AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCACATGATTACACTTT+TGG 0.184714 3_4:-17284959 None:intergenic
CTAGCACCATCTATCATTCT+TGG 0.250955 3_4:-17284079 None:intergenic
TGCTAGCAATATTATATCTT+TGG 0.281745 3_4:+17284096 Msa0493000:three_prime_UTR
GTTATAACAACTCTTGATTC+TGG 0.285979 3_4:-17284864 None:intergenic
CAGGATTATCGAGAACTCTA+TGG 0.306776 3_4:+17281464 Msa0493000:CDS
TTAGCACTACCTATCATTCT+TGG 0.309162 3_4:-17284124 None:intergenic
TTGATTATGTAATATTATAA+TGG 0.309979 3_4:+17285116 Msa0493000:three_prime_UTR
AAGGTCCATGTCTTTGCTTC+AGG 0.331825 3_4:+17275697 Msa0493000:CDS
TCGAGGCAGGGCTAGACCAC+TGG 0.333673 3_4:+17283600 Msa0493000:CDS
GGGCAATAGCCCGTCGAGGC+AGG 0.348507 3_4:+17283587 Msa0493000:CDS
GTGGTCTAGCCCTGCCTCGA+CGG 0.386625 3_4:-17283597 None:intergenic
GACGTACTCGTTAAGGATTA+TGG 0.411957 3_4:+17283778 Msa0493000:three_prime_UTR
TGATTGGGACGTACTCGTTA+AGG 0.428617 3_4:+17283771 Msa0493000:three_prime_UTR
CTCTTGATTCTGGACTAGTA+TGG 0.439151 3_4:-17284854 None:intergenic
AATCTAATAGATTGTGAAGA+AGG 0.439309 3_4:+17281491 Msa0493000:CDS
AACTAGTCATGGTAATTGAC+TGG 0.448911 3_4:+17285073 Msa0493000:three_prime_UTR
GTGTGTATGAGCTGCAAGGC+CGG 0.461065 3_4:+17283566 Msa0493000:CDS
TTGGTCCTTCCAAGAATGAT+AGG 0.462557 3_4:+17284115 Msa0493000:three_prime_UTR
TGGTCTAGCCCTGCCTCGAC+GGG 0.468728 3_4:-17283596 None:intergenic
GATGCACACTAAACTTGAAA+AGG 0.474030 3_4:-17284908 None:intergenic
TTTGTGGGTTGACTTTATAG+AGG 0.481644 3_4:+17285166 Msa0493000:three_prime_UTR
TGCCTCGACGGGCTATTGCC+CGG 0.494352 3_4:-17283585 None:intergenic
GTCCTTCCAAGAATGATAGA+TGG 0.504527 3_4:+17284073 Msa0493000:three_prime_UTR
AGAAGAGTATGCTTTACATC+AGG 0.509748 3_4:+17281445 Msa0493000:CDS
CTATAAAGTCAACCCACAAA+AGG 0.509797 3_4:-17285163 None:intergenic
CGAGGCAGGGCTAGACCACT+GGG 0.510951 3_4:+17283601 Msa0493000:CDS
GGCAATAGCCCGTCGAGGCA+GGG 0.533767 3_4:+17283588 Msa0493000:CDS
TAAGGTGAAACACGTGTGAA+AGG 0.540571 3_4:+17283735 Msa0493000:three_prime_UTR
AATAAATTCTCGACCGACAG+CGG 0.541507 3_4:-17285022 None:intergenic
ATCTAATAGATTGTGAAGAA+GGG 0.555097 3_4:+17281492 Msa0493000:CDS
TGTGTATGAGCTGCAAGGCC+GGG 0.555305 3_4:+17283567 Msa0493000:CDS
CACTACCTATCATTCTTGGA+AGG 0.556944 3_4:-17284120 None:intergenic
ATTTCGAGATAGGCTAAGAA+TGG 0.561507 3_4:-17284934 None:intergenic
AGGATTATCGAGAACTCTAT+GGG 0.562593 3_4:+17281465 Msa0493000:CDS
AGGTGTATATGATGAAAAGT+CGG 0.567433 3_4:-17284888 None:intergenic
CATTGTGAAGAGTGGTGGCA+TGG 0.571166 3_4:-17275657 None:intergenic
ACTCTTCACAATGGATGCAA+TGG 0.572417 3_4:+17275667 Msa0493000:CDS
AAGGTGAAACACGTGTGAAA+GGG 0.578819 3_4:+17283736 Msa0493000:three_prime_UTR
GAGGAGGAGGATGTGACTCT+TGG 0.583659 3_4:-17275616 None:intergenic
CACCATCTATCATTCTTGGA+AGG 0.596733 3_4:-17284075 None:intergenic
TTTAATACTACTTCCGCTGT+CGG 0.597289 3_4:+17285009 Msa0493000:three_prime_UTR
AATAATTTGCAGCAATCTAG+CGG 0.601619 3_4:+17283712 Msa0493000:three_prime_UTR
ACTAGTCATGGTAATTGACT+GGG 0.604015 3_4:+17285074 Msa0493000:three_prime_UTR
TTTGCAGCAATCTAGCGGTA+AGG 0.606496 3_4:+17283717 Msa0493000:three_prime_UTR
ATTGTGAAGAGTGGTGGCAT+GGG 0.620190 3_4:-17275656 None:intergenic
GTGAAACACGTGTGAAAGGG+AGG 0.639259 3_4:+17283739 Msa0493000:three_prime_UTR
GAGTACCTGAAGCAAAGACA+TGG 0.639618 3_4:-17275702 None:intergenic
CATGCCACCACTCTTCACAA+TGG 0.652058 3_4:+17275658 Msa0493000:CDS
GGCCGGGCAATAGCCCGTCG+AGG 0.667621 3_4:+17283583 Msa0493000:CDS
TGTGTGACAAACTTAAACAG+TGG 0.678598 3_4:+17284051 Msa0493000:three_prime_UTR
GCATCCATTGTGAAGAGTGG+TGG 0.679601 3_4:-17275662 None:intergenic
ATTGCATCCATTGTGAAGAG+TGG 0.692387 3_4:-17275665 None:intergenic
GGTTGTGTGTATGAGCTGCA+AGG 0.710842 3_4:+17283562 Msa0493000:CDS
TGGATGCAATGGATACACAA+AGG 0.717584 3_4:+17275678 Msa0493000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATTAAAAAAATAAA+AGG - chr3_4:17282090-17282109 None:intergenic 0.0%
!!! ATATTTTTTATTTAATTTAA+TGG - chr3_4:17283811-17283830 None:intergenic 0.0%
!!! ATAAATTGGTTTTTTTTTTA+AGG - chr3_4:17278713-17278732 None:intergenic 10.0%
!! TTAAAAAAAAAACCAATTTA+TGG + chr3_4:17278712-17278731 Msa0493000:intron 10.0%
!!! GTTTTTTTATTTATTTTATG+TGG + chr3_4:17279023-17279042 Msa0493000:intron 10.0%
!!! ATTATTTTTATACGAAAAAA+TGG + chr3_4:17279481-17279500 Msa0493000:intron 10.0%
!!! TAATACTGTTTTTTTTATAA+AGG - chr3_4:17279523-17279542 None:intergenic 10.0%
!!! TTAACCTTTTTTTTTTTTTT+TGG + chr3_4:17281390-17281409 Msa0493000:intron 10.0%
!!! TAACCTTTTTTTTTTTTTTT+GGG + chr3_4:17281391-17281410 Msa0493000:intron 10.0%
!! ATTTATCTTCATTTATTTAT+TGG + chr3_4:17281537-17281556 Msa0493000:intron 10.0%
!! TTTATCTTCATTTATTTATT+GGG + chr3_4:17281538-17281557 Msa0493000:intron 10.0%
!!! AAAGAAAAAAACATTTTTTT+AGG - chr3_4:17282212-17282231 None:intergenic 10.0%
!! ATGAAGAAAAAAAATATTAT+GGG - chr3_4:17283644-17283663 None:intergenic 10.0%
!! TATGAAGAAAAAAAATATTA+TGG - chr3_4:17283645-17283664 None:intergenic 10.0%
!! TTGATTATGTAATATTATAA+TGG + chr3_4:17285116-17285135 Msa0493000:three_prime_UTR 10.0%
!! AAAAATAAAGAAAAAAAGAG+TGG - chr3_4:17275732-17275751 None:intergenic 15.0%
!!! TGAAAAGTTATATTTTATTC+TGG + chr3_4:17276091-17276110 Msa0493000:intron 15.0%
!!! TTGCATTAAAAATATGTTTT+TGG + chr3_4:17276350-17276369 Msa0493000:intron 15.0%
!! ATTCCAATTTATCTATAAAT+TGG + chr3_4:17276410-17276429 Msa0493000:intron 15.0%
!! AATAAAGTAAAAGAGATAAA+GGG - chr3_4:17276875-17276894 None:intergenic 15.0%
!! AAATAAAGTAAAAGAGATAA+AGG - chr3_4:17276876-17276895 None:intergenic 15.0%
!!! TAAAATAAAGTGCTTATAAA+AGG - chr3_4:17276945-17276964 None:intergenic 15.0%
!!! TATAAGCACTTTATTTTAAT+TGG + chr3_4:17276947-17276966 Msa0493000:intron 15.0%
!! AGAACATATATAAAAAAGAT+TGG - chr3_4:17277093-17277112 None:intergenic 15.0%
!!! ATGTTGTTTAAAAAAATCTA+AGG - chr3_4:17277283-17277302 None:intergenic 15.0%
!! TACATATTTCAAATAATTAG+AGG + chr3_4:17277558-17277577 Msa0493000:intron 15.0%
!! ACATATTTCAAATAATTAGA+GGG + chr3_4:17277559-17277578 Msa0493000:intron 15.0%
!!! AGTAACGTTTTATTATTTTT+TGG - chr3_4:17277763-17277782 None:intergenic 15.0%
!! ATAATGCATAAATGTAATAA+GGG + chr3_4:17277842-17277861 Msa0493000:intron 15.0%
!!! TACTATTAAAATTTGCTTTT+AGG - chr3_4:17278505-17278524 None:intergenic 15.0%
!! TTTAATTCTTCAAAGATAAT+TGG + chr3_4:17279222-17279241 Msa0493000:intron 15.0%
!!! AAATTGGTAATATAAATAAG+GGG - chr3_4:17279558-17279577 None:intergenic 15.0%
!!! CAAATTGGTAATATAAATAA+GGG - chr3_4:17279559-17279578 None:intergenic 15.0%
!!! ACAAATTGGTAATATAAATA+AGG - chr3_4:17279560-17279579 None:intergenic 15.0%
!!! CTTTTTTACTCTTTATTTTT+TGG - chr3_4:17279595-17279614 None:intergenic 15.0%
!!! GATTTTTTTTTTTGTGAATT+AGG - chr3_4:17279758-17279777 None:intergenic 15.0%
!! GAATAAAAAAAACAGTTTAA+AGG + chr3_4:17280413-17280432 Msa0493000:intron 15.0%
!! ATACCCAAAAAAAAAAAAAA+AGG - chr3_4:17281397-17281416 None:intergenic 15.0%
!! AGATGAAAATGTATAATATA+CGG - chr3_4:17282066-17282085 None:intergenic 15.0%
!!! AAATTTTCATAAAACATGTA+CGG + chr3_4:17282140-17282159 Msa0493000:intron 15.0%
!! ATAAATTAACATATATGTAG+AGG + chr3_4:17282574-17282593 Msa0493000:intron 15.0%
!! TTTGCACATTTAAAAATAAT+TGG - chr3_4:17282674-17282693 None:intergenic 15.0%
!! AATGTTTATGATTCAAATAT+TGG - chr3_4:17284015-17284034 None:intergenic 15.0%
!!! TAAATAACAATGATTTTCAA+TGG - chr3_4:17284794-17284813 None:intergenic 15.0%
!! ATTAAATCCACAATCAAATA+TGG - chr3_4:17276183-17276202 None:intergenic 20.0%
!! AATATTATTACTGTGTCTAA+CGG + chr3_4:17276290-17276309 Msa0493000:intron 20.0%
!! AGACCAATTTATAGATAAAT+TGG - chr3_4:17276416-17276435 None:intergenic 20.0%
!!! ATTTGTTATATCTACACATT+TGG + chr3_4:17276588-17276607 Msa0493000:intron 20.0%
!!! ATTGTAACTCTTATTTGTAT+TGG + chr3_4:17276625-17276644 Msa0493000:intron 20.0%
!!! TTGTAACTCTTATTTGTATT+GGG + chr3_4:17276626-17276645 Msa0493000:intron 20.0%
!! CATATATAAAAAAGATTGGA+GGG - chr3_4:17277089-17277108 None:intergenic 20.0%
!! ACATATATAAAAAAGATTGG+AGG - chr3_4:17277090-17277109 None:intergenic 20.0%
!! GTTTAAAAAAATCTAAGGAT+TGG - chr3_4:17277278-17277297 None:intergenic 20.0%
!! CATAATGCATAAATGTAATA+AGG + chr3_4:17277841-17277860 Msa0493000:intron 20.0%
!!! TTCTTTGAAAGATATATTTG+TGG + chr3_4:17277975-17277994 Msa0493000:intron 20.0%
!!! ACAAACTTTAACATTTTTGT+AGG + chr3_4:17278264-17278283 Msa0493000:intron 20.0%
!! AAAACATATCAACCAATTTA+CGG + chr3_4:17278682-17278701 Msa0493000:intron 20.0%
!!! ATTGGTTTTTTTTTTAAGGA+AGG - chr3_4:17278709-17278728 None:intergenic 20.0%
!!! TTTCCTTATTTTTTGTGTTT+GGG - chr3_4:17278752-17278771 None:intergenic 20.0%
!! ATGCATATATAAGATAAGTT+GGG + chr3_4:17278849-17278868 Msa0493000:intron 20.0%
!! TTTAATCTTCTTATCATGTT+AGG + chr3_4:17278957-17278976 Msa0493000:intron 20.0%
!! ATCAAATTGTCAGAAAATTT+AGG - chr3_4:17278993-17279012 None:intergenic 20.0%
!!! ATTTATTTTATGTGGACATA+TGG + chr3_4:17279031-17279050 Msa0493000:intron 20.0%
!! CTAAAAACAATATATAGAGA+AGG - chr3_4:17279361-17279380 None:intergenic 20.0%
!!! TCTCTATATATTGTTTTTAG+AGG + chr3_4:17279361-17279380 Msa0493000:intron 20.0%
!! TTTATCTCTATCATTATACT+TGG + chr3_4:17279443-17279462 Msa0493000:intron 20.0%
!! GGCTATTAATTAATACAAAT+TGG - chr3_4:17279574-17279593 None:intergenic 20.0%
!! CTATGATATGATAATTGATA+GGG - chr3_4:17279893-17279912 None:intergenic 20.0%
!! TCTATGATATGATAATTGAT+AGG - chr3_4:17279894-17279913 None:intergenic 20.0%
!! TACCAAGAAATATTGAAAAA+TGG + chr3_4:17279984-17280003 Msa0493000:intron 20.0%
!!! ATCCATTTTTCAATATTTCT+TGG - chr3_4:17279989-17280008 None:intergenic 20.0%
!! ACAATTCTAATAATACTATG+TGG - chr3_4:17280086-17280105 None:intergenic 20.0%
!! AAATATTGAGATCATATTAG+TGG + chr3_4:17280340-17280359 Msa0493000:intron 20.0%
!!! TACATGTTTATTATGGATTA+TGG - chr3_4:17280464-17280483 None:intergenic 20.0%
!! CATTCTTTACATGTTTATTA+TGG - chr3_4:17280471-17280490 None:intergenic 20.0%
!! ACAATTAAAAAGAATACACA+AGG - chr3_4:17280572-17280591 None:intergenic 20.0%
!!! TTACTTTTAAGCAACAATTT+AGG - chr3_4:17280668-17280687 None:intergenic 20.0%
!!! TGTTGCTTAAAAGTAATATT+AGG + chr3_4:17280672-17280691 Msa0493000:intron 20.0%
!! ATTGCCAAAAAATTATCATA+TGG - chr3_4:17280784-17280803 None:intergenic 20.0%
!!! TTTTTTTTGGGTATTCTTTT+AGG + chr3_4:17281403-17281422 Msa0493000:intron 20.0%
!!! TTGTAGTTTTTTTTTTGTGT+GGG + chr3_4:17283091-17283110 Msa0493000:intron 20.0%
!! TTGAAAAAAGTTAACTTTGA+TGG - chr3_4:17283693-17283712 None:intergenic 20.0%
!! TGACAGTACATATAATATTT+AGG + chr3_4:17283912-17283931 Msa0493000:intron 20.0%
!! GACAGTACATATAATATTTA+GGG + chr3_4:17283913-17283932 Msa0493000:intron 20.0%
!! TGCTAACAATATTATATCTT+TGG + chr3_4:17284141-17284160 Msa0493000:intron 20.0%
!!! TATCTTTGGTTTTATTTAGT+TGG + chr3_4:17284155-17284174 Msa0493000:intron 20.0%
!! GATGCAATGTAATTAATAAT+GGG - chr3_4:17284638-17284657 None:intergenic 20.0%
!! AGATGCAATGTAATTAATAA+TGG - chr3_4:17284639-17284658 None:intergenic 20.0%
!!! GAATGTTTGTTGATTTAAAA+AGG + chr3_4:17284694-17284713 Msa0493000:intron 20.0%
! TAAGAAACCATATTTGATTG+TGG + chr3_4:17276173-17276192 Msa0493000:intron 25.0%
! GTTAGACACAGTAATAATAT+TGG - chr3_4:17276291-17276310 None:intergenic 25.0%
!!! TTTTAATTGCATATTGACCA+AGG + chr3_4:17276322-17276341 Msa0493000:intron 25.0%
!! TTTTTAATGCAAAGATACCT+TGG - chr3_4:17276342-17276361 None:intergenic 25.0%
!!! AATATGTTTTTGGTTAACGT+TGG + chr3_4:17276360-17276379 Msa0493000:intron 25.0%
! AATATGTACAAAAGGGTTAA+AGG + chr3_4:17277330-17277349 Msa0493000:intron 25.0%
!! TACTACAAGTTTTTCTTGTT+TGG + chr3_4:17278368-17278387 Msa0493000:intron 25.0%
! ACGAAACCTAAAAAACTTTA+GGG - chr3_4:17278408-17278427 None:intergenic 25.0%
! TACGAAACCTAAAAAACTTT+AGG - chr3_4:17278409-17278428 None:intergenic 25.0%
! ATACCCAAACACAAAAAATA+AGG + chr3_4:17278746-17278765 Msa0493000:intron 25.0%
!!! CTTTCCTTATTTTTTGTGTT+TGG - chr3_4:17278753-17278772 None:intergenic 25.0%
! CAAACACAAAAAATAAGGAA+AGG + chr3_4:17278751-17278770 Msa0493000:intron 25.0%
! AATAAGGAAAGGAAAGTAAA+AGG + chr3_4:17278762-17278781 Msa0493000:intron 25.0%
!!! TATGTTTTTCTGCTTTGTTA+AGG - chr3_4:17278800-17278819 None:intergenic 25.0%
! CAGAAAAACATAAATGATCA+TGG + chr3_4:17278808-17278827 Msa0493000:intron 25.0%
! CATGCATATATAAGATAAGT+TGG + chr3_4:17278848-17278867 Msa0493000:intron 25.0%
! TGCATATATAAGATAAGTTG+GGG + chr3_4:17278850-17278869 Msa0493000:intron 25.0%
! AAAAGTTCCATTCATTAGAT+TGG - chr3_4:17278919-17278938 None:intergenic 25.0%
!!! CTAATGAATGGAACTTTTTT+TGG + chr3_4:17278921-17278940 Msa0493000:intron 25.0%
!! AGCATACATATTTTTCTTTG+AGG + chr3_4:17279075-17279094 Msa0493000:intron 25.0%
!!! AGTTCCTTTTTTTTCAATAG+TGG + chr3_4:17279166-17279185 Msa0493000:intron 25.0%
! CAATATATAGAGAAGGTTAA+AGG - chr3_4:17279354-17279373 None:intergenic 25.0%
! AGGAAGAAGCTTATTAAAAA+TGG - chr3_4:17279690-17279709 None:intergenic 25.0%
!! TATTTTGTTGCATCATTGAT+GGG - chr3_4:17279714-17279733 None:intergenic 25.0%
!!! TTATTTTGTTGCATCATTGA+TGG - chr3_4:17279715-17279734 None:intergenic 25.0%
! AAAAATCCACATACACATTA+AGG + chr3_4:17279778-17279797 Msa0493000:intron 25.0%
! TTTATTCCTTAATGTGTATG+TGG - chr3_4:17279787-17279806 None:intergenic 25.0%
! ATTCTAATAATACTATGTGG+TGG - chr3_4:17280083-17280102 None:intergenic 25.0%
! ATATATAATGAGTGAGTGTA+TGG + chr3_4:17280367-17280386 Msa0493000:intron 25.0%
!! TGTTTATTATGGATTATGGA+TGG - chr3_4:17280460-17280479 None:intergenic 25.0%
! GCGTTTACAAAATAATGTAA+GGG - chr3_4:17280887-17280906 None:intergenic 25.0%
!!! TGTGGTGGATTTTTTATTTT+TGG - chr3_4:17281029-17281048 None:intergenic 25.0%
!!! TTTCTTGTTCTTGTTGATTT+TGG + chr3_4:17281365-17281384 Msa0493000:intron 25.0%
!!! TTCTTGTTCTTGTTGATTTT+GGG + chr3_4:17281366-17281385 Msa0493000:intron 25.0%
! AATCTAATAGATTGTGAAGA+AGG + chr3_4:17281491-17281510 Msa0493000:CDS 25.0%
! ATCTAATAGATTGTGAAGAA+GGG + chr3_4:17281492-17281511 Msa0493000:CDS 25.0%
! TTCATTAAGTACCAAATACA+AGG - chr3_4:17281658-17281677 None:intergenic 25.0%
! AATGTATTGAATGTGTTTAC+TGG - chr3_4:17281698-17281717 None:intergenic 25.0%
!! CAAATCTCATTCATAGTTTT+TGG - chr3_4:17281757-17281776 None:intergenic 25.0%
!! TTGTTTATGTCTATCGTTTT+TGG + chr3_4:17281774-17281793 Msa0493000:intron 25.0%
! TATAATTCATCTATGAAGCA+CGG + chr3_4:17281895-17281914 Msa0493000:intron 25.0%
!!! ACAAATAACATTAGCCTTTT+AGG - chr3_4:17282021-17282040 None:intergenic 25.0%
!!! AAAAACATTTTTTTAGGACG+AGG - chr3_4:17282206-17282225 None:intergenic 25.0%
! TTAAGAAATGTTGATCAACT+AGG + chr3_4:17282380-17282399 Msa0493000:intron 25.0%
! TAAGAAATGTTGATCAACTA+GGG + chr3_4:17282381-17282400 Msa0493000:intron 25.0%
!!! AACATTTTTAGCTGTTTTGA+TGG + chr3_4:17282429-17282448 Msa0493000:intron 25.0%
! GATGGTAGATGAATAAATAA+AGG + chr3_4:17282447-17282466 Msa0493000:intron 25.0%
!!! TTAGAAAAAGTTCTAAGACA+AGG - chr3_4:17282488-17282507 None:intergenic 25.0%
! AGAAATATACCTCTTATTAG+CGG - chr3_4:17282718-17282737 None:intergenic 25.0%
! ATTTCTCGTTATACATGTTT+AGG + chr3_4:17282732-17282751 Msa0493000:intron 25.0%
! TTTCTCGTTATACATGTTTA+GGG + chr3_4:17282733-17282752 Msa0493000:intron 25.0%
! AGTTTAATTACCAGTTGTTT+CGG + chr3_4:17282878-17282897 Msa0493000:intron 25.0%
!! ATTTTATTGTGACTATCTCA+TGG + chr3_4:17282924-17282943 Msa0493000:intron 25.0%
! CAGAACTAAAAACTAAAACA+TGG - chr3_4:17283002-17283021 None:intergenic 25.0%
!!! CATGTTTTAGTTTTTAGTTC+TGG + chr3_4:17283000-17283019 Msa0493000:intron 25.0%
!!! CTTGTAGTTTTTTTTTTGTG+TGG + chr3_4:17283090-17283109 Msa0493000:intron 25.0%
!!! TTTTAGAACTTACAATGACA+CGG + chr3_4:17283193-17283212 Msa0493000:intron 25.0%
!! AACCTGCTATACAAAATTTT+GGG - chr3_4:17283546-17283565 None:intergenic 25.0%
! AGTGATACATAAGTAAAAGA+TGG + chr3_4:17283849-17283868 Msa0493000:intron 25.0%
! ATTCAAATATTGGAGACAAA+TGG - chr3_4:17284005-17284024 None:intergenic 25.0%
! TGCTAGCAATATTATATCTT+TGG + chr3_4:17284096-17284115 Msa0493000:three_prime_UTR 25.0%
!!! TGGTTTTATTTAGTTGGAAT+TGG + chr3_4:17284161-17284180 Msa0493000:intron 25.0%
! TTGAAGCAAGTTTCTATTAA+GGG - chr3_4:17284373-17284392 None:intergenic 25.0%
!! TTTGAAGCAAGTTTCTATTA+AGG - chr3_4:17284374-17284393 None:intergenic 25.0%
! GTAATTTAAATAGCACAAGT+CGG - chr3_4:17284468-17284487 None:intergenic 25.0%
! CCTAAATGAAAACTAAACTA+AGG - chr3_4:17284557-17284576 None:intergenic 25.0%
!!! CCTTAGTTTAGTTTTCATTT+AGG + chr3_4:17284554-17284573 Msa0493000:intron 25.0%
!! TAGTTTAAGACATGTGAAAA+TGG + chr3_4:17284612-17284631 Msa0493000:intron 25.0%
!!! ATTGTTATTTATTGCAGACA+TGG + chr3_4:17284803-17284822 Msa0493000:intron 25.0%
! TTTAAGAGAAAAACTAGTCA+TGG + chr3_4:17285062-17285081 Msa0493000:three_prime_UTR 25.0%
! TTGTGTTGTTGTTCTTACAA+CGG - chr3_4:17275819-17275838 None:intergenic 30.0%
! TTTTGCATCTTTGTTCTTCT+AGG - chr3_4:17275916-17275935 None:intergenic 30.0%
AAGAACAAAGATGCAAAAAG+CGG + chr3_4:17275918-17275937 Msa0493000:intron 30.0%
AAAAAGAGATTTGATGCCAA+CGG - chr3_4:17276227-17276246 None:intergenic 30.0%
!!! AATCTCTTTTTTGTTACCGT+TGG + chr3_4:17276236-17276255 Msa0493000:intron 30.0%
!! GATATTGGTTGTTCTAAGAA+TGG - chr3_4:17276448-17276467 None:intergenic 30.0%
AATGTTTGAGTGCAAGATAT+TGG - chr3_4:17276463-17276482 None:intergenic 30.0%
!! TTTTAGAGACTCTTCTACAA+AGG + chr3_4:17276687-17276706 Msa0493000:intron 30.0%
!! CTACAAAGGATTGTTTTGTT+TGG + chr3_4:17276701-17276720 Msa0493000:intron 30.0%
TCGTTATTTGTAAAGGTTAC+CGG + chr3_4:17276731-17276750 Msa0493000:intron 30.0%
!! AGCTTTTAATTAGGATAAGC+CGG - chr3_4:17276753-17276772 None:intergenic 30.0%
CAACATTAAAAACCTCAAAC+TGG + chr3_4:17277055-17277074 Msa0493000:intron 30.0%
AAGCAAAGAAGTAACTTGAA+TGG - chr3_4:17277131-17277150 None:intergenic 30.0%
TCACACACAATATGTACAAA+AGG + chr3_4:17277322-17277341 Msa0493000:intron 30.0%
CACACACAATATGTACAAAA+GGG + chr3_4:17277323-17277342 Msa0493000:intron 30.0%
! ATATTTCTGATGCTGTTGTA+TGG - chr3_4:17277362-17277381 None:intergenic 30.0%
!! TTGTCTTGATAATGCTTTCT+TGG - chr3_4:17277455-17277474 None:intergenic 30.0%
!!! CTAGTACCCTAAAGTTTTTT+AGG + chr3_4:17278399-17278418 Msa0493000:intron 30.0%
ATCACTAAGATGTACTTTCA+AGG - chr3_4:17278537-17278556 None:intergenic 30.0%
AATCTTATATGCCATATGTG+TGG + chr3_4:17278637-17278656 Msa0493000:intron 30.0%
ATCTTATATGCCATATGTGT+GGG + chr3_4:17278638-17278657 Msa0493000:intron 30.0%
! TACATTTTCGGTCCATAAAT+TGG - chr3_4:17278727-17278746 None:intergenic 30.0%
! TGTGTTTGGGTATACATTTT+CGG - chr3_4:17278739-17278758 None:intergenic 30.0%
AGAGTTTCCAATCTAATGAA+TGG + chr3_4:17278909-17278928 Msa0493000:intron 30.0%
!!! TCCTTTTTTTTCAATAGTGG+AGG + chr3_4:17279169-17279188 Msa0493000:intron 30.0%
TCCTCCACTATTGAAAAAAA+AGG - chr3_4:17279173-17279192 None:intergenic 30.0%
ACTATAACACCAAATTGAAG+AGG + chr3_4:17279624-17279643 Msa0493000:intron 30.0%
! ATTTTGTTGCATCATTGATG+GGG - chr3_4:17279713-17279732 None:intergenic 30.0%
GACGATTTATTCATTAGTGT+AGG - chr3_4:17279954-17279973 None:intergenic 30.0%
CATAGAGCTTCAAATATGAA+AGG - chr3_4:17280123-17280142 None:intergenic 30.0%
!! AAACAAGAGTGTTCTATTTG+TGG - chr3_4:17280192-17280211 None:intergenic 30.0%
! CATCACTTTCAAGTAACAAT+TGG - chr3_4:17280250-17280269 None:intergenic 30.0%
! GATTGTGTGCATCATATTTT+GGG - chr3_4:17280283-17280302 None:intergenic 30.0%
! TGATTGTGTGCATCATATTT+TGG - chr3_4:17280284-17280303 None:intergenic 30.0%
AACATGTAAAGAATGTGTGA+AGG + chr3_4:17280476-17280495 Msa0493000:intron 30.0%
TTCATTCACTACACCATTTA+TGG + chr3_4:17280613-17280632 Msa0493000:intron 30.0%
TGCTGTTGTGAAAATATTGT+TGG - chr3_4:17280717-17280736 None:intergenic 30.0%
! ATCGACCCTTAAAATCATTT+TGG + chr3_4:17280741-17280760 Msa0493000:intron 30.0%
! TCGACCCTTAAAATCATTTT+GGG + chr3_4:17280742-17280761 Msa0493000:intron 30.0%
! TGTCCCCAAAATGATTTTAA+GGG - chr3_4:17280749-17280768 None:intergenic 30.0%
!!! GCGTCCATATGATAATTTTT+TGG + chr3_4:17280777-17280796 Msa0493000:intron 30.0%
GGCGTTTACAAAATAATGTA+AGG - chr3_4:17280888-17280907 None:intergenic 30.0%
CAAAGATGTAAGAAAGAGAA+GGG - chr3_4:17280917-17280936 None:intergenic 30.0%
ACAAAGATGTAAGAAAGAGA+AGG - chr3_4:17280918-17280937 None:intergenic 30.0%
!!! GGTGGATTTTTTATTTTTGG+TGG - chr3_4:17281026-17281045 None:intergenic 30.0%
TCACAAAGAAGATGAATTTG+TGG - chr3_4:17281047-17281066 None:intergenic 30.0%
GAATGTCAAATTAGGGATTT+GGG - chr3_4:17281142-17281161 None:intergenic 30.0%
TGAATGTCAAATTAGGGATT+TGG - chr3_4:17281143-17281162 None:intergenic 30.0%
GGAAGATGAATGTCAAATTA+GGG - chr3_4:17281149-17281168 None:intergenic 30.0%
TGGAAGATGAATGTCAAATT+AGG - chr3_4:17281150-17281169 None:intergenic 30.0%
!! TGATCTCATTTTTCTACGAT+TGG - chr3_4:17281223-17281242 None:intergenic 30.0%
GAAGTTGAAATTCCAGATTA+GGG - chr3_4:17281253-17281272 None:intergenic 30.0%
!!! TCTTGTTCTTGTTGATTTTG+GGG + chr3_4:17281367-17281386 Msa0493000:intron 30.0%
!!! GTATTCTTTTAGGATTCTGT+AGG + chr3_4:17281413-17281432 Msa0493000:intron 30.0%
!! TTTGGATTTTGAAGAGACTT+TGG + chr3_4:17281585-17281604 Msa0493000:intron 30.0%
!! TTGGATTTTGAAGAGACTTT+GGG + chr3_4:17281586-17281605 Msa0493000:intron 30.0%
! GTGCATACTACAATCATTTT+TGG + chr3_4:17282164-17282183 Msa0493000:intron 30.0%
TTTCAGATAATTGTCTGAGT+AGG - chr3_4:17282266-17282285 None:intergenic 30.0%
AAGAAATGTTGATCAACTAG+GGG + chr3_4:17282382-17282401 Msa0493000:intron 30.0%
CAATCAAATGCTATGAAACA+TGG - chr3_4:17282641-17282660 None:intergenic 30.0%
! AATTTTACACCGCTAATAAG+AGG + chr3_4:17282706-17282725 Msa0493000:intron 30.0%
TTCTCGTTATACATGTTTAG+GGG + chr3_4:17282734-17282753 Msa0493000:intron 30.0%
!! GGGTACTTTTTGATACTTTT+TGG + chr3_4:17282758-17282777 Msa0493000:intron 30.0%
!! CTTTTTGATACTTTTTGGTG+CGG + chr3_4:17282763-17282782 Msa0493000:intron 30.0%
! GTTTAATTACCAGTTGTTTC+GGG + chr3_4:17282879-17282898 Msa0493000:intron 30.0%
!!! GTTTTAGTTTTTAGTTCTGG+TGG + chr3_4:17283003-17283022 Msa0493000:intron 30.0%
!! ACAAGTTCTAAACCATCTTA+AGG - chr3_4:17283075-17283094 None:intergenic 30.0%
ATTTACAGAATAGTGCCTTT+AGG - chr3_4:17283219-17283238 None:intergenic 30.0%
! CTATACAAAATTTTGGGCAA+AGG - chr3_4:17283540-17283559 None:intergenic 30.0%
! CAACCTGCTATACAAAATTT+TGG - chr3_4:17283547-17283566 None:intergenic 30.0%
! AATAATTTGCAGCAATCTAG+CGG + chr3_4:17283712-17283731 Msa0493000:three_prime_UTR 30.0%
GTATCACTTCATCTAATCTT+CGG - chr3_4:17283837-17283856 None:intergenic 30.0%
! AAACATTTTTCATGTGTCGT+AGG + chr3_4:17284028-17284047 Msa0493000:intron 30.0%
TCAAACAAGAGCAAATACAT+GGG - chr3_4:17284206-17284225 None:intergenic 30.0%
ATCAAACAAGAGCAAATACA+TGG - chr3_4:17284207-17284226 None:intergenic 30.0%
! CGTTTTTGCTAATGTTAATG+TGG + chr3_4:17284259-17284278 Msa0493000:intron 30.0%
TTAAGTTAGACATTCCAACA+AGG - chr3_4:17284400-17284419 None:intergenic 30.0%
TCGGATAATACTAAAGAAAG+AGG - chr3_4:17284449-17284468 None:intergenic 30.0%
!!! AACCTTTTGAGATTGAACTA+TGG + chr3_4:17284517-17284536 Msa0493000:intron 30.0%
ATCCATAGTTCAATCTCAAA+AGG - chr3_4:17284522-17284541 None:intergenic 30.0%
GTTATAACAACTCTTGATTC+TGG - chr3_4:17284867-17284886 None:intergenic 30.0%
AGGTGTATATGATGAAAAGT+CGG - chr3_4:17284891-17284910 None:intergenic 30.0%
AATGAAAAATATGGAGGAGG+AGG - chr3_4:17275632-17275651 None:intergenic 35.0%
CAGAATGAAAAATATGGAGG+AGG - chr3_4:17275635-17275654 None:intergenic 35.0%
! CTCCTCCATATTTTTCATTC+TGG + chr3_4:17275633-17275652 Msa0493000:CDS 35.0%
ATGGGCCAGAATGAAAAATA+TGG - chr3_4:17275641-17275660 None:intergenic 35.0%
ATGTGAATATATGCCTTGAC+AGG + chr3_4:17275857-17275876 Msa0493000:intron 35.0%
! AAACCAAAGTATTCCTGTCA+AGG - chr3_4:17275873-17275892 None:intergenic 35.0%
! TAAAGATACAAGTTGACCGT+TGG + chr3_4:17276208-17276227 Msa0493000:intron 35.0%
ACGTTGGAACAATGCTAAAA+TGG + chr3_4:17276376-17276395 Msa0493000:intron 35.0%
! AGAGTGCTCGTTATTTGTAA+AGG + chr3_4:17276724-17276743 Msa0493000:intron 35.0%
!! CACTGCTCAAGCTTTTAATT+AGG - chr3_4:17276762-17276781 None:intergenic 35.0%
TTGAGCAGTGAAAATCTCAA+GGG + chr3_4:17276772-17276791 Msa0493000:intron 35.0%
TAGTTCAGCCTAAAACAACA+AGG - chr3_4:17276823-17276842 None:intergenic 35.0%
TTGTACATATTGTGTGTGAG+TGG - chr3_4:17277321-17277340 None:intergenic 35.0%
! GTAATTTTTGTCCCCTTTCA+GGG - chr3_4:17277409-17277428 None:intergenic 35.0%
! TGTAATTTTTGTCCCCTTTC+AGG - chr3_4:17277410-17277429 None:intergenic 35.0%
AAAGGGGACAAAAATTACAG+AGG + chr3_4:17277411-17277430 Msa0493000:intron 35.0%
!! TACACCACTTTGAAACTAGA+CGG - chr3_4:17277718-17277737 None:intergenic 35.0%
TTATCCATAACAACAGAGAG+AGG - chr3_4:17278564-17278583 None:intergenic 35.0%
GTTCATATATCCCACACATA+TGG - chr3_4:17278651-17278670 None:intergenic 35.0%
TTTAAGGAAGGTCCGTAAAT+TGG - chr3_4:17278697-17278716 None:intergenic 35.0%
AATGATCATGGTAGTAGAGT+TGG + chr3_4:17278820-17278839 Msa0493000:intron 35.0%
ATGATCATGGTAGTAGAGTT+GGG + chr3_4:17278821-17278840 Msa0493000:intron 35.0%
TGCATGTCACACAAAATGAA+AGG - chr3_4:17279138-17279157 None:intergenic 35.0%
! ATTTTGTGTGACATGCAGAA+TGG + chr3_4:17279141-17279160 Msa0493000:intron 35.0%
! TTTTGTGTGACATGCAGAAT+GGG + chr3_4:17279142-17279161 Msa0493000:intron 35.0%
AGAGAGATAGATGTGTAACT+TGG + chr3_4:17279321-17279340 Msa0493000:intron 35.0%
TGGATGATTCCTCTTCAATT+TGG - chr3_4:17279636-17279655 None:intergenic 35.0%
GGAATCATCCAATAGTTTCA+TGG + chr3_4:17279645-17279664 Msa0493000:intron 35.0%
CACTTTCTCCATGAAACTAT+TGG - chr3_4:17279656-17279675 None:intergenic 35.0%
! AGAGTGTTCTATTTGTGGAT+TGG - chr3_4:17280187-17280206 None:intergenic 35.0%
ATGTAAAGAATGTGTGAAGG+AGG + chr3_4:17280479-17280498 Msa0493000:intron 35.0%
! CGACCCTTAAAATCATTTTG+GGG + chr3_4:17280743-17280762 Msa0493000:intron 35.0%
! CTGTCCCCAAAATGATTTTA+AGG - chr3_4:17280750-17280769 None:intergenic 35.0%
! TAAGTTGCTGCATTGTCTTT+TGG + chr3_4:17280844-17280863 Msa0493000:intron 35.0%
TAAGAAAGAGAAGGGCAAAT+TGG - chr3_4:17280909-17280928 None:intergenic 35.0%
AGAGAGAACATTTGTAGATC+TGG - chr3_4:17280996-17281015 None:intergenic 35.0%
CAAAGAAGATGAATTTGTGG+TGG - chr3_4:17281044-17281063 None:intergenic 35.0%
GTTCTCATTTCTACTTGGAT+TGG - chr3_4:17281170-17281189 None:intergenic 35.0%
GGAAGTTGAAATTCCAGATT+AGG - chr3_4:17281254-17281273 None:intergenic 35.0%
ATTTCAACTTCCAATCGCAA+TGG + chr3_4:17281262-17281281 Msa0493000:intron 35.0%
TTTCAACTTCCAATCGCAAT+GGG + chr3_4:17281263-17281282 Msa0493000:intron 35.0%
! AGAAGAGTATGCTTTACATC+AGG + chr3_4:17281445-17281464 Msa0493000:CDS 35.0%
AGGATTATCGAGAACTCTAT+GGG + chr3_4:17281465-17281484 Msa0493000:CDS 35.0%
TTATTGGGTTTGATTGCCTA+AGG + chr3_4:17281553-17281572 Msa0493000:intron 35.0%
CCACAAACATTTGCGTAATT+AGG - chr3_4:17281618-17281637 None:intergenic 35.0%
CCTAATTACGCAAATGTTTG+TGG + chr3_4:17281615-17281634 Msa0493000:intron 35.0%
CTAACATTAACCCAAACTCA+TGG - chr3_4:17281856-17281875 None:intergenic 35.0%
ATTTGTACAACCCAAAGTTG+TGG + chr3_4:17282035-17282054 Msa0493000:intron 35.0%
TTTGTACAACCCAAAGTTGT+GGG + chr3_4:17282036-17282055 Msa0493000:intron 35.0%
ATAATTGTCTGAGTAGGTGT+CGG - chr3_4:17282260-17282279 None:intergenic 35.0%
ACTCTTGTATCTACGATATG+TGG - chr3_4:17282350-17282369 None:intergenic 35.0%
AGAAATGTTGATCAACTAGG+GGG + chr3_4:17282383-17282402 Msa0493000:intron 35.0%
CTGAGTTGCTAATTATTCTG+CGG + chr3_4:17282952-17282971 Msa0493000:intron 35.0%
TCTGCTACTGTCACAAAAAA+GGG - chr3_4:17283048-17283067 None:intergenic 35.0%
! AAGGCACTATTCTGTAAATG+TGG + chr3_4:17283220-17283239 Msa0493000:intron 35.0%
! TTCTTTTCAGTGCAGTGTTA+CGG - chr3_4:17283291-17283310 None:intergenic 35.0%
! AAATTTTGGGCAAAGGCAAA+AGG - chr3_4:17283533-17283552 None:intergenic 35.0%
! TGCCCAAAATTTTGTATAGC+AGG + chr3_4:17283541-17283560 Msa0493000:intron 35.0%
!!! AGGGAGGAAGTTTTTTTGAT+TGG + chr3_4:17283755-17283774 Msa0493000:three_prime_UTR 35.0%
!!! GGGAGGAAGTTTTTTTGATT+GGG + chr3_4:17283756-17283775 Msa0493000:three_prime_UTR 35.0%
!!! TTAGGGATTTTCTGAAGTTG+TGG + chr3_4:17283930-17283949 Msa0493000:intron 35.0%
TGTGTGACAAACTTAAACAG+TGG + chr3_4:17284051-17284070 Msa0493000:three_prime_UTR 35.0%
TTAGCACTACCTATCATTCT+TGG - chr3_4:17284127-17284146 None:intergenic 35.0%
TTTAGTTGGAATTGGATCCT+TGG + chr3_4:17284169-17284188 Msa0493000:intron 35.0%
TCCATTTATCGATGAGTCTA+AGG + chr3_4:17284290-17284309 Msa0493000:intron 35.0%
TCCTTAGACTCATCGATAAA+TGG - chr3_4:17284294-17284313 None:intergenic 35.0%
AAGTGATCAAAGCAGAGAAT+AGG - chr3_4:17284345-17284364 None:intergenic 35.0%
TGAGATTGAACTATGGATGA+AGG + chr3_4:17284524-17284543 Msa0493000:intron 35.0%
TTGCATCTAAGTGTAGTTGA+TGG + chr3_4:17284651-17284670 Msa0493000:intron 35.0%
!! AGTGTAGTTGATGGAATTGA+TGG + chr3_4:17284660-17284679 Msa0493000:intron 35.0%
ACCTTGATGGAATAGATGTA+TGG + chr3_4:17284738-17284757 Msa0493000:intron 35.0%
TCCATACATCTATTCCATCA+AGG - chr3_4:17284742-17284761 None:intergenic 35.0%
GATGCACACTAAACTTGAAA+AGG - chr3_4:17284911-17284930 None:intergenic 35.0%
ATTTCGAGATAGGCTAAGAA+TGG - chr3_4:17284937-17284956 None:intergenic 35.0%
!! ACTTTTGGGTATTTCGAGAT+AGG - chr3_4:17284947-17284966 None:intergenic 35.0%
! GCTCACATGATTACACTTTT+GGG - chr3_4:17284961-17284980 None:intergenic 35.0%
! TGCTCACATGATTACACTTT+TGG - chr3_4:17284962-17284981 None:intergenic 35.0%
TTTAATACTACTTCCGCTGT+CGG + chr3_4:17285009-17285028 Msa0493000:three_prime_UTR 35.0%
AACTAGTCATGGTAATTGAC+TGG + chr3_4:17285073-17285092 Msa0493000:three_prime_UTR 35.0%
ACTAGTCATGGTAATTGACT+GGG + chr3_4:17285074-17285093 Msa0493000:three_prime_UTR 35.0%
! AATCATCTCACTCCTTTTGT+GGG + chr3_4:17285151-17285170 Msa0493000:three_prime_UTR 35.0%
CTATAAAGTCAACCCACAAA+AGG - chr3_4:17285166-17285185 None:intergenic 35.0%
GGCCAGAATGAAAAATATGG+AGG - chr3_4:17275638-17275657 None:intergenic 40.0%
ATTGCATCCATTGTGAAGAG+TGG - chr3_4:17275668-17275687 None:intergenic 40.0%
ACTCTTCACAATGGATGCAA+TGG + chr3_4:17275667-17275686 Msa0493000:CDS 40.0%
TGGATGCAATGGATACACAA+AGG + chr3_4:17275678-17275697 Msa0493000:CDS 40.0%
ATGCCTTGACAGGAATACTT+TGG + chr3_4:17275867-17275886 Msa0493000:intron 40.0%
AGATGCAAAAAGCGGAAAAG+AGG + chr3_4:17275926-17275945 Msa0493000:intron 40.0%
! GGATTCAAGCTTTCAAGTCT+TGG + chr3_4:17275947-17275966 Msa0493000:intron 40.0%
TCATACGAATGCAAAGCCAA+CGG - chr3_4:17276255-17276274 None:intergenic 40.0%
ATCACCTCTCTTGAAACCTT+GGG - chr3_4:17276658-17276677 None:intergenic 40.0%
TATCACCTCTCTTGAAACCT+TGG - chr3_4:17276659-17276678 None:intergenic 40.0%
TCAAGAGAGGTGATATCTCT+TGG + chr3_4:17276664-17276683 Msa0493000:intron 40.0%
CTTGAGCAGTGAAAATCTCA+AGG + chr3_4:17276771-17276790 Msa0493000:intron 40.0%
TGAGCAGTGAAAATCTCAAG+GGG + chr3_4:17276773-17276792 Msa0493000:intron 40.0%
!!! AGACTAGGCCTTGTTGTTTT+AGG + chr3_4:17276812-17276831 Msa0493000:intron 40.0%
GATGAGAGAAAAGACACAAG+AGG - chr3_4:17276853-17276872 None:intergenic 40.0%
TGACTTCAAACACACAAGAG+GGG - chr3_4:17277029-17277048 None:intergenic 40.0%
GTGACTTCAAACACACAAGA+GGG - chr3_4:17277030-17277049 None:intergenic 40.0%
AGTGACTTCAAACACACAAG+AGG - chr3_4:17277031-17277050 None:intergenic 40.0%
AGGGAATAACTACCAGTTTG+AGG - chr3_4:17277070-17277089 None:intergenic 40.0%
!! TTCAGGGTTTTTGTTTGGGT+GGG - chr3_4:17277393-17277412 None:intergenic 40.0%
!! TTTCAGGGTTTTTGTTTGGG+TGG - chr3_4:17277394-17277413 None:intergenic 40.0%
ACCCAAACAAAAACCCTGAA+AGG + chr3_4:17277393-17277412 Msa0493000:intron 40.0%
!! CCCTTTCAGGGTTTTTGTTT+GGG - chr3_4:17277397-17277416 None:intergenic 40.0%
CCCAAACAAAAACCCTGAAA+GGG + chr3_4:17277394-17277413 Msa0493000:intron 40.0%
CCAAACAAAAACCCTGAAAG+GGG + chr3_4:17277395-17277414 Msa0493000:intron 40.0%
!! ACACCACTTTGAAACTAGAC+GGG - chr3_4:17277717-17277736 None:intergenic 40.0%
TTGTGGTTCGTGCATGTAAT+TGG + chr3_4:17277992-17278011 Msa0493000:intron 40.0%
! TCTGCTTTGTTAAGGTGATG+TGG - chr3_4:17278792-17278811 None:intergenic 40.0%
!!! GTGAGTTTTGGTGTTGGATT+TGG - chr3_4:17280018-17280037 None:intergenic 40.0%
AATCCAACACCAAAACTCAC+TGG + chr3_4:17280018-17280037 Msa0493000:intron 40.0%
!! AAACCAGTGAGTTTTGGTGT+TGG - chr3_4:17280024-17280043 None:intergenic 40.0%
! AGCTAGAAACCAGTGAGTTT+TGG - chr3_4:17280030-17280049 None:intergenic 40.0%
TTTGCAATGGGACAAGCTTT+AGG - chr3_4:17280162-17280181 None:intergenic 40.0%
!! TGTGGATTGGAGTTTGCAAT+GGG - chr3_4:17280174-17280193 None:intergenic 40.0%
!! TTGTGGATTGGAGTTTGCAA+TGG - chr3_4:17280175-17280194 None:intergenic 40.0%
! GTGTTGCTAGAGACCATAAA+TGG - chr3_4:17280629-17280648 None:intergenic 40.0%
TTTGTAGATCTGGACATCAG+AGG - chr3_4:17280986-17281005 None:intergenic 40.0%
AGATTGAATCAGCGAAACTG+AGG - chr3_4:17281077-17281096 None:intergenic 40.0%
GCTGTGTTCTCATTTCTACT+TGG - chr3_4:17281175-17281194 None:intergenic 40.0%
GAAGCTGAATCACGAGATTA+GGG - chr3_4:17281201-17281220 None:intergenic 40.0%
CAGGATTATCGAGAACTCTA+TGG + chr3_4:17281464-17281483 Msa0493000:CDS 40.0%
ATCCAAAGCAACACAACCTT+AGG - chr3_4:17281572-17281591 None:intergenic 40.0%
TTTGTGGTCGTGTGTTGAAT+TGG + chr3_4:17281631-17281650 Msa0493000:intron 40.0%
TTGTGGTCGTGTGTTGAATT+GGG + chr3_4:17281632-17281651 Msa0493000:intron 40.0%
! GTTGAATTGGGCCTTGTATT+TGG + chr3_4:17281644-17281663 Msa0493000:intron 40.0%
TTCCTTTCATGCCATGAGTT+TGG + chr3_4:17281842-17281861 Msa0493000:intron 40.0%
TCCTTTCATGCCATGAGTTT+GGG + chr3_4:17281843-17281862 Msa0493000:intron 40.0%
!!! ACATTAGCCTTTTAGGACAC+CGG - chr3_4:17282014-17282033 None:intergenic 40.0%
TTCTTTACTTCGACACTCCT+AGG + chr3_4:17282226-17282245 Msa0493000:intron 40.0%
TCGTTATACATGTTTAGGGG+TGG + chr3_4:17282737-17282756 Msa0493000:intron 40.0%
CGTTATACATGTTTAGGGGT+GGG + chr3_4:17282738-17282757 Msa0493000:intron 40.0%
! ATGTTGATCGCTGTGTTGTT+TGG + chr3_4:17282808-17282827 Msa0493000:intron 40.0%
!!! GTGTTGTTTGGTTTTGTCAG+TGG + chr3_4:17282820-17282839 Msa0493000:intron 40.0%
CCTAAAAAACCCGAAACAAC+TGG - chr3_4:17282891-17282910 None:intergenic 40.0%
!!! CCAGTTGTTTCGGGTTTTTT+AGG + chr3_4:17282888-17282907 Msa0493000:intron 40.0%
GTTCTGGTGGAGTTGTTATA+TGG + chr3_4:17283016-17283035 Msa0493000:intron 40.0%
GTCTGCTACTGTCACAAAAA+AGG - chr3_4:17283049-17283068 None:intergenic 40.0%
!!! TTTTTTTTGTGTGGGAGTCG+TGG + chr3_4:17283099-17283118 Msa0493000:intron 40.0%
!!! TTTTTTTGTGTGGGAGTCGT+GGG + chr3_4:17283100-17283119 Msa0493000:intron 40.0%
TAAGGTGAAACACGTGTGAA+AGG + chr3_4:17283735-17283754 Msa0493000:three_prime_UTR 40.0%
AAGGTGAAACACGTGTGAAA+GGG + chr3_4:17283736-17283755 Msa0493000:three_prime_UTR 40.0%
GACGTACTCGTTAAGGATTA+TGG + chr3_4:17283778-17283797 Msa0493000:three_prime_UTR 40.0%
GTCCTTCCAAGAATGATAGA+TGG + chr3_4:17284073-17284092 Msa0493000:three_prime_UTR 40.0%
CACCATCTATCATTCTTGGA+AGG - chr3_4:17284078-17284097 None:intergenic 40.0%
CTAGCACCATCTATCATTCT+TGG - chr3_4:17284082-17284101 None:intergenic 40.0%
TTGGTCCTTCCAAGAATGAT+AGG + chr3_4:17284115-17284134 Msa0493000:three_prime_UTR 40.0%
CACTACCTATCATTCTTGGA+AGG - chr3_4:17284123-17284142 None:intergenic 40.0%
CATGGGAAGAATAGTAACCA+AGG - chr3_4:17284189-17284208 None:intergenic 40.0%
CTTGCTTCAAACAACCTTGT+TGG + chr3_4:17284383-17284402 Msa0493000:intron 40.0%
!! CTCTTGATTCTGGACTAGTA+TGG - chr3_4:17284857-17284876 None:intergenic 40.0%
AATAAATTCTCGACCGACAG+CGG - chr3_4:17285025-17285044 None:intergenic 40.0%
! CAATCATCTCACTCCTTTTG+TGG + chr3_4:17285150-17285169 Msa0493000:three_prime_UTR 40.0%
ATTGTGAAGAGTGGTGGCAT+GGG - chr3_4:17275659-17275678 None:intergenic 45.0%
AAGGTCCATGTCTTTGCTTC+AGG + chr3_4:17275697-17275716 Msa0493000:CDS 45.0%
GAGTACCTGAAGCAAAGACA+TGG - chr3_4:17275705-17275724 None:intergenic 45.0%
ATCTCACTAATCTGCGTGTG+TGG + chr3_4:17275762-17275781 Msa0493000:intron 45.0%
! AATCTCAAGGGGCTTTTCCT+TGG + chr3_4:17276784-17276803 Msa0493000:intron 45.0%
! ATCTCAAGGGGCTTTTCCTT+GGG + chr3_4:17276785-17276804 Msa0493000:intron 45.0%
! TTTTCCTTGGGGACTAGACT+AGG + chr3_4:17276797-17276816 Msa0493000:intron 45.0%
ACTTCAAACACACAAGAGGG+GGG - chr3_4:17277027-17277046 None:intergenic 45.0%
GACTTCAAACACACAAGAGG+GGG - chr3_4:17277028-17277047 None:intergenic 45.0%
!! TCAGGGTTTTTGTTTGGGTG+GGG - chr3_4:17277392-17277411 None:intergenic 45.0%
! CCCCTTTCAGGGTTTTTGTT+TGG - chr3_4:17277398-17277417 None:intergenic 45.0%
! TTCCCCGTCTAGTTTCAAAG+TGG + chr3_4:17277711-17277730 Msa0493000:intron 45.0%
!! CACCACTTTGAAACTAGACG+GGG - chr3_4:17277716-17277735 None:intergenic 45.0%
TGCAATTTGTATGACCCGTG+CGG - chr3_4:17278471-17278490 None:intergenic 45.0%
CACACCTCTCTCTGTTGTTA+TGG + chr3_4:17278557-17278576 Msa0493000:intron 45.0%
TTGTTGCATCATTGATGGGG+AGG - chr3_4:17279710-17279729 None:intergenic 45.0%
!! AAGCTTTAGGTGGCTACATG+AGG - chr3_4:17280149-17280168 None:intergenic 45.0%
GTTCAACGTGAATGGAAGCA+GGG - chr3_4:17281120-17281139 None:intergenic 45.0%
! GGATTTGGGTTCAACGTGAA+TGG - chr3_4:17281128-17281147 None:intergenic 45.0%
GGAAGCTGAATCACGAGATT+AGG - chr3_4:17281202-17281221 None:intergenic 45.0%
GATCATGACGATCCCTAATC+TGG + chr3_4:17281238-17281257 Msa0493000:intron 45.0%
AGAGAAGAACCCATTGCGAT+TGG - chr3_4:17281275-17281294 None:intergenic 45.0%
!! TGCCTAAGGTTGTGTTGCTT+TGG + chr3_4:17281567-17281586 Msa0493000:intron 45.0%
ACCCAAACTCATGGCATGAA+AGG - chr3_4:17281847-17281866 None:intergenic 45.0%
TACGGTTGTCCCACAACTTT+GGG - chr3_4:17282048-17282067 None:intergenic 45.0%
ATACGGTTGTCCCACAACTT+TGG - chr3_4:17282049-17282068 None:intergenic 45.0%
ATGAAACATGGACTCCGACA+CGG - chr3_4:17282629-17282648 None:intergenic 45.0%
TGTCAGTGGTCATTTGCAGT+AGG + chr3_4:17282834-17282853 Msa0493000:intron 45.0%
CTGGTGGAGTTGTTATATGG+TGG + chr3_4:17283019-17283038 Msa0493000:intron 45.0%
GTAGCAGACTCTCCTTAAGA+TGG + chr3_4:17283060-17283079 Msa0493000:intron 45.0%
!!! TTTTTTGTGTGGGAGTCGTG+GGG + chr3_4:17283101-17283120 Msa0493000:intron 45.0%
CTTACAATGACACGGCCTAA+AGG + chr3_4:17283201-17283220 Msa0493000:intron 45.0%
AGTTCCATGAGACCATCCAT+TGG + chr3_4:17283326-17283345 Msa0493000:intron 45.0%
! TGTGCATTGACAGAGTGAAG+AGG - chr3_4:17283354-17283373 None:intergenic 45.0%
! CACTGGGCCTCACAATTTTT+GGG + chr3_4:17283617-17283636 Msa0493000:CDS 45.0%
! ACTGGGCCTCACAATTTTTG+GGG + chr3_4:17283618-17283637 Msa0493000:CDS 45.0%
TATGGGCCCCAAAAATTGTG+AGG - chr3_4:17283627-17283646 None:intergenic 45.0%
TTTGCAGCAATCTAGCGGTA+AGG + chr3_4:17283717-17283736 Msa0493000:three_prime_UTR 45.0%
TGATTGGGACGTACTCGTTA+AGG + chr3_4:17283771-17283790 Msa0493000:three_prime_UTR 45.0%
! GGAATTGATGGTCAACTTCG+TGG + chr3_4:17284672-17284691 Msa0493000:intron 45.0%
!! GACTTGTTGCTTCACCTTGA+TGG + chr3_4:17284725-17284744 Msa0493000:intron 45.0%
!!! ATTTTATTTTTATTTGTATT+AGG + chr3_4:17275970-17275989 Msa0493000:intron 5.0%
!! AATAAATATAAAAATAGATA+TGG - chr3_4:17276918-17276937 None:intergenic 5.0%
!!! TTATTATTTATTTTCTTTAA+AGG + chr3_4:17277201-17277220 Msa0493000:intron 5.0%
!!! AAATTTAATTTTTTTATGAA+TGG + chr3_4:17278341-17278360 Msa0493000:intron 5.0%
!! TATGTTAATTTATTTATATA+CGG - chr3_4:17282567-17282586 None:intergenic 5.0%
!! ATTATATTAATTAAATTTGT+AGG - chr3_4:17283508-17283527 None:intergenic 5.0%
CATTGTGAAGAGTGGTGGCA+TGG - chr3_4:17275660-17275679 None:intergenic 50.0%
CATGCCACCACTCTTCACAA+TGG + chr3_4:17275658-17275677 Msa0493000:CDS 50.0%
GCATCCATTGTGAAGAGTGG+TGG - chr3_4:17275665-17275684 None:intergenic 50.0%
CGTGTGTGGTGTGCAGTTTA+TGG + chr3_4:17275776-17275795 Msa0493000:intron 50.0%
TTGTATTGGGTGCGATCCCA+AGG + chr3_4:17276639-17276658 Msa0493000:intron 50.0%
CGATCCCAAGGTTTCAAGAG+AGG + chr3_4:17276651-17276670 Msa0493000:intron 50.0%
! TCTCAAGGGGCTTTTCCTTG+GGG + chr3_4:17276786-17276805 Msa0493000:intron 50.0%
!! GCAATGGGACAAGCTTTAGG+TGG - chr3_4:17280159-17280178 None:intergenic 50.0%
AATGTCCCCTCAGACACATC+TGG + chr3_4:17280812-17280831 Msa0493000:intron 50.0%
TTGTCGCCAGATGTGTCTGA+GGG - chr3_4:17280821-17280840 None:intergenic 50.0%
ATTGTCGCCAGATGTGTCTG+AGG - chr3_4:17280822-17280841 None:intergenic 50.0%
GAATGGAAGCAGGGAACAAG+AGG - chr3_4:17281111-17281130 None:intergenic 50.0%
GGTTCAACGTGAATGGAAGC+AGG - chr3_4:17281121-17281140 None:intergenic 50.0%
CTCCAAGACTAGGCATGTTG+CGG + chr3_4:17281922-17281941 Msa0493000:intron 50.0%
GACACTCGTATGACACGTGT+CGG + chr3_4:17281978-17281997 Msa0493000:intron 50.0%
ACCAAGACCGGTGTCCTAAA+AGG + chr3_4:17282004-17282023 Msa0493000:intron 50.0%
!! TCTGAGTAGGTGTCGGACAA+TGG - chr3_4:17282253-17282272 None:intergenic 50.0%
AGTGAAGAGGCTCCAATGGA+TGG - chr3_4:17283341-17283360 None:intergenic 50.0%
ACAGAGTGAAGAGGCTCCAA+TGG - chr3_4:17283345-17283364 None:intergenic 50.0%
GGTTGTGTGTATGAGCTGCA+AGG + chr3_4:17283562-17283581 Msa0493000:CDS 50.0%
CCAAAAATTGTGAGGCCCAG+TGG - chr3_4:17283619-17283638 None:intergenic 50.0%
! CCACTGGGCCTCACAATTTT+TGG + chr3_4:17283616-17283635 Msa0493000:CDS 50.0%
GTGAAACACGTGTGAAAGGG+AGG + chr3_4:17283739-17283758 Msa0493000:three_prime_UTR 50.0%
TCTAAGGACGTTCCAGTCGA+GGG + chr3_4:17284306-17284325 Msa0493000:intron 50.0%
GAGGAGGAGGATGTGACTCT+TGG - chr3_4:17275619-17275638 None:intergenic 55.0%
AAGGCCTAGTCTAGTCCCCA+AGG - chr3_4:17276804-17276823 None:intergenic 55.0%
TGTCGCCAGATGTGTCTGAG+GGG - chr3_4:17280820-17280839 None:intergenic 55.0%
GAGGACAGAGAAGACGCAAG+TGG - chr3_4:17280967-17280986 None:intergenic 55.0%
!! CGCAACATGCCTAGTCTTGG+AGG - chr3_4:17281924-17281943 None:intergenic 55.0%
CACCGCAACATGCCTAGTCT+TGG - chr3_4:17281927-17281946 None:intergenic 55.0%
ACTAGGCATGTTGCGGTGTC+TGG + chr3_4:17281929-17281948 Msa0493000:intron 55.0%
ACGTGTCGGACAACCAAGAC+CGG + chr3_4:17281992-17282011 Msa0493000:intron 55.0%
!!! GCCTTTTAGGACACCGGTCT+TGG - chr3_4:17282008-17282027 None:intergenic 55.0%
!! AGGTGTCGGACAATGGTCCT+AGG - chr3_4:17282246-17282265 None:intergenic 55.0%
GGCTCCAATGGATGGTCTCA+TGG - chr3_4:17283333-17283352 None:intergenic 55.0%
GTGTGTATGAGCTGCAAGGC+CGG + chr3_4:17283566-17283585 Msa0493000:CDS 55.0%
TGTGTATGAGCTGCAAGGCC+GGG + chr3_4:17283567-17283586 Msa0493000:CDS 55.0%
GTCTAAGGACGTTCCAGTCG+AGG + chr3_4:17284305-17284324 Msa0493000:intron 55.0%
CTAGAGCTGAAACCCTCGAC+TGG - chr3_4:17284321-17284340 None:intergenic 55.0%
GCACGGACACCTCCAAGACT+AGG + chr3_4:17281912-17281931 Msa0493000:intron 60.0%
! CGACGTGTCGATGTCGTGTC+AGG + chr3_4:17282600-17282619 Msa0493000:intron 60.0%
GTCGTGTCAGGTGTCCGTGT+CGG + chr3_4:17282612-17282631 Msa0493000:intron 60.0%
ATTGCACCCGTGCTGCCGCA+CGG + chr3_4:17278453-17278472 Msa0493000:intron 65.0%
TATGACCCGTGCGGCAGCAC+GGG - chr3_4:17278462-17278481 None:intergenic 65.0%
GTATGACCCGTGCGGCAGCA+CGG - chr3_4:17278463-17278482 None:intergenic 65.0%
TTGCGGTGTCTGGCACGCGT+CGG + chr3_4:17281939-17281958 Msa0493000:intron 65.0%
!! TGCCTCGACGGGCTATTGCC+CGG - chr3_4:17283588-17283607 None:intergenic 65.0%
GGCAATAGCCCGTCGAGGCA+GGG + chr3_4:17283588-17283607 Msa0493000:CDS 65.0%
TGGTCTAGCCCTGCCTCGAC+GGG - chr3_4:17283599-17283618 None:intergenic 65.0%
GTGGTCTAGCCCTGCCTCGA+CGG - chr3_4:17283600-17283619 None:intergenic 65.0%
TCGAGGCAGGGCTAGACCAC+TGG + chr3_4:17283600-17283619 Msa0493000:CDS 65.0%
CGAGGCAGGGCTAGACCACT+GGG + chr3_4:17283601-17283620 Msa0493000:CDS 65.0%
TTGCACCCGTGCTGCCGCAC+GGG + chr3_4:17278454-17278473 Msa0493000:intron 70.0%
GGGCAATAGCCCGTCGAGGC+AGG + chr3_4:17283587-17283606 Msa0493000:CDS 70.0%
GGCCGGGCAATAGCCCGTCG+AGG + chr3_4:17283583-17283602 Msa0493000:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 17275608 17285185 17275608 ID=Msa0493000;Name=Msa0493000
chr3_4 mRNA 17275608 17285185 17275608 ID=Msa0493000-mRNA-1;Parent=Msa0493000;Name=Msa0493000-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.6|0.66|0.66|0|0.16|6|550|117
chr3_4 exon 17275608 17275718 17275608 ID=Msa0493000-mRNA-1:exon:4864;Parent=Msa0493000-mRNA-1
chr3_4 exon 17277223 17277228 17277223 ID=Msa0493000-mRNA-1:exon:4865;Parent=Msa0493000-mRNA-1
chr3_4 exon 17281425 17281513 17281425 ID=Msa0493000-mRNA-1:exon:4866;Parent=Msa0493000-mRNA-1
chr3_4 exon 17283555 17283799 17283555 ID=Msa0493000-mRNA-1:exon:4867;Parent=Msa0493000-mRNA-1
chr3_4 exon 17284050 17284136 17284050 ID=Msa0493000-mRNA-1:exon:4868;Parent=Msa0493000-mRNA-1
chr3_4 exon 17284820 17285185 17284820 ID=Msa0493000-mRNA-1:exon:4869;Parent=Msa0493000-mRNA-1
chr3_4 CDS 17275608 17275718 17275608 ID=Msa0493000-mRNA-1:cds;Parent=Msa0493000-mRNA-1
chr3_4 CDS 17277223 17277228 17277223 ID=Msa0493000-mRNA-1:cds;Parent=Msa0493000-mRNA-1
chr3_4 CDS 17281425 17281513 17281425 ID=Msa0493000-mRNA-1:cds;Parent=Msa0493000-mRNA-1
chr3_4 CDS 17283555 17283702 17283555 ID=Msa0493000-mRNA-1:cds;Parent=Msa0493000-mRNA-1
chr3_4 three_prime_UTR 17283703 17283799 17283703 ID=Msa0493000-mRNA-1:three_prime_utr;Parent=Msa0493000-mRNA-1
chr3_4 three_prime_UTR 17284050 17284136 17284050 ID=Msa0493000-mRNA-1:three_prime_utr;Parent=Msa0493000-mRNA-1
chr3_4 three_prime_UTR 17284820 17285185 17284820 ID=Msa0493000-mRNA-1:three_prime_utr;Parent=Msa0493000-mRNA-1
Gene Sequence

>Msa0493000

ATGGTCAACCAAGAGTCACATCCTCCTCCTCCATATTTTTCATTCTGGCCCATGCCACCACTCTTCACAATGGATGCAATGGATACACAAAGGTCCATGTCTTTGCTTCAGGTTTATGATTCTGTAGGATTTGATGAAGAAGAGTATGCTTTACATCAGGATTATCGAGAACTCTATGGGTTCAATCTAATAGATTGTGAAGAAGGTATAGCAGGTTGTGTGTATGAGCTGCAAGGCCGGGCAATAGCCCGTCGAGGCAGGGCTAGACCACTGGGCCTCACAATTTTTGGGGCCCATAATATTTTTTTTCTTCATATAATGCAGAAAAAATACATTATATACCATCAAAGTTAA
Protein sequence

>Msa0493000

MVNQESHPPPPYFSFWPMPPLFTMDAMDTQRSMSLLQVYDSVGFDEEEYALHQDYRELYGFNLIDCEEGIAGCVYELQGRAIARRGRARPLGLTIFGAHNIFFLHIMQKKYIIYHQS*