AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 138 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCTATTGTACAATAAAA+AGG 0.183289 1_1:+69276501 Msa0039560:three_prime_UTR
TTATCATGTGATTTCCATTT+AGG 0.189106 1_1:+69277142 Msa0039560:three_prime_UTR
CACGTGTTTCATATTATTAT+TGG 0.193573 1_1:+69276296 Msa0039560:three_prime_UTR
TTTATAAACATTGACGAATA+AGG 0.232408 1_1:+69276184 Msa0039560:three_prime_UTR
AGGGTACTTCTCCATTCTTC+AGG 0.242308 1_1:+69275215 Msa0039560:CDS
AATGAGTGCAGGTAATTTCT+AGG 0.243822 1_1:-69276342 None:intergenic
ATGCAAAGAGGAATGATATT+TGG 0.249231 1_1:-69276567 None:intergenic
TTTGGCTGATGAGGTGGTTT+TGG 0.290752 1_1:-69275351 None:intergenic
ATATACATTTCCACTTGTTT+AGG 0.295092 1_1:-69277099 None:intergenic
GACAAGCTTCAAGTATGAAT+TGG 0.306622 1_1:+69277608 Msa0039560:three_prime_UTR
ATGAAACTACCATACCTAAA+TGG 0.309878 1_1:-69277156 None:intergenic
CAACTTCTTTCACTGGATAA+TGG 0.312110 1_1:+69275966 Msa0039560:three_prime_UTR
TATTGTAATATTGTCTTCAA+TGG 0.316211 1_1:+69277902 Msa0039560:three_prime_UTR
AATAAACAAAGTTTGATTCA+TGG 0.317212 1_1:-69277011 None:intergenic
ATAAATAACTTATACATTAT+AGG 0.328655 1_1:+69275855 Msa0039560:three_prime_UTR
GAAGAGTTTGATAGCAAAAC+TGG 0.335188 1_1:-69273923 None:intergenic
CACATATTGAAGACATTGTT+TGG 0.343518 1_1:-69275369 None:intergenic
ATAAGTTAATGAGGGTGTTA+TGG 0.365690 1_1:+69277837 Msa0039560:three_prime_UTR
AGTTTGATTCATGGTTTCTC+TGG 0.368810 1_1:-69277002 None:intergenic
ATTATTATTACATTATTAGT+AGG 0.372089 1_1:+69275831 Msa0039560:three_prime_UTR
TTTACATCAAGTTTGCTTGT+TGG 0.374728 1_1:-69275673 None:intergenic
AGCTACCTTGTAAGAAATCT+TGG 0.375182 1_1:+69275936 Msa0039560:three_prime_UTR
TATAGGTCTATGATTTCCTT+TGG 0.378642 1_1:+69275800 Msa0039560:three_prime_UTR
TAGACCTATATTCAACTCAT+TGG 0.385965 1_1:-69275787 None:intergenic
TCACTAAAGTTGTTTACAAT+TGG 0.393668 1_1:+69276540 Msa0039560:three_prime_UTR
GGAGCTAGAGAGGTGTAATC+AGG 0.396676 1_1:+69277660 Msa0039560:three_prime_UTR
GGAACTTGTGGACTTGGTGT+TGG 0.407482 1_1:+69277792 Msa0039560:three_prime_UTR
ATAGTGTTACTAGTTATGTA+TGG 0.410332 1_1:+69277767 Msa0039560:three_prime_UTR
CATTCTTCAGGGTTCTTCAT+CGG 0.411242 1_1:+69275227 Msa0039560:CDS
ATCATAAACCATGCTCCGTC+TGG 0.411412 1_1:-69276927 None:intergenic
TAATTATTTATGTATGCATA+AGG 0.411645 1_1:+69276266 Msa0039560:three_prime_UTR
TGGAGGAGTTGTTATGCTAT+AGG 0.413045 1_1:+69277812 Msa0039560:three_prime_UTR
TGGTTTATGATCTGAAACTT+AGG 0.422904 1_1:+69276939 Msa0039560:three_prime_UTR
TGATTGTGGGATGTGAAGCA+TGG 0.423347 1_1:+69277708 Msa0039560:three_prime_UTR
GCAGATGAATGGAGAAATTG+AGG 0.424668 1_1:-69275300 None:intergenic
ATTTCTAGGAACCACTGAAA+TGG 0.424986 1_1:-69276328 None:intergenic
AGGAACAAGAGAGAGTTCTA+TGG 0.429473 1_1:-69273742 None:intergenic
AATCGATGCAGTCATATGTT+AGG 0.429732 1_1:+69275328 Msa0039560:three_prime_UTR
GGAAGTAGAGATTCGATTGA+AGG 0.433594 1_1:-69273818 None:intergenic
GGGTACTTCTCCATTCTTCA+GGG 0.435343 1_1:+69275216 Msa0039560:CDS
ATTGAGGATCTGAAAACGTT+AGG 0.439668 1_1:-69273950 None:intergenic
ATTGTAATATTGTCTTCAAT+GGG 0.440498 1_1:+69277903 Msa0039560:three_prime_UTR
TCAAGTATGAATTGGGTCAT+TGG 0.444068 1_1:+69277616 Msa0039560:three_prime_UTR
TGGTCGAGACCTCTAGCATT+AGG 0.445417 1_1:+69277639 Msa0039560:three_prime_UTR
TAAATTAATTTAATGAGTGC+AGG 0.449763 1_1:-69276353 None:intergenic
GGTTTGTGAATTGAAAATAA+AGG 0.450348 1_1:+69275593 Msa0039560:three_prime_UTR
ACGTAATCAACTTCTTTCAC+TGG 0.451909 1_1:+69275959 Msa0039560:three_prime_UTR
AATTCGACTGAAGAGCTTGA+TGG 0.452396 1_1:-69273775 None:intergenic
CAGTGTAACCGCAATTGAAC+TGG 0.462315 1_1:+69276781 Msa0039560:three_prime_UTR
ATAAATAGATGTTATAAAGA+TGG 0.467963 1_1:-69277228 None:intergenic
CATTTCCACTTGTTTAGGTA+AGG 0.469907 1_1:-69277094 None:intergenic
TCATATTATTATTGGAATGT+GGG 0.475023 1_1:+69276304 Msa0039560:three_prime_UTR
ATTGGAAACTTTGTTAATGA+AGG 0.475279 1_1:+69276607 Msa0039560:three_prime_UTR
ACAAGCTTCAAGTATGAATT+GGG 0.475297 1_1:+69277609 Msa0039560:three_prime_UTR
GGTTGAACCACATGTCTATC+CGG 0.476114 1_1:+69276802 Msa0039560:three_prime_UTR
AACTGAATTGGAGATCAAAC+CGG 0.480975 1_1:-69276821 None:intergenic
GATTGTGGGATGTGAAGCAT+GGG 0.481024 1_1:+69277709 Msa0039560:three_prime_UTR
TCACCCAATGAGTTGAATAT+AGG 0.481853 1_1:+69275783 Msa0039560:three_prime_UTR
AAAGTACAAACTTGTAAATG+AGG 0.482795 1_1:-69277325 None:intergenic
TTCATATTATTATTGGAATG+TGG 0.483244 1_1:+69276303 Msa0039560:three_prime_UTR
TATCAGATGCTTCATCTGTC+GGG 0.483542 1_1:-69277063 None:intergenic
AGACCTATATTCAACTCATT+GGG 0.484718 1_1:-69275786 None:intergenic
TTCACAAACCCTTTCAGACT+CGG 0.485354 1_1:-69275580 None:intergenic
CGATGAAGAACCCTGAAGAA+TGG 0.487265 1_1:-69275226 None:intergenic
TTTACAAGTTTGCTATGTGC+TGG 0.502886 1_1:+69277273 Msa0039560:three_prime_UTR
ATTTGTGAGCCACTGTAAGA+TGG 0.505124 1_1:+69276227 Msa0039560:three_prime_UTR
TCGATTAAGAAGCAGATGAA+TGG 0.506262 1_1:-69275311 None:intergenic
GACTGAAGAGCTTGATGGCA+TGG 0.507475 1_1:-69273770 None:intergenic
CAGTTCAATTGCGGTTACAC+TGG 0.509090 1_1:-69276780 None:intergenic
TCAGGAGGCTACGGAATGGA+GGG 0.509921 1_1:+69277678 Msa0039560:three_prime_UTR
GTATCAGATGCTTCATCTGT+CGG 0.511756 1_1:-69277064 None:intergenic
ATGGGAGGAACTTGTGGACT+TGG 0.514508 1_1:+69277786 Msa0039560:three_prime_UTR
TTGAGGATCTGAAAACGTTA+GGG 0.515457 1_1:-69273949 None:intergenic
TTATGTATGGGAGGAACTTG+TGG 0.518527 1_1:+69277780 Msa0039560:three_prime_UTR
CTATAGGTTATAAGTTAATG+AGG 0.520534 1_1:+69277828 Msa0039560:three_prime_UTR
TCGATTGAAGGATTCGATTG+AGG 0.520804 1_1:-69273806 None:intergenic
GGGTCAGTTTCATAAGTTTG+AGG 0.521155 1_1:+69277460 Msa0039560:three_prime_UTR
TTCTTACATGTTTATCTCAA+CGG 0.523073 1_1:+69276970 Msa0039560:three_prime_UTR
CAAACAATGTCTTCAATATG+TGG 0.523685 1_1:+69275370 Msa0039560:three_prime_UTR
TACGTCCAAGATTTCTTACA+AGG 0.526348 1_1:-69275941 None:intergenic
GAGAAAGAACCGAGTCTGAA+AGG 0.528071 1_1:+69275571 Msa0039560:three_prime_UTR
ACTGAAGAGCTTGATGGCAT+GGG 0.533855 1_1:-69273769 None:intergenic
ATGAGCAGAGAGACTACATA+AGG 0.534165 1_1:+69276100 Msa0039560:three_prime_UTR
AAGGGTTGAAGTGTTTAATG+AGG 0.535613 1_1:-69273839 None:intergenic
GAACAATAGAGTTCGATTGA+AGG 0.536904 1_1:-69273858 None:intergenic
GATGCAGAATAGTATGATTG+AGG 0.538473 1_1:-69273880 None:intergenic
ATGTGATTTCCATTTAGGTA+TGG 0.539724 1_1:+69277147 Msa0039560:three_prime_UTR
ACCTTCACTCTAATCGATTG+AGG 0.541602 1_1:-69273966 None:intergenic
AGAAAGAACCGAGTCTGAAA+GGG 0.542168 1_1:+69275572 Msa0039560:three_prime_UTR
CAGGGTTCTTGTAGTGATCG+AGG 0.542717 1_1:+69275195 Msa0039560:intron
TAGAAAGTCCAGACGGAGCA+TGG 0.543928 1_1:+69276919 Msa0039560:three_prime_UTR
ACTTGTGGACTTGGTGTTGG+AGG 0.545750 1_1:+69277795 Msa0039560:three_prime_UTR
AACAATAGAGTTCGATTGAA+GGG 0.545990 1_1:-69273857 None:intergenic
AGGGTTCTTGTAGTGATCGA+GGG 0.546782 1_1:+69275196 Msa0039560:intron
GGAATGTGGGTCCATTTCAG+TGG 0.547364 1_1:+69276317 Msa0039560:three_prime_UTR
TAGTGTTACTAGTTATGTAT+GGG 0.550797 1_1:+69277768 Msa0039560:three_prime_UTR
AGTATGAATTGGGTCATTGG+TGG 0.552294 1_1:+69277619 Msa0039560:three_prime_UTR
TGGGTAAAAGCAAGAAGTGT+TGG 0.553297 1_1:+69277741 Msa0039560:three_prime_UTR
TCTAGCATTAGGAGCTAGAG+AGG 0.554054 1_1:+69277650 Msa0039560:three_prime_UTR
TGAAGCATGGGGTTGTGTCG+TGG 0.554651 1_1:+69277721 Msa0039560:three_prime_UTR
TCAATATGTGGTCTCACTGA+AGG 0.554662 1_1:+69275382 Msa0039560:three_prime_UTR
AGCTTGATGGCATGGGAGAG+AGG 0.556158 1_1:-69273762 None:intergenic
GATGAAGCATCTGATACATA+CGG 0.556320 1_1:+69277070 Msa0039560:three_prime_UTR
ATCAGGAGGCTACGGAATGG+AGG 0.557115 1_1:+69277677 Msa0039560:three_prime_UTR
TCCTCAATCGATTAGAGTGA+AGG 0.561232 1_1:+69273965 Msa0039560:CDS
GTAATAAAAGTAATCAATGT+GGG 0.563159 1_1:+69276637 Msa0039560:three_prime_UTR
TTGAAGGATTCGATTGAGGA+AGG 0.564085 1_1:-69273802 None:intergenic
GTGATGTTGTTGTAGGCTTG+AGG 0.573352 1_1:+69276076 Msa0039560:intron
AAGACATTGTTTGGCTGATG+AGG 0.574437 1_1:-69275360 None:intergenic
CAATAATAATATGAAACACG+TGG 0.580012 1_1:-69276295 None:intergenic
GAGGTGTAATCAGGAGGCTA+CGG 0.582800 1_1:+69277669 Msa0039560:three_prime_UTR
CAGATGAATGGAGAAATTGA+GGG 0.585976 1_1:-69275299 None:intergenic
GGAATCATAACAAAGAGCAA+TGG 0.593487 1_1:-69277303 None:intergenic
CATTATTAATTGAAACGAGT+AGG 0.595273 1_1:+69276890 Msa0039560:three_prime_UTR
ACGGGCCTTACCTAAACAAG+TGG 0.595406 1_1:+69277089 Msa0039560:three_prime_UTR
TGGTTCAACCAGTTCAATTG+CGG 0.597322 1_1:-69276789 None:intergenic
GCCACTGTAAGATGGTTACT+AGG 0.598794 1_1:+69276235 Msa0039560:three_prime_UTR
AAGTACAAACTTGTAAATGA+GGG 0.602507 1_1:-69277324 None:intergenic
ACATTGTTTGGCTGATGAGG+TGG 0.603625 1_1:-69275357 None:intergenic
CTTGATGTAAATCTCATGAG+TGG 0.606455 1_1:+69275685 Msa0039560:three_prime_UTR
TACATGTTTATCTCAACGGT+AGG 0.608244 1_1:+69276974 Msa0039560:three_prime_UTR
TATAGGTTATAAGTTAATGA+GGG 0.610477 1_1:+69277829 Msa0039560:three_prime_UTR
GAAGCATGGGGTTGTGTCGT+GGG 0.611130 1_1:+69277722 Msa0039560:three_prime_UTR
AGTAATAAAAGTAATCAATG+TGG 0.611764 1_1:+69276636 Msa0039560:three_prime_UTR
GTAATCAGGAGGCTACGGAA+TGG 0.616303 1_1:+69277674 Msa0039560:three_prime_UTR
ATGAAGCATCTGATACATAC+GGG 0.619263 1_1:+69277071 Msa0039560:three_prime_UTR
TCTCTAGCTCCTAATGCTAG+AGG 0.619286 1_1:-69277648 None:intergenic
ATTGTGGGATGTGAAGCATG+GGG 0.638273 1_1:+69277710 Msa0039560:three_prime_UTR
GAGGCTACGGAATGGAGGGG+AGG 0.644438 1_1:+69277682 Msa0039560:three_prime_UTR
TGTTACTAGTTATGTATGGG+AGG 0.644786 1_1:+69277771 Msa0039560:three_prime_UTR
ATAATAATGAAACAAACCAA+AGG 0.651156 1_1:-69275816 None:intergenic
GCTAGAGAGGTGTAATCAGG+AGG 0.654754 1_1:+69277663 Msa0039560:three_prime_UTR
AATAATAATATGAAACACGT+GGG 0.657083 1_1:-69276294 None:intergenic
GAAAATGTAGAAAGTCCAGA+CGG 0.687422 1_1:+69276912 Msa0039560:three_prime_UTR
CAGGAGGCTACGGAATGGAG+GGG 0.698645 1_1:+69277679 Msa0039560:three_prime_UTR
ACTGTAAGATGGTTACTAGG+AGG 0.700572 1_1:+69276238 Msa0039560:three_prime_UTR
TCCTAGTAACCATCTTACAG+TGG 0.701076 1_1:-69276236 None:intergenic
GATCAAACCGGATAGACATG+TGG 0.705943 1_1:-69276809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTTTAAAAAAAATATATT+CGG - chr1_1:69272412-69272431 None:intergenic 10.0%
!!! ATATTGATAATTTTAGTTTA+AGG + chr1_1:69273283-69273302 Msa0039560:intron 10.0%
!!! TATTGATAATTTTAGTTTAA+GGG + chr1_1:69273284-69273303 Msa0039560:intron 10.0%
!!! ATTATATCATTATACTTTTA+TGG + chr1_1:69275105-69275124 Msa0039560:intron 10.0%
!!! AATAAATGTGAATATATTTT+AGG - chr1_1:69275270-69275289 None:intergenic 10.0%
!! ATTATTATTACATTATTAGT+AGG + chr1_1:69275831-69275850 Msa0039560:three_prime_UTR 10.0%
!! ATAAATAACTTATACATTAT+AGG + chr1_1:69275855-69275874 Msa0039560:three_prime_UTR 10.0%
!!! TCCGAATATATTTTTTTTAA+AGG + chr1_1:69272408-69272427 Msa0039560:intron 15.0%
!!! TTTTGTTTATTGACATAATT+TGG + chr1_1:69272442-69272461 Msa0039560:intron 15.0%
!!! AAACCTATTTTATTAAAAAG+AGG + chr1_1:69273226-69273245 Msa0039560:intron 15.0%
!! AAATATGAAAAAAAATAAGG+TGG + chr1_1:69273346-69273365 Msa0039560:intron 15.0%
!! TCTCTGATATTAATTTAAAT+GGG - chr1_1:69273455-69273474 None:intergenic 15.0%
!! TAACAAGTTAAGTAAAAAAT+GGG - chr1_1:69274876-69274895 None:intergenic 15.0%
!!! ACAAGAAGATATTTATTTTA+TGG - chr1_1:69275057-69275076 None:intergenic 15.0%
!! CAAACAAACTTATATTTATT+TGG - chr1_1:69276030-69276049 None:intergenic 15.0%
!! TAATTATTTATGTATGCATA+AGG + chr1_1:69276266-69276285 Msa0039560:three_prime_UTR 15.0%
!!! TTTTTTGTTTTAGATTTGAT+TGG + chr1_1:69276589-69276608 Msa0039560:three_prime_UTR 15.0%
!!! TTTTAAACATTGTTTTTAGT+TGG + chr1_1:69276844-69276863 Msa0039560:three_prime_UTR 15.0%
!! ATAAATAGATGTTATAAAGA+TGG - chr1_1:69277231-69277250 None:intergenic 15.0%
!! CATGTAAAATATAAAAGTTG+AGG + chr1_1:69272887-69272906 Msa0039560:intron 20.0%
!!! AAGTATCATTGTTTTGTTTT+TGG + chr1_1:69273057-69273076 Msa0039560:intron 20.0%
!!! ACACCTCTTTTTAATAAAAT+AGG - chr1_1:69273232-69273251 None:intergenic 20.0%
!!! TTCTTAAAATCAGGTTTTAA+AGG - chr1_1:69273314-69273333 None:intergenic 20.0%
!!! ACCTGATTTTAAGAATAAAT+TGG + chr1_1:69273319-69273338 Msa0039560:intron 20.0%
!! ACCAATTTATTCTTAAAATC+AGG - chr1_1:69273323-69273342 None:intergenic 20.0%
!!! AAACCTGATTTTAAGAAAAA+GGG + chr1_1:69273390-69273409 Msa0039560:intron 20.0%
!! CTCTCTGATATTAATTTAAA+TGG - chr1_1:69273456-69273475 None:intergenic 20.0%
!! GAAAAAAAATCAAATCTGTT+GGG - chr1_1:69273542-69273561 None:intergenic 20.0%
!! AGAAAAAAAATCAAATCTGT+TGG - chr1_1:69273543-69273562 None:intergenic 20.0%
!! TATAGTTTGAGAGTAAATAA+AGG - chr1_1:69273599-69273618 None:intergenic 20.0%
!!! GTTTACTAGTTTATGATTAT+CGG + chr1_1:69274217-69274236 Msa0039560:intron 20.0%
!!! TTTTCTGTGTATTTGATTAT+CGG + chr1_1:69274320-69274339 Msa0039560:intron 20.0%
!! ATAATCTATAGAAAGCTAAA+GGG - chr1_1:69274553-69274572 None:intergenic 20.0%
!! TTTAGATATTTATGATTGAG+TGG + chr1_1:69274595-69274614 Msa0039560:intron 20.0%
!!! ATATATATTGCTATGGTTTT+TGG + chr1_1:69274775-69274794 Msa0039560:intron 20.0%
!! CTAACAAGTTAAGTAAAAAA+TGG - chr1_1:69274877-69274896 None:intergenic 20.0%
!!! CATTTTTTACTTAACTTGTT+AGG + chr1_1:69274875-69274894 Msa0039560:intron 20.0%
!!! AAAGTAATTGTTGTGTTATT+TGG + chr1_1:69275464-69275483 Msa0039560:intron 20.0%
!! ATAATAATGAAACAAACCAA+AGG - chr1_1:69275819-69275838 None:intergenic 20.0%
!!! TTTGCTATTATAAACATGAT+AGG + chr1_1:69276046-69276065 Msa0039560:intron 20.0%
!! TTTATAAACATTGACGAATA+AGG + chr1_1:69276184-69276203 Msa0039560:three_prime_UTR 20.0%
!! AATAATAATATGAAACACGT+GGG - chr1_1:69276297-69276316 None:intergenic 20.0%
!! TTCATATTATTATTGGAATG+TGG + chr1_1:69276303-69276322 Msa0039560:three_prime_UTR 20.0%
!! TCATATTATTATTGGAATGT+GGG + chr1_1:69276304-69276323 Msa0039560:three_prime_UTR 20.0%
!! TAAATTAATTTAATGAGTGC+AGG - chr1_1:69276356-69276375 None:intergenic 20.0%
!! ATAGCTATTGTACAATAAAA+AGG + chr1_1:69276501-69276520 Msa0039560:three_prime_UTR 20.0%
!! TAGCTATTGTACAATAAAAA+GGG + chr1_1:69276502-69276521 Msa0039560:three_prime_UTR 20.0%
!! AGTAATAAAAGTAATCAATG+TGG + chr1_1:69276636-69276655 Msa0039560:three_prime_UTR 20.0%
!! GTAATAAAAGTAATCAATGT+GGG + chr1_1:69276637-69276656 Msa0039560:three_prime_UTR 20.0%
!! CAATGTTTAAAAAACTGAAT+TGG - chr1_1:69276836-69276855 None:intergenic 20.0%
!! AATAAACAAAGTTTGATTCA+TGG - chr1_1:69277014-69277033 None:intergenic 20.0%
!! AACACATAACAACATAAATA+AGG - chr1_1:69277527-69277546 None:intergenic 20.0%
!! TATAGGTTATAAGTTAATGA+GGG + chr1_1:69277829-69277848 Msa0039560:three_prime_UTR 20.0%
!! TATTGTAATATTGTCTTCAA+TGG + chr1_1:69277902-69277921 Msa0039560:three_prime_UTR 20.0%
!! ATTGTAATATTGTCTTCAAT+GGG + chr1_1:69277903-69277922 Msa0039560:three_prime_UTR 20.0%
!! CAAAAAAAAAATGTCTTGAA+TGG + chr1_1:69277932-69277951 Msa0039560:three_prime_UTR 20.0%
!! GCTATCAAATATTTTCTCAT+CGG + chr1_1:69273079-69273098 Msa0039560:intron 25.0%
!! AAGAATATTGCACTTTTCTA+AGG - chr1_1:69273114-69273133 None:intergenic 25.0%
! ACTTTCCAAATTTAATCTTG+AGG + chr1_1:69273166-69273185 Msa0039560:intron 25.0%
!!! CAAACCTGATTTTAAGAAAA+AGG + chr1_1:69273389-69273408 Msa0039560:intron 25.0%
!!! TTTTTTTTAAGGGACATAGT+GGG - chr1_1:69273681-69273700 None:intergenic 25.0%
!!! GGCGATAATGTTTTTTTTAA+GGG - chr1_1:69273691-69273710 None:intergenic 25.0%
!!! AGGCGATAATGTTTTTTTTA+AGG - chr1_1:69273692-69273711 None:intergenic 25.0%
!!! GTGAAGTTTTTTATCACTAA+TGG + chr1_1:69274160-69274179 Msa0039560:intron 25.0%
!!! AATGGATGACATTTTTTTGT+TGG + chr1_1:69274178-69274197 Msa0039560:intron 25.0%
!!! ATGGATGACATTTTTTTGTT+GGG + chr1_1:69274179-69274198 Msa0039560:intron 25.0%
! TCAAATACACAGAAAAACTA+GGG - chr1_1:69274316-69274335 None:intergenic 25.0%
! ATCAAATACACAGAAAAACT+AGG - chr1_1:69274317-69274336 None:intergenic 25.0%
!! TTCATTTACACCTATTGTTT+TGG + chr1_1:69274461-69274480 Msa0039560:intron 25.0%
!! TTTTTGTTCACCAAAACAAT+AGG - chr1_1:69274474-69274493 None:intergenic 25.0%
! CATAATCTATAGAAAGCTAA+AGG - chr1_1:69274554-69274573 None:intergenic 25.0%
!! TTAGCTTTCTATAGATTATG+AGG + chr1_1:69274554-69274573 Msa0039560:intron 25.0%
! TCTATAGATTATGAGGATTA+AGG + chr1_1:69274561-69274580 Msa0039560:intron 25.0%
! ACCATAGCAATATATATTGA+CGG - chr1_1:69274772-69274791 None:intergenic 25.0%
!!! TTTTTACTTAACTTGTTAGG+CGG + chr1_1:69274878-69274897 Msa0039560:intron 25.0%
!!! TTTTTTGTTCATTGAGATTG+TGG + chr1_1:69274958-69274977 Msa0039560:intron 25.0%
!! TTTTTGTTCATTGAGATTGT+GGG + chr1_1:69274959-69274978 Msa0039560:intron 25.0%
! AAAGCCTTTGGTTATTTATT+AGG + chr1_1:69275157-69275176 Msa0039560:intron 25.0%
! AGTTCCTAATAAATAACCAA+AGG - chr1_1:69275164-69275183 None:intergenic 25.0%
!!! TAGGAACTATCTTTATTTTC+AGG + chr1_1:69275176-69275195 Msa0039560:intron 25.0%
!!! AGGAACTATCTTTATTTTCA+GGG + chr1_1:69275177-69275196 Msa0039560:intron 25.0%
!!! TGGTTTTGAGAAAGTTTTAA+TGG + chr1_1:69275484-69275503 Msa0039560:intron 25.0%
! ATTCAAATCAAGTCAAATAG+TGG - chr1_1:69275529-69275548 None:intergenic 25.0%
!!! ACTATTTGACTTGATTTGAA+TGG + chr1_1:69275528-69275547 Msa0039560:intron 25.0%
! GGTTTGTGAATTGAAAATAA+AGG + chr1_1:69275593-69275612 Msa0039560:three_prime_UTR 25.0%
! AAAATTTGTGATGTTGTTGT+AGG + chr1_1:69276069-69276088 Msa0039560:intron 25.0%
! CAATAATAATATGAAACACG+TGG - chr1_1:69276298-69276317 None:intergenic 25.0%
! CACGTGTTTCATATTATTAT+TGG + chr1_1:69276296-69276315 Msa0039560:three_prime_UTR 25.0%
!!! GTCACAAAAGTGTTTAAAAA+TGG - chr1_1:69276446-69276465 None:intergenic 25.0%
! TCACTAAAGTTGTTTACAAT+TGG + chr1_1:69276540-69276559 Msa0039560:three_prime_UTR 25.0%
! CTAAAACAAAAAATGCAAAG+AGG - chr1_1:69276582-69276601 None:intergenic 25.0%
! ATTGGAAACTTTGTTAATGA+AGG + chr1_1:69276607-69276626 Msa0039560:three_prime_UTR 25.0%
! CATTATTAATTGAAACGAGT+AGG + chr1_1:69276890-69276909 Msa0039560:three_prime_UTR 25.0%
! TTCTTACATGTTTATCTCAA+CGG + chr1_1:69276970-69276989 Msa0039560:three_prime_UTR 25.0%
! ATATACATTTCCACTTGTTT+AGG - chr1_1:69277102-69277121 None:intergenic 25.0%
! TTATCATGTGATTTCCATTT+AGG + chr1_1:69277142-69277161 Msa0039560:three_prime_UTR 25.0%
! AAGTACAAACTTGTAAATGA+GGG - chr1_1:69277327-69277346 None:intergenic 25.0%
! AAAGTACAAACTTGTAAATG+AGG - chr1_1:69277328-69277347 None:intergenic 25.0%
!!! TTACAAGTTTGTACTTTTTG+TGG + chr1_1:69277331-69277350 Msa0039560:three_prime_UTR 25.0%
!! TGTTTTCAGTTTGATTACAT+TGG + chr1_1:69277565-69277584 Msa0039560:intron 25.0%
!! ATAGTGTTACTAGTTATGTA+TGG + chr1_1:69277767-69277786 Msa0039560:three_prime_UTR 25.0%
!! TAGTGTTACTAGTTATGTAT+GGG + chr1_1:69277768-69277787 Msa0039560:three_prime_UTR 25.0%
! CTATAGGTTATAAGTTAATG+AGG + chr1_1:69277828-69277847 Msa0039560:three_prime_UTR 25.0%
TGTATTACGATTAAGTTCCT+AGG - chr1_1:69272383-69272402 None:intergenic 30.0%
! AAAGAAAACGTGGTGTTAAA+CGG - chr1_1:69272491-69272510 None:intergenic 30.0%
AAAGAGATAGAAAGAAAACG+TGG - chr1_1:69272501-69272520 None:intergenic 30.0%
GAGAAAAAAACAGAGATGAT+GGG - chr1_1:69273032-69273051 None:intergenic 30.0%
AGAGAAAAAAACAGAGATGA+TGG - chr1_1:69273033-69273052 None:intergenic 30.0%
AGTGACCTCAAGATTAAATT+TGG - chr1_1:69273174-69273193 None:intergenic 30.0%
ACTAGTGCAAAATTGACATA+AGG + chr1_1:69273191-69273210 Msa0039560:intron 30.0%
! ACACCCTTTTTCTTAAAATC+AGG - chr1_1:69273396-69273415 None:intergenic 30.0%
! AAAGGAGTTTTTGTTAGAGT+GGG - chr1_1:69273581-69273600 None:intergenic 30.0%
! TAAAGGAGTTTTTGTTAGAG+TGG - chr1_1:69273582-69273601 None:intergenic 30.0%
!!! TTTTTTTAAGGGACATAGTG+GGG - chr1_1:69273680-69273699 None:intergenic 30.0%
!!! GTTTTTTTTAAGGGACATAG+TGG - chr1_1:69273682-69273701 None:intergenic 30.0%
AACAATAGAGTTCGATTGAA+GGG - chr1_1:69273860-69273879 None:intergenic 30.0%
CCTCTGATCAATTAATCTTA+GGG - chr1_1:69274052-69274071 None:intergenic 30.0%
TCCTCTGATCAATTAATCTT+AGG - chr1_1:69274053-69274072 None:intergenic 30.0%
! TACTAGTTTATGATTATCGG+TGG + chr1_1:69274220-69274239 Msa0039560:intron 30.0%
! ACTAGTTTATGATTATCGGT+GGG + chr1_1:69274221-69274240 Msa0039560:intron 30.0%
ACCTAATCCAGTTTAAACTA+GGG - chr1_1:69274279-69274298 None:intergenic 30.0%
TACCTAATCCAGTTTAAACT+AGG - chr1_1:69274280-69274299 None:intergenic 30.0%
ATTTGAGAAGTTATGTGTCT+AGG + chr1_1:69274493-69274512 Msa0039560:intron 30.0%
TTATGAGGATTAAGGAGAAT+AGG + chr1_1:69274569-69274588 Msa0039560:intron 30.0%
TTTATGATTGAGTGGAATGT+TGG + chr1_1:69274603-69274622 Msa0039560:intron 30.0%
TCCGTCAATATATATTGCTA+TGG + chr1_1:69274768-69274787 Msa0039560:intron 30.0%
!!! AGTTCTGTAGCATTTTTTCA+TGG + chr1_1:69274811-69274830 Msa0039560:intron 30.0%
TTGTAGTTGATTAAAGCCTT+TGG + chr1_1:69275145-69275164 Msa0039560:intron 30.0%
CACATATTGAAGACATTGTT+TGG - chr1_1:69275372-69275391 None:intergenic 30.0%
CAAACAATGTCTTCAATATG+TGG + chr1_1:69275370-69275389 Msa0039560:three_prime_UTR 30.0%
TCAAGTCAAATAGTGGTATA+TGG - chr1_1:69275522-69275541 None:intergenic 30.0%
! TTTACATCAAGTTTGCTTGT+TGG - chr1_1:69275676-69275695 None:intergenic 30.0%
AGACCTATATTCAACTCATT+GGG - chr1_1:69275789-69275808 None:intergenic 30.0%
TAGACCTATATTCAACTCAT+TGG - chr1_1:69275790-69275809 None:intergenic 30.0%
TATAGGTCTATGATTTCCTT+TGG + chr1_1:69275800-69275819 Msa0039560:three_prime_UTR 30.0%
CTATTGTACAATAAAAAGGG+AGG + chr1_1:69276505-69276524 Msa0039560:three_prime_UTR 30.0%
ATGCAAAGAGGAATGATATT+TGG - chr1_1:69276570-69276589 None:intergenic 30.0%
! TGGTTTATGATCTGAAACTT+AGG + chr1_1:69276939-69276958 Msa0039560:three_prime_UTR 30.0%
ATGTGATTTCCATTTAGGTA+TGG + chr1_1:69277147-69277166 Msa0039560:three_prime_UTR 30.0%
ATGAAACTACCATACCTAAA+TGG - chr1_1:69277159-69277178 None:intergenic 30.0%
!!! GTAACAGTCTTTTTTCTTCA+AGG - chr1_1:69277392-69277411 None:intergenic 30.0%
! AAAGTTTCACACTTTTGTCA+TGG + chr1_1:69277439-69277458 Msa0039560:three_prime_UTR 30.0%
! AAGTTTCACACTTTTGTCAT+GGG + chr1_1:69277440-69277459 Msa0039560:three_prime_UTR 30.0%
TATTGATGCAAATAAAGCTC+CGG - chr1_1:69277499-69277518 None:intergenic 30.0%
ACAAGCTTCAAGTATGAATT+GGG + chr1_1:69277609-69277628 Msa0039560:three_prime_UTR 30.0%
!! ATAAGTTAATGAGGGTGTTA+TGG + chr1_1:69277837-69277856 Msa0039560:three_prime_UTR 30.0%
! GACTCAATGTCTTATGGTTT+TGG + chr1_1:69272627-69272646 Msa0039560:intron 35.0%
AACAAGGAGTCTTACATTTG+AGG + chr1_1:69272805-69272824 Msa0039560:intron 35.0%
CAACGAGAATGAGTATCAAT+GGG - chr1_1:69273009-69273028 None:intergenic 35.0%
! CAAATATTTTCTCATCGGTG+TGG + chr1_1:69273084-69273103 Msa0039560:intron 35.0%
! AGAGGTGTGAAATACAATTG+AGG + chr1_1:69273244-69273263 Msa0039560:intron 35.0%
! CAAACTTGAGACCTTTAAAG+AGG + chr1_1:69273479-69273498 Msa0039560:intron 35.0%
ATTGGAGTGTACCTCTTTAA+AGG - chr1_1:69273493-69273512 None:intergenic 35.0%
!! AATCTGTTGGGTTGATATGA+CGG - chr1_1:69273530-69273549 None:intergenic 35.0%
! GTTTTTGTTAGAGTGGGATT+GGG - chr1_1:69273575-69273594 None:intergenic 35.0%
! AGTTTTTGTTAGAGTGGGAT+TGG - chr1_1:69273576-69273595 None:intergenic 35.0%
GAGATCAATTGAAGCTTTCT+AGG - chr1_1:69273712-69273731 None:intergenic 35.0%
! AAGGGTTGAAGTGTTTAATG+AGG - chr1_1:69273842-69273861 None:intergenic 35.0%
GAACAATAGAGTTCGATTGA+AGG - chr1_1:69273861-69273880 None:intergenic 35.0%
GATGCAGAATAGTATGATTG+AGG - chr1_1:69273883-69273902 None:intergenic 35.0%
! GAAGAGTTTGATAGCAAAAC+TGG - chr1_1:69273926-69273945 None:intergenic 35.0%
TTGAGGATCTGAAAACGTTA+GGG - chr1_1:69273952-69273971 None:intergenic 35.0%
ATTGAGGATCTGAAAACGTT+AGG - chr1_1:69273953-69273972 None:intergenic 35.0%
CCCTAAGATTAATTGATCAG+AGG + chr1_1:69274049-69274068 Msa0039560:intron 35.0%
AGTACAAAATCGCAACAATG+TGG - chr1_1:69274125-69274144 None:intergenic 35.0%
CTAGTTTATGATTATCGGTG+GGG + chr1_1:69274222-69274241 Msa0039560:intron 35.0%
AGGGATACACAGAAAAACTA+AGG - chr1_1:69274260-69274279 None:intergenic 35.0%
TGTGTATCCCTAGTTTAAAC+TGG + chr1_1:69274269-69274288 Msa0039560:intron 35.0%
TCCCTAGTTTAAACTGGATT+AGG + chr1_1:69274275-69274294 Msa0039560:intron 35.0%
AAAACTAGGGATACAGAACT+CGG - chr1_1:69274303-69274322 None:intergenic 35.0%
GAGCTAGAGATTTACTATGA+GGG - chr1_1:69274349-69274368 None:intergenic 35.0%
AGAGCTAGAGATTTACTATG+AGG - chr1_1:69274350-69274369 None:intergenic 35.0%
! TCATAGTAAATCTCTAGCTC+TGG + chr1_1:69274349-69274368 Msa0039560:intron 35.0%
!!! TCTGTAGCATTTTTTCATGG+AGG + chr1_1:69274814-69274833 Msa0039560:intron 35.0%
CAGATGAATGGAGAAATTGA+GGG - chr1_1:69275302-69275321 None:intergenic 35.0%
TCGATTAAGAAGCAGATGAA+TGG - chr1_1:69275314-69275333 None:intergenic 35.0%
AATCGATGCAGTCATATGTT+AGG + chr1_1:69275328-69275347 Msa0039560:three_prime_UTR 35.0%
CTTGATGTAAATCTCATGAG+TGG + chr1_1:69275685-69275704 Msa0039560:three_prime_UTR 35.0%
! CTCATGAGTGGTTTTCAATT+TGG + chr1_1:69275697-69275716 Msa0039560:three_prime_UTR 35.0%
! TCACCCAATGAGTTGAATAT+AGG + chr1_1:69275783-69275802 Msa0039560:three_prime_UTR 35.0%
AGCTACCTTGTAAGAAATCT+TGG + chr1_1:69275936-69275955 Msa0039560:three_prime_UTR 35.0%
TACGTCCAAGATTTCTTACA+AGG - chr1_1:69275944-69275963 None:intergenic 35.0%
ACGTAATCAACTTCTTTCAC+TGG + chr1_1:69275959-69275978 Msa0039560:three_prime_UTR 35.0%
CAACTTCTTTCACTGGATAA+TGG + chr1_1:69275966-69275985 Msa0039560:three_prime_UTR 35.0%
! ATTTCTAGGAACCACTGAAA+TGG - chr1_1:69276331-69276350 None:intergenic 35.0%
AATGAGTGCAGGTAATTTCT+AGG - chr1_1:69276345-69276364 None:intergenic 35.0%
AACTGAATTGGAGATCAAAC+CGG - chr1_1:69276824-69276843 None:intergenic 35.0%
GAAAATGTAGAAAGTCCAGA+CGG + chr1_1:69276912-69276931 Msa0039560:three_prime_UTR 35.0%
TACATGTTTATCTCAACGGT+AGG + chr1_1:69276974-69276993 Msa0039560:three_prime_UTR 35.0%
AGTTTGATTCATGGTTTCTC+TGG - chr1_1:69277005-69277024 None:intergenic 35.0%
! GATGAAGCATCTGATACATA+CGG + chr1_1:69277070-69277089 Msa0039560:three_prime_UTR 35.0%
! ATGAAGCATCTGATACATAC+GGG + chr1_1:69277071-69277090 Msa0039560:three_prime_UTR 35.0%
CATTTCCACTTGTTTAGGTA+AGG - chr1_1:69277097-69277116 None:intergenic 35.0%
!! TTTACAAGTTTGCTATGTGC+TGG + chr1_1:69277273-69277292 Msa0039560:three_prime_UTR 35.0%
GGAATCATAACAAAGAGCAA+TGG - chr1_1:69277306-69277325 None:intergenic 35.0%
TTGAGGTAAGTGAAATATCC+CGG + chr1_1:69277477-69277496 Msa0039560:intron 35.0%
ATTGATGCAAATAAAGCTCC+GGG - chr1_1:69277498-69277517 None:intergenic 35.0%
GACAAGCTTCAAGTATGAAT+TGG + chr1_1:69277608-69277627 Msa0039560:three_prime_UTR 35.0%
TCAAGTATGAATTGGGTCAT+TGG + chr1_1:69277616-69277635 Msa0039560:three_prime_UTR 35.0%
TGTTACTAGTTATGTATGGG+AGG + chr1_1:69277771-69277790 Msa0039560:three_prime_UTR 35.0%
TCCACAGACTCAATGTCTTA+TGG + chr1_1:69272621-69272640 Msa0039560:intron 40.0%
ACCATAAGACATTGAGTCTG+TGG - chr1_1:69272625-69272644 None:intergenic 40.0%
ACTGGATAGGATCATCACAA+TGG - chr1_1:69272699-69272718 None:intergenic 40.0%
ATACCGCTGTTGAGTCATAA+GGG - chr1_1:69272730-69272749 None:intergenic 40.0%
! AGAGACAAGTTCGACTTGAT+GGG + chr1_1:69272751-69272770 Msa0039560:intron 40.0%
!! GTGTTGTTGGTTCACAAACA+AGG + chr1_1:69272789-69272808 Msa0039560:intron 40.0%
GTAGAGAATGTCACACTTGA+GGG + chr1_1:69272827-69272846 Msa0039560:intron 40.0%
GCAACGAGAATGAGTATCAA+TGG - chr1_1:69273010-69273029 None:intergenic 40.0%
GGTGTGAAATACAATTGAGG+TGG + chr1_1:69273247-69273266 Msa0039560:intron 40.0%
ACGGCGTTAACATAAGACAT+TGG - chr1_1:69273511-69273530 None:intergenic 40.0%
TAGAGTGGGATTGGGTTTAT+AGG - chr1_1:69273567-69273586 None:intergenic 40.0%
GAAAGCTTCAATTGATCTCC+AGG + chr1_1:69273713-69273732 Msa0039560:intron 40.0%
AGGAACAAGAGAGAGTTCTA+TGG - chr1_1:69273745-69273764 None:intergenic 40.0%
AATTCGACTGAAGAGCTTGA+TGG - chr1_1:69273778-69273797 None:intergenic 40.0%
TTGAAGGATTCGATTGAGGA+AGG - chr1_1:69273805-69273824 None:intergenic 40.0%
TCGATTGAAGGATTCGATTG+AGG - chr1_1:69273809-69273828 None:intergenic 40.0%
GGAAGTAGAGATTCGATTGA+AGG - chr1_1:69273821-69273840 None:intergenic 40.0%
TCCTCAATCGATTAGAGTGA+AGG + chr1_1:69273965-69273984 Msa0039560:CDS 40.0%
ACCTTCACTCTAATCGATTG+AGG - chr1_1:69273969-69273988 None:intergenic 40.0%
GAGAAGTTATGTGTCTAGGA+AGG + chr1_1:69274497-69274516 Msa0039560:intron 40.0%
TGATTGAGTGGAATGTTGGT+TGG + chr1_1:69274607-69274626 Msa0039560:intron 40.0%
! GTTGGTGAAGGTAAAACAGT+TGG + chr1_1:69274625-69274644 Msa0039560:intron 40.0%
TGAATAGTGTGAGCAGAATG+TGG + chr1_1:69274655-69274674 Msa0039560:intron 40.0%
!!! GCTATGGTTTTTGGCTTCTA+TGG + chr1_1:69274784-69274803 Msa0039560:intron 40.0%
!!! GTAGCATTTTTTCATGGAGG+CGG + chr1_1:69274817-69274836 Msa0039560:intron 40.0%
GATAACCTGCAAAATTCTGC+AGG + chr1_1:69274844-69274863 Msa0039560:intron 40.0%
! CAAAACCTGCAGAATTTTGC+AGG - chr1_1:69274852-69274871 None:intergenic 40.0%
CATAACCTGCAGAAAATTGC+AGG - chr1_1:69274921-69274940 None:intergenic 40.0%
! TGCAGGTTATGCTGCATTTT+TGG + chr1_1:69274930-69274949 Msa0039560:intron 40.0%
CATTCTTCAGGGTTCTTCAT+CGG + chr1_1:69275227-69275246 Msa0039560:CDS 40.0%
GCAGATGAATGGAGAAATTG+AGG - chr1_1:69275303-69275322 None:intergenic 40.0%
AAGACATTGTTTGGCTGATG+AGG - chr1_1:69275363-69275382 None:intergenic 40.0%
TCAATATGTGGTCTCACTGA+AGG + chr1_1:69275382-69275401 Msa0039560:three_prime_UTR 40.0%
AGAAAGAACCGAGTCTGAAA+GGG + chr1_1:69275572-69275591 Msa0039560:three_prime_UTR 40.0%
TTCACAAACCCTTTCAGACT+CGG - chr1_1:69275583-69275602 None:intergenic 40.0%
ATGAGCAGAGAGACTACATA+AGG + chr1_1:69276100-69276119 Msa0039560:three_prime_UTR 40.0%
ATTTGTGAGCCACTGTAAGA+TGG + chr1_1:69276227-69276246 Msa0039560:three_prime_UTR 40.0%
TCCTAGTAACCATCTTACAG+TGG - chr1_1:69276239-69276258 None:intergenic 40.0%
ACTGTAAGATGGTTACTAGG+AGG + chr1_1:69276238-69276257 Msa0039560:three_prime_UTR 40.0%
TGGTTCAACCAGTTCAATTG+CGG - chr1_1:69276792-69276811 None:intergenic 40.0%
TATCAGATGCTTCATCTGTC+GGG - chr1_1:69277066-69277085 None:intergenic 40.0%
GTATCAGATGCTTCATCTGT+CGG - chr1_1:69277067-69277086 None:intergenic 40.0%
GGGTCAGTTTCATAAGTTTG+AGG + chr1_1:69277460-69277479 Msa0039560:three_prime_UTR 40.0%
AGTATGAATTGGGTCATTGG+TGG + chr1_1:69277619-69277638 Msa0039560:three_prime_UTR 40.0%
! TGGGTAAAAGCAAGAAGTGT+TGG + chr1_1:69277741-69277760 Msa0039560:three_prime_UTR 40.0%
TTATGTATGGGAGGAACTTG+TGG + chr1_1:69277780-69277799 Msa0039560:three_prime_UTR 40.0%
TGGAGGAGTTGTTATGCTAT+AGG + chr1_1:69277812-69277831 Msa0039560:three_prime_UTR 40.0%
TATGTGCACTCTCACTAGTG+CGG + chr1_1:69272662-69272681 Msa0039560:intron 45.0%
GATACCGCTGTTGAGTCATA+AGG - chr1_1:69272731-69272750 None:intergenic 45.0%
! CAGAGACAAGTTCGACTTGA+TGG + chr1_1:69272750-69272769 Msa0039560:intron 45.0%
! GAGACAAGTTCGACTTGATG+GGG + chr1_1:69272752-69272771 Msa0039560:intron 45.0%
GTGGGAGAGATTTGTGTTGT+TGG + chr1_1:69272776-69272795 Msa0039560:intron 45.0%
GGTAGAGAATGTCACACTTG+AGG + chr1_1:69272826-69272845 Msa0039560:intron 45.0%
AGAATGTCACACTTGAGGGA+GGG + chr1_1:69272831-69272850 Msa0039560:intron 45.0%
AGAGTTCTATGGCTATAGCC+TGG - chr1_1:69273734-69273753 None:intergenic 45.0%
! ACTGAAGAGCTTGATGGCAT+GGG - chr1_1:69273772-69273791 None:intergenic 45.0%
GTTTATGATTATCGGTGGGG+AGG + chr1_1:69274225-69274244 Msa0039560:intron 45.0%
!!! TAGCTCTGGCAACGTTCTTT+TGG + chr1_1:69274363-69274382 Msa0039560:intron 45.0%
!!! GCAACGTTCTTTTGGAGCAA+TGG + chr1_1:69274371-69274390 Msa0039560:intron 45.0%
GGGTACTTATCGATCAGATC+AGG - chr1_1:69274533-69274552 None:intergenic 45.0%
!! AGTGGAATGTTGGTTGGTGA+AGG + chr1_1:69274613-69274632 Msa0039560:intron 45.0%
GGTGAAGGTAAAACAGTTGG+AGG + chr1_1:69274628-69274647 Msa0039560:intron 45.0%
TGTGGTTGCTTCTGTTGTGA+TGG + chr1_1:69274673-69274692 Msa0039560:intron 45.0%
GTGGTTGCTTCTGTTGTGAT+GGG + chr1_1:69274674-69274693 Msa0039560:intron 45.0%
!! TTCTGTTGTGATGGGCTGTT+TGG + chr1_1:69274682-69274701 Msa0039560:intron 45.0%
! GTGAACCTGCAATTTTCTGC+AGG + chr1_1:69274913-69274932 Msa0039560:intron 45.0%
AGGGTTCTTGTAGTGATCGA+GGG + chr1_1:69275196-69275215 Msa0039560:intron 45.0%
! AGGGTACTTCTCCATTCTTC+AGG + chr1_1:69275215-69275234 Msa0039560:CDS 45.0%
GGGTACTTCTCCATTCTTCA+GGG + chr1_1:69275216-69275235 Msa0039560:CDS 45.0%
CGATGAAGAACCCTGAAGAA+TGG - chr1_1:69275229-69275248 None:intergenic 45.0%
! TTTGGCTGATGAGGTGGTTT+TGG - chr1_1:69275354-69275373 None:intergenic 45.0%
ACATTGTTTGGCTGATGAGG+TGG - chr1_1:69275360-69275379 None:intergenic 45.0%
GAGAAAGAACCGAGTCTGAA+AGG + chr1_1:69275571-69275590 Msa0039560:three_prime_UTR 45.0%
GTGATGTTGTTGTAGGCTTG+AGG + chr1_1:69276076-69276095 Msa0039560:intron 45.0%
GCCACTGTAAGATGGTTACT+AGG + chr1_1:69276235-69276254 Msa0039560:three_prime_UTR 45.0%
CAGTTCAATTGCGGTTACAC+TGG - chr1_1:69276783-69276802 None:intergenic 45.0%
CAGTGTAACCGCAATTGAAC+TGG + chr1_1:69276781-69276800 Msa0039560:three_prime_UTR 45.0%
GGTTGAACCACATGTCTATC+CGG + chr1_1:69276802-69276821 Msa0039560:three_prime_UTR 45.0%
GATCAAACCGGATAGACATG+TGG - chr1_1:69276812-69276831 None:intergenic 45.0%
ATCATAAACCATGCTCCGTC+TGG - chr1_1:69276930-69276949 None:intergenic 45.0%
! TCTCTAGCTCCTAATGCTAG+AGG - chr1_1:69277651-69277670 None:intergenic 45.0%
TCTAGCATTAGGAGCTAGAG+AGG + chr1_1:69277650-69277669 Msa0039560:three_prime_UTR 45.0%
TGATTGTGGGATGTGAAGCA+TGG + chr1_1:69277708-69277727 Msa0039560:three_prime_UTR 45.0%
GATTGTGGGATGTGAAGCAT+GGG + chr1_1:69277709-69277728 Msa0039560:three_prime_UTR 45.0%
ATTGTGGGATGTGAAGCATG+GGG + chr1_1:69277710-69277729 Msa0039560:three_prime_UTR 45.0%
!! TTTAAATATGAAAAAAAATA+AGG + chr1_1:69273343-69273362 Msa0039560:intron 5.0%
!! AAATAATAAAAAGATAAAAA+AGG - chr1_1:69275739-69275758 None:intergenic 5.0%
TCGCCCTTATGACTCAACAG+CGG + chr1_1:69272724-69272743 Msa0039560:intron 50.0%
! AAGTTCGACTTGATGGGGAG+TGG + chr1_1:69272757-69272776 Msa0039560:intron 50.0%
! AGTTCGACTTGATGGGGAGT+GGG + chr1_1:69272758-69272777 Msa0039560:intron 50.0%
GAGAATGTCACACTTGAGGG+AGG + chr1_1:69272830-69272849 Msa0039560:intron 50.0%
! GACTGAAGAGCTTGATGGCA+TGG - chr1_1:69273773-69273792 None:intergenic 50.0%
!!! GCATTTTTTCATGGAGGCGG+TGG + chr1_1:69274820-69274839 Msa0039560:intron 50.0%
CAGGGTTCTTGTAGTGATCG+AGG + chr1_1:69275195-69275214 Msa0039560:intron 50.0%
GGAATGTGGGTCCATTTCAG+TGG + chr1_1:69276317-69276336 Msa0039560:three_prime_UTR 50.0%
TAGAAAGTCCAGACGGAGCA+TGG + chr1_1:69276919-69276938 Msa0039560:three_prime_UTR 50.0%
ACGGGCCTTACCTAAACAAG+TGG + chr1_1:69277089-69277108 Msa0039560:three_prime_UTR 50.0%
TGGTCGAGACCTCTAGCATT+AGG + chr1_1:69277639-69277658 Msa0039560:three_prime_UTR 50.0%
! GGAGCTAGAGAGGTGTAATC+AGG + chr1_1:69277660-69277679 Msa0039560:three_prime_UTR 50.0%
! GCTAGAGAGGTGTAATCAGG+AGG + chr1_1:69277663-69277682 Msa0039560:three_prime_UTR 50.0%
GAGGTGTAATCAGGAGGCTA+CGG + chr1_1:69277669-69277688 Msa0039560:three_prime_UTR 50.0%
GTAATCAGGAGGCTACGGAA+TGG + chr1_1:69277674-69277693 Msa0039560:three_prime_UTR 50.0%
!!! TGGAGGGGAGGTTTTGATTG+TGG + chr1_1:69277694-69277713 Msa0039560:three_prime_UTR 50.0%
!!! GGAGGGGAGGTTTTGATTGT+GGG + chr1_1:69277695-69277714 Msa0039560:three_prime_UTR 50.0%
ATGGGAGGAACTTGTGGACT+TGG + chr1_1:69277786-69277805 Msa0039560:three_prime_UTR 50.0%
!! GGAACTTGTGGACTTGGTGT+TGG + chr1_1:69277792-69277811 Msa0039560:three_prime_UTR 50.0%
!! ACTTGTGGACTTGGTGTTGG+AGG + chr1_1:69277795-69277814 Msa0039560:three_prime_UTR 50.0%
AAGGGCGAGCATCACTGGAT+AGG - chr1_1:69272712-69272731 None:intergenic 55.0%
GTCATAAGGGCGAGCATCAC+TGG - chr1_1:69272717-69272736 None:intergenic 55.0%
! AGCTTGATGGCATGGGAGAG+AGG - chr1_1:69273765-69273784 None:intergenic 55.0%
ATCAGGAGGCTACGGAATGG+AGG + chr1_1:69277677-69277696 Msa0039560:three_prime_UTR 55.0%
TCAGGAGGCTACGGAATGGA+GGG + chr1_1:69277678-69277697 Msa0039560:three_prime_UTR 55.0%
TGAAGCATGGGGTTGTGTCG+TGG + chr1_1:69277721-69277740 Msa0039560:three_prime_UTR 55.0%
GAAGCATGGGGTTGTGTCGT+GGG + chr1_1:69277722-69277741 Msa0039560:three_prime_UTR 55.0%
CAGGAGGCTACGGAATGGAG+GGG + chr1_1:69277679-69277698 Msa0039560:three_prime_UTR 60.0%
GAGGCTACGGAATGGAGGGG+AGG + chr1_1:69277682-69277701 Msa0039560:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69272372 69277993 69272372 ID=Msa0039560;Name=Msa0039560
chr1_1 mRNA 69272372 69277993 69272372 ID=Msa0039560-mRNA-1;Parent=Msa0039560;Name=Msa0039560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|0.83|0.2|0.16|6|2380|103
chr1_1 exon 69272372 69272374 69272372 ID=Msa0039560-mRNA-1:exon:22650;Parent=Msa0039560-mRNA-1
chr1_1 exon 69273735 69273986 69273735 ID=Msa0039560-mRNA-1:exon:22651;Parent=Msa0039560-mRNA-1
chr1_1 exon 69275198 69275403 69275198 ID=Msa0039560-mRNA-1:exon:22652;Parent=Msa0039560-mRNA-1
chr1_1 exon 69275568 69275987 69275568 ID=Msa0039560-mRNA-1:exon:22653;Parent=Msa0039560-mRNA-1
chr1_1 exon 69276091 69277481 69276091 ID=Msa0039560-mRNA-1:exon:22654;Parent=Msa0039560-mRNA-1
chr1_1 exon 69277574 69277993 69277574 ID=Msa0039560-mRNA-1:exon:22655;Parent=Msa0039560-mRNA-1
chr1_1 CDS 69272372 69272374 69272372 ID=Msa0039560-mRNA-1:cds;Parent=Msa0039560-mRNA-1
chr1_1 CDS 69273735 69273986 69273735 ID=Msa0039560-mRNA-1:cds;Parent=Msa0039560-mRNA-1
chr1_1 CDS 69275198 69275254 69275198 ID=Msa0039560-mRNA-1:cds;Parent=Msa0039560-mRNA-1
chr1_1 three_prime_UTR 69275255 69275403 69275255 ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
chr1_1 three_prime_UTR 69275568 69275987 69275568 ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
chr1_1 three_prime_UTR 69276091 69277481 69276091 ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
chr1_1 three_prime_UTR 69277574 69277993 69277574 ID=Msa0039560-mRNA-1:three_prime_utr;Parent=Msa0039560-mRNA-1
Gene Sequence

>Msa0039560

TTGGCTATAGCCATAGAACTCTCTCTTGTTCCTCTCTCCCATGCCATCAAGCTCTTCAGTCGAATTCTCTCCTTCCTCAATCGAATCCTTCAATCGAATCTCTACTTCCTCATTAAACACTTCAACCCTTCAATCGAACTCTATTGTTCCTCAATCATACTATTCTGCATCTTCAGTCTTGCAATTGTTCTCCAGTTTTGCTATCAAACTCTTCTGTCCCTAACGTTTTCAGATCCTCAATCGATTAGAGTGAAGGGTTCTTGTAGTGATCGAGGGTACTTCTCCATTCTTCAGGGTTCTTCATCGGTTTGA
Protein sequence

>Msa0039560

LAIAIELSLVPLSHAIKLFSRILSFLNRILQSNLYFLIKHFNPSIELYCSSIILFCIFSLAIVLQFCYQTLLSLTFSDPQSIRVKGSCSDRGYFSILQGSSSV*