AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443250 MtrunA17_Chr3g0081651 87.454 271 25 3 1 264 1 269 7.77e-154 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443250 AT5G07020.1 64.500 200 58 4 27 213 26 225 6.12e-81 243

Find 82 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTAACTTCCTTATC+AGG 0.164073 3_3:-13886236 None:intergenic
AGATTCCAATTATAGGATTT+TGG 0.200860 3_3:-13885968 None:intergenic
TGATGGAGAAAGAAGGTTTA+TGG 0.216940 3_3:-13885936 None:intergenic
CATTCATTTGTTATCAATAA+TGG 0.226592 3_3:+13886061 Msa0443250:exon
TTGACATAATATTTCAAATA+TGG 0.228269 3_3:-13888847 None:intergenic
AAATATAAACACACTTAATT+TGG 0.234280 3_3:-13888752 None:intergenic
CCAAACCAAAATCCTATAAT+TGG 0.249655 3_3:+13885963 Msa0443250:five_prime_UTR
GCTTAGGTATACAAGGTTAA+TGG 0.352128 3_3:+13888711 Msa0443250:three_prime_UTR
GGCACATGTGTTGGTTGTTA+TGG 0.357906 3_3:-13886102 None:intergenic
CAGCCGGTTGAATTGTGAAT+TGG 0.366130 3_3:+13888922 Msa0443250:three_prime_UTR
GTAGGTTGGGAAGGTGAGTA+TGG 0.374281 3_3:+13887253 Msa0443250:intron
GTCACATTACATGTTTGAAC+TGG 0.406350 3_3:+13888971 Msa0443250:three_prime_UTR
GATTAAACCAACTGACGAAC+GGG 0.425048 3_3:-13888945 None:intergenic
TGTACCGGTCTCGGTGCTCT+CGG 0.427751 3_3:-13888512 None:intergenic
TGTTTGAACTGGAATTGAAA+TGG 0.439786 3_3:+13888982 Msa0443250:three_prime_UTR
TATATTGATAATATGAGCTT+AGG 0.443146 3_3:+13888695 Msa0443250:three_prime_UTR
TAAAGCAATGTTTCAAAAGC+CGG 0.443726 3_3:+13888884 Msa0443250:three_prime_UTR
GCAGAAAGTGCTATAAGTTC+AGG 0.456072 3_3:+13888163 Msa0443250:CDS
GCTATAAGTTCAGGAACATC+TGG 0.456974 3_3:+13888172 Msa0443250:CDS
GTGTTAAGATGGGTGGTTTG+TGG 0.462153 3_3:-13885894 None:intergenic
CAGAACACAGCAGCAATTGC+TGG 0.464297 3_3:+13888214 Msa0443250:CDS
GTTCAAACATGTAATGTGAC+TGG 0.466477 3_3:-13888968 None:intergenic
GGAAGAATGTGCCCCTGATA+AGG 0.476565 3_3:+13886223 Msa0443250:CDS
AGATAATGATGTACCGGTCT+CGG 0.478743 3_3:-13888521 None:intergenic
GTTTGAACTGGAATTGAAAT+GGG 0.480246 3_3:+13888983 Msa0443250:three_prime_UTR
TGGTAAGAATTCTCCTCCTC+AGG 0.480874 3_3:+13888288 Msa0443250:CDS
TAGAACAGTCTCGGTGCTCT+CGG 0.481512 3_3:-13888473 None:intergenic
GAATTGGCCCGTTCGTCAGT+TGG 0.484828 3_3:+13888938 Msa0443250:three_prime_UTR
CGTCGTAAGCAGGGTTGGAC+AGG 0.487965 3_3:+13887323 Msa0443250:CDS
ATATCCACCACGTCGTAAGC+AGG 0.491350 3_3:+13887313 Msa0443250:CDS
GGGCCAATTCACAATTCAAC+CGG 0.493650 3_3:-13888925 None:intergenic
GGCATCATCAATACTTCTAC+AGG 0.502782 3_3:+13888264 Msa0443250:CDS
ATGTCCACACTTGAGGTCTC+TGG 0.503884 3_3:-13888604 None:intergenic
GTACCGGTCTCGGTGCTCTC+GGG 0.504561 3_3:-13888511 None:intergenic
AGAACAGTCTCGGTGCTCTC+GGG 0.508585 3_3:-13888472 None:intergenic
TTGGACAGGCTATGTTGAAA+AGG 0.509725 3_3:+13887337 Msa0443250:CDS
ATGAACTAACTTCCTTATCA+GGG 0.510435 3_3:-13886235 None:intergenic
GGATTAAACCAACTGACGAA+CGG 0.511165 3_3:-13888946 None:intergenic
TTTCCAGCCAGCAGTTTATG+TGG 0.517990 3_3:+13888141 Msa0443250:intron
ACATCTGGTTCTTCTTCTGA+TGG 0.519250 3_3:+13888187 Msa0443250:CDS
AACCGGCTGAACTGCCTACT+CGG 0.519635 3_3:-13888908 None:intergenic
GAGGAGAAGACAAAAGTAGT+AGG 0.520284 3_3:+13887287 Msa0443250:CDS
TATTATGTCAAGGATTTCAA+AGG 0.521688 3_3:+13888859 Msa0443250:three_prime_UTR
TTCTGAGTCTGATTGTAATG+AGG 0.526364 3_3:+13886202 Msa0443250:CDS
TGAACTTGAGAAACTTCTGC+AGG 0.529946 3_3:-13888562 None:intergenic
AGTACCGTCTCAGTGCTCTC+AGG 0.533255 3_3:-13888433 None:intergenic
ATATCATTGAACACAACTAA+AGG 0.539396 3_3:+13888794 Msa0443250:three_prime_UTR
GCTGAACTGCCTACTCGGTC+CGG 0.544520 3_3:-13888903 None:intergenic
GTAGTAACTAAGTGATGGCC+CGG 0.545619 3_3:-13888329 None:intergenic
CACCACGTCGTAAGCAGGGT+TGG 0.545868 3_3:+13887318 Msa0443250:CDS
CTTTCTGCCACATAAACTGC+TGG 0.548485 3_3:-13888148 None:intergenic
TCTGTCTCGGCTGTCACGGA+AGG 0.554967 3_3:-13888388 None:intergenic
TGTGTGTGTGTTAAGATGGG+TGG 0.574031 3_3:-13885901 None:intergenic
GACCGAGTAGGCAGTTCAGC+CGG 0.575661 3_3:+13888906 Msa0443250:three_prime_UTR
ATATTTGAAATATTATGTCA+AGG 0.576341 3_3:+13888849 Msa0443250:three_prime_UTR
TATGTTGAAAAGGATACTGC+TGG 0.576621 3_3:+13887347 Msa0443250:CDS
TTGAACAGATAATGATGTAC+CGG 0.577772 3_3:-13888527 None:intergenic
TGTTGAAAAGGCACATGTGT+TGG 0.578537 3_3:-13886111 None:intergenic
TAGCTCTGTCTCGGCTGTCA+CGG 0.580247 3_3:-13888392 None:intergenic
CAACCCGAGAGCACCGAGAC+CGG 0.582810 3_3:+13888508 Msa0443250:CDS
GATGGTGATGTAGGTTGGGA+AGG 0.583948 3_3:+13887244 Msa0443250:intron
GAGTATGGAATGGTTAGCAG+AGG 0.584567 3_3:+13887268 Msa0443250:CDS
TTCAAACATGTAATGTGACT+GGG 0.593343 3_3:-13888967 None:intergenic
TGATGATGATAGCTCTGTCT+CGG 0.593774 3_3:-13888401 None:intergenic
AATATGAGCTTAGGTATACA+AGG 0.593928 3_3:+13888704 Msa0443250:three_prime_UTR
TCATCAATACTTCTACAGGT+TGG 0.599103 3_3:+13888268 Msa0443250:CDS
TTTCAAAAGCCGGACCGAGT+AGG 0.600234 3_3:+13888894 Msa0443250:three_prime_UTR
AGGTATACAAGGTTAATGGA+TGG 0.605297 3_3:+13888715 Msa0443250:three_prime_UTR
AGATACGATGTCCACACTTG+AGG 0.605880 3_3:-13888611 None:intergenic
AGATGATGATAGAACAGTCT+CGG 0.611343 3_3:-13888482 None:intergenic
GACAAATATATATTCAGTCG+AGG 0.616952 3_3:+13887373 Msa0443250:CDS
TTGGGAAGGTGAGTATGGAA+TGG 0.617296 3_3:+13887258 Msa0443250:CDS
TTGATGTAGTAACTAAGTGA+TGG 0.619070 3_3:-13888334 None:intergenic
GTCCAACCCTGCTTACGACG+TGG 0.625515 3_3:-13887320 None:intergenic
TATCCACCACGTCGTAAGCA+GGG 0.636876 3_3:+13887314 Msa0443250:CDS
TGAACTAACTTCCTTATCAG+GGG 0.643950 3_3:-13886234 None:intergenic
TGCACTGATCTCAATTGCCG+CGG 0.650728 3_3:+13888243 Msa0443250:CDS
TCAGCCAGAGACCTCAAGTG+TGG 0.655701 3_3:+13888600 Msa0443250:CDS
CAACCCTGCTTACGACGTGG+TGG 0.656386 3_3:-13887317 None:intergenic
TAGAAGTATTGATGATGCCG+CGG 0.657463 3_3:-13888260 None:intergenic
AACACAGCAGCAATTGCTGG+TGG 0.671200 3_3:+13888217 Msa0443250:CDS
TCAACCTGAGAGCACTGAGA+CGG 0.673669 3_3:+13888429 Msa0443250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGAATTTTTTCTATTATTA+AGG + chr3_3:13887397-13887416 Msa0443250:intron 10.0%
!!! TGTTTTATACTTTTATTACT+TGG + chr3_3:13886307-13886326 Msa0443250:intron 15.0%
!!! AGTTTGTTTATACTTTATAT+TGG + chr3_3:13886613-13886632 Msa0443250:intron 15.0%
!!! TTTATACTTTATATTGGTTT+TGG + chr3_3:13886619-13886638 Msa0443250:intron 15.0%
!!! ATCAATTTGAATATTGTTTT+TGG + chr3_3:13886665-13886684 Msa0443250:intron 15.0%
!! AAATATAAACACACTTAATT+TGG - chr3_3:13888755-13888774 None:intergenic 15.0%
!! TTGACATAATATTTCAAATA+TGG - chr3_3:13888850-13888869 None:intergenic 15.0%
!!! ATATTTGAAATATTATGTCA+AGG + chr3_3:13888849-13888868 Msa0443250:three_prime_UTR 15.0%
!! AAGAAAAAGATTCCAATTAT+AGG - chr3_3:13885978-13885997 None:intergenic 20.0%
!!! CATTCATTTGTTATCAATAA+TGG + chr3_3:13886061-13886080 Msa0443250:exon 20.0%
!! CATTCATTAAATGATGTATA+TGG - chr3_3:13886498-13886517 None:intergenic 20.0%
!! TATTATGCTTTGCTTATAAA+GGG + chr3_3:13886590-13886609 Msa0443250:intron 20.0%
!! TCTCTAATCAAATTATACAA+TGG - chr3_3:13886646-13886665 None:intergenic 20.0%
!!! TAGAATTATATGGTCTTAAA+AGG + chr3_3:13886962-13886981 Msa0443250:intron 20.0%
!!! CATATCAATTTTAGAGTATT+TGG + chr3_3:13887588-13887607 Msa0443250:intron 20.0%
!! TACATGTGATATTTAATGTA+AGG - chr3_3:13887742-13887761 None:intergenic 20.0%
!! GTAATGTAATACAAAAATCA+CGG + chr3_3:13887759-13887778 Msa0443250:intron 20.0%
!!! TTATTTTCATAAACTTTCCA+AGG - chr3_3:13887902-13887921 None:intergenic 20.0%
!!! TATATTGATAATATGAGCTT+AGG + chr3_3:13888695-13888714 Msa0443250:three_prime_UTR 20.0%
!! AGATTCCAATTATAGGATTT+TGG - chr3_3:13885971-13885990 None:intergenic 25.0%
! CACACAATTAACTGAAAAAA+TGG - chr3_3:13886274-13886293 None:intergenic 25.0%
!!! ATTACTTGGTATGTTTTGTT+TGG + chr3_3:13886321-13886340 Msa0443250:intron 25.0%
! TGAGAAAATTAAGGAAAACT+AGG + chr3_3:13886348-13886367 Msa0443250:intron 25.0%
!! TACAACAATATGTTTTGCTT+TGG - chr3_3:13886390-13886409 None:intergenic 25.0%
! CACATACATCATTTAATGAA+TGG - chr3_3:13886461-13886480 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr3_3:13886459-13886478 Msa0443250:intron 25.0%
!! CTTTTACTTATATTAGTGAC+CGG + chr3_3:13886533-13886552 Msa0443250:intron 25.0%
! CTATTATGCTTTGCTTATAA+AGG + chr3_3:13886589-13886608 Msa0443250:intron 25.0%
! TTTCTGTAATATCGTTGAAT+AGG - chr3_3:13887003-13887022 None:intergenic 25.0%
! ACATAAAATGGTTCGATAAT+TGG - chr3_3:13887168-13887187 None:intergenic 25.0%
! TTCATCTTGATTAGAAATTC+GGG - chr3_3:13887195-13887214 None:intergenic 25.0%
! GTTCATCTTGATTAGAAATT+CGG - chr3_3:13887196-13887215 None:intergenic 25.0%
! TTCTAATCAAGATGAACAAA+AGG + chr3_3:13887199-13887218 Msa0443250:intron 25.0%
! CATACATACATAAAGATCAA+AGG - chr3_3:13887457-13887476 None:intergenic 25.0%
!!! AATTTTAGAGTATTTGGTTG+AGG + chr3_3:13887594-13887613 Msa0443250:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr3_3:13887995-13888014 Msa0443250:intron 25.0%
!!! TCATGCTTTTAAAGAAAAAG+TGG - chr3_3:13888660-13888679 None:intergenic 25.0%
!! AGTGTGTTTATATTTTGCTA+AGG + chr3_3:13888760-13888779 Msa0443250:three_prime_UTR 25.0%
! ATATCATTGAACACAACTAA+AGG + chr3_3:13888794-13888813 Msa0443250:three_prime_UTR 25.0%
! TATTATGTCAAGGATTTCAA+AGG + chr3_3:13888859-13888878 Msa0443250:three_prime_UTR 25.0%
!!! GATTTTGGTTTGGTTTTTGA+TGG - chr3_3:13885956-13885975 None:intergenic 30.0%
!!! CCAATTATAGGATTTTGGTT+TGG - chr3_3:13885966-13885985 None:intergenic 30.0%
CCAAACCAAAATCCTATAAT+TGG + chr3_3:13885963-13885982 Msa0443250:five_prime_UTR 30.0%
! GGAGAATTTTCTTGTTGAAA+AGG - chr3_3:13886126-13886145 None:intergenic 30.0%
!! GTTAATCTTTTGTTGCTTCA+AGG - chr3_3:13886147-13886166 None:intergenic 30.0%
ATGAACTAACTTCCTTATCA+GGG - chr3_3:13886238-13886257 None:intergenic 30.0%
AATGAACTAACTTCCTTATC+AGG - chr3_3:13886239-13886258 None:intergenic 30.0%
! TTTGGTGGTTGAGAAAATTA+AGG + chr3_3:13886339-13886358 Msa0443250:intron 30.0%
!!! TTTTTCATATAGCTCTAGCA+TGG + chr3_3:13886702-13886721 Msa0443250:intron 30.0%
!!! TCTAGCATGGTTTTAAATTG+TGG + chr3_3:13886715-13886734 Msa0443250:intron 30.0%
!!! ATGGTTTTAAATTGTGGTTG+CGG + chr3_3:13886721-13886740 Msa0443250:intron 30.0%
TGAAAACAGAGTCAAAATTG+TGG + chr3_3:13886771-13886790 Msa0443250:intron 30.0%
! GTCACATATAAAGGATTTTG+AGG - chr3_3:13886822-13886841 None:intergenic 30.0%
CGTCAACACATAGAATTATA+TGG + chr3_3:13886952-13886971 Msa0443250:intron 30.0%
! TATGGTCTTAAAAGGATAGT+TGG + chr3_3:13886970-13886989 Msa0443250:intron 30.0%
!! GTAGAAAGTTCATTTGTTGT+CGG + chr3_3:13887026-13887045 Msa0443250:intron 30.0%
!! AATTCGGGTTGTACATAAAA+TGG - chr3_3:13887180-13887199 None:intergenic 30.0%
GACAAATATATATTCAGTCG+AGG + chr3_3:13887373-13887392 Msa0443250:CDS 30.0%
ACATGCTCAACAAAATCAAA+GGG - chr3_3:13887491-13887510 None:intergenic 30.0%
TACATGCTCAACAAAATCAA+AGG - chr3_3:13887492-13887511 None:intergenic 30.0%
AGTATTTGGTTGAGGAAAAA+TGG + chr3_3:13887602-13887621 Msa0443250:intron 30.0%
ATAGGAGCAAAATTTGAATC+AGG - chr3_3:13887659-13887678 None:intergenic 30.0%
! AATTTTGCTCCTATCAAATG+TGG + chr3_3:13887665-13887684 Msa0443250:intron 30.0%
! ATTTTGCTCCTATCAAATGT+GGG + chr3_3:13887666-13887685 Msa0443250:intron 30.0%
GTAATACAAAAATCACGGTT+TGG + chr3_3:13887764-13887783 Msa0443250:intron 30.0%
TTTAAGGACCTAGATTCATA+AGG - chr3_3:13888075-13888094 None:intergenic 30.0%
! CTAGGTCCTTAAATTTTCTA+TGG + chr3_3:13888082-13888101 Msa0443250:intron 30.0%
AGAACGCCATAGAAAATTTA+AGG - chr3_3:13888091-13888110 None:intergenic 30.0%
TTGATGTAGTAACTAAGTGA+TGG - chr3_3:13888337-13888356 None:intergenic 30.0%
TTGAACAGATAATGATGTAC+CGG - chr3_3:13888530-13888549 None:intergenic 30.0%
AATATGAGCTTAGGTATACA+AGG + chr3_3:13888704-13888723 Msa0443250:three_prime_UTR 30.0%
TAAAGCAATGTTTCAAAAGC+CGG + chr3_3:13888884-13888903 Msa0443250:three_prime_UTR 30.0%
TTCAAACATGTAATGTGACT+GGG - chr3_3:13888970-13888989 None:intergenic 30.0%
TGTTTGAACTGGAATTGAAA+TGG + chr3_3:13888982-13889001 Msa0443250:three_prime_UTR 30.0%
GTTTGAACTGGAATTGAAAT+GGG + chr3_3:13888983-13889002 Msa0443250:three_prime_UTR 30.0%
TGATGGAGAAAGAAGGTTTA+TGG - chr3_3:13885939-13885958 None:intergenic 35.0%
! TGGTTTTTGATGGAGAAAGA+AGG - chr3_3:13885946-13885965 None:intergenic 35.0%
TTCTGAGTCTGATTGTAATG+AGG + chr3_3:13886202-13886221 Msa0443250:CDS 35.0%
TGAACTAACTTCCTTATCAG+GGG - chr3_3:13886237-13886256 None:intergenic 35.0%
!!! ACTTGGTATGTTTTGTTTGG+TGG + chr3_3:13886324-13886343 Msa0443250:intron 35.0%
TTGTTGTAACATACACCCTT+CGG + chr3_3:13886402-13886421 Msa0443250:intron 35.0%
TGCTTATAATAGTGACCGAA+GGG - chr3_3:13886420-13886439 None:intergenic 35.0%
TTGCTTATAATAGTGACCGA+AGG - chr3_3:13886421-13886440 None:intergenic 35.0%
TTACTTATATTAGTGACCGG+AGG + chr3_3:13886536-13886555 Msa0443250:intron 35.0%
TACTTATATTAGTGACCGGA+GGG + chr3_3:13886537-13886556 Msa0443250:intron 35.0%
ACAATGAAAAATACACCCTC+CGG - chr3_3:13886555-13886574 None:intergenic 35.0%
AGCAAAGCATAATAGCTACT+TGG - chr3_3:13886584-13886603 None:intergenic 35.0%
GCAAATGCAGTCACATATAA+AGG - chr3_3:13886831-13886850 None:intergenic 35.0%
ACTACTACTACTACAATCCA+TGG - chr3_3:13886876-13886895 None:intergenic 35.0%
TATGTTGAAAAGGATACTGC+TGG + chr3_3:13887347-13887366 Msa0443250:CDS 35.0%
ATTTGGTTGAGGAAAAATGG+AGG + chr3_3:13887605-13887624 Msa0443250:intron 35.0%
TTTGGTTGAGGAAAAATGGA+GGG + chr3_3:13887606-13887625 Msa0443250:intron 35.0%
! TTTTGCTCCTATCAAATGTG+GGG + chr3_3:13887667-13887686 Msa0443250:intron 35.0%
AAATCTTCCCCACATTTGAT+AGG - chr3_3:13887677-13887696 None:intergenic 35.0%
TATCAAATGTGGGGAAGATT+TGG + chr3_3:13887676-13887695 Msa0443250:intron 35.0%
!!! GTTGTTTTTGTAAGCTCTCT+TGG + chr3_3:13887875-13887894 Msa0443250:intron 35.0%
AGTATAACCACTTGTGAAAC+TGG - chr3_3:13887964-13887983 None:intergenic 35.0%
AAGTGATGCCTTATGAATCT+AGG + chr3_3:13888064-13888083 Msa0443250:intron 35.0%
TCATCAATACTTCTACAGGT+TGG + chr3_3:13888268-13888287 Msa0443250:CDS 35.0%
AGATGATGATAGAACAGTCT+CGG - chr3_3:13888485-13888504 None:intergenic 35.0%
GCTTAGGTATACAAGGTTAA+TGG + chr3_3:13888711-13888730 Msa0443250:three_prime_UTR 35.0%
AGGTATACAAGGTTAATGGA+TGG + chr3_3:13888715-13888734 Msa0443250:three_prime_UTR 35.0%
GTTCAAACATGTAATGTGAC+TGG - chr3_3:13888971-13888990 None:intergenic 35.0%
GTCACATTACATGTTTGAAC+TGG + chr3_3:13888971-13888990 Msa0443250:three_prime_UTR 35.0%
GTGTGTGTGTGTGTTAAGAT+GGG - chr3_3:13885907-13885926 None:intergenic 40.0%
TGTGTGTGTGTGTGTTAAGA+TGG - chr3_3:13885908-13885927 None:intergenic 40.0%
! TGTTGAAAAGGCACATGTGT+TGG - chr3_3:13886114-13886133 None:intergenic 40.0%
TGCAATTGCAATGTTGTTGC+AGG + chr3_3:13886795-13886814 Msa0443250:intron 40.0%
TGTGACTGCATTTGCAATTG+CGG + chr3_3:13886836-13886855 Msa0443250:intron 40.0%
CGGACTGCAATTTATAACCA+TGG + chr3_3:13886856-13886875 Msa0443250:intron 40.0%
AGAAGCTAATCCTCTGTTGA+TGG + chr3_3:13887226-13887245 Msa0443250:intron 40.0%
!! TGTTGATGGTGATGTAGGTT+GGG + chr3_3:13887240-13887259 Msa0443250:intron 40.0%
GAGGAGAAGACAAAAGTAGT+AGG + chr3_3:13887287-13887306 Msa0443250:CDS 40.0%
TTGGACAGGCTATGTTGAAA+AGG + chr3_3:13887337-13887356 Msa0443250:CDS 40.0%
AAATGTGGGGAAGATTTGGA+TGG + chr3_3:13887680-13887699 Msa0443250:intron 40.0%
!! GCAGAAAGTGCTATAAGTTC+AGG + chr3_3:13888163-13888182 Msa0443250:CDS 40.0%
GCTATAAGTTCAGGAACATC+TGG + chr3_3:13888172-13888191 Msa0443250:CDS 40.0%
!! ACATCTGGTTCTTCTTCTGA+TGG + chr3_3:13888187-13888206 Msa0443250:CDS 40.0%
!! TAGAAGTATTGATGATGCCG+CGG - chr3_3:13888263-13888282 None:intergenic 40.0%
GGCATCATCAATACTTCTAC+AGG + chr3_3:13888264-13888283 Msa0443250:CDS 40.0%
! TATTCGACTTTTTGGACCTG+AGG - chr3_3:13888307-13888326 None:intergenic 40.0%
GTCCAAAAAGTCGAATACTC+CGG + chr3_3:13888310-13888329 Msa0443250:CDS 40.0%
TCCAAAAAGTCGAATACTCC+GGG + chr3_3:13888311-13888330 Msa0443250:CDS 40.0%
! TGATGATGATAGCTCTGTCT+CGG - chr3_3:13888404-13888423 None:intergenic 40.0%
! AGATAATGATGTACCGGTCT+CGG - chr3_3:13888524-13888543 None:intergenic 40.0%
! AACTTCTGCAGGAGAGTTTT+CGG - chr3_3:13888554-13888573 None:intergenic 40.0%
TGAACTTGAGAAACTTCTGC+AGG - chr3_3:13888565-13888584 None:intergenic 40.0%
GATTAAACCAACTGACGAAC+GGG - chr3_3:13888948-13888967 None:intergenic 40.0%
GGATTAAACCAACTGACGAA+CGG - chr3_3:13888949-13888968 None:intergenic 40.0%
GTGTTAAGATGGGTGGTTTG+TGG - chr3_3:13885897-13885916 None:intergenic 45.0%
TGTGTGTGTGTTAAGATGGG+TGG - chr3_3:13885904-13885923 None:intergenic 45.0%
!! GGCACATGTGTTGGTTGTTA+TGG - chr3_3:13886105-13886124 None:intergenic 45.0%
!! TCCTCTGTTGATGGTGATGT+AGG + chr3_3:13887235-13887254 Msa0443250:intron 45.0%
ACCTACATCACCATCAACAG+AGG - chr3_3:13887239-13887258 None:intergenic 45.0%
!! CTGTTGATGGTGATGTAGGT+TGG + chr3_3:13887239-13887258 Msa0443250:intron 45.0%
TTGGGAAGGTGAGTATGGAA+TGG + chr3_3:13887258-13887277 Msa0443250:CDS 45.0%
GAGTATGGAATGGTTAGCAG+AGG + chr3_3:13887268-13887287 Msa0443250:CDS 45.0%
GTTGAGGAAAAATGGAGGGA+GGG + chr3_3:13887610-13887629 Msa0443250:intron 45.0%
TTGAGGAAAAATGGAGGGAG+GGG + chr3_3:13887611-13887630 Msa0443250:intron 45.0%
TTGTAAGCTCTCTTGGTCCT+TGG + chr3_3:13887882-13887901 Msa0443250:intron 45.0%
CTCTCAACCAGTTTCACAAG+TGG + chr3_3:13887954-13887973 Msa0443250:intron 45.0%
AGCATGACTTTGTGCCTGTT+TGG - chr3_3:13888012-13888031 None:intergenic 45.0%
! CATAAACTGCTGGCTGGAAA+AGG - chr3_3:13888141-13888160 None:intergenic 45.0%
TTTCCAGCCAGCAGTTTATG+TGG + chr3_3:13888141-13888160 Msa0443250:intron 45.0%
CTTTCTGCCACATAAACTGC+TGG - chr3_3:13888151-13888170 None:intergenic 45.0%
TGGTAAGAATTCTCCTCCTC+AGG + chr3_3:13888288-13888307 Msa0443250:CDS 45.0%
GTAGTAACTAAGTGATGGCC+CGG - chr3_3:13888332-13888351 None:intergenic 45.0%
AGATACGATGTCCACACTTG+AGG - chr3_3:13888614-13888633 None:intergenic 45.0%
CAGCCGGTTGAATTGTGAAT+TGG + chr3_3:13888922-13888941 Msa0443250:three_prime_UTR 45.0%
GGGCCAATTCACAATTCAAC+CGG - chr3_3:13888928-13888947 None:intergenic 45.0%
GGAAGAATGTGCCCCTGATA+AGG + chr3_3:13886223-13886242 Msa0443250:CDS 50.0%
! GATGGTGATGTAGGTTGGGA+AGG + chr3_3:13887244-13887263 Msa0443250:intron 50.0%
! GTAGGTTGGGAAGGTGAGTA+TGG + chr3_3:13887253-13887272 Msa0443250:intron 50.0%
ATATCCACCACGTCGTAAGC+AGG + chr3_3:13887313-13887332 Msa0443250:CDS 50.0%
TATCCACCACGTCGTAAGCA+GGG + chr3_3:13887314-13887333 Msa0443250:CDS 50.0%
GGTTGAGGAAAAATGGAGGG+AGG + chr3_3:13887609-13887628 Msa0443250:intron 50.0%
GGGGAAGATTTGGATGGAAG+AGG + chr3_3:13887686-13887705 Msa0443250:intron 50.0%
CAGAACACAGCAGCAATTGC+TGG + chr3_3:13888214-13888233 Msa0443250:CDS 50.0%
AACACAGCAGCAATTGCTGG+TGG + chr3_3:13888217-13888236 Msa0443250:CDS 50.0%
! TGCACTGATCTCAATTGCCG+CGG + chr3_3:13888243-13888262 Msa0443250:CDS 50.0%
! TCGACTTTTTGGACCTGAGG+AGG - chr3_3:13888304-13888323 None:intergenic 50.0%
!! GCCCGGAGTATTCGACTTTT+TGG - chr3_3:13888315-13888334 None:intergenic 50.0%
!! TCAACCTGAGAGCACTGAGA+CGG + chr3_3:13888429-13888448 Msa0443250:CDS 50.0%
!! TAGAACAGTCTCGGTGCTCT+CGG - chr3_3:13888476-13888495 None:intergenic 50.0%
ATGTCCACACTTGAGGTCTC+TGG - chr3_3:13888607-13888626 None:intergenic 50.0%
TTTCAAAAGCCGGACCGAGT+AGG + chr3_3:13888894-13888913 Msa0443250:three_prime_UTR 50.0%
AAAATGGAGGGAGGGGACTC+AGG + chr3_3:13887618-13887637 Msa0443250:intron 55.0%
AAATGGAGGGAGGGGACTCA+GGG + chr3_3:13887619-13887638 Msa0443250:intron 55.0%
CTGCCACATAAACTGCTGGC+TGG - chr3_3:13888147-13888166 None:intergenic 55.0%
! TAGCTCTGTCTCGGCTGTCA+CGG - chr3_3:13888395-13888414 None:intergenic 55.0%
AGTACCGTCTCAGTGCTCTC+AGG - chr3_3:13888436-13888455 None:intergenic 55.0%
!! AGAACAGTCTCGGTGCTCTC+GGG - chr3_3:13888475-13888494 None:intergenic 55.0%
TCAGCCAGAGACCTCAAGTG+TGG + chr3_3:13888600-13888619 Msa0443250:CDS 55.0%
AACCGGCTGAACTGCCTACT+CGG - chr3_3:13888911-13888930 None:intergenic 55.0%
GAATTGGCCCGTTCGTCAGT+TGG + chr3_3:13888938-13888957 Msa0443250:three_prime_UTR 55.0%
CAACCCTGCTTACGACGTGG+TGG - chr3_3:13887320-13887339 None:intergenic 60.0%
CACCACGTCGTAAGCAGGGT+TGG + chr3_3:13887318-13887337 Msa0443250:CDS 60.0%
GTCCAACCCTGCTTACGACG+TGG - chr3_3:13887323-13887342 None:intergenic 60.0%
CGTCGTAAGCAGGGTTGGAC+AGG + chr3_3:13887323-13887342 Msa0443250:CDS 60.0%
TCTGTCTCGGCTGTCACGGA+AGG - chr3_3:13888391-13888410 None:intergenic 60.0%
!! TGTACCGGTCTCGGTGCTCT+CGG - chr3_3:13888515-13888534 None:intergenic 60.0%
GCTGAACTGCCTACTCGGTC+CGG - chr3_3:13888906-13888925 None:intergenic 60.0%
GACCGAGTAGGCAGTTCAGC+CGG + chr3_3:13888906-13888925 Msa0443250:three_prime_UTR 60.0%
GAGGGAGGGGACTCAGGGTA+GGG + chr3_3:13887624-13887643 Msa0443250:intron 65.0%
!! CAACCCGAGAGCACCGAGAC+CGG + chr3_3:13888469-13888488 Msa0443250:CDS 65.0%
!! GTACCGGTCTCGGTGCTCTC+GGG - chr3_3:13888514-13888533 None:intergenic 65.0%
GGAGGGAGGGGACTCAGGGT+AGG + chr3_3:13887623-13887642 Msa0443250:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 13885874 13889054 13885874 ID=Msa0443250;Name=Msa0443250
chr3_3 mRNA 13885874 13889054 13885874 ID=Msa0443250-mRNA-1;Parent=Msa0443250;Name=Msa0443250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=206|1|1|1|1|1|3|418|264
chr3_3 exon 13885874 13886247 13885874 ID=Msa0443250-mRNA-1:exon:3056;Parent=Msa0443250-mRNA-1
chr3_3 exon 13887257 13887394 13887257 ID=Msa0443250-mRNA-1:exon:3057;Parent=Msa0443250-mRNA-1
chr3_3 exon 13888148 13889054 13888148 ID=Msa0443250-mRNA-1:exon:3058;Parent=Msa0443250-mRNA-1
chr3_3 five_prime_UTR 13885874 13886079 13885874 ID=Msa0443250-mRNA-1:five_prime_utr;Parent=Msa0443250-mRNA-1
chr3_3 CDS 13886080 13886247 13886080 ID=Msa0443250-mRNA-1:cds;Parent=Msa0443250-mRNA-1
chr3_3 CDS 13887257 13887394 13887257 ID=Msa0443250-mRNA-1:cds;Parent=Msa0443250-mRNA-1
chr3_3 CDS 13888148 13888636 13888148 ID=Msa0443250-mRNA-1:cds;Parent=Msa0443250-mRNA-1
chr3_3 three_prime_UTR 13888637 13889054 13888637 ID=Msa0443250-mRNA-1:three_prime_utr;Parent=Msa0443250-mRNA-1
Gene Sequence

>Msa0443250

ATGGCTTGTGCATTGCAAGCTACCATAACAACCAACACATGTGCCTTTTCAACAAGAAAATTCTCCTTGAAGCAACAAAAGATTAACAAGAGAAGTTCATGCATGTTTATTGTTAGAGCTTCTTCTGAGTCTGATTGTAATGAGGAAGAATGTGCCCCTGATAAGGAAGTTGGGAAGGTGAGTATGGAATGGTTAGCAGAGGAGAAGACAAAAGTAGTAGGTACATATCCACCACGTCGTAAGCAGGGTTGGACAGGCTATGTTGAAAAGGATACTGCTGGACAGACAAATATATATTCAGTCGAGCCAGCAGTTTATGTGGCAGAAAGTGCTATAAGTTCAGGAACATCTGGTTCTTCTTCTGATGGAGCTCAGAACACAGCAGCAATTGCTGGTGGTCTTGCACTGATCTCAATTGCCGCGGCATCATCAATACTTCTACAGGTTGGTAAGAATTCTCCTCCTCAGGTCCAAAAAGTCGAATACTCCGGGCCATCACTTAGTTACTACATCAACGAGTTCAAAACACAAGAAATTACTCAAGCGCCTTCCGTGACAGCCGAGACAGAGCTATCATCATCATCTGCTCAACCTGAGAGCACTGAGACGGTACTATCATCATCTGTTCAACCCGAGAGCACCGAGACTGTTCTATCATCATCTGTTCAACCCGAGAGCACCGAGACCGGTACATCATTATCTGTTCAAACCGAAAACTCTCCTGCAGAAGTTTCTCAAGTTCAAGTTGAATCTCAAATTCAGCCAGAGACCTCAAGTGTGGACATCGTATCTTAA

Protein sequence

>Msa0443250

MACALQATITTNTCAFSTRKFSLKQQKINKRSSCMFIVRASSESDCNEEECAPDKEVGKVSMEWLAEEKTKVVGTYPPRRKQGWTGYVEKDTAGQTNIYSVEPAVYVAESAISSGTSGSSSDGAQNTAAIAGGLALISIAAASSILLQVGKNSPPQVQKVEYSGPSLSYYINEFKTQEITQAPSVTAETELSSSSAQPESTETVLSSSVQPESTETVLSSSVQPESTETGTSLSVQTENSPAEVSQVQVESQIQPETSSVDIVS*