Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356790 | KEH27428.1 | 99.515 | 206 | 1 | 0 | 5 | 210 | 2 | 207 | 2.49e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356790 | sp|Q9SW09|RS101_ARATH | 81.935 | 155 | 23 | 1 | 31 | 185 | 1 | 150 | 2.83e-78 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356790 | A0A072UEC5 | 99.515 | 206 | 1 | 0 | 5 | 210 | 2 | 207 | 1.19e-146 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1356790 | 0.875805 | 2.306440e-68 | -8.615850e-47 |
| Msa0002790 | Msa1356790 | 0.885760 | 6.159343e-72 | -8.615850e-47 |
| Msa0022970 | Msa1356790 | 0.818454 | 1.943517e-52 | -8.615850e-47 |
| Msa0027590 | Msa1356790 | 0.814861 | 1.241693e-51 | -8.615850e-47 |
| Msa0032780 | Msa1356790 | 0.826531 | 2.577475e-54 | -8.615850e-47 |
| Msa0032810 | Msa1356790 | 0.805665 | 1.196514e-49 | -8.615850e-47 |
| Msa0038980 | Msa1356790 | 0.801982 | 6.963539e-49 | -8.615850e-47 |
| Msa0045730 | Msa1356790 | 0.884212 | 2.325681e-71 | -8.615850e-47 |
| Msa0049690 | Msa1356790 | 0.827909 | 1.205639e-54 | -8.615850e-47 |
| Msa0075350 | Msa1356790 | 0.840171 | 1.020954e-57 | -8.615850e-47 |
| Msa0097580 | Msa1356790 | 0.810058 | 1.392359e-50 | -8.615850e-47 |
| Msa0116130 | Msa1356790 | 0.867399 | 1.408080e-65 | -8.615850e-47 |
| Msa0116670 | Msa1356790 | 0.859277 | 4.622664e-63 | -8.615850e-47 |
| Msa0118710 | Msa1356790 | 0.815623 | 8.407945e-52 | -8.615850e-47 |
| Msa1349570 | Msa1356790 | 0.891736 | 3.025553e-74 | -8.615850e-47 |
| Msa1352140 | Msa1356790 | 0.818177 | 2.245583e-52 | -8.615850e-47 |
| Msa1356790 | Msa1362790 | 0.902291 | 1.126066e-78 | -8.615850e-47 |
| Msa1356790 | Msa1363330 | 0.828361 | 9.381967e-55 | -8.615850e-47 |
| Msa1356790 | Msa1366180 | 0.873532 | 1.367447e-67 | -8.615850e-47 |
| Msa1356790 | Msa1368920 | 0.887797 | 1.040003e-72 | -8.615850e-47 |
| Msa1356790 | Msa1369190 | 0.896308 | 4.180087e-76 | -8.615850e-47 |
| Msa1356790 | Msa1374240 | 0.878495 | 2.681376e-69 | -8.615850e-47 |
| Msa1356790 | Msa1386600 | 0.827728 | 1.332965e-54 | -8.615850e-47 |
| Msa1356790 | Msa1387410 | 0.853548 | 2.222211e-61 | -8.615850e-47 |
| Msa1356790 | Msa1392590 | 0.887456 | 1.404296e-72 | -8.615850e-47 |
| Msa1356790 | Msa1397100 | 0.843916 | 1.044176e-58 | -8.615850e-47 |
| Msa1356790 | Msa1403910 | 0.868283 | 7.323270e-66 | -8.615850e-47 |
| Msa1356790 | Msa1406080 | 0.866772 | 2.232573e-65 | -8.615850e-47 |
| Msa1356790 | Msa1407070 | 0.829535 | 4.875557e-55 | -8.615850e-47 |
| Msa1356790 | Msa1413260 | 0.801146 | 1.033448e-48 | -8.615850e-47 |
| Msa1356790 | Msa1413500 | 0.888952 | 3.737270e-73 | -8.615850e-47 |
| Msa1356790 | Msa1418770 | 0.816918 | 4.316892e-52 | -8.615850e-47 |
| Msa1356790 | Msa1425670 | 0.817556 | 3.101255e-52 | -8.615850e-47 |
| Msa1356790 | Msa1426120 | 0.840657 | 7.618836e-58 | -8.615850e-47 |
| Msa1356790 | Msa1426370 | 0.861705 | 8.500952e-64 | -8.615850e-47 |
| Msa1356790 | Msa1426490 | 0.899186 | 2.543706e-77 | -8.615850e-47 |
| Msa1356790 | Msa1427560 | 0.826968 | 2.026969e-54 | -8.615850e-47 |
| Msa1356790 | Msa1433310 | 0.806419 | 8.302274e-50 | -8.615850e-47 |
| Msa1356790 | Msa1437280 | 0.836369 | 9.744585e-57 | -8.615850e-47 |
| Msa1356790 | Msa1448690 | 0.800832 | 1.197747e-48 | -8.615850e-47 |
| Msa1356790 | Msa1450280 | 0.831851 | 1.320266e-55 | -8.615850e-47 |
| Msa1356790 | Msa1455950 | 0.846294 | 2.377070e-59 | -8.615850e-47 |
| Msa1356790 | Msa1456050 | 0.881131 | 3.096124e-70 | -8.615850e-47 |
| Msa1356790 | Msa1462860 | 0.849890 | 2.417661e-60 | -8.615850e-47 |
| Msa1356790 | Msa1465260 | 0.808590 | 2.873768e-50 | -8.615850e-47 |
| Msa0604960 | Msa1356790 | 0.878814 | 2.071059e-69 | -8.615850e-47 |
| Msa0617540 | Msa1356790 | 0.864077 | 1.576041e-64 | -8.615850e-47 |
| Msa0622750 | Msa1356790 | 0.884265 | 2.223143e-71 | -8.615850e-47 |
| Msa0623200 | Msa1356790 | 0.879245 | 1.459038e-69 | -8.615850e-47 |
| Msa0625570 | Msa1356790 | 0.826573 | 2.519321e-54 | -8.615850e-47 |
| Msa0643820 | Msa1356790 | 0.830000 | 3.757288e-55 | -8.615850e-47 |
| Msa0656410 | Msa1356790 | 0.811139 | 8.128914e-51 | -8.615850e-47 |
| Msa0666230 | Msa1356790 | 0.818691 | 1.717468e-52 | -8.615850e-47 |
| Msa0683660 | Msa1356790 | 0.831341 | 1.763693e-55 | -8.615850e-47 |
| Msa0698780 | Msa1356790 | 0.808816 | 2.572028e-50 | -8.615850e-47 |
| Msa0705800 | Msa1356790 | 0.909848 | 3.615537e-82 | -8.615850e-47 |
| Msa0709280 | Msa1356790 | 0.803902 | 2.792372e-49 | -8.615850e-47 |
| Msa0712610 | Msa1356790 | 0.991620 | 1.269249e-188 | -8.615850e-47 |
| Msa0729200 | Msa1356790 | 0.902484 | 9.248476e-79 | -8.615850e-47 |
| Msa0752910 | Msa1356790 | 0.901814 | 1.830535e-78 | -8.615850e-47 |
| Msa0766080 | Msa1356790 | 0.828370 | 9.336130e-55 | -8.615850e-47 |
| Msa0769590 | Msa1356790 | 0.897359 | 1.517466e-76 | -8.615850e-47 |
| Msa0781080 | Msa1356790 | 0.897252 | 1.683193e-76 | -8.615850e-47 |
| Msa0785130 | Msa1356790 | 0.849975 | 2.289767e-60 | -8.615850e-47 |
| Msa0786660 | Msa1356790 | 0.822604 | 2.167159e-53 | -8.615850e-47 |
| Msa0788380 | Msa1356790 | 0.831556 | 1.560829e-55 | -8.615850e-47 |
| Msa0792420 | Msa1356790 | 0.904828 | 8.159665e-80 | -8.615850e-47 |
| Msa0806880 | Msa1356790 | 0.885427 | 8.206978e-72 | -8.615850e-47 |
| Msa0817540 | Msa1356790 | 0.835356 | 1.759764e-56 | -8.615850e-47 |
| Msa0822580 | Msa1356790 | 0.860992 | 1.402196e-63 | -8.615850e-47 |
| Msa0827380 | Msa1356790 | 0.861602 | 9.141770e-64 | -8.615850e-47 |
| Msa0123010 | Msa1356790 | 0.837334 | 5.528000e-57 | -8.615850e-47 |
| Msa0133540 | Msa1356790 | 0.872165 | 3.920956e-67 | -8.615850e-47 |
| Msa0138890 | Msa1356790 | 0.845655 | 3.547183e-59 | -8.615850e-47 |
| Msa0146340 | Msa1356790 | 0.834754 | 2.495967e-56 | -8.615850e-47 |
| Msa0167480 | Msa1356790 | 0.802458 | 5.557220e-49 | -8.615850e-47 |
| Msa0173530 | Msa1356790 | 0.854811 | 9.597938e-62 | -8.615850e-47 |
| Msa0181490 | Msa1356790 | 0.875726 | 2.455705e-68 | -8.615850e-47 |
| Msa0187930 | Msa1356790 | 0.803539 | 3.322198e-49 | -8.615850e-47 |
| Msa0191450 | Msa1356790 | 0.841055 | 5.991081e-58 | -8.615850e-47 |
| Msa0191550 | Msa1356790 | 0.815320 | 9.822763e-52 | -8.615850e-47 |
| Msa0192750 | Msa1356790 | 0.868755 | 5.159415e-66 | -8.615850e-47 |
| Msa0194940 | Msa1356790 | 0.813186 | 2.907466e-51 | -8.615850e-47 |
| Msa0197980 | Msa1356790 | 0.813956 | 1.968046e-51 | -8.615850e-47 |
| Msa0210330 | Msa1356790 | 0.848818 | 4.810849e-60 | -8.615850e-47 |
| Msa0210360 | Msa1356790 | 0.880514 | 5.155743e-70 | -8.615850e-47 |
| Msa0218830 | Msa1356790 | 0.857471 | 1.595891e-62 | -8.615850e-47 |
| Msa0219120 | Msa1356790 | 0.867472 | 1.334280e-65 | -8.615850e-47 |
| Msa0221030 | Msa1356790 | 0.867180 | 1.654571e-65 | -8.615850e-47 |
| Msa0222730 | Msa1356790 | 0.814755 | 1.310575e-51 | -8.615850e-47 |
| Msa0224560 | Msa1356790 | 0.869527 | 2.897456e-66 | -8.615850e-47 |
| Msa0229150 | Msa1356790 | 0.856957 | 2.263353e-62 | -8.615850e-47 |
| Msa0230490 | Msa1356790 | 0.824112 | 9.629892e-54 | -8.615850e-47 |
| Msa0235050 | Msa1356790 | 0.805949 | 1.042594e-49 | -8.615850e-47 |
| Msa1240270 | Msa1356790 | 0.862365 | 5.335420e-64 | -8.615850e-47 |
| Msa1241190 | Msa1356790 | 0.810107 | 1.358842e-50 | -8.615850e-47 |
| Msa1256840 | Msa1356790 | 0.891673 | 3.205041e-74 | -8.615850e-47 |
| Msa1273340 | Msa1356790 | 0.809115 | 2.218816e-50 | -8.615850e-47 |
| Msa1295150 | Msa1356790 | 0.843126 | 1.697340e-58 | -8.615850e-47 |
| Msa1295170 | Msa1356790 | 0.811651 | 6.293938e-51 | -8.615850e-47 |
| Msa1305050 | Msa1356790 | 0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa1311400 | Msa1356790 | 0.860591 | 1.856826e-63 | -8.615850e-47 |
| Msa1316680 | Msa1356790 | 0.824289 | 8.750536e-54 | -8.615850e-47 |
| Msa1321790 | Msa1356790 | 0.871247 | 7.903548e-67 | -8.615850e-47 |
| Msa1331710 | Msa1356790 | 0.808683 | 2.745118e-50 | -8.615850e-47 |
| Msa1332250 | Msa1356790 | 0.845291 | 4.451287e-59 | -8.615850e-47 |
| Msa1338190 | Msa1356790 | 0.856120 | 3.988612e-62 | -8.615850e-47 |
| Msa0369410 | Msa1356790 | 0.809127 | 2.206444e-50 | -8.615850e-47 |
| Msa0376830 | Msa1356790 | 0.800693 | 1.278347e-48 | -8.615850e-47 |
| Msa0443390 | Msa1356790 | 0.843120 | 1.703910e-58 | -8.615850e-47 |
| Msa0463520 | Msa1356790 | 0.827264 | 1.721921e-54 | -8.615850e-47 |
| Msa0471880 | Msa1356790 | 0.838619 | 2.581659e-57 | -8.615850e-47 |
| Msa0481520 | Msa1356790 | 0.848041 | 7.887882e-60 | -8.615850e-47 |
| Msa0481850 | Msa1356790 | 0.938599 | 5.155246e-99 | -8.615850e-47 |
| Msa1010310 | Msa1356790 | 0.825454 | 4.645805e-54 | -8.615850e-47 |
| Msa1019240 | Msa1356790 | 0.829817 | 4.162728e-55 | -8.615850e-47 |
| Msa1019260 | Msa1356790 | 0.822259 | 2.606500e-53 | -8.615850e-47 |
| Msa1021120 | Msa1356790 | 0.866448 | 2.829519e-65 | -8.615850e-47 |
| Msa1037290 | Msa1356790 | 0.889292 | 2.758951e-73 | -8.615850e-47 |
| Msa1039470 | Msa1356790 | 0.805537 | 1.272365e-49 | -8.615850e-47 |
| Msa1039520 | Msa1356790 | 0.841368 | 4.958867e-58 | -8.615850e-47 |
| Msa1040160 | Msa1356790 | 0.835768 | 1.384410e-56 | -8.615850e-47 |
| Msa1042780 | Msa1356790 | 0.822859 | 1.890679e-53 | -8.615850e-47 |
| Msa1048690 | Msa1356790 | 0.827077 | 1.909592e-54 | -8.615850e-47 |
| Msa1058700 | Msa1356790 | 0.828584 | 8.288451e-55 | -8.615850e-47 |
| Msa1072710 | Msa1356790 | 0.822138 | 2.780381e-53 | -8.615850e-47 |
| Msa1078870 | Msa1356790 | 0.836210 | 1.069318e-56 | -8.615850e-47 |
| Msa1078980 | Msa1356790 | 0.806220 | 9.143891e-50 | -8.615850e-47 |
| Msa1080350 | Msa1356790 | 0.935481 | 7.931186e-97 | -8.615850e-47 |
| Msa1082170 | Msa1356790 | 0.874780 | 5.168848e-68 | -8.615850e-47 |
| Msa1083370 | Msa1356790 | 0.821170 | 4.655909e-53 | -8.615850e-47 |
| Msa1085470 | Msa1356790 | 0.822979 | 1.773117e-53 | -8.615850e-47 |
| Msa1088490 | Msa1356790 | 0.898663 | 4.255720e-77 | -8.615850e-47 |
| Msa1094380 | Msa1356790 | 0.807683 | 4.483199e-50 | -8.615850e-47 |
| Msa1096900 | Msa1356790 | 0.837132 | 6.224802e-57 | -8.615850e-47 |
| Msa1104210 | Msa1356790 | 0.820056 | 8.389206e-53 | -8.615850e-47 |
| Msa0244780 | Msa1356790 | 0.814071 | 1.856903e-51 | -8.615850e-47 |
| Msa0257450 | Msa1356790 | 0.855824 | 4.868622e-62 | -8.615850e-47 |
| Msa0258850 | Msa1356790 | 0.851395 | 9.124397e-61 | -8.615850e-47 |
| Msa0266370 | Msa1356790 | 0.801900 | 7.237086e-49 | -8.615850e-47 |
| Msa0269180 | Msa1356790 | 0.853865 | 1.800953e-61 | -8.615850e-47 |
| Msa0289580 | Msa1356790 | 0.832012 | 1.204691e-55 | -8.615850e-47 |
| Msa0289610 | Msa1356790 | 0.840339 | 9.231128e-58 | -8.615850e-47 |
| Msa0296720 | Msa1356790 | 0.802774 | 4.782479e-49 | -8.615850e-47 |
| Msa0297830 | Msa1356790 | 0.873459 | 1.447105e-67 | -8.615850e-47 |
| Msa0298200 | Msa1356790 | 0.851832 | 6.861859e-61 | -8.615850e-47 |
| Msa0298870 | Msa1356790 | 0.843224 | 1.598027e-58 | -8.615850e-47 |
| Msa0300350 | Msa1356790 | 0.815865 | 7.426595e-52 | -8.615850e-47 |
| Msa0301220 | Msa1356790 | 0.815024 | 1.142815e-51 | -8.615850e-47 |
| Msa0306690 | Msa1356790 | 0.877005 | 8.885416e-69 | -8.615850e-47 |
| Msa0312210 | Msa1356790 | 0.804379 | 2.222592e-49 | -8.615850e-47 |
| Msa0327300 | Msa1356790 | 0.839544 | 1.487238e-57 | -8.615850e-47 |
| Msa0327330 | Msa1356790 | 0.850254 | 1.911951e-60 | -8.615850e-47 |
| Msa0333910 | Msa1356790 | 0.814491 | 1.499739e-51 | -8.615850e-47 |
| Msa0334030 | Msa1356790 | 0.808440 | 3.093456e-50 | -8.615850e-47 |
| Msa0335840 | Msa1356790 | 0.877878 | 4.412661e-69 | -8.615850e-47 |
| Msa0336010 | Msa1356790 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0337670 | Msa1356790 | 0.878877 | 1.967832e-69 | -8.615850e-47 |
| Msa0348830 | Msa1356790 | 0.872778 | 2.447409e-67 | -8.615850e-47 |
| Msa1125500 | Msa1356790 | 0.840375 | 9.028989e-58 | -8.615850e-47 |
| Msa1125580 | Msa1356790 | 0.844028 | 9.743807e-59 | -8.615850e-47 |
| Msa1125860 | Msa1356790 | 0.932769 | 5.175835e-95 | -8.615850e-47 |
| Msa1126060 | Msa1356790 | 0.928152 | 4.324016e-92 | -8.615850e-47 |
| Msa1126470 | Msa1356790 | 0.820417 | 6.935826e-53 | -8.615850e-47 |
| Msa1126520 | Msa1356790 | 0.934560 | 3.343258e-96 | -8.615850e-47 |
| Msa1159090 | Msa1356790 | -0.815015 | 1.147975e-51 | -8.615850e-47 |
| Msa1164150 | Msa1356790 | 0.871144 | 8.549070e-67 | -8.615850e-47 |
| Msa1166570 | Msa1356790 | 0.804346 | 2.257783e-49 | -8.615850e-47 |
| Msa1166860 | Msa1356790 | 0.802311 | 5.959501e-49 | -8.615850e-47 |
| Msa1166870 | Msa1356790 | 0.841747 | 3.940240e-58 | -8.615850e-47 |
| Msa1167540 | Msa1356790 | 0.857592 | 1.469641e-62 | -8.615850e-47 |
| Msa1167550 | Msa1356790 | 0.853924 | 1.731623e-61 | -8.615850e-47 |
| Msa1186030 | Msa1356790 | 0.860248 | 2.357564e-63 | -8.615850e-47 |
| Msa1186980 | Msa1356790 | 0.803041 | 4.211993e-49 | -8.615850e-47 |
| Msa1208020 | Msa1356790 | 0.803308 | 3.708387e-49 | -8.615850e-47 |
| Msa1215820 | Msa1356790 | 0.874587 | 6.012306e-68 | -8.615850e-47 |
| Msa1218170 | Msa1356790 | 0.827748 | 1.318186e-54 | -8.615850e-47 |
| Msa0483110 | Msa1356790 | 0.898551 | 4.750583e-77 | -8.615850e-47 |
| Msa0526540 | Msa1356790 | 0.832167 | 1.103013e-55 | -8.615850e-47 |
| Msa0527150 | Msa1356790 | 0.804710 | 1.895263e-49 | -8.615850e-47 |
| Msa0534750 | Msa1356790 | 0.820738 | 5.853765e-53 | -8.615850e-47 |
| Msa0546030 | Msa1356790 | 0.846890 | 1.634073e-59 | -8.615850e-47 |
| Msa0550420 | Msa1356790 | 0.821667 | 3.574100e-53 | -8.615850e-47 |
| Msa0573350 | Msa1356790 | 0.823299 | 1.492303e-53 | -8.615850e-47 |
| Msa0573500 | Msa1356790 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0576940 | Msa1356790 | 0.840957 | 6.357662e-58 | -8.615850e-47 |
| Msa0582320 | Msa1356790 | 0.801209 | 1.003243e-48 | -8.615850e-47 |
| Msa0584030 | Msa1356790 | 0.855963 | 4.431318e-62 | -8.615850e-47 |
| Msa0588630 | Msa1356790 | -0.838103 | 3.507782e-57 | -8.615850e-47 |
| Msa0590940 | Msa1356790 | 0.823486 | 1.349871e-53 | -8.615850e-47 |
| Msa0596370 | Msa1356790 | 0.822734 | 2.021668e-53 | -8.615850e-47 |
| Msa0844220 | Msa1356790 | -0.815011 | 1.150194e-51 | -8.615850e-47 |
| Msa0861320 | Msa1356790 | 0.804574 | 2.023765e-49 | -8.615850e-47 |
| Msa0876170 | Msa1356790 | 0.861411 | 1.045850e-63 | -8.615850e-47 |
| Msa0888810 | Msa1356790 | 0.869490 | 2.977883e-66 | -8.615850e-47 |
| Msa0915540 | Msa1356790 | 0.852261 | 5.185479e-61 | -8.615850e-47 |
| Msa0945480 | Msa1356790 | 0.913736 | 4.353121e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356790 | MtrunA17_Chr5g0397241 | 100.000 | 180 | 0 | 0 | 31 | 210 | 1 | 180 | 2.16e-130 | 364 |
| Msa1356790 | MtrunA17_Chr8g0387411 | 93.889 | 180 | 8 | 1 | 31 | 210 | 1 | 177 | 1.26e-120 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356790 | AT4G25740.1 | 81.935 | 155 | 23 | 1 | 31 | 185 | 1 | 150 | 2.87e-79 | 235 |
| Msa1356790 | AT5G52650.1 | 80.000 | 155 | 30 | 1 | 31 | 185 | 1 | 154 | 1.02e-72 | 218 |
| Msa1356790 | AT5G41520.1 | 75.974 | 154 | 32 | 5 | 31 | 183 | 1 | 150 | 4.78e-70 | 211 |
| Msa1356790 | AT4G25740.2 | 63.277 | 177 | 32 | 1 | 31 | 207 | 1 | 144 | 4.18e-59 | 182 |
| Msa1356790 | AT5G41520.2 | 75.926 | 108 | 22 | 4 | 76 | 183 | 1 | 104 | 1.14e-42 | 140 |
Find 86 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGATAGTTCTTGATTT+TGG | 0.149376 | tig0015859:-39252 | Msa1356790:three_prime_UTR |
| TGCTTCAGCTCATGCAGTTT+TGG | 0.202034 | tig0015859:-39459 | Msa1356790:three_prime_UTR |
| AGAGGACCTGCTGGTGAATT+TGG | 0.215916 | tig0015859:-41103 | Msa1356790:CDS |
| AGATTTGGCACATCGATTTC+TGG | 0.226768 | tig0015859:+41491 | None:intergenic |
| AGCTTAATCACTTGCAGATT+TGG | 0.235590 | tig0015859:+41476 | None:intergenic |
| TGCAAAGAAGGATTTCAATT+TGG | 0.241273 | tig0015859:-41522 | Msa1356790:CDS |
| TTGCTTGGATGAACTATTAC+TGG | 0.272334 | tig0015859:-41412 | Msa1356790:CDS |
| ACCTAAAATCATTTCTGAAT+TGG | 0.279873 | tig0015859:-39170 | Msa1356790:three_prime_UTR |
| GCTGACTACAGGCCTTCTTT+TGG | 0.293788 | tig0015859:-41058 | Msa1356790:CDS |
| CCTGGCTTCGGTCGTGGTTC+TGG | 0.294525 | tig0015859:-39532 | Msa1356790:CDS |
| TTTGATGGAGAAAGGAGATT+TGG | 0.304890 | tig0015859:-41157 | Msa1356790:CDS |
| GGTCGTGGTTCTGGTGGCTT+TGG | 0.306704 | tig0015859:-39523 | Msa1356790:CDS |
| CTCCTTTCTCCATCAAATCT+TGG | 0.337377 | tig0015859:+41163 | None:intergenic |
| AAGCCAGCTGGAAGGCCCTT+TGG | 0.353720 | tig0015859:-41302 | Msa1356790:CDS |
| TGATGCAGAGCTTCAAATCT+AGG | 0.370024 | tig0015859:-41454 | Msa1356790:CDS |
| TACTGGTTCCTTACCAATGA+TGG | 0.373159 | tig0015859:-41395 | Msa1356790:CDS |
| AGGCCCTTTGGTGGTCCTCC+TGG | 0.384336 | tig0015859:-41290 | Msa1356790:CDS |
| CAGGGCCCTGGTGGTAGACC+TGG | 0.396705 | tig0015859:-39550 | Msa1356790:CDS |
| GATTTGGCACATCGATTTCT+GGG | 0.410537 | tig0015859:+41492 | None:intergenic |
| TAAGCATCGTTTGAACTAGT+TGG | 0.424537 | tig0015859:+39496 | None:intergenic |
| GAGAAACTCAATTCCATCAT+TGG | 0.425707 | tig0015859:+41382 | None:intergenic |
| CTGCCTCTACATTGCAATCA+TGG | 0.430480 | tig0015859:-41790 | Msa1356790:intron |
| CCACCAAAGGGCCTTCCAGC+TGG | 0.433378 | tig0015859:+41299 | None:intergenic |
| ATGATGGAATTGAGTTTCTC+AGG | 0.441503 | tig0015859:-41379 | Msa1356790:CDS |
| AATTCACCAGCAGGTCCTCT+TGG | 0.445100 | tig0015859:+41106 | None:intergenic |
| TCCTGCTACTTTGAAGAAGC+AGG | 0.450643 | tig0015859:-41327 | Msa1356790:CDS |
| GCCTGCTTCTTCAAAGTAGC+AGG | 0.453311 | tig0015859:+41326 | None:intergenic |
| ATTCACCAGCAGGTCCTCTT+GGG | 0.458492 | tig0015859:+41107 | None:intergenic |
| CTGACTCTATTGCAGGGCCC+TGG | 0.459984 | tig0015859:-39562 | Msa1356790:intron |
| AGGGGCCCACCAAGATTTGA+TGG | 0.462295 | tig0015859:-41172 | Msa1356790:CDS |
| GGGAGTTTGCTATGCAAAGA+AGG | 0.473090 | tig0015859:-41534 | Msa1356790:CDS |
| CTTTCTCCATCAAATCTTGG+TGG | 0.474542 | tig0015859:+41166 | None:intergenic |
| AAGAAGCAGGCTAAGCCAGC+TGG | 0.479610 | tig0015859:-41314 | Msa1356790:CDS |
| GGTAGACCTGGCTTCGGTCG+TGG | 0.484946 | tig0015859:-39538 | Msa1356790:CDS |
| GATGGAGAAAGGAGATTTGG+TGG | 0.486392 | tig0015859:-41154 | Msa1356790:CDS |
| GGCTTCGGTCGTGGTTCTGG+TGG | 0.490892 | tig0015859:-39529 | Msa1356790:CDS |
| CAGGTCCTCTTGGGCCTCCA+CGG | 0.492606 | tig0015859:+41116 | None:intergenic |
| GACGATAGATCAAGGACTGT+TGG | 0.492741 | tig0015859:-39289 | Msa1356790:three_prime_UTR |
| CACCAAGATTTGATGGAGAA+AGG | 0.498036 | tig0015859:-41165 | Msa1356790:CDS |
| TTTCTCCATCAAATCTTGGT+GGG | 0.498924 | tig0015859:+41167 | None:intergenic |
| ATCACCAGGAGGACCACCAA+AGG | 0.501155 | tig0015859:+41286 | None:intergenic |
| CCAGCTGGAAGGCCCTTTGG+TGG | 0.502902 | tig0015859:-41299 | Msa1356790:CDS |
| GTGGAGCTCCAGCTGACTAC+AGG | 0.506847 | tig0015859:-41069 | Msa1356790:CDS |
| AAGATTATTACCCCAAAAGA+AGG | 0.511567 | tig0015859:+41046 | None:intergenic |
| CCTGGTGGTAGACCTGGCTT+CGG | 0.513224 | tig0015859:-39544 | Msa1356790:CDS |
| TCTCCTCCAAATTCACCAGC+AGG | 0.516678 | tig0015859:+41097 | None:intergenic |
| AAAGAAGGCCTGTAGTCAGC+TGG | 0.516901 | tig0015859:+41061 | None:intergenic |
| TCAAACAACTTGTAGTGGAG+GGG | 0.518188 | tig0015859:+39411 | None:intergenic |
| GTCCTCCTGGTGATCGCCCT+AGG | 0.527814 | tig0015859:-41277 | Msa1356790:intron |
| GGACCTGCTGGTGAATTTGG+AGG | 0.530997 | tig0015859:-41100 | Msa1356790:CDS |
| CTACAAGTTGTTTGATCCAT+CGG | 0.533537 | tig0015859:-39403 | Msa1356790:three_prime_UTR |
| CCAGAACCACGACCGAAGCC+AGG | 0.533716 | tig0015859:+39532 | None:intergenic |
| CCGAAGCCAGGTCTACCACC+AGG | 0.539431 | tig0015859:+39544 | None:intergenic |
| AATGTTTGGACGATAGATCA+AGG | 0.541184 | tig0015859:-39297 | Msa1356790:three_prime_UTR |
| ACTCAATTCCATCATTGGTA+AGG | 0.545851 | tig0015859:+41387 | None:intergenic |
| GGAGGCCCAAGAGGACCTGC+TGG | 0.551228 | tig0015859:-41112 | Msa1356790:CDS |
| GGTATTTGCAGATCTCTCTA+CGG | 0.553257 | tig0015859:+41655 | None:intergenic |
| TTTAGAAGATTGCAGCGCGA+AGG | 0.554374 | tig0015859:-41856 | Msa1356790:CDS |
| CACAAGACATACCTTGGAAG+AGG | 0.559210 | tig0015859:+41634 | None:intergenic |
| TTAGAAGATTGCAGCGCGAA+GGG | 0.562488 | tig0015859:-41855 | Msa1356790:CDS |
| GTAGCAGGAACAATCTCAGA+TGG | 0.565512 | tig0015859:+41341 | None:intergenic |
| TCACCAGGAGGACCACCAAA+GGG | 0.567521 | tig0015859:+41287 | None:intergenic |
| ACTCTATTGCAGGGCCCTGG+TGG | 0.567801 | tig0015859:-39559 | Msa1356790:intron |
| ATCAAACAACTTGTAGTGGA+GGG | 0.574464 | tig0015859:+39410 | None:intergenic |
| AGCAGGCTAAGCCAGCTGGA+AGG | 0.574627 | tig0015859:-41310 | Msa1356790:CDS |
| TATTAAAATAAAATGTCCGA+TGG | 0.576095 | tig0015859:+39387 | None:intergenic |
| ATGGATCAAACAACTTGTAG+TGG | 0.585969 | tig0015859:+39406 | None:intergenic |
| AATTACCTAGGGCGATCACC+AGG | 0.586300 | tig0015859:+41272 | None:intergenic |
| GGCCTCCACGGTATCCATCA+CGG | 0.588978 | tig0015859:+41128 | None:intergenic |
| ATCTGCAAATACCTCTTCCA+AGG | 0.590451 | tig0015859:-41645 | Msa1356790:intron |
| GATGCAGAGCTTCAAATCTA+GGG | 0.604467 | tig0015859:-41453 | Msa1356790:CDS |
| CAAACAACTTGTAGTGGAGG+GGG | 0.604922 | tig0015859:+39412 | None:intergenic |
| GATCAAACAACTTGTAGTGG+AGG | 0.605834 | tig0015859:+39409 | None:intergenic |
| TCAAATCTAGGGAATATGTG+AGG | 0.607518 | tig0015859:-41442 | Msa1356790:CDS |
| CAAATCTAGGGAATATGTGA+GGG | 0.609242 | tig0015859:-41441 | Msa1356790:CDS |
| ATACCATGATTGCAATGTAG+AGG | 0.611113 | tig0015859:+41787 | None:intergenic |
| GCAGCGCGAAGGGATTAGAA+AGG | 0.617881 | tig0015859:-41845 | Msa1356790:CDS |
| GGATACCGTGGAGGCCCAAG+AGG | 0.629598 | tig0015859:-41121 | Msa1356790:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637340 | tig0015859:-41142 | Msa1356790:CDS |
| GGTGAATTTGGAGGAGACAA+AGG | 0.655884 | tig0015859:-41091 | Msa1356790:CDS |
| GAATTTGGAGGAGACAAAGG+TGG | 0.658883 | tig0015859:-41088 | Msa1356790:CDS |
| CGAAGCCAGGTCTACCACCA+GGG | 0.679017 | tig0015859:+39545 | None:intergenic |
| CAGCACAACAGAAATTTCAG+CGG | 0.693931 | tig0015859:+41810 | None:intergenic |
| GACCGTGATGGATACCGTGG+AGG | 0.697879 | tig0015859:-41130 | Msa1356790:CDS |
| GGTGACCGTGATGGATACCG+TGG | 0.715974 | tig0015859:-41133 | Msa1356790:CDS |
| TACCTAGGGCGATCACCAGG+AGG | 0.726307 | tig0015859:+41275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAATGAATAAAAT+TGG | + | tig0015859:39802-39821 | None:intergenic | 10.0% |
| !!! | TTTTTTTATGTTTTGTTATT+TGG | - | tig0015859:40281-40300 | Msa1356790:intron | 10.0% |
| !! | AAATAAATATAAAAATTGAG+TGG | - | tig0015859:41531-41550 | Msa1356790:CDS | 10.0% |
| !! | AATAAATATAAAAATTGAGT+GGG | - | tig0015859:41532-41551 | Msa1356790:CDS | 10.0% |
| !!! | TTCTAAAATACATATAAACT+TGG | - | tig0015859:40806-40825 | Msa1356790:intron | 15.0% |
| !!! | TCTAAAATACATATAAACTT+GGG | - | tig0015859:40807-40826 | Msa1356790:intron | 15.0% |
| !!! | TTTGTTTTTGCATATTCAAA+AGG | + | tig0015859:39254-39273 | None:intergenic | 20.0% |
| !! | TAACAAAGAGAAAGTAAATT+AGG | - | tig0015859:39625-39644 | Msa1356790:intron | 20.0% |
| !! | AACAAAGAGAAAGTAAATTA+GGG | - | tig0015859:39626-39645 | Msa1356790:intron | 20.0% |
| !! | AATTCCAAATTAATTACCTA+GGG | + | tig0015859:40247-40266 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTGTTATTTGGT+CGG | - | tig0015859:40285-40304 | Msa1356790:intron | 20.0% |
| !! | ACTTATATATATTGAGCAAA+GGG | + | tig0015859:40846-40865 | None:intergenic | 20.0% |
| !! | AACTTATATATATTGAGCAA+AGG | + | tig0015859:40847-40866 | None:intergenic | 20.0% |
| !!! | TTTAACTAGTTTAATAGAGT+TGG | - | tig0015859:41000-41019 | Msa1356790:intron | 20.0% |
| !!! | GATTTAGCTTTTGAAATATA+AGG | - | tig0015859:41619-41638 | Msa1356790:intron | 20.0% |
| !! | TATTAAAATAAAATGTCCGA+TGG | + | tig0015859:42121-42140 | None:intergenic | 20.0% |
| !!! | ATGATGATTTTGTTAATGTT+TGG | - | tig0015859:42194-42213 | Msa1356790:intron | 20.0% |
| !!! | AGAAATGATTTTAGGTTATT+GGG | + | tig0015859:42331-42350 | None:intergenic | 20.0% |
| ! | ATGAAGATCTAACAGAAAAT+TGG | - | tig0015859:39540-39559 | Msa1356790:CDS | 25.0% |
| ! | TGAAGATCTAACAGAAAATT+GGG | - | tig0015859:39541-39560 | Msa1356790:CDS | 25.0% |
| !! | TTTCTCTTTGTTATATACGA+TGG | + | tig0015859:39618-39637 | None:intergenic | 25.0% |
| ! | TTATTGTGTTGTGTTTGAAT+TGG | - | tig0015859:39925-39944 | Msa1356790:intron | 25.0% |
| !!! | AAACTGTTGTTATTTTTCAG+AGG | - | tig0015859:39950-39969 | Msa1356790:intron | 25.0% |
| !!! | AACTGTTGTTATTTTTCAGA+GGG | - | tig0015859:39951-39970 | Msa1356790:intron | 25.0% |
| ! | CAATTCCAAATTAATTACCT+AGG | + | tig0015859:40248-40267 | None:intergenic | 25.0% |
| !!! | TTTTGGGGTAATAATCTTAT+TGG | - | tig0015859:40464-40483 | Msa1356790:intron | 25.0% |
| !!! | ATGTTGTGTTTGTTATGATT+TGG | - | tig0015859:40515-40534 | Msa1356790:intron | 25.0% |
| !!! | TTTTGTTATGGTGTTTTATG+CGG | - | tig0015859:40577-40596 | Msa1356790:intron | 25.0% |
| ! | TCAAATCAAAGATAATACTG+AGG | + | tig0015859:40628-40647 | None:intergenic | 25.0% |
| ! | ATTTGTACAGAAAAAGAAAC+AGG | - | tig0015859:41218-41237 | Msa1356790:intron | 25.0% |
| ! | CTCTAACTTACTTTGAATTA+TGG | - | tig0015859:41790-41809 | Msa1356790:intron | 25.0% |
| ! | CCAATAGAATTATATACATG+AGG | + | tig0015859:41895-41914 | None:intergenic | 25.0% |
| ! | CCTCATGTATATAATTCTAT+TGG | - | tig0015859:41892-41911 | Msa1356790:intron | 25.0% |
| !! | ATGTAATGAGAATTTTGAAC+CGG | - | tig0015859:42152-42171 | Msa1356790:intron | 25.0% |
| !!! | CAATTGATAGTTCTTGATTT+TGG | - | tig0015859:42253-42272 | Msa1356790:intron | 25.0% |
| !!! | CAGAAATGATTTTAGGTTAT+TGG | + | tig0015859:42332-42351 | None:intergenic | 25.0% |
| ! | ACCTAAAATCATTTCTGAAT+TGG | - | tig0015859:42335-42354 | Msa1356790:intron | 25.0% |
| !! | TCCAATTCAGAAATGATTTT+AGG | + | tig0015859:42339-42358 | None:intergenic | 25.0% |
| !!! | GTATTTTTGGCAATTCAGTT+GGG | - | tig0015859:39469-39488 | Msa1356790:three_prime_UTR | 30.0% |
| TAAAATTGGAATCGCGTAAA+TGG | + | tig0015859:39788-39807 | None:intergenic | 30.0% | |
| TATGTCTTGTGCAATAATCT+AGG | - | tig0015859:39883-39902 | Msa1356790:intron | 30.0% | |
| ATGTCTTGTGCAATAATCTA+GGG | - | tig0015859:39884-39903 | Msa1356790:intron | 30.0% | |
| TGCAAAGAAGGATTTCAATT+TGG | - | tig0015859:39983-40002 | Msa1356790:intron | 30.0% | |
| AAGATTATTACCCCAAAAGA+AGG | + | tig0015859:40462-40481 | None:intergenic | 30.0% | |
| !! | TTTGTTATGGTGTTTTATGC+GGG | - | tig0015859:40578-40597 | Msa1356790:intron | 30.0% |
| !! | TGTTTTATGCGGGTTAATTT+TGG | - | tig0015859:40588-40607 | Msa1356790:intron | 30.0% |
| ! | TTTTCATTGTCAAGTAGACT+TGG | - | tig0015859:40696-40715 | Msa1356790:intron | 30.0% |
| TATATGCAAAACAAGTGTAG+TGG | - | tig0015859:40945-40964 | Msa1356790:intron | 30.0% | |
| ! | TTTAATAGAGTTGGTTCCAA+TGG | - | tig0015859:41009-41028 | Msa1356790:intron | 30.0% |
| !! | ATTGTTCTATCCAAGTTGAT+AGG | - | tig0015859:41035-41054 | Msa1356790:intron | 30.0% |
| !! | TTGTTCTATCCAAGTTGATA+GGG | - | tig0015859:41036-41055 | Msa1356790:intron | 30.0% |
| !! | CAAGCATACTCATTTTTATG+TGG | + | tig0015859:41197-41216 | None:intergenic | 30.0% |
| CACATAAAAATGAGTATGCT+TGG | - | tig0015859:41195-41214 | Msa1356790:intron | 30.0% | |
| CACTTTACAGTAAGAAAGAA+TGG | - | tig0015859:41276-41295 | Msa1356790:intron | 30.0% | |
| TTTAGTAGATTATGTCTTGC+TGG | - | tig0015859:41345-41364 | Msa1356790:CDS | 30.0% | |
| ATAGTGTATACCAACTTGTA+GGG | + | tig0015859:41765-41784 | None:intergenic | 30.0% | |
| ATTATATACATGAGGAAAGC+AGG | + | tig0015859:41887-41906 | None:intergenic | 30.0% | |
| CAGAAGAATAAAACTTGATC+AGG | + | tig0015859:41926-41945 | None:intergenic | 30.0% | |
| ! | TGTAATGAGAATTTTGAACC+GGG | - | tig0015859:42153-42172 | Msa1356790:intron | 30.0% |
| !! | AGAGTGTTTTACAAAGCTAA+CGG | - | tig0015859:42303-42322 | Msa1356790:intron | 30.0% |
| !! | CGTGTTGGAATTTGTTAGAA+AGG | + | tig0015859:39220-39239 | None:intergenic | 35.0% |
| AAGGTTTATTGCTTACGTGT+TGG | + | tig0015859:39235-39254 | None:intergenic | 35.0% | |
| !!! | GGTATTTTTGGCAATTCAGT+TGG | - | tig0015859:39468-39487 | Msa1356790:three_prime_UTR | 35.0% |
| TTTCTATTTGGGCTTACTCA+TGG | + | tig0015859:39567-39586 | None:intergenic | 35.0% | |
| ATGAGTAAGCCCAAATAGAA+AGG | - | tig0015859:39566-39585 | Msa1356790:intron | 35.0% | |
| ATACCATGATTGCAATGTAG+AGG | + | tig0015859:39721-39740 | None:intergenic | 35.0% | |
| ! | GCGTAAATGGATTCAAAGAA+TGG | + | tig0015859:39775-39794 | None:intergenic | 35.0% |
| TTATTGCACAAGACATACCT+TGG | + | tig0015859:39880-39899 | None:intergenic | 35.0% | |
| AGCTTAATCACTTGCAGATT+TGG | + | tig0015859:40032-40051 | None:intergenic | 35.0% | |
| TCAAATCTAGGGAATATGTG+AGG | - | tig0015859:40063-40082 | Msa1356790:intron | 35.0% | |
| CAAATCTAGGGAATATGTGA+GGG | - | tig0015859:40064-40083 | Msa1356790:intron | 35.0% | |
| TTGCTTGGATGAACTATTAC+TGG | - | tig0015859:40093-40112 | Msa1356790:intron | 35.0% | |
| ACTCAATTCCATCATTGGTA+AGG | + | tig0015859:40121-40140 | None:intergenic | 35.0% | |
| GAGAAACTCAATTCCATCAT+TGG | + | tig0015859:40126-40145 | None:intergenic | 35.0% | |
| ! | ATGATGGAATTGAGTTTCTC+AGG | - | tig0015859:40126-40145 | Msa1356790:intron | 35.0% |
| ATCGCCCTAGGTAATTAATT+TGG | - | tig0015859:40240-40259 | Msa1356790:intron | 35.0% | |
| TATTTGGTCGGTTGATTGAA+TGG | - | tig0015859:40297-40316 | Msa1356790:intron | 35.0% | |
| !!! | TGAATGGAATGTGTTTTGAC+AGG | - | tig0015859:40313-40332 | Msa1356790:intron | 35.0% |
| !!! | GAATGGAATGTGTTTTGACA+GGG | - | tig0015859:40314-40333 | Msa1356790:intron | 35.0% |
| !!! | AATGGAATGTGTTTTGACAG+GGG | - | tig0015859:40315-40334 | Msa1356790:intron | 35.0% |
| TTTCTCCATCAAATCTTGGT+GGG | + | tig0015859:40341-40360 | None:intergenic | 35.0% | |
| TTTGATGGAGAAAGGAGATT+TGG | - | tig0015859:40348-40367 | Msa1356790:intron | 35.0% | |
| GATACGATGATGATTCTGTT+CGG | - | tig0015859:40550-40569 | Msa1356790:intron | 35.0% | |
| ! | CTGTTCGGTTCATTTTGTTA+TGG | - | tig0015859:40565-40584 | Msa1356790:intron | 35.0% |
| GCAATATACACAAGACACAA+GGG | + | tig0015859:40667-40686 | None:intergenic | 35.0% | |
| AGCAATATACACAAGACACA+AGG | + | tig0015859:40668-40687 | None:intergenic | 35.0% | |
| TGGATAGAACAATGAACCAT+TGG | + | tig0015859:41028-41047 | None:intergenic | 35.0% | |
| !! | ATGTTTTTGTGGGCAGAATT+GGG | + | tig0015859:41119-41138 | None:intergenic | 35.0% |
| !! | AATGTTTTTGTGGGCAGAAT+TGG | + | tig0015859:41120-41139 | None:intergenic | 35.0% |
| ATTCTGCCCACAAAAACATT+CGG | - | tig0015859:41120-41139 | Msa1356790:CDS | 35.0% | |
| !! | CCAAAACCGAATGTTTTTGT+GGG | + | tig0015859:41129-41148 | None:intergenic | 35.0% |
| !! | TCCAAAACCGAATGTTTTTG+TGG | + | tig0015859:41130-41149 | None:intergenic | 35.0% |
| !! | ACAAAAACATTCGGTTTTGG+AGG | - | tig0015859:41129-41148 | Msa1356790:CDS | 35.0% |
| !!! | CAAAAACATTCGGTTTTGGA+GGG | - | tig0015859:41130-41149 | Msa1356790:CDS | 35.0% |
| GAGATGAGAGTAAGAAAGAA+TGG | - | tig0015859:41298-41317 | Msa1356790:CDS | 35.0% | |
| ATAAATACCCAGATTGAGAG+AGG | - | tig0015859:41398-41417 | Msa1356790:CDS | 35.0% | |
| TCTCTTGGATAAAGTAGCAA+AGG | - | tig0015859:41459-41478 | Msa1356790:CDS | 35.0% | |
| TCAAAAGCTAAATCCAGTTG+TGG | + | tig0015859:41613-41632 | None:intergenic | 35.0% | |
| AAGGAAATCGAGTCAATATG+AGG | + | tig0015859:41658-41677 | None:intergenic | 35.0% | |
| CATAGTGTATACCAACTTGT+AGG | + | tig0015859:41766-41785 | None:intergenic | 35.0% | |
| TATTCTTCTGACTCTATTGC+AGG | - | tig0015859:41936-41955 | Msa1356790:intron | 35.0% | |
| ATTCTTCTGACTCTATTGCA+GGG | - | tig0015859:41937-41956 | Msa1356790:intron | 35.0% | |
| ! | TAAGCATCGTTTGAACTAGT+TGG | + | tig0015859:42012-42031 | None:intergenic | 35.0% |
| ! | ATCAAACAACTTGTAGTGGA+GGG | + | tig0015859:42098-42117 | None:intergenic | 35.0% |
| ATGGATCAAACAACTTGTAG+TGG | + | tig0015859:42102-42121 | None:intergenic | 35.0% | |
| CTACAAGTTGTTTGATCCAT+CGG | - | tig0015859:42102-42121 | Msa1356790:intron | 35.0% | |
| TCTACTAAAGCAAAAACACC+CGG | + | tig0015859:42174-42193 | None:intergenic | 35.0% | |
| AATGTTTGGACGATAGATCA+AGG | - | tig0015859:42208-42227 | Msa1356790:intron | 35.0% | |
| TTGCGTTACTTAACTAACGC+AGG | - | tig0015859:39445-39464 | Msa1356790:three_prime_UTR | 40.0% | |
| TGCGTTACTTAACTAACGCA+GGG | - | tig0015859:39446-39465 | Msa1356790:three_prime_UTR | 40.0% | |
| !!! | AACTAACGCAGGGGTATTTT+TGG | - | tig0015859:39456-39475 | Msa1356790:three_prime_UTR | 40.0% |
| CAGCACAACAGAAATTTCAG+CGG | + | tig0015859:39698-39717 | None:intergenic | 40.0% | |
| GGTATTTGCAGATCTCTCTA+CGG | + | tig0015859:39853-39872 | None:intergenic | 40.0% | |
| ATCTGCAAATACCTCTTCCA+AGG | - | tig0015859:39860-39879 | Msa1356790:intron | 40.0% | |
| !! | GATTTGGCACATCGATTTCT+GGG | + | tig0015859:40016-40035 | None:intergenic | 40.0% |
| !! | AGATTTGGCACATCGATTTC+TGG | + | tig0015859:40017-40036 | None:intergenic | 40.0% |
| TGATGCAGAGCTTCAAATCT+AGG | - | tig0015859:40051-40070 | Msa1356790:intron | 40.0% | |
| GATGCAGAGCTTCAAATCTA+GGG | - | tig0015859:40052-40071 | Msa1356790:intron | 40.0% | |
| ! | ATGTGAGGGAAACTTTTGCT+TGG | - | tig0015859:40078-40097 | Msa1356790:intron | 40.0% |
| !! | TACTGGTTCCTTACCAATGA+TGG | - | tig0015859:40110-40129 | Msa1356790:intron | 40.0% |
| CTTTCTCCATCAAATCTTGG+TGG | + | tig0015859:40342-40361 | None:intergenic | 40.0% | |
| CACCAAGATTTGATGGAGAA+AGG | - | tig0015859:40340-40359 | Msa1356790:intron | 40.0% | |
| CTCCTTTCTCCATCAAATCT+TGG | + | tig0015859:40345-40364 | None:intergenic | 40.0% | |
| ! | TTGATTTGATCTCCACAGTG+TGG | - | tig0015859:40639-40658 | Msa1356790:intron | 40.0% |
| ! | CCCACAAAAACATTCGGTTT+TGG | - | tig0015859:41126-41145 | Msa1356790:CDS | 40.0% |
| GTCAAATGCTTCTTCTCTCT+TGG | - | tig0015859:41444-41463 | Msa1356790:CDS | 40.0% | |
| AAATTGAGTGGGACATTGCT+TGG | - | tig0015859:41543-41562 | Msa1356790:intron | 40.0% | |
| GACATTGCTTGGATAGACAA+AGG | - | tig0015859:41554-41573 | Msa1356790:intron | 40.0% | |
| TCAATATGAGGTGATTCGAG+GGG | + | tig0015859:41646-41665 | None:intergenic | 40.0% | |
| GTCAATATGAGGTGATTCGA+GGG | + | tig0015859:41647-41666 | None:intergenic | 40.0% | |
| AGTCAATATGAGGTGATTCG+AGG | + | tig0015859:41648-41667 | None:intergenic | 40.0% | |
| ! | TCAAACAACTTGTAGTGGAG+GGG | + | tig0015859:42097-42116 | None:intergenic | 40.0% |
| GATCAAACAACTTGTAGTGG+AGG | + | tig0015859:42099-42118 | None:intergenic | 40.0% | |
| GTGCACATGCTGTGTTGAAT+TGG | - | tig0015859:39154-39173 | Msa1356790:three_prime_UTR | 45.0% | |
| GCATTAACACATGCGTGAGT+TGG | + | tig0015859:39342-39361 | None:intergenic | 45.0% | |
| CCTGCATTAGTTAACTCACG+CGG | - | tig0015859:39393-39412 | Msa1356790:three_prime_UTR | 45.0% | |
| GCGTTACTTAACTAACGCAG+GGG | - | tig0015859:39447-39466 | Msa1356790:three_prime_UTR | 45.0% | |
| TAAGCCCAAATAGAAAGGCC+CGG | - | tig0015859:39571-39590 | Msa1356790:intron | 45.0% | |
| TTGCCAATAGTTATGCGAGC+CGG | + | tig0015859:39593-39612 | None:intergenic | 45.0% | |
| TTTAGAAGATTGCAGCGCGA+AGG | - | tig0015859:39649-39668 | Msa1356790:intron | 45.0% | |
| TTAGAAGATTGCAGCGCGAA+GGG | - | tig0015859:39650-39669 | Msa1356790:intron | 45.0% | |
| CTGCCTCTACATTGCAATCA+TGG | - | tig0015859:39715-39734 | Msa1356790:intron | 45.0% | |
| CACAAGACATACCTTGGAAG+AGG | + | tig0015859:39874-39893 | None:intergenic | 45.0% | |
| !! | GGGAGTTTGCTATGCAAAGA+AGG | - | tig0015859:39971-39990 | Msa1356790:intron | 45.0% |
| GTAGCAGGAACAATCTCAGA+TGG | + | tig0015859:40167-40186 | None:intergenic | 45.0% | |
| !! | TCCTGCTACTTTGAAGAAGC+AGG | - | tig0015859:40178-40197 | Msa1356790:intron | 45.0% |
| GATGGAGAAAGGAGATTTGG+TGG | - | tig0015859:40351-40370 | Msa1356790:intron | 45.0% | |
| GGTGAATTTGGAGGAGACAA+AGG | - | tig0015859:40414-40433 | Msa1356790:intron | 45.0% | |
| GAATTTGGAGGAGACAAAGG+TGG | - | tig0015859:40417-40436 | Msa1356790:intron | 45.0% | |
| ! | CTGACTACAGGCCTTCTTTT+GGG | - | tig0015859:40448-40467 | Msa1356790:intron | 45.0% |
| ! | TGACTACAGGCCTTCTTTTG+GGG | - | tig0015859:40449-40468 | Msa1356790:intron | 45.0% |
| !! | AAGTTGATAGGGTTGAGCGT+CGG | - | tig0015859:41047-41066 | Msa1356790:intron | 45.0% |
| TCATCCATCATGGCAAGTTC+AGG | + | tig0015859:41084-41103 | None:intergenic | 45.0% | |
| ! | GTGATCGGTTTCATCCATCA+TGG | + | tig0015859:41094-41113 | None:intergenic | 45.0% |
| ! | TTTTTGTGGGCAGAATTGGG+CGG | + | tig0015859:41116-41135 | None:intergenic | 45.0% |
| AATACCCAGATTGAGAGAGG+AGG | - | tig0015859:41401-41420 | Msa1356790:CDS | 45.0% | |
| ! | AGAGAGGAGGCACAAAACAT+TGG | - | tig0015859:41414-41433 | Msa1356790:CDS | 45.0% |
| CAATATGAGGTGATTCGAGG+GGG | + | tig0015859:41645-41664 | None:intergenic | 45.0% | |
| !! | GGGTAATGGGTGAAACACAA+AGG | + | tig0015859:41677-41696 | None:intergenic | 45.0% |
| ! | ACAACAACTGGTTGCTGTTC+AGG | + | tig0015859:41719-41738 | None:intergenic | 45.0% |
| ! | ACCAGTTGTTGTTCGTGTCA+CGG | - | tig0015859:41727-41746 | Msa1356790:intron | 45.0% |
| ! | TGCTTCAGCTCATGCAGTTT+TGG | - | tig0015859:42046-42065 | Msa1356790:intron | 45.0% |
| ! | CAAACAACTTGTAGTGGAGG+GGG | + | tig0015859:42096-42115 | None:intergenic | 45.0% |
| GACGATAGATCAAGGACTGT+TGG | - | tig0015859:42216-42235 | Msa1356790:intron | 45.0% | |
| !! | ATACTTTAATAATATTAAAA+TGG | + | tig0015859:41492-41511 | None:intergenic | 5.0% |
| CTGCATGAGTTAACTCACGC+AGG | + | tig0015859:39278-39297 | None:intergenic | 50.0% | |
| CTGCGTGAGTTAACTCATGC+AGG | - | tig0015859:39276-39295 | Msa1356790:three_prime_UTR | 50.0% | |
| CCGCGTGAGTTAACTAATGC+AGG | + | tig0015859:39396-39415 | None:intergenic | 50.0% | |
| TGGGCGCGAGCAAAATTTGT+TGG | - | tig0015859:39488-39507 | Msa1356790:exon | 50.0% | |
| ! | GGGCGCGAGCAAAATTTGTT+GGG | - | tig0015859:39489-39508 | Msa1356790:exon | 50.0% |
| TGCCAATAGTTATGCGAGCC+GGG | + | tig0015859:39592-39611 | None:intergenic | 50.0% | |
| GCCTGCTTCTTCAAAGTAGC+AGG | + | tig0015859:40182-40201 | None:intergenic | 50.0% | |
| AATTACCTAGGGCGATCACC+AGG | + | tig0015859:40236-40255 | None:intergenic | 50.0% | |
| !! | AGATTTGGTGGTGACCGTGA+TGG | - | tig0015859:40363-40382 | Msa1356790:intron | 50.0% |
| ATTCACCAGCAGGTCCTCTT+GGG | + | tig0015859:40401-40420 | None:intergenic | 50.0% | |
| AATTCACCAGCAGGTCCTCT+TGG | + | tig0015859:40402-40421 | None:intergenic | 50.0% | |
| AGAGGACCTGCTGGTGAATT+TGG | - | tig0015859:40402-40421 | Msa1356790:intron | 50.0% | |
| TCTCCTCCAAATTCACCAGC+AGG | + | tig0015859:40411-40430 | None:intergenic | 50.0% | |
| AAAGAAGGCCTGTAGTCAGC+TGG | + | tig0015859:40447-40466 | None:intergenic | 50.0% | |
| ! | GCTGACTACAGGCCTTCTTT+TGG | - | tig0015859:40447-40466 | Msa1356790:intron | 50.0% |
| GACGCTCAACCCTATCAACT+TGG | + | tig0015859:41048-41067 | None:intergenic | 50.0% | |
| !!! | CATTCGGTTTTGGAGGGTCT+CGG | - | tig0015859:41136-41155 | Msa1356790:CDS | 50.0% |
| TGTGCCTCCTCTCTCAATCT+GGG | + | tig0015859:41408-41427 | None:intergenic | 50.0% | |
| TTGTGCCTCCTCTCTCAATC+TGG | + | tig0015859:41409-41428 | None:intergenic | 50.0% | |
| GGTCGGATTTCACGGGTAAT+GGG | + | tig0015859:41690-41709 | None:intergenic | 50.0% | |
| ! | TGGTTGCTGTTCAGGTGATC+GGG | + | tig0015859:41711-41730 | None:intergenic | 50.0% |
| ! | CTGGTTGCTGTTCAGGTGAT+CGG | + | tig0015859:41712-41731 | None:intergenic | 50.0% |
| ! | CCAGTTGTTGTTCGTGTCAC+GGG | - | tig0015859:41728-41747 | Msa1356790:intron | 50.0% |
| CTGCGTGAGTTAACGCACAC+AGG | + | tig0015859:39310-39329 | None:intergenic | 55.0% | |
| CTGCGTGAGTTAACTCACGC+AGG | + | tig0015859:39362-39381 | None:intergenic | 55.0% | |
| CGAGCCGGGCCTTTCTATTT+GGG | + | tig0015859:39578-39597 | None:intergenic | 55.0% | |
| GCAGCGCGAAGGGATTAGAA+AGG | - | tig0015859:39660-39679 | Msa1356790:intron | 55.0% | |
| AAGAAGCAGGCTAAGCCAGC+TGG | - | tig0015859:40191-40210 | Msa1356790:intron | 55.0% | |
| TCACCAGGAGGACCACCAAA+GGG | + | tig0015859:40221-40240 | None:intergenic | 55.0% | |
| ATCACCAGGAGGACCACCAA+AGG | + | tig0015859:40222-40241 | None:intergenic | 55.0% | |
| AGGGGCCCACCAAGATTTGA+TGG | - | tig0015859:40333-40352 | Msa1356790:intron | 55.0% | |
| GGACCTGCTGGTGAATTTGG+AGG | - | tig0015859:40405-40424 | Msa1356790:intron | 55.0% | |
| GACACAAGGGAACCACACTG+TGG | + | tig0015859:40654-40673 | None:intergenic | 55.0% | |
| !! | TGATAGGGTTGAGCGTCGGA+TGG | - | tig0015859:41051-41070 | Msa1356790:intron | 55.0% |
| !! | GATAGGGTTGAGCGTCGGAT+GGG | - | tig0015859:41052-41071 | Msa1356790:intron | 55.0% |
| !!! | GTTTTGGAGGGTCTCGGCTA+GGG | - | tig0015859:41142-41161 | Msa1356790:CDS | 55.0% |
| GGGTCGGATTTCACGGGTAA+TGG | + | tig0015859:41691-41710 | None:intergenic | 55.0% | |
| GTGATCGGGTCGGATTTCAC+GGG | + | tig0015859:41697-41716 | None:intergenic | 55.0% | |
| GGTGATCGGGTCGGATTTCA+CGG | + | tig0015859:41698-41717 | None:intergenic | 55.0% | |
| TGCTGTTCAGGTGATCGGGT+CGG | + | tig0015859:41707-41726 | None:intergenic | 55.0% | |
| CCCGTGACACGAACAACAAC+TGG | + | tig0015859:41731-41750 | None:intergenic | 55.0% | |
| ! | TCGTGTCACGGGTTGTTGCT+CGG | - | tig0015859:41739-41758 | Msa1356790:intron | 55.0% |
| TGTTGCTCGGCCCTACAAGT+TGG | - | tig0015859:41752-41771 | Msa1356790:intron | 55.0% | |
| GCGAGCCGGGCCTTTCTATT+TGG | + | tig0015859:39579-39598 | None:intergenic | 60.0% | |
| ! | GGCCCGGCTCGCATAACTAT+TGG | - | tig0015859:39587-39606 | Msa1356790:intron | 60.0% |
| AGCAGGCTAAGCCAGCTGGA+AGG | - | tig0015859:40195-40214 | Msa1356790:intron | 60.0% | |
| AAGCCAGCTGGAAGGCCCTT+TGG | - | tig0015859:40203-40222 | Msa1356790:intron | 60.0% | |
| TACCTAGGGCGATCACCAGG+AGG | + | tig0015859:40233-40252 | None:intergenic | 60.0% | |
| !! | GGTGACCGTGATGGATACCG+TGG | - | tig0015859:40372-40391 | Msa1356790:intron | 60.0% |
| !! | GACCGTGATGGATACCGTGG+AGG | - | tig0015859:40375-40394 | Msa1356790:intron | 60.0% |
| GGCCTCCACGGTATCCATCA+CGG | + | tig0015859:40380-40399 | None:intergenic | 60.0% | |
| GTGGAGCTCCAGCTGACTAC+AGG | - | tig0015859:40436-40455 | Msa1356790:intron | 60.0% | |
| !! | GGTTGAGCGTCGGATGGGTT+CGG | - | tig0015859:41057-41076 | Msa1356790:CDS | 60.0% |
| !! | GTTGAGCGTCGGATGGGTTC+GGG | - | tig0015859:41058-41077 | Msa1356790:CDS | 60.0% |
| CGGGCCTGAACTTGCCATGA+TGG | - | tig0015859:41077-41096 | Msa1356790:CDS | 60.0% | |
| GGGCAGAATTGGGCGGTGAT+CGG | + | tig0015859:41109-41128 | None:intergenic | 60.0% | |
| !!! | GGTTTTGGAGGGTCTCGGCT+AGG | - | tig0015859:41141-41160 | Msa1356790:CDS | 60.0% |
| GCAGCATGTCACGCCACAAC+TGG | - | tig0015859:41597-41616 | Msa1356790:intron | 60.0% | |
| CTGACTCTATTGCAGGGCCC+TGG | - | tig0015859:41943-41962 | Msa1356790:intron | 60.0% | |
| ACTCTATTGCAGGGCCCTGG+TGG | - | tig0015859:41946-41965 | Msa1356790:intron | 60.0% | |
| CGAAGCCAGGTCTACCACCA+GGG | + | tig0015859:41963-41982 | None:intergenic | 60.0% | |
| CCTGGTGGTAGACCTGGCTT+CGG | - | tig0015859:41961-41980 | Msa1356790:intron | 60.0% | |
| !! | GGTCGTGGTTCTGGTGGCTT+TGG | - | tig0015859:41982-42001 | Msa1356790:intron | 60.0% |
| CCACCAAAGGGCCTTCCAGC+TGG | + | tig0015859:40209-40228 | None:intergenic | 65.0% | |
| CCAGCTGGAAGGCCCTTTGG+TGG | - | tig0015859:40206-40225 | Msa1356790:intron | 65.0% | |
| ! | AGGCCCTTTGGTGGTCCTCC+TGG | - | tig0015859:40215-40234 | Msa1356790:intron | 65.0% |
| GTCCTCCTGGTGATCGCCCT+AGG | - | tig0015859:40228-40247 | Msa1356790:intron | 65.0% | |
| GGATACCGTGGAGGCCCAAG+AGG | - | tig0015859:40384-40403 | Msa1356790:intron | 65.0% | |
| CAGGTCCTCTTGGGCCTCCA+CGG | + | tig0015859:40392-40411 | None:intergenic | 65.0% | |
| CCGAAGCCAGGTCTACCACC+AGG | + | tig0015859:41964-41983 | None:intergenic | 65.0% | |
| GGTAGACCTGGCTTCGGTCG+TGG | - | tig0015859:41967-41986 | Msa1356790:intron | 65.0% | |
| CCAGAACCACGACCGAAGCC+AGG | + | tig0015859:41976-41995 | None:intergenic | 65.0% | |
| CCTGGCTTCGGTCGTGGTTC+TGG | - | tig0015859:41973-41992 | Msa1356790:intron | 65.0% | |
| !! | GGCTTCGGTCGTGGTTCTGG+TGG | - | tig0015859:41976-41995 | Msa1356790:intron | 65.0% |
| GGAGGCCCAAGAGGACCTGC+TGG | - | tig0015859:40393-40412 | Msa1356790:intron | 70.0% | |
| TGGAGGGTCTCGGCTAGGGC+TGG | - | tig0015859:41146-41165 | Msa1356790:CDS | 70.0% | |
| GGAGGGTCTCGGCTAGGGCT+GGG | - | tig0015859:41147-41166 | Msa1356790:CDS | 70.0% | |
| ! | TAGGGCTGGGCGGGTGGGTT+GGG | - | tig0015859:41160-41179 | Msa1356790:CDS | 70.0% |
| CAGGGCCCTGGTGGTAGACC+TGG | - | tig0015859:41955-41974 | Msa1356790:intron | 70.0% | |
| GGGTCTCGGCTAGGGCTGGG+CGG | - | tig0015859:41150-41169 | Msa1356790:CDS | 75.0% | |
| GGTCTCGGCTAGGGCTGGGC+GGG | - | tig0015859:41151-41170 | Msa1356790:CDS | 75.0% | |
| TCGGCTAGGGCTGGGCGGGT+GGG | - | tig0015859:41155-41174 | Msa1356790:CDS | 75.0% | |
| CTAGGGCTGGGCGGGTGGGT+TGG | - | tig0015859:41159-41178 | Msa1356790:CDS | 75.0% | |
| ! | CTCGGCTAGGGCTGGGCGGG+TGG | - | tig0015859:41154-41173 | Msa1356790:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015859 | gene | 39142 | 42385 | 39142 | ID=Msa1356790;Name=Msa1356790 |
| tig0015859 | mRNA | 39142 | 42385 | 39142 | ID=Msa1356790-mRNA-1;Parent=Msa1356790;Name=Msa1356790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.8|0.66|0.83|0.8|0.66|6|353|210 |
| tig0015859 | exon | 39142 | 39569 | 39142 | ID=Msa1356790-mRNA-1:exon:10126;Parent=Msa1356790-mRNA-1 |
| tig0015859 | exon | 41057 | 41192 | 41057 | ID=Msa1356790-mRNA-1:exon:10125;Parent=Msa1356790-mRNA-1 |
| tig0015859 | exon | 41278 | 41557 | 41278 | ID=Msa1356790-mRNA-1:exon:10124;Parent=Msa1356790-mRNA-1 |
| tig0015859 | exon | 41646 | 41694 | 41646 | ID=Msa1356790-mRNA-1:exon:10123;Parent=Msa1356790-mRNA-1 |
| tig0015859 | exon | 41791 | 41880 | 41791 | ID=Msa1356790-mRNA-1:exon:10122;Parent=Msa1356790-mRNA-1 |
| tig0015859 | exon | 42383 | 42385 | 42383 | ID=Msa1356790-mRNA-1:exon:10121;Parent=Msa1356790-mRNA-1 |
| tig0015859 | CDS | 42383 | 42385 | 42383 | ID=Msa1356790-mRNA-1:cds;Parent=Msa1356790-mRNA-1 |
| tig0015859 | CDS | 41791 | 41880 | 41791 | ID=Msa1356790-mRNA-1:cds;Parent=Msa1356790-mRNA-1 |
| tig0015859 | CDS | 41646 | 41694 | 41646 | ID=Msa1356790-mRNA-1:cds;Parent=Msa1356790-mRNA-1 |
| tig0015859 | CDS | 41278 | 41557 | 41278 | ID=Msa1356790-mRNA-1:cds;Parent=Msa1356790-mRNA-1 |
| tig0015859 | CDS | 41057 | 41192 | 41057 | ID=Msa1356790-mRNA-1:cds;Parent=Msa1356790-mRNA-1 |
| tig0015859 | CDS | 39495 | 39569 | 39495 | ID=Msa1356790-mRNA-1:cds;Parent=Msa1356790-mRNA-1 |
| tig0015859 | three_prime_UTR | 39142 | 39494 | 39142 | ID=Msa1356790-mRNA-1:three_prime_utr;Parent=Msa1356790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
