AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0317360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317360 MtrunA17_Chr2g0290501 88.589 333 26 1 1 321 1 333 0.0 619
Msa0317360 MtrunA17_Chr4g0076351 70.144 278 65 5 59 321 3 277 1.48e-142 403
Msa0317360 MtrunA17_Chr3g0102431 56.458 271 106 1 62 320 16 286 7.05e-108 316
Msa0317360 MtrunA17_Chr8g0383231 55.906 254 97 3 72 312 19 270 9.59e-102 300
Msa0317360 MtrunA17_Chr3g0120821 49.606 254 114 2 71 312 80 331 3.18e-95 286
Msa0317360 MtrunA17_Chr4g0055811 46.043 278 137 2 56 320 76 353 1.15e-88 269
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317360 AT5G47650.5 58.015 262 96 2 71 320 19 278 9.43e-111 323
Msa0317360 AT5G47650.3 58.015 262 96 2 71 320 19 278 9.43e-111 323
Msa0317360 AT5G47650.1 58.015 262 96 2 71 320 19 278 9.43e-111 323
Msa0317360 AT5G47650.4 58.015 262 96 2 71 320 65 324 5.01e-110 323
Msa0317360 AT5G47650.2 58.015 262 96 2 71 320 66 325 5.53e-110 323
Msa0317360 AT4G25434.1 55.378 251 105 1 69 312 17 267 1.26e-99 295
Msa0317360 AT4G25434.10 54.510 255 104 1 70 312 18 272 8.18e-99 293
Msa0317360 AT4G25434.2 50.542 277 103 2 70 312 18 294 5.78e-94 281
Msa0317360 AT4G25434.8 49.645 282 103 2 70 312 18 299 3.02e-93 280
Msa0317360 AT4G12720.2 48.134 268 124 4 65 318 4 270 4.44e-87 263
Msa0317360 AT4G12720.3 48.134 268 124 4 65 318 4 270 4.44e-87 263
Msa0317360 AT4G12720.1 48.134 268 124 4 65 318 4 270 4.44e-87 263
Msa0317360 AT5G47240.1 45.172 290 141 4 37 312 65 350 8.52e-85 260
Msa0317360 AT4G25434.9 60.309 194 70 1 70 256 18 211 1.95e-82 248
Msa0317360 AT4G25434.7 58.794 199 70 1 70 256 18 216 1.15e-81 247
Msa0317360 AT4G12720.4 41.883 308 124 5 65 318 4 310 4.26e-79 244
Msa0317360 AT5G47240.2 41.379 319 140 5 37 312 65 379 7.37e-79 246
Msa0317360 AT2G04450.1 44.906 265 130 4 63 312 2 265 1.28e-78 241
Msa0317360 AT4G25434.6 52.212 226 69 2 70 256 18 243 2.42e-76 234
Msa0317360 AT4G25434.4 56.316 190 76 1 130 312 33 222 1.37e-74 229
Msa0317360 AT4G25434.3 54.872 195 76 1 130 312 33 227 7.76e-74 228
Msa0317360 AT4G25434.5 54.872 195 76 1 130 312 33 227 7.76e-74 228
Msa0317360 AT2G04430.2 42.379 269 136 6 68 319 7 273 1.02e-70 221
Msa0317360 AT2G04430.1 42.379 269 136 6 68 319 26 292 2.28e-70 221
Msa0317360 AT4G12720.5 51.980 202 83 3 65 252 4 205 7.68e-70 216
Msa0317360 AT4G25434.12 55.621 169 63 1 70 226 18 186 4.50e-63 200
Msa0317360 AT4G25434.13 47.343 207 70 2 145 312 1 207 9.45e-60 191
Msa0317360 AT4G25434.11 48.469 196 62 2 70 226 18 213 8.44e-58 187
Msa0317360 AT4G12720.6 45.745 188 87 4 145 318 1 187 2.32e-52 171
Msa0317360 AT2G04440.1 42.466 146 70 2 63 194 2 147 6.48e-36 129

Find 81 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACAAGCATTAAATATTT+TGG 0.133502 2_4:-15039626 None:intergenic
GAGAAGATAATTGAGAATTT+TGG 0.171118 2_4:-15038568 None:intergenic
ATAGGTTGATTCAGAATTTC+TGG 0.172583 2_4:+15040461 Msa0317360:intron
GGAATAGTATTTGGACTTTC+AGG 0.173194 2_4:-15039656 None:intergenic
TGCAAGATAACGAGAATTAT+TGG 0.203640 2_4:-15038596 None:intergenic
GCATTTGCAGGAATAGTATT+TGG 0.212021 2_4:-15039665 None:intergenic
ACTTCAAAATATCAGTCTTT+TGG 0.268444 2_4:-15041540 None:intergenic
AAGATGGATGGGCGATATTC+TGG 0.271028 2_4:+15041586 Msa0317360:CDS
TTCTGGAAGTATTAGCATTC+AGG 0.309877 2_4:+15040478 Msa0317360:CDS
TATTTCAGGGAACTGGAGTT+TGG 0.329206 2_4:+15040176 Msa0317360:intron
AATATTTAATGCTTGTGTAT+TGG 0.331420 2_4:+15039630 Msa0317360:CDS
CGATATTTGTTTGGCTAAGA+TGG 0.346862 2_4:+15041570 Msa0317360:CDS
TGCAGGGCAAGAAGGGAGTT+TGG 0.356585 2_4:+15039407 Msa0317360:intron
TGGAATTGTATTTATTTGAA+TGG 0.374721 2_4:-15038463 None:intergenic
ACCCTGTGTGTGGCATTTGC+AGG 0.375917 2_4:-15039677 None:intergenic
GTACATGAACGATATTTGTT+TGG 0.379153 2_4:+15041561 Msa0317360:CDS
CAAAGGTTAAACAGCTAGAT+AGG 0.395655 2_4:+15041710 Msa0317360:three_prime_UTR
AGTGGACTATTTCAGGGAAC+TGG 0.415432 2_4:+15040169 Msa0317360:intron
AGTGCAGAGGTCAGAGATAG+AGG 0.417005 2_4:+15040848 Msa0317360:CDS
CTATCTCTGACCTCTGCACT+TGG 0.417708 2_4:-15040845 None:intergenic
AATGACAAAGCCAGTACTAA+TGG 0.418928 2_4:-15041819 None:intergenic
CATTGATTTACCATTAGTAC+TGG 0.447908 2_4:+15041809 Msa0317360:three_prime_UTR
GCAAGACCGACTAGATGAAT+AGG 0.452463 2_4:-15039439 None:intergenic
CAAATTTAGTTTGTTAAACA+TGG 0.453432 2_4:+15041864 Msa0317360:three_prime_UTR
CAATAGAATTACCTTAACTA+AGG 0.454735 2_4:-15039467 None:intergenic
GGAATTGTATTTATTTGAAT+GGG 0.459796 2_4:-15038462 None:intergenic
ATTAAAACACCTACTTCAAA+AGG 0.463872 2_4:+15038664 Msa0317360:CDS
ATTCATTAAGTCAACAATGC+TGG 0.464038 2_4:+15041768 Msa0317360:three_prime_UTR
CACTTGGATCTCAGACGAAA+GGG 0.464839 2_4:-15040829 None:intergenic
ACATCGACTGATGATAAGTA+TGG 0.467374 2_4:+15038891 Msa0317360:CDS
TGTGGAGCTTGATCAGCCTA+TGG 0.468731 2_4:+15038923 Msa0317360:CDS
TGATTATAAAATAATATTGA+AGG 0.469022 2_4:-15042019 None:intergenic
GCGGTTGACATGCATCGAAT+AGG 0.469119 2_4:-15038834 None:intergenic
CCCTACCGGAGTTGTCGATC+AGG 0.481052 2_4:+15040204 Msa0317360:CDS
CCTTGTCTTGCAGGGCAAGA+AGG 0.482594 2_4:+15039399 Msa0317360:intron
CTTGTCTTGCAGGGCAAGAA+GGG 0.487747 2_4:+15039400 Msa0317360:intron
ATTTGTTTGGCTAAGATGGA+TGG 0.489246 2_4:+15041574 Msa0317360:CDS
GTCAGAGATAGAGGGTGCAC+AGG 0.494835 2_4:+15040857 Msa0317360:CDS
TAAATCTGACTTCTCAAAGA+AGG 0.503504 2_4:-15040784 None:intergenic
AATGAAAGTATTGAAGTTGA+AGG 0.508727 2_4:-15038509 None:intergenic
TATTATATGTACTTGAATGC+TGG 0.510440 2_4:+15041652 Msa0317360:CDS
ACTGCAGTGGATGCCATTTG+TGG 0.515009 2_4:+15041495 Msa0317360:intron
GATTATTTGAATAAACAAGC+TGG 0.515628 2_4:+15041944 Msa0317360:three_prime_UTR
TCTTGCTGAAGCCTTAGTTA+AGG 0.518721 2_4:+15039456 Msa0317360:CDS
AGAGAGGTCAAAGAAGAGAC+AGG 0.538041 2_4:+15040343 Msa0317360:CDS
TGAGACGCGTATTCCACAAA+TGG 0.538269 2_4:-15041508 None:intergenic
TATTCTTTATGTGTATGTTG+CGG 0.538500 2_4:+15040805 Msa0317360:CDS
AAGTTTGATAATGTAGATAC+CGG 0.539179 2_4:-15041616 None:intergenic
AAATTACCTATTCATCTAGT+CGG 0.540154 2_4:+15039433 Msa0317360:CDS
GCCACACACAGGGTTGGCAT+TGG 0.540943 2_4:+15039686 Msa0317360:CDS
TTTGTTTGGCTAAGATGGAT+GGG 0.543258 2_4:+15041575 Msa0317360:CDS
TGAATGCTGGAGCATTGAAA+AGG 0.556559 2_4:+15041665 Msa0317360:CDS
AACAATCAATAAAGTATACA+TGG 0.564596 2_4:+15041901 Msa0317360:three_prime_UTR
ATTGCATTCAAACAAGGAAG+TGG 0.568072 2_4:-15038408 None:intergenic
CAAACAAGGAAGTGGAACAT+TGG 0.574609 2_4:-15038400 None:intergenic
GCACTTGGATCTCAGACGAA+AGG 0.574989 2_4:-15040830 None:intergenic
GTGCAGAGGTCAGAGATAGA+GGG 0.598275 2_4:+15040849 Msa0317360:CDS
AAGTGGATTGCATTCAAACA+AGG 0.598994 2_4:-15038414 None:intergenic
TTCCTGCAAATGCCACACAC+AGG 0.601163 2_4:+15039675 Msa0317360:CDS
TTGTGTTGCAGCGGTAAGAG+AGG 0.604592 2_4:+15040327 Msa0317360:CDS
TAAGTATGGCGGCGTTATTG+TGG 0.606216 2_4:+15038905 Msa0317360:CDS
GCAAATGCCACACACAGGGT+TGG 0.610645 2_4:+15039680 Msa0317360:CDS
TTATATCTTCATGTAGAACA+AGG 0.611389 2_4:+15038635 Msa0317360:CDS
GGAGTTTGGAAATTCCCTAC+CGG 0.612649 2_4:+15040190 Msa0317360:CDS
ATGAATGTAGTCGAATCCAT+AGG 0.612824 2_4:-15038939 None:intergenic
CCTGATCGACAACTCCGGTA+GGG 0.614478 2_4:-15040204 None:intergenic
TCCTGCAAATGCCACACACA+GGG 0.616524 2_4:+15039676 Msa0317360:CDS
TCATTTGAAAGCAATTGTAG+TGG 0.618009 2_4:+15041837 Msa0317360:three_prime_UTR
AGAAGATATTTGTGTTGCAG+CGG 0.622613 2_4:+15040318 Msa0317360:CDS
TTGAACTTGATCTTCTGCCG+CGG 0.625446 2_4:-15038853 None:intergenic
ACCTGATCGACAACTCCGGT+AGG 0.630380 2_4:-15040205 None:intergenic
ACTTGGATCTCAGACGAAAG+GGG 0.640184 2_4:-15040828 None:intergenic
GCGATATTCTGGATATACTC+CGG 0.644082 2_4:+15041597 Msa0317360:CDS
CAACAATGCTGGTGTTGATG+AGG 0.645849 2_4:+15041779 Msa0317360:three_prime_UTR
ATTTACCTGATCGACAACTC+CGG 0.649547 2_4:-15040209 None:intergenic
CGGCAGAAGATCAAGTTCAA+CGG 0.658111 2_4:+15038856 Msa0317360:CDS
CGTCTGAGATCCAAGTGCAG+AGG 0.669999 2_4:+15040835 Msa0317360:CDS
ACCAATGCCAACCCTGTGTG+TGG 0.684168 2_4:-15039687 None:intergenic
TATTCGATGCATGTCAACCG+CGG 0.688175 2_4:+15038836 Msa0317360:CDS
TAAGATTGGAGTGACAAACA+CGG 0.706518 2_4:+15038809 Msa0317360:CDS
TCGACTGATGATAAGTATGG+CGG 0.725158 2_4:+15038894 Msa0317360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTAAATTAAATATAG+AGG - chr2_4:15040003-15040022 None:intergenic 10.0%
!! TGATTATAAAATAATATTGA+AGG - chr2_4:15042022-15042041 None:intergenic 10.0%
!!! CACTTTTTTTCTATAAATAA+AGG - chr2_4:15039972-15039991 None:intergenic 15.0%
!! TGATAATAAATAAGATACTT+GGG - chr2_4:15040050-15040069 None:intergenic 15.0%
!! TATCATCATATACAAAAAAT+AGG - chr2_4:15040256-15040275 None:intergenic 15.0%
!! ATATTATCAATGATTGAAAA+AGG + chr2_4:15040519-15040538 Msa0317360:intron 15.0%
!! TATTATCAATGATTGAAAAA+GGG + chr2_4:15040520-15040539 Msa0317360:intron 15.0%
!!! TTTAAAATGTTCAATACTTA+TGG + chr2_4:15040927-15040946 Msa0317360:intron 15.0%
!! GGAATTGTATTTATTTGAAT+GGG - chr2_4:15038465-15038484 None:intergenic 20.0%
!! TGGAATTGTATTTATTTGAA+TGG - chr2_4:15038466-15038485 None:intergenic 20.0%
!!! TGTTTATGATGATTATGTTT+TGG + chr2_4:15038702-15038721 Msa0317360:intron 20.0%
!! ACAATTGAGTTATTTATGTT+TGG + chr2_4:15039198-15039217 Msa0317360:intron 20.0%
!!! TTAGTTTCTTTTTTTGTCAT+TGG + chr2_4:15039283-15039302 Msa0317360:intron 20.0%
!!! TTTTATCCTTAAATATGTTC+TGG + chr2_4:15039330-15039349 Msa0317360:intron 20.0%
!! AAATTTCCAGAACATATTTA+AGG - chr2_4:15039339-15039358 None:intergenic 20.0%
!! ATTGCTTACCATATTAATAA+AGG + chr2_4:15039486-15039505 Msa0317360:intron 20.0%
!!! TACACAAGCATTAAATATTT+TGG - chr2_4:15039629-15039648 None:intergenic 20.0%
!! AATATTTAATGCTTGTGTAT+TGG + chr2_4:15039630-15039649 Msa0317360:CDS 20.0%
!!! TTTTTCTATAAATAAAGGAG+AGG - chr2_4:15039967-15039986 None:intergenic 20.0%
!! GTGATAATAAATAAGATACT+TGG - chr2_4:15040051-15040070 None:intergenic 20.0%
!! ATTATCAATGATTGAAAAAG+GGG + chr2_4:15040521-15040540 Msa0317360:intron 20.0%
!! ATGATATTAGCCAAAAAAAA+TGG - chr2_4:15040591-15040610 None:intergenic 20.0%
!!! ATTATTTCTTTAAAGTTTCC+TGG + chr2_4:15040681-15040700 Msa0317360:intron 20.0%
!! TCTATCTTAAATCCATTATT+GGG + chr2_4:15041042-15041061 Msa0317360:intron 20.0%
!!! ATGATATCATTTTAGGTTTT+AGG - chr2_4:15041216-15041235 None:intergenic 20.0%
!!! TAATGCTATGATATCATTTT+AGG - chr2_4:15041223-15041242 None:intergenic 20.0%
!! AACAACATTGAAAAATGAAA+AGG - chr2_4:15041406-15041425 None:intergenic 20.0%
!!! CAAATTTAGTTTGTTAAACA+TGG + chr2_4:15041864-15041883 Msa0317360:three_prime_UTR 20.0%
!! AACAATCAATAAAGTATACA+TGG + chr2_4:15041901-15041920 Msa0317360:three_prime_UTR 20.0%
! TGAAATTGAAACAGAAAAAG+TGG - chr2_4:15038434-15038453 None:intergenic 25.0%
! AAAAATTGAATGAATGAGGT+TGG - chr2_4:15038486-15038505 None:intergenic 25.0%
! GTTGAAAAATTGAATGAATG+AGG - chr2_4:15038490-15038509 None:intergenic 25.0%
!!! AATGAAAGTATTGAAGTTGA+AGG - chr2_4:15038512-15038531 None:intergenic 25.0%
!! GAGAAGATAATTGAGAATTT+TGG - chr2_4:15038571-15038590 None:intergenic 25.0%
! TTATATCTTCATGTAGAACA+AGG + chr2_4:15038635-15038654 Msa0317360:CDS 25.0%
! ATTAAAACACCTACTTCAAA+AGG + chr2_4:15038664-15038683 Msa0317360:CDS 25.0%
!! TTTTCCTTACTAGTTAAGAT+TGG + chr2_4:15038795-15038814 Msa0317360:intron 25.0%
! TATTTGATTGCATTCATTGA+TGG + chr2_4:15039043-15039062 Msa0317360:intron 25.0%
! TTGAGTTATTTATGTTTGGA+TGG + chr2_4:15039202-15039221 Msa0317360:intron 25.0%
! AAATTACCTATTCATCTAGT+CGG + chr2_4:15039433-15039452 Msa0317360:CDS 25.0%
! CAATAGAATTACCTTAACTA+AGG - chr2_4:15039470-15039489 None:intergenic 25.0%
! CAACAGAACCTTTATTAATA+TGG - chr2_4:15039497-15039516 None:intergenic 25.0%
! TTTACAATTCTTTCTATGAC+AGG + chr2_4:15039577-15039596 Msa0317360:intron 25.0%
!!! TTAAATATTTTGGTTCTGCA+TGG - chr2_4:15039619-15039638 None:intergenic 25.0%
! TTGTTTAGTATTTAATAGCG+AGG - chr2_4:15039746-15039765 None:intergenic 25.0%
! TAATCAAGCTTGTAGTTAAT+TGG + chr2_4:15039771-15039790 Msa0317360:intron 25.0%
!! AATGATAATGTCGTGTAAAT+TGG + chr2_4:15039863-15039882 Msa0317360:intron 25.0%
!! ATGATAATGTCGTGTAAATT+GGG + chr2_4:15039864-15039883 Msa0317360:intron 25.0%
! GTTCATTATCTGAATTTACA+CGG + chr2_4:15040077-15040096 Msa0317360:intron 25.0%
! CTACTTATTTAACCTATACA+GGG + chr2_4:15040295-15040314 Msa0317360:intron 25.0%
!!! CTTGGTTCTTTCAATTTTAT+AGG + chr2_4:15040443-15040462 Msa0317360:intron 25.0%
!!! ATTGACATGTCCATTTTTTT+TGG + chr2_4:15040578-15040597 Msa0317360:intron 25.0%
! AGAAATAAACAAATGTTCCA+AGG - chr2_4:15040635-15040654 None:intergenic 25.0%
! TATTCTTTATGTGTATGTTG+CGG + chr2_4:15040805-15040824 Msa0317360:CDS 25.0%
! TAGAAGAAAACATTAAGTGA+TGG - chr2_4:15040996-15041015 None:intergenic 25.0%
! GTCTATCTTAAATCCATTAT+TGG + chr2_4:15041041-15041060 Msa0317360:intron 25.0%
! ACACGTAAATACTAGATTAA+GGG - chr2_4:15041330-15041349 None:intergenic 25.0%
! AACACGTAAATACTAGATTA+AGG - chr2_4:15041331-15041350 None:intergenic 25.0%
! TAGTATTTACGTGTTTAGTT+AGG + chr2_4:15041336-15041355 Msa0317360:intron 25.0%
! ACATTGAAAAATGAAAAGGA+GGG - chr2_4:15041402-15041421 None:intergenic 25.0%
! AACATTGAAAAATGAAAAGG+AGG - chr2_4:15041403-15041422 None:intergenic 25.0%
!! ACTTCAAAATATCAGTCTTT+TGG - chr2_4:15041543-15041562 None:intergenic 25.0%
!!! AAGTTTGATAATGTAGATAC+CGG - chr2_4:15041619-15041638 None:intergenic 25.0%
! TATTATATGTACTTGAATGC+TGG + chr2_4:15041652-15041671 Msa0317360:CDS 25.0%
! GATTATTTGAATAAACAAGC+TGG + chr2_4:15041944-15041963 Msa0317360:three_prime_UTR 25.0%
TGCAAGATAACGAGAATTAT+TGG - chr2_4:15038599-15038618 None:intergenic 30.0%
! TTAGAGCTTCGATTTTACAT+TGG + chr2_4:15038970-15038989 Msa0317360:CDS 30.0%
CACAAGTTGTGAAATTGATT+TGG + chr2_4:15039173-15039192 Msa0317360:intron 30.0%
! AAAGGTTCTGTTGAGAATTT+TGG + chr2_4:15039504-15039523 Msa0317360:intron 30.0%
CTAGTGTATTTGGATCATTT+AGG + chr2_4:15039926-15039945 Msa0317360:intron 30.0%
CATCGTTATTCATTGATCTT+AGG + chr2_4:15040126-15040145 Msa0317360:intron 30.0%
!! GAAAATAGTGGACTATTTCA+GGG + chr2_4:15040163-15040182 Msa0317360:intron 30.0%
CCTGTATAGGTTAAATAAGT+AGG - chr2_4:15040297-15040316 None:intergenic 30.0%
CCTACTTATTTAACCTATAC+AGG + chr2_4:15040294-15040313 Msa0317360:intron 30.0%
!! ATAGGTTGATTCAGAATTTC+TGG + chr2_4:15040461-15040480 Msa0317360:intron 30.0%
TTGGCTAATATCATTGTCTA+TGG + chr2_4:15040597-15040616 Msa0317360:intron 30.0%
TGGCTAATATCATTGTCTAT+GGG + chr2_4:15040598-15040617 Msa0317360:intron 30.0%
TGAAAGAAGAAAAGAATGCT+TGG - chr2_4:15040730-15040749 None:intergenic 30.0%
TAAATCTGACTTCTCAAAGA+AGG - chr2_4:15040787-15040806 None:intergenic 30.0%
TTCAAACTAAGCAATGTTTC+TGG + chr2_4:15040902-15040921 Msa0317360:intron 30.0%
ATTAAGTGATGGCTTAATGA+AGG - chr2_4:15040985-15041004 None:intergenic 30.0%
CACGTAAATACTAGATTAAG+GGG - chr2_4:15041329-15041348 None:intergenic 30.0%
! TGTATTTTTCTTTACTGCAG+TGG + chr2_4:15041482-15041501 Msa0317360:intron 30.0%
GTACATGAACGATATTTGTT+TGG + chr2_4:15041561-15041580 Msa0317360:CDS 30.0%
ATTCATTAAGTCAACAATGC+TGG + chr2_4:15041768-15041787 Msa0317360:three_prime_UTR 30.0%
!! CATTGATTTACCATTAGTAC+TGG + chr2_4:15041809-15041828 Msa0317360:three_prime_UTR 30.0%
TCATTTGAAAGCAATTGTAG+TGG + chr2_4:15041837-15041856 Msa0317360:three_prime_UTR 30.0%
!!! AGTATACATGGTCATTTTTG+TGG + chr2_4:15041913-15041932 Msa0317360:three_prime_UTR 30.0%
ATTGCATTCAAACAAGGAAG+TGG - chr2_4:15038411-15038430 None:intergenic 35.0%
!! AAGTGGATTGCATTCAAACA+AGG - chr2_4:15038417-15038436 None:intergenic 35.0%
!!! AAGCAACTACCTTTTGAAGT+AGG - chr2_4:15038676-15038695 None:intergenic 35.0%
CTTCAAAAGGTAGTTGCTTA+AGG + chr2_4:15038677-15038696 Msa0317360:intron 35.0%
CACTCCAATCTTAACTAGTA+AGG - chr2_4:15038802-15038821 None:intergenic 35.0%
TAAGATTGGAGTGACAAACA+CGG + chr2_4:15038809-15038828 Msa0317360:CDS 35.0%
! ACATCGACTGATGATAAGTA+TGG + chr2_4:15038891-15038910 Msa0317360:CDS 35.0%
ATGAATGTAGTCGAATCCAT+AGG - chr2_4:15038942-15038961 None:intergenic 35.0%
! GATTTTACATTGGAAGCAGA+TGG + chr2_4:15038980-15038999 Msa0317360:CDS 35.0%
ACGACTATGCATGATGAAAT+AGG + chr2_4:15039114-15039133 Msa0317360:intron 35.0%
! ATGTTCTAGATACTGAACGA+CGG - chr2_4:15039310-15039329 None:intergenic 35.0%
TAAATCAACCTTGTCTTGCA+GGG + chr2_4:15039391-15039410 Msa0317360:intron 35.0%
CAATTCTTTCTATGACAGGA+AGG + chr2_4:15039581-15039600 Msa0317360:intron 35.0%
! TTCTATGACAGGAAGGTTTT+TGG + chr2_4:15039588-15039607 Msa0317360:intron 35.0%
GGAATAGTATTTGGACTTTC+AGG - chr2_4:15039659-15039678 None:intergenic 35.0%
GCATTTGCAGGAATAGTATT+TGG - chr2_4:15039668-15039687 None:intergenic 35.0%
TGTCATGAATGAAAAACACG+AGG + chr2_4:15039715-15039734 Msa0317360:CDS 35.0%
! AGTTTTCCTATCTTGTACCT+TGG + chr2_4:15039837-15039856 Msa0317360:intron 35.0%
ATTCTACCAAGGTACAAGAT+AGG - chr2_4:15039846-15039865 None:intergenic 35.0%
ACGACATTATCATTCTACCA+AGG - chr2_4:15039857-15039876 None:intergenic 35.0%
TGAGAGAGAACTAGTGTATT+TGG + chr2_4:15039916-15039935 Msa0317360:intron 35.0%
CTATAAATAAAGGAGAGGCA+AGG - chr2_4:15039962-15039981 None:intergenic 35.0%
ACAAGATATTAGCTGCCAAT+AGG - chr2_4:15040104-15040123 None:intergenic 35.0%
ATCTTAGGTACTAGTTGTTC+AGG + chr2_4:15040141-15040160 Msa0317360:intron 35.0%
CTAGTTGTTCAGGAAAATAG+TGG + chr2_4:15040151-15040170 Msa0317360:intron 35.0%
!! GGAAAATAGTGGACTATTTC+AGG + chr2_4:15040162-15040181 Msa0317360:intron 35.0%
CAAATATCTTCTCCCTGTAT+AGG - chr2_4:15040310-15040329 None:intergenic 35.0%
AGAAGATATTTGTGTTGCAG+CGG + chr2_4:15040318-15040337 Msa0317360:CDS 35.0%
AAGAACCAAGAGTTAAATGC+CGG - chr2_4:15040433-15040452 None:intergenic 35.0%
!! TTCTGGAAGTATTAGCATTC+AGG + chr2_4:15040478-15040497 Msa0317360:CDS 35.0%
TGAAAAAGGGGACTTCAAAT+TGG + chr2_4:15040533-15040552 Msa0317360:intron 35.0%
TAAATGCTTGACAAGAATCC+AGG - chr2_4:15040702-15040721 None:intergenic 35.0%
GGTACGTTAGTTATAGTTCA+AGG + chr2_4:15040878-15040897 Msa0317360:intron 35.0%
TGAAGGAAAGAGGAAGAAAA+TGG - chr2_4:15040968-15040987 None:intergenic 35.0%
TACGTGTTTAGTTAGGCATA+TGG + chr2_4:15041343-15041362 Msa0317360:intron 35.0%
ACGTGTTTAGTTAGGCATAT+GGG + chr2_4:15041344-15041363 Msa0317360:intron 35.0%
AGAATGCACATAGTAGAAGT+TGG - chr2_4:15041370-15041389 None:intergenic 35.0%
TTCTACTATGTGCATTCTGA+AGG + chr2_4:15041372-15041391 Msa0317360:intron 35.0%
! TTTAGAGTGTACTGTACCTT+AGG + chr2_4:15041446-15041465 Msa0317360:intron 35.0%
ACAGAATTGATATCTGCCTA+AGG - chr2_4:15041465-15041484 None:intergenic 35.0%
! ATATCAGTCTTTTGGACGAA+TGG - chr2_4:15041535-15041554 None:intergenic 35.0%
CGATATTTGTTTGGCTAAGA+TGG + chr2_4:15041570-15041589 Msa0317360:CDS 35.0%
ATTTGTTTGGCTAAGATGGA+TGG + chr2_4:15041574-15041593 Msa0317360:CDS 35.0%
TTTGTTTGGCTAAGATGGAT+GGG + chr2_4:15041575-15041594 Msa0317360:CDS 35.0%
!!! TGCTGATGTTTTTCAAGAGT+TGG - chr2_4:15041692-15041711 None:intergenic 35.0%
CTCTTGAAAAACATCAGCAA+AGG + chr2_4:15041693-15041712 Msa0317360:exon 35.0%
CAAAGGTTAAACAGCTAGAT+AGG + chr2_4:15041710-15041729 Msa0317360:three_prime_UTR 35.0%
AATGACAAAGCCAGTACTAA+TGG - chr2_4:15041822-15041841 None:intergenic 35.0%
CAAACAAGGAAGTGGAACAT+TGG - chr2_4:15038403-15038422 None:intergenic 40.0%
TCGACTGATGATAAGTATGG+CGG + chr2_4:15038894-15038913 Msa0317360:CDS 40.0%
! TGTTCTAGATACTGAACGAC+GGG - chr2_4:15039309-15039328 None:intergenic 40.0%
GTAAATCAACCTTGTCTTGC+AGG + chr2_4:15039390-15039409 Msa0317360:intron 40.0%
TCTTGCTGAAGCCTTAGTTA+AGG + chr2_4:15039456-15039475 Msa0317360:CDS 40.0%
! AAGTACTGTCTTGACGTTTG+AGG + chr2_4:15039794-15039813 Msa0317360:intron 40.0%
AGTACTGTCTTGACGTTTGA+GGG + chr2_4:15039795-15039814 Msa0317360:intron 40.0%
CTGAATTTACACGGTCCTAT+TGG + chr2_4:15040086-15040105 Msa0317360:intron 40.0%
TATTTCAGGGAACTGGAGTT+TGG + chr2_4:15040176-15040195 Msa0317360:intron 40.0%
ATTTACCTGATCGACAACTC+CGG - chr2_4:15040212-15040231 None:intergenic 40.0%
TGTCGATCAGGTAAATGTGT+TGG + chr2_4:15040216-15040235 Msa0317360:intron 40.0%
CGATGCTGTACAATTACCTT+CGG + chr2_4:15040378-15040397 Msa0317360:intron 40.0%
GATGCTGTACAATTACCTTC+GGG + chr2_4:15040379-15040398 Msa0317360:intron 40.0%
TAGACGAACTGGAATCTACA+TGG - chr2_4:15040410-15040429 None:intergenic 40.0%
AAAAGGGGACTTCAAATTGG+AGG + chr2_4:15040536-15040555 Msa0317360:intron 40.0%
GACTTCAAATTGGAGGTAGA+AGG + chr2_4:15040543-15040562 Msa0317360:intron 40.0%
GATGGCTTAATGAAGGAAAG+AGG - chr2_4:15040978-15040997 None:intergenic 40.0%
GTAAGGTGAAGATTGCCTAA+GGG - chr2_4:15041171-15041190 None:intergenic 40.0%
TGTAAGGTGAAGATTGCCTA+AGG - chr2_4:15041172-15041191 None:intergenic 40.0%
GCAATCTTCACCTTACAAGT+CGG + chr2_4:15041175-15041194 Msa0317360:intron 40.0%
!! TTCCATGAAACCGACTTGTA+AGG - chr2_4:15041188-15041207 None:intergenic 40.0%
! CAAGTCGGTTTCATGGAATT+AGG + chr2_4:15041190-15041209 Msa0317360:intron 40.0%
GCGATATTCTGGATATACTC+CGG + chr2_4:15041597-15041616 Msa0317360:CDS 40.0%
!! TGAATGCTGGAGCATTGAAA+AGG + chr2_4:15041665-15041684 Msa0317360:CDS 40.0%
TATTCGATGCATGTCAACCG+CGG + chr2_4:15038836-15038855 Msa0317360:CDS 45.0%
TTGAACTTGATCTTCTGCCG+CGG - chr2_4:15038856-15038875 None:intergenic 45.0%
CGGCAGAAGATCAAGTTCAA+CGG + chr2_4:15038856-15038875 Msa0317360:CDS 45.0%
TAAGTATGGCGGCGTTATTG+TGG + chr2_4:15038905-15038924 Msa0317360:CDS 45.0%
! TGTGTGTCTGAGACAAGCAT+TGG - chr2_4:15039157-15039176 None:intergenic 45.0%
GCAAGACCGACTAGATGAAT+AGG - chr2_4:15039442-15039461 None:intergenic 45.0%
!! AGTGGACTATTTCAGGGAAC+TGG + chr2_4:15040169-15040188 Msa0317360:intron 45.0%
GGAGTTTGGAAATTCCCTAC+CGG + chr2_4:15040190-15040209 Msa0317360:CDS 45.0%
AGAGAGGTCAAAGAAGAGAC+AGG + chr2_4:15040343-15040362 Msa0317360:CDS 45.0%
GTAGATTCCAGTTCGTCTAC+CGG + chr2_4:15040411-15040430 Msa0317360:intron 45.0%
TTAAATGCCGGTAGACGAAC+TGG - chr2_4:15040421-15040440 None:intergenic 45.0%
GTCTACCGGCATTTAACTCT+TGG + chr2_4:15040425-15040444 Msa0317360:intron 45.0%
TATGGGAGAATGTGTGTCCT+TGG + chr2_4:15040615-15040634 Msa0317360:intron 45.0%
ACTTGGATCTCAGACGAAAG+GGG - chr2_4:15040831-15040850 None:intergenic 45.0%
CACTTGGATCTCAGACGAAA+GGG - chr2_4:15040832-15040851 None:intergenic 45.0%
! AGCATTGGATGGCCCAATAA+TGG - chr2_4:15041057-15041076 None:intergenic 45.0%
TATTGGGCCATCCAATGCTT+AGG + chr2_4:15041058-15041077 Msa0317360:intron 45.0%
ATTGGGCCATCCAATGCTTA+GGG + chr2_4:15041059-15041078 Msa0317360:intron 45.0%
!! AACAGACCCTAAGCATTGGA+TGG - chr2_4:15041068-15041087 None:intergenic 45.0%
TCCAATGCTTAGGGTCTGTT+TGG + chr2_4:15041068-15041087 Msa0317360:intron 45.0%
CCAATGCTTAGGGTCTGTTT+GGG + chr2_4:15041069-15041088 Msa0317360:intron 45.0%
TAGGGTCTGTTTGGGAGTTT+AGG + chr2_4:15041077-15041096 Msa0317360:intron 45.0%
GTCTGTTTGGGAGTTTAGGA+GGG + chr2_4:15041081-15041100 Msa0317360:intron 45.0%
TCTGTTTGGGAGTTTAGGAG+GGG + chr2_4:15041082-15041101 Msa0317360:intron 45.0%
! CACCTTACAAGTCGGTTTCA+TGG + chr2_4:15041183-15041202 Msa0317360:intron 45.0%
TATCCAGTCTCGAGCTTGAA+AGG + chr2_4:15041257-15041276 Msa0317360:intron 45.0%
TGAGACGCGTATTCCACAAA+TGG - chr2_4:15041511-15041530 None:intergenic 45.0%
AAGATGGATGGGCGATATTC+TGG + chr2_4:15041586-15041605 Msa0317360:CDS 45.0%
!! CAACAATGCTGGTGTTGATG+AGG + chr2_4:15041779-15041798 Msa0317360:three_prime_UTR 45.0%
GCGGTTGACATGCATCGAAT+AGG - chr2_4:15038837-15038856 None:intergenic 50.0%
TGTGGAGCTTGATCAGCCTA+TGG + chr2_4:15038923-15038942 Msa0317360:CDS 50.0%
CTTGTCTTGCAGGGCAAGAA+GGG + chr2_4:15039400-15039419 Msa0317360:intron 50.0%
TTCCTGCAAATGCCACACAC+AGG + chr2_4:15039675-15039694 Msa0317360:CDS 50.0%
TCCTGCAAATGCCACACACA+GGG + chr2_4:15039676-15039695 Msa0317360:CDS 50.0%
TTGTGTTGCAGCGGTAAGAG+AGG + chr2_4:15040327-15040346 Msa0317360:CDS 50.0%
!! ATCTACATGGACTAGCCCGA+AGG - chr2_4:15040397-15040416 None:intergenic 50.0%
GCACTTGGATCTCAGACGAA+AGG - chr2_4:15040833-15040852 None:intergenic 50.0%
CTATCTCTGACCTCTGCACT+TGG - chr2_4:15040848-15040867 None:intergenic 50.0%
AGTGCAGAGGTCAGAGATAG+AGG + chr2_4:15040848-15040867 Msa0317360:CDS 50.0%
GTGCAGAGGTCAGAGATAGA+GGG + chr2_4:15040849-15040868 Msa0317360:CDS 50.0%
CCCAAACAGACCCTAAGCAT+TGG - chr2_4:15041072-15041091 None:intergenic 50.0%
GGTCTGTTTGGGAGTTTAGG+AGG + chr2_4:15041080-15041099 Msa0317360:intron 50.0%
GAGTTTAGGAGGGGAGAAGA+GGG + chr2_4:15041091-15041110 Msa0317360:intron 50.0%
TAAGGGCCTGTTTGGGAGTT+TGG - chr2_4:15041154-15041173 None:intergenic 50.0%
AAACTCCCAAACAGGCCCTT+AGG + chr2_4:15041153-15041172 Msa0317360:intron 50.0%
GATTGCCTAAGGGCCTGTTT+GGG - chr2_4:15041161-15041180 None:intergenic 50.0%
AGATTGCCTAAGGGCCTGTT+TGG - chr2_4:15041162-15041181 None:intergenic 50.0%
TCTCCTTTCAAGCTCGAGAC+TGG - chr2_4:15041263-15041282 None:intergenic 50.0%
! ACTGCAGTGGATGCCATTTG+TGG + chr2_4:15041495-15041514 Msa0317360:intron 50.0%
CCTTCTTGCCCTGCAAGACA+AGG - chr2_4:15039402-15039421 None:intergenic 55.0%
CCTTGTCTTGCAGGGCAAGA+AGG + chr2_4:15039399-15039418 Msa0317360:intron 55.0%
TGCAGGGCAAGAAGGGAGTT+TGG + chr2_4:15039407-15039426 Msa0317360:intron 55.0%
ACCCTGTGTGTGGCATTTGC+AGG - chr2_4:15039680-15039699 None:intergenic 55.0%
GCAAATGCCACACACAGGGT+TGG + chr2_4:15039680-15039699 Msa0317360:CDS 55.0%
ACCAATGCCAACCCTGTGTG+TGG - chr2_4:15039690-15039709 None:intergenic 55.0%
CCTGATCGACAACTCCGGTA+GGG - chr2_4:15040207-15040226 None:intergenic 55.0%
ACCTGATCGACAACTCCGGT+AGG - chr2_4:15040208-15040227 None:intergenic 55.0%
! CGTCTGAGATCCAAGTGCAG+AGG + chr2_4:15040835-15040854 Msa0317360:CDS 55.0%
! GTCAGAGATAGAGGGTGCAC+AGG + chr2_4:15040857-15040876 Msa0317360:CDS 55.0%
GGAGTTTAGGAGGGGAGAAG+AGG + chr2_4:15041090-15041109 Msa0317360:intron 55.0%
! AGCGAAGGACTTTGGGGGAA+GGG - chr2_4:15041126-15041145 None:intergenic 55.0%
TCCCCTCCAAACTCCCAAAC+AGG + chr2_4:15041145-15041164 Msa0317360:intron 55.0%
GCCTGTTTGGGAGTTTGGAG+GGG - chr2_4:15041149-15041168 None:intergenic 55.0%
GGCCTGTTTGGGAGTTTGGA+GGG - chr2_4:15041150-15041169 None:intergenic 55.0%
! GCCACACACAGGGTTGGCAT+TGG + chr2_4:15039686-15039705 Msa0317360:CDS 60.0%
CCCTACCGGAGTTGTCGATC+AGG + chr2_4:15040204-15040223 Msa0317360:CDS 60.0%
AGGAGGGGAGAAGAGGGCTA+TGG + chr2_4:15041097-15041116 Msa0317360:intron 60.0%
GGAGGGGAGAAGAGGGCTAT+GGG + chr2_4:15041098-15041117 Msa0317360:intron 60.0%
! GCGAAGGACTTTGGGGGAAG+GGG - chr2_4:15041125-15041144 None:intergenic 60.0%
! GAGCGAAGGACTTTGGGGGA+AGG - chr2_4:15041127-15041146 None:intergenic 60.0%
AGGGGAGCGAAGGACTTTGG+GGG - chr2_4:15041131-15041150 None:intergenic 60.0%
GAGGGGAGCGAAGGACTTTG+GGG - chr2_4:15041132-15041151 None:intergenic 60.0%
GGAGGGGAGCGAAGGACTTT+GGG - chr2_4:15041133-15041152 None:intergenic 60.0%
TGGAGGGGAGCGAAGGACTT+TGG - chr2_4:15041134-15041153 None:intergenic 60.0%
GGGCCTGTTTGGGAGTTTGG+AGG - chr2_4:15041151-15041170 None:intergenic 60.0%
GGGAGTTTGGAGGGGAGCGA+AGG - chr2_4:15041141-15041160 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 15038400 15042052 15038400 ID=Msa0317360;Name=Msa0317360
chr2_4 mRNA 15038400 15042052 15038400 ID=Msa0317360-mRNA-1;Parent=Msa0317360;Name=Msa0317360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=153|0.87|0.88|1|1|1|9|353|321
chr2_4 exon 15038400 15038685 15038400 ID=Msa0317360-mRNA-1:exon:5620;Parent=Msa0317360-mRNA-1
chr2_4 exon 15038808 15039001 15038808 ID=Msa0317360-mRNA-1:exon:5621;Parent=Msa0317360-mRNA-1
chr2_4 exon 15039412 15039477 15039412 ID=Msa0317360-mRNA-1:exon:5622;Parent=Msa0317360-mRNA-1
chr2_4 exon 15039599 15039736 15039599 ID=Msa0317360-mRNA-1:exon:5623;Parent=Msa0317360-mRNA-1
chr2_4 exon 15040184 15040225 15040184 ID=Msa0317360-mRNA-1:exon:5624;Parent=Msa0317360-mRNA-1
chr2_4 exon 15040316 15040366 15040316 ID=Msa0317360-mRNA-1:exon:5625;Parent=Msa0317360-mRNA-1
chr2_4 exon 15040465 15040499 15040465 ID=Msa0317360-mRNA-1:exon:5626;Parent=Msa0317360-mRNA-1
chr2_4 exon 15040770 15040878 15040770 ID=Msa0317360-mRNA-1:exon:5627;Parent=Msa0317360-mRNA-1
chr2_4 exon 15041502 15042052 15041502 ID=Msa0317360-mRNA-1:exon:5628;Parent=Msa0317360-mRNA-1
chr2_4 five_prime_UTR 15038400 15038552 15038400 ID=Msa0317360-mRNA-1:five_prime_utr;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15038553 15038685 15038553 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15038808 15039001 15038808 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15039412 15039477 15039412 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15039599 15039736 15039599 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15040184 15040225 15040184 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15040316 15040366 15040316 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15040465 15040499 15040465 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15040770 15040878 15040770 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 CDS 15041502 15041699 15041502 ID=Msa0317360-mRNA-1:cds;Parent=Msa0317360-mRNA-1
chr2_4 three_prime_UTR 15041700 15042052 15041700 ID=Msa0317360-mRNA-1:three_prime_utr;Parent=Msa0317360-mRNA-1
Gene Sequence

>Msa0317360

ATGCTTAGATCGCTTCCAAAATTCTCAATTATCTTCTCTTCAACCAATAATTCTCGTTATCTTGCAAATGCTACTCAACGCTTTATATCTTCATGTAGAACAAGGAGAATAATTAAAACACCTACTTCAAAAGTTAAGATTGGAGTGACAAACACGGTTCCTATTCGATGCATGTCAACCGCGGCAGAAGATCAAGTTCAACGGATTAAAGTACTAACATCGACTGATGATAAGTATGGCGGCGTTATTGTGGAGCTTGATCAGCCTATGGATTCGACTACATTCATCTCAATTCTTAGAGCTTCGATTTTACATTGGAAGCAGATGGGCAAGAAGGGAGTTTGGATAAAATTACCTATTCATCTAGTCGGTCTTGCTGAAGCCTTAGTTAAGGAAGGTTTTTGGTTTCACCATGCAGAACCAAAATATTTAATGCTTGTGTATTGGATTCCTGAAAGTCCAAATACTATTCCTGCAAATGCCACACACAGGGTTGGCATTGGTTCATTTGTCATGAATGAAAAACACGAGGGAACTGGAGTTTGGAAATTCCCTACCGGAGTTGTCGATCAGGGAGAAGATATTTGTGTTGCAGCGGTAAGAGAGGTCAAAGAAGAGACAGGAGTTGATTCAGAATTTCTGGAAGTATTAGCATTCAGACAGAGTCACAATTCCTTCTTTGAGAAGTCAGATTTATTCTTTATGTGTATGTTGCGGCCCCTTTCGTCTGAGATCCAAGTGCAGAGGTCAGAGATAGAGGGTGCACAGTGGATGCCATTTGTGGAATACGCGTCTCAGCCATTCGTCCAAAAGACTGATATTTTGAAGTACATGAACGATATTTGTTTGGCTAAGATGGATGGGCGATATTCTGGATATACTCCGGTATCTACATTATCAAACTTCTCAGAACAGCAGTATTATATGTACTTGAATGCTGGAGCATTGAAAAGGTCCAACTCTTGA

Protein sequence

>Msa0317360

MLRSLPKFSIIFSSTNNSRYLANATQRFISSCRTRRIIKTPTSKVKIGVTNTVPIRCMSTAAEDQVQRIKVLTSTDDKYGGVIVELDQPMDSTTFISILRASILHWKQMGKKGVWIKLPIHLVGLAEALVKEGFWFHHAEPKYLMLVYWIPESPNTIPANATHRVGIGSFVMNEKHEGTGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFLEVLAFRQSHNSFFEKSDLFFMCMLRPLSSEIQVQRSEIEGAQWMPFVEYASQPFVQKTDILKYMNDICLAKMDGRYSGYTPVSTLSNFSEQQYYMYLNAGALKRSNS*