AlfalfaGEDB | Msa0039560

M. sativa cultivar zhongmu-4 / Msa0039560

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009420	Msa0039560	0.802154	6.417340e-49	-8.615850e-47
Msa0039560	Msa0251320	0.800688	1.281912e-48	-8.615850e-47
Msa0039560	Msa0434000	0.808198	3.483542e-50	-8.615850e-47
Msa0039560	Msa0454530	0.807743	4.355529e-50	-8.615850e-47
Msa0039560	Msa0493000	0.808651	2.789791e-50	-8.615850e-47
Msa0039560	Msa0681270	0.801957	7.046234e-49	-8.615850e-47
Msa0039560	Msa0888130	0.809757	1.615956e-50	-8.615850e-47
Msa0039560	Msa0925290	0.808793	2.600538e-50	-8.615850e-47
Msa0039560	Msa0927380	0.808885	2.485530e-50	-8.615850e-47
Msa0039560	Msa0967280	0.809268	2.057983e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 138 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTACAAACTTGTAAATG+AGG	0.482795	1_1:-69277325	None:intergenic
AACAATAGAGTTCGATTGAA+GGG	0.545990	1_1:-69273857	None:intergenic
AACTGAATTGGAGATCAAAC+CGG	0.480975	1_1:-69276821	None:intergenic
AAGACATTGTTTGGCTGATG+AGG	0.574437	1_1:-69275360	None:intergenic
AAGGGTTGAAGTGTTTAATG+AGG	0.535613	1_1:-69273839	None:intergenic
AAGTACAAACTTGTAAATGA+GGG	0.602507	1_1:-69277324	None:intergenic
AATAAACAAAGTTTGATTCA+TGG	0.317212	1_1:-69277011	None:intergenic
AATAATAATATGAAACACGT+GGG	0.657083	1_1:-69276294	None:intergenic
AATCGATGCAGTCATATGTT+AGG	0.429732	1_1:+69275328	Msa0039560:three_prime_UTR
AATGAGTGCAGGTAATTTCT+AGG	0.243822	1_1:-69276342	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTATTACGATTAAGTTCCT+AGG	-	chr1_1:69272383-69272402	None:intergenic	30.0%
AAAGAGATAGAAAGAAAACG+TGG	-	chr1_1:69272501-69272520	None:intergenic	30.0%
GAGAAAAAAACAGAGATGAT+GGG	-	chr1_1:69273032-69273051	None:intergenic	30.0%
AGAGAAAAAAACAGAGATGA+TGG	-	chr1_1:69273033-69273052	None:intergenic	30.0%
AGTGACCTCAAGATTAAATT+TGG	-	chr1_1:69273174-69273193	None:intergenic	30.0%
ACTAGTGCAAAATTGACATA+AGG	+	chr1_1:69273191-69273210	Msa0039560:intron	30.0%
AACAATAGAGTTCGATTGAA+GGG	-	chr1_1:69273860-69273879	None:intergenic	30.0%
CCTCTGATCAATTAATCTTA+GGG	-	chr1_1:69274052-69274071	None:intergenic	30.0%
TCCTCTGATCAATTAATCTT+AGG	-	chr1_1:69274053-69274072	None:intergenic	30.0%
ACCTAATCCAGTTTAAACTA+GGG	-	chr1_1:69274279-69274298	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	69272372	69277993	69272372	ID=Msa0039560;Name=Msa0039560
chr1_1	mRNA	69272372	69277993	69272372	ID=Msa0039560-mRNA-1;Parent=Msa0039560;Name=Msa0039560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.8\|0.66\|0.83\|0.2\|0.16\|6\|2380\|103
chr1_1	exon	69272372	69272374	69272372	ID=Msa0039560-mRNA-1:exon:22650;Parent=Msa0039560-mRNA-1
chr1_1	exon	69273735	69273986	69273735	ID=Msa0039560-mRNA-1:exon:22651;Parent=Msa0039560-mRNA-1
chr1_1	exon	69275198	69275403	69275198	ID=Msa0039560-mRNA-1:exon:22652;Parent=Msa0039560-mRNA-1
chr1_1	exon	69275568	69275987	69275568	ID=Msa0039560-mRNA-1:exon:22653;Parent=Msa0039560-mRNA-1
chr1_1	exon	69276091	69277481	69276091	ID=Msa0039560-mRNA-1:exon:22654;Parent=Msa0039560-mRNA-1
chr1_1	exon	69277574	69277993	69277574	ID=Msa0039560-mRNA-1:exon:22655;Parent=Msa0039560-mRNA-1
chr1_1	CDS	69272372	69272374	69272372	ID=Msa0039560-mRNA-1:cds;Parent=Msa0039560-mRNA-1
chr1_1	CDS	69273735	69273986	69273735	ID=Msa0039560-mRNA-1:cds;Parent=Msa0039560-mRNA-1
chr1_1	CDS	69275198	69275254	69275198	ID=Msa0039560-mRNA-1:cds;Parent=Msa0039560-mRNA-1
chr1_1	three_prime_UTR	69275255	69275403	69275255	ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
chr1_1	three_prime_UTR	69275568	69275987	69275568	ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
chr1_1	three_prime_UTR	69276091	69277481	69276091	ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
chr1_1	three_prime_UTR	69277574	69277993	69277574	ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1

Gene Sequence	>Msa0039560 TTGGCTATAGCCATAGAACTCTCTCTTGTTCCTCTCTCCCATGCCATCAAGCTCTTCAGTCGAATTCTCTCCTTCCTCAATCGAATCCTTCAATCGAATCTCTACTTCCTCATTAAACACTTCAACCCTTCAATCGAACTCTATTGTTCCTCAATCATACTATTCTGCATCTTCAGTCTTGCAATTGTTCTCCAGTTTTGCTATCAAACTCTTCTGTCCCTAACGTTTTCAGATCCTCAATCGATTAGAGTGAAGGGTTCTTGTAGTGATCGAGGGTACTTCTCCATTCTTCAGGGTTCTTCATCGGTTTGA
Protein sequence	>Msa0039560 LAIAIELSLVPLSHAIKLFSRILSFLNRILQSNLYFLIKHFNPSIELYCSSIILFCIFSLAIVLQFCYQTLLSLTFSDPQSIRVKGSCSDRGYFSILQGSSSV*