Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040120 | sp|D7T737|MTND1_VITVI | 82.447 | 188 | 32 | 1 | 1 | 187 | 1 | 188 | 7.32e-114 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040120 | Msa0180520 | 0.832786 | 7.749991e-56 | -8.615850e-47 |
| Msa0040120 | Msa0317360 | 0.802863 | 4.585426e-49 | -8.615850e-47 |
| Msa0040120 | Msa0348760 | 0.801181 | 1.016355e-48 | -8.615850e-47 |
| Msa0040120 | Msa0443250 | 0.810697 | 1.013171e-50 | -8.615850e-47 |
| Msa0040120 | Msa0822800 | 0.811398 | 7.141092e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040120 | MtrunA17_Chr1g0204771 | 97.326 | 187 | 5 | 0 | 1 | 187 | 1 | 187 | 4.55e-136 | 377 |
| Msa0040120 | MtrunA17_Chr1g0204751 | 65.730 | 178 | 61 | 0 | 2 | 179 | 12 | 189 | 3.34e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040120 | AT5G43850.1 | 78.075 | 187 | 41 | 0 | 1 | 187 | 1 | 187 | 8.57e-110 | 311 |
| Msa0040120 | AT2G26400.3 | 65.000 | 180 | 63 | 0 | 2 | 181 | 27 | 206 | 8.05e-90 | 262 |
| Msa0040120 | AT2G26400.1 | 65.000 | 180 | 63 | 0 | 2 | 181 | 12 | 191 | 8.67e-90 | 261 |
| Msa0040120 | AT4G14710.5 | 63.842 | 177 | 64 | 0 | 2 | 178 | 14 | 190 | 1.25e-89 | 261 |
| Msa0040120 | AT4G14710.2 | 63.842 | 177 | 64 | 0 | 2 | 178 | 12 | 188 | 1.34e-89 | 261 |
| Msa0040120 | AT4G14710.1 | 63.842 | 177 | 64 | 0 | 2 | 178 | 12 | 188 | 1.34e-89 | 261 |
| Msa0040120 | AT4G14716.1 | 64.535 | 172 | 61 | 0 | 2 | 173 | 12 | 183 | 4.34e-88 | 257 |
| Msa0040120 | AT4G14710.3 | 63.483 | 178 | 64 | 1 | 2 | 178 | 12 | 189 | 8.43e-88 | 256 |
| Msa0040120 | AT2G26400.2 | 67.262 | 168 | 55 | 0 | 2 | 169 | 27 | 194 | 2.38e-87 | 256 |
| Msa0040120 | AT2G26400.4 | 67.262 | 168 | 55 | 0 | 2 | 169 | 12 | 179 | 2.66e-87 | 256 |
| Msa0040120 | AT4G14710.4 | 64.881 | 168 | 59 | 0 | 2 | 169 | 12 | 179 | 9.14e-87 | 253 |
| Msa0040120 | AT4G14710.6 | 64.327 | 171 | 61 | 0 | 8 | 178 | 1 | 171 | 2.59e-86 | 252 |
| Msa0040120 | AT4G14716.2 | 65.060 | 166 | 58 | 0 | 8 | 173 | 1 | 166 | 8.94e-85 | 248 |
Find 56 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGTTCCATAGATTTA+AGG | 0.127840 | 1_1:-70108855 | None:intergenic |
| GATTATAGGTTTGCTAAATT+TGG | 0.149851 | 1_1:+70109093 | Msa0040120:three_prime_UTR |
| GTGTGAACAATCATTCTTAT+AGG | 0.202497 | 1_1:+70109149 | Msa0040120:three_prime_UTR |
| TATATAGGCCTTCTCCTCTT+AGG | 0.228594 | 1_1:-70108945 | None:intergenic |
| TGATCATTCTCATAGTCATT+AGG | 0.279982 | 1_1:-70107578 | None:intergenic |
| TCATAATACTTAGAGATTAT+AGG | 0.283690 | 1_1:+70109079 | Msa0040120:intron |
| GATCATTCTCATAGTCATTA+GGG | 0.297534 | 1_1:-70107577 | None:intergenic |
| ATGGTTTGTAATGGAACTAT+TGG | 0.298889 | 1_1:+70108900 | Msa0040120:three_prime_UTR |
| GCAGTTAATGAGGTTGTTTA+TGG | 0.306900 | 1_1:+70108719 | Msa0040120:intron |
| CCCCAATGAATTTGTTTCCT+TGG | 0.318267 | 1_1:+70107430 | Msa0040120:CDS |
| ATGATTAATAACCTGCTAAT+TGG | 0.327623 | 1_1:-70107454 | None:intergenic |
| GTCCAAGGAAACAAATTCAT+TGG | 0.347689 | 1_1:-70107432 | None:intergenic |
| CATTAGAACCCTTAAATCTA+TGG | 0.350501 | 1_1:+70108846 | Msa0040120:exon |
| ATATAGTTCCATAGATTTAA+GGG | 0.355489 | 1_1:-70108854 | None:intergenic |
| TAGAATTGGGAGTCTTATAC+TGG | 0.362640 | 1_1:+70107546 | Msa0040120:intron |
| TGAAGAGATTCGTTACTGTT+TGG | 0.363134 | 1_1:+70108387 | Msa0040120:CDS |
| ACGATCGCTGGATTCGCATT+TGG | 0.379921 | 1_1:+70108443 | Msa0040120:CDS |
| TCCAAGGAAACAAATTCATT+GGG | 0.393021 | 1_1:-70107431 | None:intergenic |
| TAGGTTTGCTAAATTTGGTT+TGG | 0.408885 | 1_1:+70109098 | Msa0040120:three_prime_UTR |
| TACCATGTAATTGTATCCTC+TGG | 0.413679 | 1_1:-70107624 | None:intergenic |
| CTGGATTCGCATTTGGATCA+AGG | 0.420712 | 1_1:+70108450 | Msa0040120:CDS |
| TTGATGTATTCCTTTCTAGC+AGG | 0.427347 | 1_1:-70108786 | None:intergenic |
| CAGTTAATGAGGTTGTTTAT+GGG | 0.429331 | 1_1:+70108720 | Msa0040120:intron |
| ATTGTGACAGGCATGGTTCA+TGG | 0.434271 | 1_1:+70107367 | Msa0040120:intron |
| GGAAGATAACCCTGCTAGAA+AGG | 0.448092 | 1_1:+70108776 | Msa0040120:CDS |
| ATATAGGCCTTCTCCTCTTA+GGG | 0.460729 | 1_1:-70108944 | None:intergenic |
| AAGGGCTTGACTGAGAAAAC+TGG | 0.470773 | 1_1:+70108807 | Msa0040120:CDS |
| GTTTCCTTGGACCAATTAGC+AGG | 0.487915 | 1_1:+70107443 | Msa0040120:CDS |
| CTACACTGAGCAAATTCATC+AGG | 0.489887 | 1_1:+70108363 | Msa0040120:CDS |
| CGTTACTGTTTGGAGGGAAG+TGG | 0.493451 | 1_1:+70108397 | Msa0040120:CDS |
| TGATGTATTCCTTTCTAGCA+GGG | 0.496490 | 1_1:-70108785 | None:intergenic |
| AAAGTTACATGTATTTGCTT+AGG | 0.507085 | 1_1:-70109124 | None:intergenic |
| TAGCCATGGTGAGGAAGTCT+TGG | 0.507430 | 1_1:-70107407 | None:intergenic |
| AGAGATTCGTTACTGTTTGG+AGG | 0.508489 | 1_1:+70108390 | Msa0040120:CDS |
| TGCTAGAAAGGAATACATCA+AGG | 0.510214 | 1_1:+70108788 | Msa0040120:CDS |
| AAAATTGTTGCTCATAGTCA+TGG | 0.530477 | 1_1:+70107269 | Msa0040120:exon |
| ATTCGCATTTGGATCAAGGC+TGG | 0.542481 | 1_1:+70108454 | Msa0040120:CDS |
| AACCGATGGTAGATTCCTGC+TGG | 0.548643 | 1_1:-70108493 | None:intergenic |
| GGATTTACTTGATTTATGCC+CGG | 0.551505 | 1_1:+70108303 | Msa0040120:intron |
| CAAATTCATTGGGGTAGCCA+TGG | 0.553222 | 1_1:-70107421 | None:intergenic |
| GAGATTCGTTACTGTTTGGA+GGG | 0.561571 | 1_1:+70108391 | Msa0040120:CDS |
| TACCAGCAGGAATCTACCAT+CGG | 0.565483 | 1_1:+70108491 | Msa0040120:CDS |
| GAGGTTGTTTATGGGTGAGC+CGG | 0.570174 | 1_1:+70108728 | Msa0040120:CDS |
| CTAGCAGGGTTATCTTCCTG+TGG | 0.575444 | 1_1:-70108771 | None:intergenic |
| CGATTATATGCTGTCCACAC+CGG | 0.591841 | 1_1:-70108747 | None:intergenic |
| CGACACAAATAACTATGTGA+AGG | 0.598188 | 1_1:+70108522 | Msa0040120:CDS |
| ATAACCTGCTAATTGGTCCA+AGG | 0.599536 | 1_1:-70107447 | None:intergenic |
| TTGTGTCGAGAGTGAACCGA+TGG | 0.605251 | 1_1:-70108507 | None:intergenic |
| TGTTTATGGGTGAGCCGGTG+TGG | 0.615047 | 1_1:+70108733 | Msa0040120:CDS |
| AGCCAGAGGATACAATTACA+TGG | 0.637470 | 1_1:+70107622 | Msa0040120:CDS |
| GACAGCATATAATCGACCAC+AGG | 0.646228 | 1_1:+70108755 | Msa0040120:CDS |
| GCTAGAAAGGAATACATCAA+GGG | 0.647373 | 1_1:+70108789 | Msa0040120:CDS |
| GGGTTCTAATGAGCTGCAAG+TGG | 0.648299 | 1_1:-70108834 | None:intergenic |
| TCATTGGGGTAGCCATGGTG+AGG | 0.672207 | 1_1:-70107416 | None:intergenic |
| GATCCAAGACTTCCTCACCA+TGG | 0.679886 | 1_1:+70107404 | Msa0040120:CDS |
| CCAAGGAAACAAATTCATTG+GGG | 0.686962 | 1_1:-70107430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAAGATTAATTCATA+AGG | - | chr1_1:70107322-70107341 | None:intergenic | 10.0% |
| !! | ATTATCTAATATATTGTAAA+CGG | + | chr1_1:70107820-70107839 | Msa0040120:intron | 10.0% |
| !!! | TTTTAGACATTATAATTTTA+TGG | + | chr1_1:70108881-70108900 | Msa0040120:three_prime_UTR | 10.0% |
| !! | TATATTAAGATTAATTCATA+AGG | - | chr1_1:70107322-70107341 | None:intergenic | 10.0% |
| !! | ATTATCTAATATATTGTAAA+CGG | + | chr1_1:70107820-70107839 | Msa0040120:intron | 10.0% |
| !!! | TTTTAGACATTATAATTTTA+TGG | + | chr1_1:70108881-70108900 | Msa0040120:three_prime_UTR | 10.0% |
| !! | TAATAATTAAAAATTGTGAC+AGG | + | chr1_1:70107355-70107374 | Msa0040120:intron | 15.0% |
| !!! | AATTGTAATTTTTGTAGAAT+TGG | + | chr1_1:70107532-70107551 | Msa0040120:intron | 15.0% |
| !!! | ATTGTAATTTTTGTAGAATT+GGG | + | chr1_1:70107533-70107552 | Msa0040120:intron | 15.0% |
| !! | AATTAGTTGAAAATAACTTA+CGG | + | chr1_1:70108034-70108053 | Msa0040120:intron | 15.0% |
| !!! | TATAATTTTATGGTTTGTAA+TGG | + | chr1_1:70108891-70108910 | Msa0040120:three_prime_UTR | 15.0% |
| !! | TAATAATTAAAAATTGTGAC+AGG | + | chr1_1:70107355-70107374 | Msa0040120:intron | 15.0% |
| !!! | AATTGTAATTTTTGTAGAAT+TGG | + | chr1_1:70107532-70107551 | Msa0040120:intron | 15.0% |
| !!! | ATTGTAATTTTTGTAGAATT+GGG | + | chr1_1:70107533-70107552 | Msa0040120:intron | 15.0% |
| !! | AATTAGTTGAAAATAACTTA+CGG | + | chr1_1:70108034-70108053 | Msa0040120:intron | 15.0% |
| !!! | TATAATTTTATGGTTTGTAA+TGG | + | chr1_1:70108891-70108910 | Msa0040120:three_prime_UTR | 15.0% |
| !! | ACATGTTATAAGATTAAAAC+AGG | + | chr1_1:70107782-70107801 | Msa0040120:intron | 20.0% |
| !! | TTACATCAACAAAAATTTGA+AGG | - | chr1_1:70107846-70107865 | None:intergenic | 20.0% |
| !! | TTTGTTGATGTAAATTTCTT+AGG | + | chr1_1:70107853-70107872 | Msa0040120:intron | 20.0% |
| !!! | TCATAATTTTCAACTTTTTC+CGG | - | chr1_1:70108325-70108344 | None:intergenic | 20.0% |
| !! | ATATAGTTCCATAGATTTAA+GGG | - | chr1_1:70108857-70108876 | None:intergenic | 20.0% |
| !! | AATATAGTTCCATAGATTTA+AGG | - | chr1_1:70108858-70108877 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTCATAGATATAT+AGG | - | chr1_1:70108963-70108982 | None:intergenic | 20.0% |
| !! | TCATAATACTTAGAGATTAT+AGG | + | chr1_1:70109079-70109098 | Msa0040120:intron | 20.0% |
| !! | ACATGTTATAAGATTAAAAC+AGG | + | chr1_1:70107782-70107801 | Msa0040120:intron | 20.0% |
| !! | TTACATCAACAAAAATTTGA+AGG | - | chr1_1:70107846-70107865 | None:intergenic | 20.0% |
| !! | TTTGTTGATGTAAATTTCTT+AGG | + | chr1_1:70107853-70107872 | Msa0040120:intron | 20.0% |
| !!! | TCATAATTTTCAACTTTTTC+CGG | - | chr1_1:70108325-70108344 | None:intergenic | 20.0% |
| !! | ATATAGTTCCATAGATTTAA+GGG | - | chr1_1:70108857-70108876 | None:intergenic | 20.0% |
| !! | AATATAGTTCCATAGATTTA+AGG | - | chr1_1:70108858-70108877 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTCATAGATATAT+AGG | - | chr1_1:70108963-70108982 | None:intergenic | 20.0% |
| !! | TCATAATACTTAGAGATTAT+AGG | + | chr1_1:70109079-70109098 | Msa0040120:intron | 20.0% |
| ! | ATGATTAATAACCTGCTAAT+TGG | - | chr1_1:70107457-70107476 | None:intergenic | 25.0% |
| ! | TTTATTGTGACACAAGTTTA+AGG | + | chr1_1:70107506-70107525 | Msa0040120:intron | 25.0% |
| !! | AAGTTATCTTTGAGAGTTTA+TGG | + | chr1_1:70108010-70108029 | Msa0040120:intron | 25.0% |
| ! | ATAGCTTATGAAAACAACTT+TGG | - | chr1_1:70108065-70108084 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGTACTAGTTGA+AGG | + | chr1_1:70108206-70108225 | Msa0040120:intron | 25.0% |
| !!! | TTTTGATTGTACTAGTTGAA+GGG | + | chr1_1:70108207-70108226 | Msa0040120:intron | 25.0% |
| ! | GTACTATTTGAATATGTTGT+AGG | + | chr1_1:70108282-70108301 | Msa0040120:intron | 25.0% |
| !!! | CATAATTTTCAACTTTTTCC+GGG | - | chr1_1:70108324-70108343 | None:intergenic | 25.0% |
| ! | TTGATCAAGAAATTTATAGG+TGG | - | chr1_1:70108552-70108571 | None:intergenic | 25.0% |
| ! | ACCTATAAATTTCTTGATCA+AGG | + | chr1_1:70108551-70108570 | Msa0040120:intron | 25.0% |
| ! | TTGAAATTGATCAAGATTCA+AGG | + | chr1_1:70108637-70108656 | Msa0040120:intron | 25.0% |
| !!! | GATTATAGGTTTGCTAAATT+TGG | + | chr1_1:70109093-70109112 | Msa0040120:three_prime_UTR | 25.0% |
| ! | AAAGTTACATGTATTTGCTT+AGG | - | chr1_1:70109127-70109146 | None:intergenic | 25.0% |
| !! | TCATTCTTATAGGTTTTCTT+AGG | + | chr1_1:70109159-70109178 | Msa0040120:three_prime_UTR | 25.0% |
| ! | ATGATTAATAACCTGCTAAT+TGG | - | chr1_1:70107457-70107476 | None:intergenic | 25.0% |
| ! | TTTATTGTGACACAAGTTTA+AGG | + | chr1_1:70107506-70107525 | Msa0040120:intron | 25.0% |
| !! | AAGTTATCTTTGAGAGTTTA+TGG | + | chr1_1:70108010-70108029 | Msa0040120:intron | 25.0% |
| ! | ATAGCTTATGAAAACAACTT+TGG | - | chr1_1:70108065-70108084 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGTACTAGTTGA+AGG | + | chr1_1:70108206-70108225 | Msa0040120:intron | 25.0% |
| !!! | TTTTGATTGTACTAGTTGAA+GGG | + | chr1_1:70108207-70108226 | Msa0040120:intron | 25.0% |
| ! | GTACTATTTGAATATGTTGT+AGG | + | chr1_1:70108282-70108301 | Msa0040120:intron | 25.0% |
| !!! | CATAATTTTCAACTTTTTCC+GGG | - | chr1_1:70108324-70108343 | None:intergenic | 25.0% |
| ! | TTGATCAAGAAATTTATAGG+TGG | - | chr1_1:70108552-70108571 | None:intergenic | 25.0% |
| ! | ACCTATAAATTTCTTGATCA+AGG | + | chr1_1:70108551-70108570 | Msa0040120:intron | 25.0% |
| ! | TTGAAATTGATCAAGATTCA+AGG | + | chr1_1:70108637-70108656 | Msa0040120:intron | 25.0% |
| !!! | GATTATAGGTTTGCTAAATT+TGG | + | chr1_1:70109093-70109112 | Msa0040120:three_prime_UTR | 25.0% |
| ! | AAAGTTACATGTATTTGCTT+AGG | - | chr1_1:70109127-70109146 | None:intergenic | 25.0% |
| AAAATTGTTGCTCATAGTCA+TGG | + | chr1_1:70107269-70107288 | Msa0040120:exon | 30.0% | |
| ATTAAAAATTGTGACAGGCA+TGG | + | chr1_1:70107360-70107379 | Msa0040120:intron | 30.0% | |
| TCCAAGGAAACAAATTCATT+GGG | - | chr1_1:70107434-70107453 | None:intergenic | 30.0% | |
| GATCATTCTCATAGTCATTA+GGG | - | chr1_1:70107580-70107599 | None:intergenic | 30.0% | |
| TGATCATTCTCATAGTCATT+AGG | - | chr1_1:70107581-70107600 | None:intergenic | 30.0% | |
| ! | TTTCTAGTGATACCATTACA+TGG | + | chr1_1:70107709-70107728 | Msa0040120:intron | 30.0% |
| CTTTCAATCTTACCATGTAA+TGG | - | chr1_1:70107724-70107743 | None:intergenic | 30.0% | |
| TTACATGGTAAGATTGAAAG+TGG | + | chr1_1:70107724-70107743 | Msa0040120:intron | 30.0% | |
| !!! | TGAAAGTGGATTTTTTCTTG+TGG | + | chr1_1:70107738-70107757 | Msa0040120:intron | 30.0% |
| !!! | GAAAGTGGATTTTTTCTTGT+GGG | + | chr1_1:70107739-70107758 | Msa0040120:intron | 30.0% |
| ATAAGTTGTTTACCTAACAG+TGG | - | chr1_1:70107907-70107926 | None:intergenic | 30.0% | |
| GAGCTCAAATAAGTCAATTT+AGG | + | chr1_1:70108120-70108139 | Msa0040120:intron | 30.0% | |
| GTACAATCAAAATGTTCAAC+AGG | - | chr1_1:70108199-70108218 | None:intergenic | 30.0% | |
| AAGGGAAATTTCAAATGTTC+TGG | + | chr1_1:70108225-70108244 | Msa0040120:intron | 30.0% | |
| AGGGAAATTTCAAATGTTCT+GGG | + | chr1_1:70108226-70108245 | Msa0040120:intron | 30.0% | |
| GCCTTGATCAAGAAATTTAT+AGG | - | chr1_1:70108555-70108574 | None:intergenic | 30.0% | |
| !! | TTGATCAAGGCTTCATTTTT+GGG | + | chr1_1:70108564-70108583 | Msa0040120:intron | 30.0% |
| ! | CAAGATTCAAGGTGTTATAT+TGG | + | chr1_1:70108648-70108667 | Msa0040120:intron | 30.0% |
| TTGTTATATGCATACGTATG+TGG | + | chr1_1:70108690-70108709 | Msa0040120:intron | 30.0% | |
| CAGTTAATGAGGTTGTTTAT+GGG | + | chr1_1:70108720-70108739 | Msa0040120:intron | 30.0% | |
| CATTAGAACCCTTAAATCTA+TGG | + | chr1_1:70108846-70108865 | Msa0040120:exon | 30.0% | |
| ! | ATGGTTTGTAATGGAACTAT+TGG | + | chr1_1:70108900-70108919 | Msa0040120:three_prime_UTR | 30.0% |
| ! | TGTATAGATTTTACCCTAAG+AGG | + | chr1_1:70108931-70108950 | Msa0040120:three_prime_UTR | 30.0% |
| !! | AAGTCATAATGAGCTGTTTT+AGG | - | chr1_1:70108979-70108998 | None:intergenic | 30.0% |
| !! | TAGGTTTGCTAAATTTGGTT+TGG | + | chr1_1:70109098-70109117 | Msa0040120:three_prime_UTR | 30.0% |
| GTGTGAACAATCATTCTTAT+AGG | + | chr1_1:70109149-70109168 | Msa0040120:three_prime_UTR | 30.0% | |
| AAAATTGTTGCTCATAGTCA+TGG | + | chr1_1:70107269-70107288 | Msa0040120:exon | 30.0% | |
| ATTAAAAATTGTGACAGGCA+TGG | + | chr1_1:70107360-70107379 | Msa0040120:intron | 30.0% | |
| TCCAAGGAAACAAATTCATT+GGG | - | chr1_1:70107434-70107453 | None:intergenic | 30.0% | |
| GATCATTCTCATAGTCATTA+GGG | - | chr1_1:70107580-70107599 | None:intergenic | 30.0% | |
| TGATCATTCTCATAGTCATT+AGG | - | chr1_1:70107581-70107600 | None:intergenic | 30.0% | |
| ! | TTTCTAGTGATACCATTACA+TGG | + | chr1_1:70107709-70107728 | Msa0040120:intron | 30.0% |
| CTTTCAATCTTACCATGTAA+TGG | - | chr1_1:70107724-70107743 | None:intergenic | 30.0% | |
| TTACATGGTAAGATTGAAAG+TGG | + | chr1_1:70107724-70107743 | Msa0040120:intron | 30.0% | |
| !!! | TGAAAGTGGATTTTTTCTTG+TGG | + | chr1_1:70107738-70107757 | Msa0040120:intron | 30.0% |
| !!! | GAAAGTGGATTTTTTCTTGT+GGG | + | chr1_1:70107739-70107758 | Msa0040120:intron | 30.0% |
| ATAAGTTGTTTACCTAACAG+TGG | - | chr1_1:70107907-70107926 | None:intergenic | 30.0% | |
| GAGCTCAAATAAGTCAATTT+AGG | + | chr1_1:70108120-70108139 | Msa0040120:intron | 30.0% | |
| GTACAATCAAAATGTTCAAC+AGG | - | chr1_1:70108199-70108218 | None:intergenic | 30.0% | |
| AAGGGAAATTTCAAATGTTC+TGG | + | chr1_1:70108225-70108244 | Msa0040120:intron | 30.0% | |
| AGGGAAATTTCAAATGTTCT+GGG | + | chr1_1:70108226-70108245 | Msa0040120:intron | 30.0% | |
| GCCTTGATCAAGAAATTTAT+AGG | - | chr1_1:70108555-70108574 | None:intergenic | 30.0% | |
| !! | TTGATCAAGGCTTCATTTTT+GGG | + | chr1_1:70108564-70108583 | Msa0040120:intron | 30.0% |
| ! | CAAGATTCAAGGTGTTATAT+TGG | + | chr1_1:70108648-70108667 | Msa0040120:intron | 30.0% |
| TTGTTATATGCATACGTATG+TGG | + | chr1_1:70108690-70108709 | Msa0040120:intron | 30.0% | |
| CAGTTAATGAGGTTGTTTAT+GGG | + | chr1_1:70108720-70108739 | Msa0040120:intron | 30.0% | |
| CATTAGAACCCTTAAATCTA+TGG | + | chr1_1:70108846-70108865 | Msa0040120:exon | 30.0% | |
| ! | ATGGTTTGTAATGGAACTAT+TGG | + | chr1_1:70108900-70108919 | Msa0040120:three_prime_UTR | 30.0% |
| ! | TGTATAGATTTTACCCTAAG+AGG | + | chr1_1:70108931-70108950 | Msa0040120:three_prime_UTR | 30.0% |
| !! | AAGTCATAATGAGCTGTTTT+AGG | - | chr1_1:70108979-70108998 | None:intergenic | 30.0% |
| !! | TAGGTTTGCTAAATTTGGTT+TGG | + | chr1_1:70109098-70109117 | Msa0040120:three_prime_UTR | 30.0% |
| GTGTGAACAATCATTCTTAT+AGG | + | chr1_1:70109149-70109168 | Msa0040120:three_prime_UTR | 30.0% | |
| ! | GATTTTTGTGTGTGTAGGAA+AGG | + | chr1_1:70107205-70107224 | Msa0040120:intron | 35.0% |
| CCAAGGAAACAAATTCATTG+GGG | - | chr1_1:70107433-70107452 | None:intergenic | 35.0% | |
| GTCCAAGGAAACAAATTCAT+TGG | - | chr1_1:70107435-70107454 | None:intergenic | 35.0% | |
| ! | TAGAATTGGGAGTCTTATAC+TGG | + | chr1_1:70107546-70107565 | Msa0040120:intron | 35.0% |
| AAAAACATTAGAGAAGCCAG+AGG | + | chr1_1:70107608-70107627 | Msa0040120:CDS | 35.0% | |
| TACCATGTAATTGTATCCTC+TGG | - | chr1_1:70107627-70107646 | None:intergenic | 35.0% | |
| ACTTATTTGAGCTCATCTAC+CGG | - | chr1_1:70108114-70108133 | None:intergenic | 35.0% | |
| GGATTTACTTGATTTATGCC+CGG | + | chr1_1:70108303-70108322 | Msa0040120:intron | 35.0% | |
| TGAAGAGATTCGTTACTGTT+TGG | + | chr1_1:70108387-70108406 | Msa0040120:CDS | 35.0% | |
| ! | GATCTTATCATTTTACCAGC+AGG | + | chr1_1:70108478-70108497 | Msa0040120:CDS | 35.0% |
| CGACACAAATAACTATGTGA+AGG | + | chr1_1:70108522-70108541 | Msa0040120:CDS | 35.0% | |
| ! | CTTGATCAAGGCTTCATTTT+TGG | + | chr1_1:70108563-70108582 | Msa0040120:intron | 35.0% |
| GCAGTTAATGAGGTTGTTTA+TGG | + | chr1_1:70108719-70108738 | Msa0040120:intron | 35.0% | |
| ! | TGATGTATTCCTTTCTAGCA+GGG | - | chr1_1:70108788-70108807 | None:intergenic | 35.0% |
| ! | TTGATGTATTCCTTTCTAGC+AGG | - | chr1_1:70108789-70108808 | None:intergenic | 35.0% |
| TGCTAGAAAGGAATACATCA+AGG | + | chr1_1:70108788-70108807 | Msa0040120:CDS | 35.0% | |
| GCTAGAAAGGAATACATCAA+GGG | + | chr1_1:70108789-70108808 | Msa0040120:CDS | 35.0% | |
| ! | GATTTTTGTGTGTGTAGGAA+AGG | + | chr1_1:70107205-70107224 | Msa0040120:intron | 35.0% |
| CCAAGGAAACAAATTCATTG+GGG | - | chr1_1:70107433-70107452 | None:intergenic | 35.0% | |
| GTCCAAGGAAACAAATTCAT+TGG | - | chr1_1:70107435-70107454 | None:intergenic | 35.0% | |
| ! | TAGAATTGGGAGTCTTATAC+TGG | + | chr1_1:70107546-70107565 | Msa0040120:intron | 35.0% |
| AAAAACATTAGAGAAGCCAG+AGG | + | chr1_1:70107608-70107627 | Msa0040120:CDS | 35.0% | |
| TACCATGTAATTGTATCCTC+TGG | - | chr1_1:70107627-70107646 | None:intergenic | 35.0% | |
| ACTTATTTGAGCTCATCTAC+CGG | - | chr1_1:70108114-70108133 | None:intergenic | 35.0% | |
| GGATTTACTTGATTTATGCC+CGG | + | chr1_1:70108303-70108322 | Msa0040120:intron | 35.0% | |
| TGAAGAGATTCGTTACTGTT+TGG | + | chr1_1:70108387-70108406 | Msa0040120:CDS | 35.0% | |
| ! | GATCTTATCATTTTACCAGC+AGG | + | chr1_1:70108478-70108497 | Msa0040120:CDS | 35.0% |
| CGACACAAATAACTATGTGA+AGG | + | chr1_1:70108522-70108541 | Msa0040120:CDS | 35.0% | |
| ! | CTTGATCAAGGCTTCATTTT+TGG | + | chr1_1:70108563-70108582 | Msa0040120:intron | 35.0% |
| GCAGTTAATGAGGTTGTTTA+TGG | + | chr1_1:70108719-70108738 | Msa0040120:intron | 35.0% | |
| ! | TGATGTATTCCTTTCTAGCA+GGG | - | chr1_1:70108788-70108807 | None:intergenic | 35.0% |
| ! | TTGATGTATTCCTTTCTAGC+AGG | - | chr1_1:70108789-70108808 | None:intergenic | 35.0% |
| TGCTAGAAAGGAATACATCA+AGG | + | chr1_1:70108788-70108807 | Msa0040120:CDS | 35.0% | |
| GCTAGAAAGGAATACATCAA+GGG | + | chr1_1:70108789-70108808 | Msa0040120:CDS | 35.0% | |
| ! | CAGCAGATTTTTGTGTGTGT+AGG | + | chr1_1:70107200-70107219 | Msa0040120:intron | 40.0% |
| ! | CCCCAATGAATTTGTTTCCT+TGG | + | chr1_1:70107430-70107449 | Msa0040120:CDS | 40.0% |
| ATAACCTGCTAATTGGTCCA+AGG | - | chr1_1:70107450-70107469 | None:intergenic | 40.0% | |
| AGCCAGAGGATACAATTACA+TGG | + | chr1_1:70107622-70107641 | Msa0040120:CDS | 40.0% | |
| AGTCTCGCAAATACTTATGC+CGG | + | chr1_1:70108092-70108111 | Msa0040120:intron | 40.0% | |
| CTACACTGAGCAAATTCATC+AGG | + | chr1_1:70108363-70108382 | Msa0040120:CDS | 40.0% | |
| AGAGATTCGTTACTGTTTGG+AGG | + | chr1_1:70108390-70108409 | Msa0040120:CDS | 40.0% | |
| GAGATTCGTTACTGTTTGGA+GGG | + | chr1_1:70108391-70108410 | Msa0040120:CDS | 40.0% | |
| !!! | AAGGCTTCATTTTTGGGATG+TGG | + | chr1_1:70108570-70108589 | Msa0040120:intron | 40.0% |
| !!! | GTGGTTTTGTGCAGTTAATG+AGG | + | chr1_1:70108709-70108728 | Msa0040120:intron | 40.0% |
| ! | GATTTTACCCTAAGAGGAGA+AGG | + | chr1_1:70108937-70108956 | Msa0040120:three_prime_UTR | 40.0% |
| ATATAGGCCTTCTCCTCTTA+GGG | - | chr1_1:70108947-70108966 | None:intergenic | 40.0% | |
| TATATAGGCCTTCTCCTCTT+AGG | - | chr1_1:70108948-70108967 | None:intergenic | 40.0% | |
| ! | CAGCAGATTTTTGTGTGTGT+AGG | + | chr1_1:70107200-70107219 | Msa0040120:intron | 40.0% |
| ! | CCCCAATGAATTTGTTTCCT+TGG | + | chr1_1:70107430-70107449 | Msa0040120:CDS | 40.0% |
| ATAACCTGCTAATTGGTCCA+AGG | - | chr1_1:70107450-70107469 | None:intergenic | 40.0% | |
| AGCCAGAGGATACAATTACA+TGG | + | chr1_1:70107622-70107641 | Msa0040120:CDS | 40.0% | |
| AGTCTCGCAAATACTTATGC+CGG | + | chr1_1:70108092-70108111 | Msa0040120:intron | 40.0% | |
| CTACACTGAGCAAATTCATC+AGG | + | chr1_1:70108363-70108382 | Msa0040120:CDS | 40.0% | |
| AGAGATTCGTTACTGTTTGG+AGG | + | chr1_1:70108390-70108409 | Msa0040120:CDS | 40.0% | |
| GAGATTCGTTACTGTTTGGA+GGG | + | chr1_1:70108391-70108410 | Msa0040120:CDS | 40.0% | |
| !!! | AAGGCTTCATTTTTGGGATG+TGG | + | chr1_1:70108570-70108589 | Msa0040120:intron | 40.0% |
| !!! | GTGGTTTTGTGCAGTTAATG+AGG | + | chr1_1:70108709-70108728 | Msa0040120:intron | 40.0% |
| ! | GATTTTACCCTAAGAGGAGA+AGG | + | chr1_1:70108937-70108956 | Msa0040120:three_prime_UTR | 40.0% |
| ATATAGGCCTTCTCCTCTTA+GGG | - | chr1_1:70108947-70108966 | None:intergenic | 40.0% | |
| TATATAGGCCTTCTCCTCTT+AGG | - | chr1_1:70108948-70108967 | None:intergenic | 40.0% | |
| ATTGTGACAGGCATGGTTCA+TGG | + | chr1_1:70107367-70107386 | Msa0040120:intron | 45.0% | |
| CAAATTCATTGGGGTAGCCA+TGG | - | chr1_1:70107424-70107443 | None:intergenic | 45.0% | |
| GTTTCCTTGGACCAATTAGC+AGG | + | chr1_1:70107443-70107462 | Msa0040120:CDS | 45.0% | |
| TTCGAGACAAAAACGATCGC+TGG | + | chr1_1:70108431-70108450 | Msa0040120:CDS | 45.0% | |
| CTGGATTCGCATTTGGATCA+AGG | + | chr1_1:70108450-70108469 | Msa0040120:CDS | 45.0% | |
| ATTCGCATTTGGATCAAGGC+TGG | + | chr1_1:70108454-70108473 | Msa0040120:CDS | 45.0% | |
| TACCAGCAGGAATCTACCAT+CGG | + | chr1_1:70108491-70108510 | Msa0040120:CDS | 45.0% | |
| CGATTATATGCTGTCCACAC+CGG | - | chr1_1:70108750-70108769 | None:intergenic | 45.0% | |
| GACAGCATATAATCGACCAC+AGG | + | chr1_1:70108755-70108774 | Msa0040120:CDS | 45.0% | |
| GGAAGATAACCCTGCTAGAA+AGG | + | chr1_1:70108776-70108795 | Msa0040120:CDS | 45.0% | |
| AAGGGCTTGACTGAGAAAAC+TGG | + | chr1_1:70108807-70108826 | Msa0040120:CDS | 45.0% | |
| ATTGTGACAGGCATGGTTCA+TGG | + | chr1_1:70107367-70107386 | Msa0040120:intron | 45.0% | |
| CAAATTCATTGGGGTAGCCA+TGG | - | chr1_1:70107424-70107443 | None:intergenic | 45.0% | |
| GTTTCCTTGGACCAATTAGC+AGG | + | chr1_1:70107443-70107462 | Msa0040120:CDS | 45.0% | |
| TTCGAGACAAAAACGATCGC+TGG | + | chr1_1:70108431-70108450 | Msa0040120:CDS | 45.0% | |
| CTGGATTCGCATTTGGATCA+AGG | + | chr1_1:70108450-70108469 | Msa0040120:CDS | 45.0% | |
| ATTCGCATTTGGATCAAGGC+TGG | + | chr1_1:70108454-70108473 | Msa0040120:CDS | 45.0% | |
| TACCAGCAGGAATCTACCAT+CGG | + | chr1_1:70108491-70108510 | Msa0040120:CDS | 45.0% | |
| CGATTATATGCTGTCCACAC+CGG | - | chr1_1:70108750-70108769 | None:intergenic | 45.0% | |
| GACAGCATATAATCGACCAC+AGG | + | chr1_1:70108755-70108774 | Msa0040120:CDS | 45.0% | |
| GGAAGATAACCCTGCTAGAA+AGG | + | chr1_1:70108776-70108795 | Msa0040120:CDS | 45.0% | |
| AAGGGCTTGACTGAGAAAAC+TGG | + | chr1_1:70108807-70108826 | Msa0040120:CDS | 45.0% | |
| GATCCAAGACTTCCTCACCA+TGG | + | chr1_1:70107404-70107423 | Msa0040120:CDS | 50.0% | |
| TAGCCATGGTGAGGAAGTCT+TGG | - | chr1_1:70107410-70107429 | None:intergenic | 50.0% | |
| TTAGCAGCAACGCCACTGTT+AGG | + | chr1_1:70107892-70107911 | Msa0040120:intron | 50.0% | |
| CGTTACTGTTTGGAGGGAAG+TGG | + | chr1_1:70108397-70108416 | Msa0040120:CDS | 50.0% | |
| ACGATCGCTGGATTCGCATT+TGG | + | chr1_1:70108443-70108462 | Msa0040120:CDS | 50.0% | |
| AACCGATGGTAGATTCCTGC+TGG | - | chr1_1:70108496-70108515 | None:intergenic | 50.0% | |
| TTGTGTCGAGAGTGAACCGA+TGG | - | chr1_1:70108510-70108529 | None:intergenic | 50.0% | |
| GAGGTTGTTTATGGGTGAGC+CGG | + | chr1_1:70108728-70108747 | Msa0040120:CDS | 50.0% | |
| CTAGCAGGGTTATCTTCCTG+TGG | - | chr1_1:70108774-70108793 | None:intergenic | 50.0% | |
| ! | GGGTTCTAATGAGCTGCAAG+TGG | - | chr1_1:70108837-70108856 | None:intergenic | 50.0% |
| GATCCAAGACTTCCTCACCA+TGG | + | chr1_1:70107404-70107423 | Msa0040120:CDS | 50.0% | |
| TAGCCATGGTGAGGAAGTCT+TGG | - | chr1_1:70107410-70107429 | None:intergenic | 50.0% | |
| TTAGCAGCAACGCCACTGTT+AGG | + | chr1_1:70107892-70107911 | Msa0040120:intron | 50.0% | |
| CGTTACTGTTTGGAGGGAAG+TGG | + | chr1_1:70108397-70108416 | Msa0040120:CDS | 50.0% | |
| ACGATCGCTGGATTCGCATT+TGG | + | chr1_1:70108443-70108462 | Msa0040120:CDS | 50.0% | |
| AACCGATGGTAGATTCCTGC+TGG | - | chr1_1:70108496-70108515 | None:intergenic | 50.0% | |
| TTGTGTCGAGAGTGAACCGA+TGG | - | chr1_1:70108510-70108529 | None:intergenic | 50.0% | |
| GAGGTTGTTTATGGGTGAGC+CGG | + | chr1_1:70108728-70108747 | Msa0040120:CDS | 50.0% | |
| CTAGCAGGGTTATCTTCCTG+TGG | - | chr1_1:70108774-70108793 | None:intergenic | 50.0% | |
| ! | GGGTTCTAATGAGCTGCAAG+TGG | - | chr1_1:70108837-70108856 | None:intergenic | 50.0% |
| TCATTGGGGTAGCCATGGTG+AGG | - | chr1_1:70107419-70107438 | None:intergenic | 55.0% | |
| TGTTTATGGGTGAGCCGGTG+TGG | + | chr1_1:70108733-70108752 | Msa0040120:CDS | 55.0% | |
| TCATTGGGGTAGCCATGGTG+AGG | - | chr1_1:70107419-70107438 | None:intergenic | 55.0% | |
| TGTTTATGGGTGAGCCGGTG+TGG | + | chr1_1:70108733-70108752 | Msa0040120:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70107145 | 70109180 | 70107145 | ID=Msa0040120;Name=Msa0040120 |
| chr1_1 | mRNA | 70107145 | 70109180 | 70107145 | ID=Msa0040120-mRNA-1;Parent=Msa0040120;Name=Msa0040120-mRNA-1;_AED=0.40;_eAED=0.40;_QI=111|1|1|1|0.66|0.42|7|305|187 |
| chr1_1 | exon | 70107145 | 70107217 | 70107145 | ID=Msa0040120-mRNA-1:exon:23061;Parent=Msa0040120-mRNA-1 |
| chr1_1 | exon | 70107250 | 70107299 | 70107250 | ID=Msa0040120-mRNA-1:exon:23062;Parent=Msa0040120-mRNA-1 |
| chr1_1 | exon | 70107377 | 70107464 | 70107377 | ID=Msa0040120-mRNA-1:exon:23063;Parent=Msa0040120-mRNA-1 |
| chr1_1 | exon | 70107549 | 70107643 | 70107549 | ID=Msa0040120-mRNA-1:exon:23064;Parent=Msa0040120-mRNA-1 |
| chr1_1 | exon | 70108304 | 70108543 | 70108304 | ID=Msa0040120-mRNA-1:exon:23065;Parent=Msa0040120-mRNA-1 |
| chr1_1 | exon | 70108723 | 70109067 | 70108723 | ID=Msa0040120-mRNA-1:exon:23066;Parent=Msa0040120-mRNA-1 |
| chr1_1 | exon | 70109092 | 70109180 | 70109092 | ID=Msa0040120-mRNA-1:exon:23067;Parent=Msa0040120-mRNA-1 |
| chr1_1 | five_prime_UTR | 70107145 | 70107217 | 70107145 | ID=Msa0040120-mRNA-1:five_prime_utr;Parent=Msa0040120-mRNA-1 |
| chr1_1 | five_prime_UTR | 70107250 | 70107287 | 70107250 | ID=Msa0040120-mRNA-1:five_prime_utr;Parent=Msa0040120-mRNA-1 |
| chr1_1 | CDS | 70107288 | 70107299 | 70107288 | ID=Msa0040120-mRNA-1:cds;Parent=Msa0040120-mRNA-1 |
| chr1_1 | CDS | 70107377 | 70107464 | 70107377 | ID=Msa0040120-mRNA-1:cds;Parent=Msa0040120-mRNA-1 |
| chr1_1 | CDS | 70107549 | 70107643 | 70107549 | ID=Msa0040120-mRNA-1:cds;Parent=Msa0040120-mRNA-1 |
| chr1_1 | CDS | 70108304 | 70108543 | 70108304 | ID=Msa0040120-mRNA-1:cds;Parent=Msa0040120-mRNA-1 |
| chr1_1 | CDS | 70108723 | 70108851 | 70108723 | ID=Msa0040120-mRNA-1:cds;Parent=Msa0040120-mRNA-1 |
| chr1_1 | three_prime_UTR | 70108852 | 70109067 | 70108852 | ID=Msa0040120-mRNA-1:three_prime_utr;Parent=Msa0040120-mRNA-1 |
| chr1_1 | three_prime_UTR | 70109092 | 70109180 | 70109092 | ID=Msa0040120-mRNA-1:three_prime_utr;Parent=Msa0040120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
