCAAAATTCACAAT+CGG - chr1_1:68488993-68489012 None:intergenic 40.0%
! GGGCTTTTGATCTTCAAACT+TGG + chr1_1:68489296-68489315 Msa0038980:intron 40.0%
TCAAGTTTCAACTCTAGGTG+CGG + chr1_1:68489917-68489936 Msa0038980:intron 40.0%
AGCAACAGTTGATCTTCACT+CGG - chr1_1:68490372-68490391 None:intergenic 40.0%
! GTGAAGATCAACTGTTGCTT+TGG + chr1_1:68490373-68490392 Msa0038980:three_prime_UTR 40.0%
GTACGACAAGAAAATAGAGC+TGG - chr1_1:68490476-68490495 None:intergenic 40.0%
CTAAGCCAATAGGGGTTAAT+TGG + chr1_1:68490581-68490600 Msa0038980:three_prime_UTR 40.0%
ACCATCCAATTAACCCCTAT+TGG - chr1_1:68490589-68490608 None:intergenic 40.0%
!!! AGCGTGCCGATTGTGAATTT+TGG + chr1_1:68488984-68489003 Msa0038980:five_prime_UTR 45.0%
!!! GCGTGCCGATTGTGAATTTT+GGG + chr1_1:68488985-68489004 Msa0038980:five_prime_UTR 45.0%
!!! CGTGCCGATTGTGAATTTTG+GGG + chr1_1:68488986-68489005 Msa0038980:five_prime_UTR 45.0%
!! TGTGAATTTTGGGGAGGAAG+AGG + chr1_1:68488995-68489014 Msa0038980:five_prime_UTR 45.0%
TTGAAGCAATCACTTCCTCC+AGG + chr1_1:68489612-68489631 Msa0038980:CDS 45.0%
ATGGCCAAATAGATATGGGG+AGG + chr1_1:68490054-68490073 Msa0038980:intron 45.0%
AGATATGGGGAGGATATTGC+AGG + chr1_1:68490064-68490083 Msa0038980:intron 45.0%
GCCAATAGGGGTTAATTGGA+TGG + chr1_1:68490585-68490604 Msa0038980:three_prime_UTR 45.0%
!!! AGCGTGCCGATTGTGAATTT+TGG + chr1_1:68488984-68489003 Msa0038980:five_prime_UTR 45.0%
!!! GCGTGCCGATTGTGAATTTT+GGG + chr1_1:68488985-68489004 Msa0038980:five_prime_UTR 45.0%
!!! CGTGCCGATTGTGAATTTTG+GGG + chr1_1:68488986-68489005 Msa0038980:five_prime_UTR 45.0%
!! TGTGAATTTTGGGGAGGAAG+AGG + chr1_1:68488995-68489014 Msa0038980:five_prime_UTR 45.0%
TTGAAGCAATCACTTCCTCC+AGG + chr1_1:68489612-68489631 Msa0038980:CDS 45.0%
ATGGCCAAATAGATATGGGG+AGG + chr1_1:68490054-68490073 Msa0038980:intron 45.0%
AGATATGGGGAGGATATTGC+AGG + chr1_1:68490064-68490083 Msa0038980:intron 45.0%
GCCAATAGGGGTTAATTGGA+TGG + chr1_1:68490585-68490604 Msa0038980:three_prime_UTR 45.0%
!!! TTCTATTTTTTTTATTTATT+TGG + chr1_1:68489357-68489376 Msa0038980:intron 5.0%
!!! TTCTATTTTTTTTATTTATT+TGG + chr1_1:68489357-68489376 Msa0038980:intron 5.0%
ATCGGCACGCTCAAGTTTCA+AGG - chr1_1:68488975-68488994 None:intergenic 50.0%
!! GCCGATTGTGAATTTTGGGG+AGG + chr1_1:68488989-68489008 Msa0038980:five_prime_UTR 50.0%
ATCGGCACGCTCAAGTTTCA+AGG - chr1_1:68488975-68488994 None:intergenic 50.0%
!! GCCGATTGTGAATTTTGGGG+AGG + chr1_1:68488989-68489008 Msa0038980:five_prime_UTR 50.0%
AGGACTTCCTCCTCACTGCT+AGG + chr1_1:68489472-68489491 Msa0038980:CDS 55.0%
ACTTCCTCCTCACTGCTAGG+AGG + chr1_1:68489475-68489494 Msa0038980:CDS 55.0%
AGGACTTCCTCCTCACTGCT+AGG + chr1_1:68489472-68489491 Msa0038980:CDS 55.0%
ACTTCCTCCTCACTGCTAGG+AGG + chr1_1:68489475-68489494 Msa0038980:CDS 55.0%
CCTTCCTCCTAGCAGTGAGG+AGG - chr1_1:68489482-68489501 None:intergenic 60.0%
CCTCCTCACTGCTAGGAGGA+AGG + chr1_1:68489479-68489498 Msa0038980:CDS 60.0%
CGTCCTTCCTCCTAGCAGTG+AGG - chr1_1:68489485-68489504 None:intergenic 60.0%
CCTTCCTCCTAGCAGTGAGG+AGG - chr1_1:68489482-68489501 None:intergenic 60.0%
CCTCCTCACTGCTAGGAGGA+AGG + chr1_1:68489479-68489498 Msa0038980:CDS 60.0%
CGTCCTTCCTCCTAGCAGTG+AGG - chr1_1:68489485-68489504 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68488961 68490659 68488961 ID=Msa0038980;Name=Msa0038980
chr1_1 mRNA 68488961 68490659 68488961 ID=Msa0038980-mRNA-1;Parent=Msa0038980;Name=Msa0038980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=79|1|1|1|1|1|3|312|69
chr1_1 exon 68488961 68489042 68488961 ID=Msa0038980-mRNA-1:exon:22338;Parent=Msa0038980-mRNA-1
chr1_1 exon 68489450 68489633 68489450 ID=Msa0038980-mRNA-1:exon:22339;Parent=Msa0038980-mRNA-1
chr1_1 exon 68490325 68490659 68490325 ID=Msa0038980-mRNA-1:exon:22340;Parent=Msa0038980-mRNA-1
chr1_1 five_prime_UTR 68488961 68489039 68488961 ID=Msa0038980-mRNA-1:five_prime_utr;Parent=Msa0038980-mRNA-1
chr1_1 CDS 68489040 68489042 68489040 ID=Msa0038980-mRNA-1:cds;Parent=Msa0038980-mRNA-1
chr1_1 CDS 68489450 68489633 68489450 ID=Msa0038980-mRNA-1:cds;Parent=Msa0038980-mRNA-1
chr1_1 CDS 68490325 68490347 68490325 ID=Msa0038980-mRNA-1:cds;Parent=Msa0038980-mRNA-1
chr1_1 three_prime_UTR 68490348 68490659 68490348 ID=Msa0038980-mRNA-1:three_prime_utr;Parent=Msa0038980-mRNA-1
Gene Sequence

>Msa0038980

ATGCCTAAGCAAATCAATGAGATTAAGGACTTCCTCCTCACTGCTAGGAGGAAGGACGCACGCTCCGTGAAAATCAAGAGAAGCAAAGATGTTGTCAAGTTCAAGGTTAGATGCTCCAAGTACTTGTACACACTTTGTGTGTTTGATACTGAGAAAGCTGATAAGTTGAAGCAATCACTTCCTCCAGGTTTGAATGTGCAAGACTTGTAA
Protein sequence

>Msa0038980

MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLNVQDL*