AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0822800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822800 MtrunA17_Chr5g0443091 98.677 1058 13 1 1 1057 1 1058 0.0 2156
Msa0822800 MtrunA17_Chr3g0096241 81.096 1058 186 7 1 1056 1 1046 0.0 1763
Msa0822800 MtrunA17_Chr4g0064501 56.308 1078 412 20 1 1048 1 1049 0.0 1147
Msa0822800 MtrunA17_Chr3g0109841 27.437 554 319 21 171 693 286 787 4.26e-41 163
Msa0822800 MtrunA17_Chr6g0481131 26.437 522 320 19 171 677 285 757 2.90e-37 151
Msa0822800 MtrunA17_Chr1g0195241 26.015 542 332 19 171 688 264 760 3.67e-37 150
Msa0822800 MtrunA17_Chr6g0481171 26.415 530 310 20 171 677 157 629 5.41e-37 150
Msa0822800 MtrunA17_Chr2g0301621 25.843 534 314 21 171 672 277 760 1.95e-36 148
Msa0822800 MtrunA17_Chr5g0433761 26.062 518 316 19 171 663 283 758 1.96e-35 145
Msa0822800 MtrunA17_Chr4g0070011 24.723 542 310 20 171 672 279 762 8.40e-35 143
Msa0822800 MtrunA17_Chr7g0269581 25.145 517 322 17 171 663 279 754 1.89e-34 142
Msa0822800 MtrunA17_Chr6g0481261 43.529 85 42 2 569 653 24 102 4.02e-14 69.3
Msa0822800 MtrunA17_Chr6g0481241 52.459 61 29 0 569 629 24 84 1.61e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822800 AT1G04920.1 73.102 1067 267 11 1 1054 1 1060 0.0 1599
Msa0822800 AT4G10120.2 57.103 1070 390 13 1 1038 1 1033 0.0 1189
Msa0822800 AT4G10120.3 57.103 1070 390 13 1 1038 1 1033 0.0 1189
Msa0822800 AT4G10120.1 57.103 1070 390 13 1 1038 1 1033 0.0 1189
Msa0822800 AT5G20280.1 56.901 1065 418 18 1 1051 1 1038 0.0 1172
Msa0822800 AT5G11110.1 55.597 1072 429 17 1 1054 1 1043 0.0 1143
Msa0822800 AT4G10120.4 58.705 896 326 10 150 1038 1 859 0.0 1038
Msa0822800 AT4G10120.5 59.033 869 313 9 176 1038 1 832 0.0 1014
Msa0822800 AT1G73370.3 26.527 524 306 17 171 663 285 760 9.56e-39 157
Msa0822800 AT1G73370.1 26.527 524 306 17 171 663 285 760 9.56e-39 157
Msa0822800 AT1G73370.2 26.527 524 306 17 171 663 241 716 9.64e-39 157
Msa0822800 AT5G49190.3 25.714 525 327 16 171 672 212 696 2.38e-38 154
Msa0822800 AT5G49190.2 25.714 525 327 16 171 672 268 752 3.20e-38 154
Msa0822800 AT5G49190.1 25.714 525 327 16 171 672 278 762 3.48e-38 154
Msa0822800 AT4G02280.1 26.577 523 325 20 171 672 281 765 1.15e-35 146
Msa0822800 AT5G20830.3 26.236 526 322 20 171 672 281 764 1.77e-35 146
Msa0822800 AT5G20830.2 26.236 526 322 20 171 672 281 764 1.77e-35 146
Msa0822800 AT5G20830.1 26.236 526 322 20 171 672 281 764 1.77e-35 146
Msa0822800 AT3G43190.2 25.788 539 308 20 171 672 281 764 2.26e-35 145
Msa0822800 AT3G43190.1 25.788 539 308 20 171 672 281 764 2.26e-35 145
Msa0822800 AT5G37180.3 26.448 518 314 21 171 663 29 504 1.26e-34 141
Msa0822800 AT5G37180.2 26.448 518 314 21 171 663 87 562 1.95e-34 141
Msa0822800 AT5G37180.1 25.926 540 329 22 171 685 275 768 5.52e-34 141

Find 264 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAAAGTTTGTGATTAA+TGG 0.148259 5_3:+61177428 Msa0822800:exon
CATCTCTGTTTCCCATTATA+AGG 0.149024 5_3:-61180439 None:intergenic
AGAACATGTGTTGGCGTATT+TGG 0.175840 5_3:+61177691 Msa0822800:CDS
GACAGTGCTGCTCTTCTTTC+GGG 0.187244 5_3:+61179182 Msa0822800:CDS
CCTCAAACTGCAAGAGTTTC+GGG 0.218308 5_3:+61181561 Msa0822800:CDS
CAAAAGCGTTACCTTCAATT+TGG 0.220963 5_3:+61179854 Msa0822800:CDS
ACAACTCTATTAAAGGCTTT+TGG 0.226121 5_3:+61180285 Msa0822800:CDS
TCAGATTGTCTATGATGTTT+AGG 0.234949 5_3:-61180554 None:intergenic
AGAGTTGTTATGTTCTTCTT+TGG 0.246298 5_3:-61180270 None:intergenic
TGCATTCTTACCGCCATTCT+AGG 0.250617 5_3:-61179494 None:intergenic
GAGAGATCTCCGTCGACTTC+AGG 0.253821 5_3:-61179799 None:intergenic
GACATAGAAGATATGTCTTC+TGG 0.259658 5_3:+61180461 Msa0822800:CDS
TTCTAAACAGACCCTTATAA+TGG 0.264832 5_3:+61180427 Msa0822800:intron
GATTACGAGGAAATGATTTC+TGG 0.266581 5_3:+61182401 Msa0822800:CDS
GAACATAACAACTCTATTAA+AGG 0.269752 5_3:+61180278 Msa0822800:CDS
ATTAGTCTCTTCACCATTAG+AGG 0.273238 5_3:-61181817 None:intergenic
TCCCTTAGGCTTTCAATTGA+TGG 0.275388 5_3:+61181288 Msa0822800:CDS
CAAATTGAAGGTAACGCTTT+TGG 0.275946 5_3:-61179853 None:intergenic
TGACAGTGCTGCTCTTCTTT+CGG 0.280821 5_3:+61179181 Msa0822800:CDS
TTGAAGCAACTTTCAAAATC+TGG 0.289138 5_3:+61182581 Msa0822800:CDS
CAGATTGTCTATGATGTTTA+GGG 0.292808 5_3:-61180553 None:intergenic
CCCTCAAACTGCAAGAGTTT+CGG 0.299924 5_3:+61181560 Msa0822800:CDS
CAAACAAATACCCTCTATTA+AGG 0.300652 5_3:+61181427 Msa0822800:CDS
TTTCATAAATCCTGCTTTAG+TGG 0.303018 5_3:+61180704 Msa0822800:CDS
AATATGGTCTGATGATAAAA+AGG 0.307414 5_3:+61178240 Msa0822800:CDS
CAATGTCAGGAGATGATATT+TGG 0.309731 5_3:-61178878 None:intergenic
ATCTTGAGAAAGAACTTCTT+TGG 0.310014 5_3:+61179027 Msa0822800:CDS
CATGAAAGGAGTTGTGTCTA+AGG 0.320713 5_3:+61182442 Msa0822800:CDS
TTCAATTTCCATTCTATACT+TGG 0.320948 5_3:-61182675 None:intergenic
TCATCTCTTTGGTAGCTTCC+TGG 0.321337 5_3:-61182488 None:intergenic
GTTATGTTCTTCTTTGGATC+TGG 0.322685 5_3:-61180264 None:intergenic
ATCTCAATCAACTTCTTATC+AGG 0.328143 5_3:-61181504 None:intergenic
GAGAAAAGGGAGATGGCATT+GGG 0.330516 5_3:+61178158 Msa0822800:CDS
ATTGACAAATATGACCTATA+TGG 0.346454 5_3:+61180518 Msa0822800:CDS
AACTTTATATTATCCTCTTA+AGG 0.347172 5_3:+61178269 Msa0822800:CDS
GCAAACATGTATGTCATTCT+TGG 0.348150 5_3:+61182362 Msa0822800:CDS
GTCTTTCAATGATTCACTTA+AGG 0.350306 5_3:+61181251 Msa0822800:CDS
TTGGTACAACATCATCTCTT+TGG 0.351129 5_3:-61182499 None:intergenic
GCGGACCGGTTGACATTAAT+CGG 0.352075 5_3:+61180880 Msa0822800:CDS
CCTGCTTTAGTGGAACCTTT+TGG 0.355668 5_3:+61180714 Msa0822800:CDS
CACATTCAAGAATTTGTAGA+TGG 0.366199 5_3:+61179053 Msa0822800:CDS
GCTGGTAATGAGTGGATTAA+TGG 0.367627 5_3:+61177450 Msa0822800:CDS
ATGCTTCTAGCCAGGAAATA+TGG 0.370871 5_3:+61178224 Msa0822800:CDS
CCCGAAACTCTTGCAGTTTG+AGG 0.372398 5_3:-61181561 None:intergenic
TAAGTTGTTACTTACAAGAT+TGG 0.373603 5_3:-61180334 None:intergenic
CTCAACATGTCAAAAGTATT+GGG 0.373778 5_3:+61179092 Msa0822800:CDS
TATCATCAGACCATATTTCC+TGG 0.374293 5_3:-61178234 None:intergenic
ATCTCTGTTTCCCATTATAA+GGG 0.375269 5_3:-61180438 None:intergenic
GGAGATCTCTCACAGCTTAC+TGG 0.381308 5_3:+61179811 Msa0822800:CDS
TAAGAATAATATACCTTAAG+AGG 0.382181 5_3:-61178282 None:intergenic
CTTTGGATCTGGCCTTGATA+AGG 0.382917 5_3:-61180253 None:intergenic
TATCATCTCCTGACATTGAT+TGG 0.383843 5_3:+61178883 Msa0822800:CDS
CATTGTTATACGTAGGGGTC+GGG 0.391355 5_3:-61182871 None:intergenic
TCTTCATCGTACATGGCTTA+AGG 0.392250 5_3:+61177626 Msa0822800:CDS
GGAGAAAAGGGAGATGGCAT+TGG 0.398420 5_3:+61178157 Msa0822800:CDS
ACAAGAAATTGATGAACAAT+GGG 0.399161 5_3:+61179385 Msa0822800:CDS
CTTGATAAGGCTAATATCAT+AGG 0.399864 5_3:-61180240 None:intergenic
TCTAAACAGACCCTTATAAT+GGG 0.402227 5_3:+61180428 Msa0822800:intron
TCTCAACATGTCAAAAGTAT+TGG 0.402734 5_3:+61179091 Msa0822800:CDS
AGGATCTCCATTACTGTCAT+AGG 0.406341 5_3:-61181484 None:intergenic
ACAACGGAATTTCTAGCATC+TGG 0.418673 5_3:+61181618 Msa0822800:CDS
TTTATACAGTTTGCATGGAT+TGG 0.418964 5_3:+61178656 Msa0822800:intron
TTCTCCTTCCGACAACTCTT+CGG 0.419102 5_3:-61178140 None:intergenic
CTTGGTAGAGATTCTGATAC+TGG 0.420188 5_3:+61178699 Msa0822800:CDS
CTCACTTCTAACCAAATTGA+AGG 0.421384 5_3:-61179865 None:intergenic
GAAGAATTGCTTAGAGGTCC+AGG 0.427119 5_3:+61182470 Msa0822800:CDS
AGAGTTGTCGGAAGGAGAAA+AGG 0.429412 5_3:+61178144 Msa0822800:CDS
CCGAAACTCTTGCAGTTTGA+GGG 0.429535 5_3:-61181560 None:intergenic
ATGCTATAGTTTGTAGTAGT+GGG 0.429593 5_3:+61181664 Msa0822800:CDS
TAAATTTCACTTACCTTGCT+AGG 0.433136 5_3:-61181915 None:intergenic
TATGTCATTCTTGGAGAAAC+CGG 0.434715 5_3:+61182371 Msa0822800:CDS
CCGTCTTCTGTGTGAACACC+AGG 0.435238 5_3:-61181702 None:intergenic
AAGATAAGGAAGCAAGATTC+TGG 0.437232 5_3:+61181369 Msa0822800:CDS
CGTGCACTTGCGAAAACGGC+AGG 0.437903 5_3:+61178828 Msa0822800:CDS
AAAGGTTAGCATACAGAAGA+TGG 0.439924 5_3:+61178077 Msa0822800:CDS
AAATAAGTTCGGCAGTGTTC+AGG 0.443986 5_3:-61181150 None:intergenic
AAACTTATGAATGCCTCTAA+TGG 0.444514 5_3:+61181804 Msa0822800:CDS
CACCATCAATTGAAAGCCTA+AGG 0.446507 5_3:-61181290 None:intergenic
TGCTCGTGCACTTGCGAAAA+CGG 0.448989 5_3:+61178824 Msa0822800:CDS
GCAACAAGAGCACTCTCATT+TGG 0.450352 5_3:-61182518 None:intergenic
CACCCTTTGCTGCTCTTCCA+CGG 0.450640 5_3:-61177517 None:intergenic
CAGCTTACTGGTGTTGCTGA+TGG 0.460077 5_3:+61179823 Msa0822800:CDS
AGTGCATATAGATTATCGTT+GGG 0.460909 5_3:+61181752 Msa0822800:CDS
AGAAGCAGAGGAGCTTTCCT+TGG 0.461828 5_3:+61179331 Msa0822800:CDS
GGATTTGTCCGAAGAGTTGT+CGG 0.463661 5_3:+61178132 Msa0822800:CDS
GATTATCGTTGGGGCGTTGA+AGG 0.463785 5_3:+61181762 Msa0822800:CDS
TGTTTCTGCACTCATGCCAT+AGG 0.464242 5_3:-61181095 None:intergenic
ATGATAGCACTGGAGAGAGC+AGG 0.465838 5_3:+61178961 Msa0822800:CDS
TCTTCTTGCATCTAGAGCTC+AGG 0.469294 5_3:+61182182 Msa0822800:CDS
GTGTGGCCTTATGTGATTCA+TGG 0.471189 5_3:+61179140 Msa0822800:CDS
ACATAGAAGATATGTCTTCT+GGG 0.471270 5_3:+61180462 Msa0822800:CDS
TGCACTGAATAATCTTGATC+AGG 0.471311 5_3:-61181735 None:intergenic
TCATCCTCATCATTATCATC+TGG 0.472516 5_3:-61178942 None:intergenic
AGTGTTCAGGCCACGAGAAA+AGG 0.473744 5_3:-61181137 None:intergenic
ATGACTTGAGGCAAAAGCTT+CGG 0.474230 5_3:+61182097 Msa0822800:CDS
TGAATTCAGTCAAAATGCTC+CGG 0.477170 5_3:+61182728 Msa0822800:three_prime_UTR
GCAGGTTATCCCTCCTGGTA+TGG 0.477625 5_3:+61179744 Msa0822800:intron
CCTGACATTGATTGGAGCTA+TGG 0.477858 5_3:+61178891 Msa0822800:CDS
ATATTTATCGCGTGGACCGA+AGG 0.480496 5_3:-61179006 None:intergenic
TTTCCGCAGGTTATCCCTCC+TGG 0.481354 5_3:+61179739 Msa0822800:intron
TCAATTAAAGTAAGACCAAA+AGG 0.482267 5_3:-61180729 None:intergenic
CTGCGCCTTCGCCTTAATAG+AGG 0.484197 5_3:-61181438 None:intergenic
GGTTCAGAAGAATTGCTTAG+AGG 0.485444 5_3:+61182464 Msa0822800:CDS
ATTACCCGATTAATGTCAAC+CGG 0.487566 5_3:-61180885 None:intergenic
TTAGGTATTTGTTCGTCCGT+TGG 0.493392 5_3:+61182327 Msa0822800:intron
GAACAATGGGGACTTTATGA+TGG 0.496188 5_3:+61179398 Msa0822800:CDS
TCTAATGGTGAAGAGACTAA+TGG 0.498215 5_3:+61181819 Msa0822800:CDS
GACAAGAAATTGATGAACAA+TGG 0.498509 5_3:+61179384 Msa0822800:CDS
AATTGACGCCACGCCTATCA+CGG 0.500584 5_3:-61179454 None:intergenic
GAAAGTTTGTGATTAATGGC+TGG 0.501296 5_3:+61177432 Msa0822800:exon
CCAAAAGGTTCCACTAAAGC+AGG 0.501308 5_3:-61180714 None:intergenic
TGCTTAAGACACGTTTCACT+TGG 0.502370 5_3:-61181347 None:intergenic
AGAGATCTCCGTCGACTTCA+GGG 0.502979 5_3:-61179798 None:intergenic
AGTTGATATCCTCCCACGAT+TGG 0.502981 5_3:-61179283 None:intergenic
GCAGCAAATCTATATATCTC+AGG 0.507709 5_3:-61180581 None:intergenic
GACAAGTTCTGCAGCATCCA+AGG 0.508190 5_3:-61179348 None:intergenic
CCATAGCTCCAATCAATGTC+AGG 0.508672 5_3:-61178891 None:intergenic
TGAAAGTTGCTTCAATGCGT+TGG 0.509645 5_3:-61182573 None:intergenic
AACAATGGGGACTTTATGAT+GGG 0.512391 5_3:+61179399 Msa0822800:CDS
GTTCTCACTGGTCATTCACT+TGG 0.513001 5_3:+61179224 Msa0822800:CDS
GTTGTCATCCTATGTACTGC+AGG 0.513171 5_3:+61182133 Msa0822800:CDS
ATCTTTATGTAATGAAGAGA+AGG 0.514988 5_3:-61177297 None:intergenic
CTTGATTCCTATGACAGTAA+TGG 0.516100 5_3:+61181477 Msa0822800:CDS
GAGTTGTCGGAAGGAGAAAA+GGG 0.516117 5_3:+61178145 Msa0822800:CDS
TCAGAGGCATGCTTCTAGCC+AGG 0.517688 5_3:+61178216 Msa0822800:CDS
CAGTGCATATAGATTATCGT+TGG 0.519827 5_3:+61181751 Msa0822800:CDS
TGATAGCACTGGAGAGAGCA+GGG 0.520652 5_3:+61178962 Msa0822800:CDS
TTCCTCGTAATCAGTGTCCC+CGG 0.523537 5_3:-61182390 None:intergenic
AGAAAAGGGAGATGGCATTG+GGG 0.525201 5_3:+61178159 Msa0822800:CDS
TAGTGTCCATGAATCACATA+AGG 0.526558 5_3:-61179146 None:intergenic
TCTTGCTCGCAAGAAGAAGA+AGG 0.528534 5_3:+61177716 Msa0822800:CDS
CAACTCTTCGGACAAATCCT+CGG 0.528689 5_3:-61178128 None:intergenic
AGTCTGATCTTCATCGTACA+TGG 0.529444 5_3:+61177619 Msa0822800:CDS
GGAAGAGCAGCAAAGGGTGG+CGG 0.531056 5_3:+61177521 Msa0822800:CDS
CTCTATTAAGGCGAAGGCGC+AGG 0.531101 5_3:+61181439 Msa0822800:CDS
CCACCGTGGAAGAGCAGCAA+AGG 0.534392 5_3:+61177514 Msa0822800:CDS
GATGCTATAGTTTGTAGTAG+TGG 0.535438 5_3:+61181663 Msa0822800:CDS
GGTATGCGACATGTCCATAT+AGG 0.536117 5_3:-61180532 None:intergenic
ATGTTCAAGACATGTCCCTT+AGG 0.538002 5_3:+61181274 Msa0822800:CDS
TGGTCGTTACATGCCTAGAA+TGG 0.539666 5_3:+61179481 Msa0822800:CDS
TTGTCATCCTATGTACTGCA+GGG 0.539881 5_3:+61182134 Msa0822800:CDS
GAAGATATGTCTTCTGGGAG+TGG 0.542712 5_3:+61180467 Msa0822800:CDS
GAATGACCAGTGAGAACCAT+TGG 0.543147 5_3:-61179218 None:intergenic
CTATGATATTAGCCTTATCA+AGG 0.545314 5_3:+61180241 Msa0822800:CDS
GAATTCAGTCAAAATGCTCC+GGG 0.545318 5_3:+61182729 Msa0822800:three_prime_UTR
GCATTGTTATACGTAGGGGT+CGG 0.546947 5_3:-61182872 None:intergenic
ATTGTTATACGTAGGGGTCG+GGG 0.547121 5_3:-61182870 None:intergenic
AGATTCTGATACTGGTGGAC+AGG 0.547477 5_3:+61178707 Msa0822800:CDS
ATTCTCACAGATTAAATATG+TGG 0.547542 5_3:+61178794 Msa0822800:intron
TTCTCAAGATATTTATCGCG+TGG 0.550115 5_3:-61179014 None:intergenic
ATGTCATTCTTGGAGAAACC+GGG 0.550941 5_3:+61182372 Msa0822800:CDS
CTCACTCAGGCAGCTGCACA+TGG 0.552769 5_3:+61180831 Msa0822800:intron
CCTGGTGTTCACACAGAAGA+CGG 0.553137 5_3:+61181702 Msa0822800:CDS
AAAGTATTGGGCGAACAAGT+TGG 0.553972 5_3:+61179104 Msa0822800:CDS
AATGATGAGGATGATAGCAC+TGG 0.554095 5_3:+61178951 Msa0822800:CDS
CATCTAGAGCTCAGGCACTC+AGG 0.554105 5_3:+61182190 Msa0822800:CDS
TAGATTTGCTGCTAAAACAA+AGG 0.554181 5_3:+61180592 Msa0822800:CDS
CGAGGAGAAAACATGGAGCT+TGG 0.556627 5_3:+61178681 Msa0822800:CDS
CCACGCGTGTCAAATAAGTT+CGG 0.557990 5_3:-61181161 None:intergenic
GCGGCTGCAGCTAGAGAAAG+TGG 0.558789 5_3:+61177540 Msa0822800:CDS
TCTCAACAATGGTTTGCTTG+TGG 0.560272 5_3:+61181014 Msa0822800:CDS
TTAAGCAAGGGCGCCAATCG+TGG 0.560333 5_3:+61179270 Msa0822800:CDS
CTTGAACAACTTCTTAAGCA+AGG 0.561284 5_3:+61179257 Msa0822800:CDS
GCTATACTATCGACCGGTGG+TGG 0.561509 5_3:+61177483 Msa0822800:CDS
AGGCAAAAGCTTCGGATGAG+AGG 0.562981 5_3:+61182105 Msa0822800:CDS
TTGTTGCCACTCGTAATACA+AGG 0.564168 5_3:+61177649 Msa0822800:CDS
TATTTATCGCGTGGACCGAA+GGG 0.564470 5_3:-61179005 None:intergenic
CATGGACACTATGCTGATGC+TGG 0.565070 5_3:+61179158 Msa0822800:CDS
ATTGACGCCACGCCTATCAC+GGG 0.565168 5_3:-61179453 None:intergenic
GACTTCAAATCTTCCTCAAG+AGG 0.566808 5_3:-61181855 None:intergenic
GGGTGCTTTGAATGTGCCAA+TGG 0.569075 5_3:+61179202 Msa0822800:CDS
CTGGTGTTCACACAGAAGAC+GGG 0.569189 5_3:+61181703 Msa0822800:CDS
GAGGCATATTTGTAGGTGGA+AGG 0.570045 5_3:+61178043 Msa0822800:intron
AACGTGTCTTAAGCAAGATA+AGG 0.570558 5_3:+61181355 Msa0822800:CDS
AAGGTTAGCATACAGAAGAT+GGG 0.571711 5_3:+61178078 Msa0822800:CDS
TTGAACAACTTCTTAAGCAA+GGG 0.572319 5_3:+61179258 Msa0822800:CDS
CACAAGACTATAATCATGAA+AGG 0.574224 5_3:+61182428 Msa0822800:CDS
AGGGGTCGGGGTTCGAACAT+CGG 0.576143 5_3:-61182858 None:intergenic
TGCACTTGCGAAAACGGCAG+GGG 0.576901 5_3:+61178830 Msa0822800:CDS
TAATGTTAGGCTCTCAACAA+TGG 0.577990 5_3:+61181003 Msa0822800:intron
CCTACAGAAATGCTATCTGC+AGG 0.579559 5_3:+61178918 Msa0822800:CDS
GCTAATATCATAGGCTTGTG+AGG 0.579835 5_3:-61180231 None:intergenic
TAAAATAAATGATCCTAGCA+AGG 0.581641 5_3:+61181902 Msa0822800:CDS
TCTTTATGTAATGAAGAGAA+GGG 0.582023 5_3:-61177296 None:intergenic
TTGCGTGCCCGTGATAGGCG+TGG 0.587334 5_3:+61179446 Msa0822800:CDS
CACCGTGGAAGAGCAGCAAA+GGG 0.587799 5_3:+61177515 Msa0822800:CDS
CCGAACTTATTTGACACGCG+TGG 0.589671 5_3:+61181161 Msa0822800:CDS
TTGCAACATTTAATCTCCAA+CGG 0.590507 5_3:-61182343 None:intergenic
AGGCGTGGCGTCAATTGTCA+TGG 0.590517 5_3:+61179461 Msa0822800:CDS
TCTACAAATTCTTGAATGTG+AGG 0.592308 5_3:-61179050 None:intergenic
ATGAAAGGAGTTGTGTCTAA+GGG 0.592431 5_3:+61182443 Msa0822800:CDS
GGGAGTGAAGTTTATTACCC+TGG 0.593208 5_3:+61181684 Msa0822800:CDS
GCGTGGATGCGTGTAGAATG+AGG 0.594241 5_3:+61181178 Msa0822800:CDS
TGGAAGGAGAAGAACTTCAA+AGG 0.594294 5_3:+61178059 Msa0822800:CDS
TTGTCCGAAGAGTTGTCGGA+AGG 0.594632 5_3:+61178136 Msa0822800:CDS
GTAGTAGTAGTTTGCCATTG+TGG 0.595018 5_3:-61181204 None:intergenic
TAAGCAAGGGCGCCAATCGT+GGG 0.595077 5_3:+61179271 Msa0822800:CDS
CCTGCAGATAGCATTTCTGT+AGG 0.597226 5_3:-61178918 None:intergenic
TATACATCGTTCATTGCATG+TGG 0.602722 5_3:+61177248 Msa0822800:five_prime_UTR
CGGACCGGTTGACATTAATC+GGG 0.602974 5_3:+61180881 Msa0822800:CDS
TGAGCTCTAGATGCAAGAAG+AGG 0.603752 5_3:-61182180 None:intergenic
TATATCATAAGAATACCCTT+CGG 0.604189 5_3:+61178990 Msa0822800:CDS
TTGGGCGAACAAGTTGGCGG+TGG 0.604911 5_3:+61179110 Msa0822800:CDS
AGCTGCACATGGACTGCCAA+TGG 0.606889 5_3:+61180842 Msa0822800:CDS
TCGGAAGGAGAAAAGGGAGA+TGG 0.607859 5_3:+61178151 Msa0822800:CDS
AATACCCTCTATTAAGGCGA+AGG 0.608972 5_3:+61181433 Msa0822800:CDS
AGTTGATTGAGATAGTTCAA+AGG 0.609184 5_3:+61181514 Msa0822800:CDS
AATGAGAAGGATAGAAGCAG+AGG 0.609302 5_3:+61179319 Msa0822800:CDS
AATAGCAACTAGTCCTCTTG+AGG 0.609835 5_3:+61181842 Msa0822800:CDS
CAAGGAAGGTTGATGACTTG+AGG 0.610043 5_3:+61182085 Msa0822800:CDS
GGTGGTAGAAGCACCACCAC+CGG 0.611216 5_3:-61177496 None:intergenic
AATGTGCCAATGGTTCTCAC+TGG 0.613125 5_3:+61179212 Msa0822800:CDS
CAAGACTCGAGAACATGTGT+TGG 0.613633 5_3:+61177682 Msa0822800:CDS
GAAGATGGCCCTGAAGTCGA+CGG 0.615795 5_3:+61179790 Msa0822800:CDS
AAGCAACTTTCAAAATCTGG+AGG 0.616780 5_3:+61182584 Msa0822800:CDS
TGTCATCCTATGTACTGCAG+GGG 0.617290 5_3:+61182135 Msa0822800:CDS
GTGCACTTGCGAAAACGGCA+GGG 0.618490 5_3:+61178829 Msa0822800:CDS
AATGTCGTGATACAAGAAGA+TGG 0.619565 5_3:+61179775 Msa0822800:CDS
GCAATTGCTTGATGATCATG+AGG 0.622487 5_3:-61181039 None:intergenic
GGGAAATAGAACAAGGACGA+AGG 0.623524 5_3:+61178098 Msa0822800:CDS
ACATTGCTGAAGTCCATACC+AGG 0.626273 5_3:-61179757 None:intergenic
GTGCATATAGATTATCGTTG+GGG 0.628394 5_3:+61181753 Msa0822800:CDS
CTTGAGGCTATACTATCGAC+CGG 0.633150 5_3:+61177477 Msa0822800:CDS
ACCATCAATTGAAAGCCTAA+GGG 0.635336 5_3:-61181289 None:intergenic
GTATTGGGCGAACAAGTTGG+CGG 0.638742 5_3:+61179107 Msa0822800:CDS
CGTGGAAGAGCAGCAAAGGG+TGG 0.640548 5_3:+61177518 Msa0822800:CDS
GGAAATAGAACAAGGACGAA+GGG 0.642997 5_3:+61178099 Msa0822800:CDS
GCAAGGGCGCCAATCGTGGG+AGG 0.643681 5_3:+61179274 Msa0822800:CDS
AACCGGGGACACTGATTACG+AGG 0.645232 5_3:+61182388 Msa0822800:CDS
ACGTTCCCTTGTATTACGAG+TGG 0.651461 5_3:-61177655 None:intergenic
CGGTCGATAGTATAGCCTCA+AGG 0.654154 5_3:-61177476 None:intergenic
TGCACATGGACTGCCAATGG+TGG 0.655157 5_3:+61180845 Msa0822800:CDS
AGGACGAAGGGATGCAACCG+AGG 0.657678 5_3:+61178111 Msa0822800:CDS
CAACGTATAAGATAATGAGA+AGG 0.658712 5_3:+61179306 Msa0822800:CDS
TGCTGAAGTCCATACCAGGA+GGG 0.659439 5_3:-61179753 None:intergenic
ATGAGTGCAGAAACAATGGT+TGG 0.659698 5_3:+61181103 Msa0822800:CDS
ATTGGTACGAGGAGAAAACA+TGG 0.659978 5_3:+61178674 Msa0822800:CDS
GATTAATGGCTGGTAATGAG+TGG 0.660879 5_3:+61177442 Msa0822800:exon
GGTAGAGATTCTGATACTGG+TGG 0.661211 5_3:+61178702 Msa0822800:CDS
TGAATCACATAAGGCCACAC+AGG 0.666294 5_3:-61179137 None:intergenic
CATGTTGAGAATGTGAGCTA+AGG 0.670102 5_3:-61179078 None:intergenic
AGAAGATGGGAAATAGAACA+AGG 0.672517 5_3:+61178091 Msa0822800:CDS
GTCATCCTATGTACTGCAGG+GGG 0.673599 5_3:+61182136 Msa0822800:CDS
TGGCATGAGTGCAGAAACAA+TGG 0.674469 5_3:+61181099 Msa0822800:CDS
AGTTTGCATGGATTGGTACG+AGG 0.674490 5_3:+61178663 Msa0822800:intron
GTAGAATGAGGCATCCACAA+TGG 0.679184 5_3:+61181190 Msa0822800:CDS
TCGTTACATGCCTAGAATGG+CGG 0.685556 5_3:+61179484 Msa0822800:CDS
TGAATGTTACATGATCGACA+TGG 0.686618 5_3:-61177323 None:intergenic
GAATTTGCTGCATCAAGCGG+TGG 0.686684 5_3:+61181312 Msa0822800:CDS
GGTGAATTTGCTGCATCAAG+CGG 0.687360 5_3:+61181309 Msa0822800:CDS
TGGTGGTGCTTCTACCACCG+TGG 0.689668 5_3:+61177500 Msa0822800:CDS
GTGGATTAATGGCTACCTTG+AGG 0.690844 5_3:+61177461 Msa0822800:CDS
TATGACAATGCAAGAAACAA+CGG 0.693451 5_3:+61181602 Msa0822800:CDS
CGTCTTCTGTGTGAACACCA+GGG 0.693652 5_3:-61181701 None:intergenic
GAGGCTATACTATCGACCGG+TGG 0.697000 5_3:+61177480 Msa0822800:CDS
GATAGCACTGGAGAGAGCAG+GGG 0.699662 5_3:+61178963 Msa0822800:CDS
TTGCTGAAGTCCATACCAGG+AGG 0.704079 5_3:-61179754 None:intergenic
TGTCATTCTTGGAGAAACCG+GGG 0.712395 5_3:+61182373 Msa0822800:CDS
ATGCATTAGTGAAACAACAG+AGG 0.717974 5_3:+61182541 Msa0822800:CDS
TTGGCGGTGGACAACCTGTG+TGG 0.719682 5_3:+61179123 Msa0822800:CDS
AGGTCCAGATGATAATGATG+AGG 0.720340 5_3:+61178938 Msa0822800:CDS
CCTTTGCTGCTCTTCCACGG+TGG 0.722242 5_3:-61177514 None:intergenic
TGTTGCCACTCGTAATACAA+GGG 0.724087 5_3:+61177650 Msa0822800:CDS
CAAGAAATTGATGAACAATG+GGG 0.724779 5_3:+61179386 Msa0822800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTAAGATTAATTTGTT+TGG + chr5_3:61177971-61177990 Msa0822800:intron 10.0%
!!! TTCCTAAATTTTAAAATAAA+TGG + chr5_3:61180962-61180981 Msa0822800:intron 10.0%
!! AATATGATTATATAGATTTG+AGG - chr5_3:61178551-61178570 None:intergenic 15.0%
!! TTATTATTAACTAAATGAGA+GGG - chr5_3:61178767-61178786 None:intergenic 15.0%
!! ATTATTATTAACTAAATGAG+AGG - chr5_3:61178768-61178787 None:intergenic 15.0%
!! ATTAATTGATATGTTATGAT+AGG - chr5_3:61179606-61179625 None:intergenic 15.0%
!!! CAATTAATTCATACTATTTT+AGG + chr5_3:61179618-61179637 Msa0822800:intron 15.0%
!! GTTTATTATTTAAATGTGTT+AGG + chr5_3:61182309-61182328 Msa0822800:intron 15.0%
!!! CTTTTTAAAAGTGAATAAAT+GGG + chr5_3:61182831-61182850 Msa0822800:three_prime_UTR 15.0%
!!! TTTTTAAAAGTGAATAAATG+GGG + chr5_3:61182832-61182851 Msa0822800:three_prime_UTR 15.0%
!!! TCTTCAACAAAATATTTTGT+TGG - chr5_3:61177579-61177598 None:intergenic 20.0%
!! GTATGTTTATGAATGAAAAT+TGG - chr5_3:61177775-61177794 None:intergenic 20.0%
!!! TAAGATTAATTTGTTTGGAT+TGG + chr5_3:61177976-61177995 Msa0822800:intron 20.0%
!! CAAAATTCATAGGATAAATT+AGG - chr5_3:61178002-61178021 None:intergenic 20.0%
!!! AGTATTTTCACAAAATTCAT+AGG - chr5_3:61178012-61178031 None:intergenic 20.0%
!! AACTTTATATTATCCTCTTA+AGG + chr5_3:61178269-61178288 Msa0822800:CDS 20.0%
!! TAAGAATAATATACCTTAAG+AGG - chr5_3:61178285-61178304 None:intergenic 20.0%
!! AAAATATCAAACTAGTTAGT+CGG - chr5_3:61180673-61180692 None:intergenic 20.0%
!!! CGCCATTTATTTTAAAATTT+AGG - chr5_3:61180967-61180986 None:intergenic 20.0%
!!! TGATTCTTTGTTATAATGTT+AGG + chr5_3:61180990-61181009 Msa0822800:intron 20.0%
!!! TGAATACTATGGAAATTTTA+TGG - chr5_3:61182279-61182298 None:intergenic 20.0%
!!! CCATTTATTCACTTTTAAAA+AGG - chr5_3:61182833-61182852 None:intergenic 20.0%
!!! CCTTTTTAAAAGTGAATAAA+TGG + chr5_3:61182830-61182849 Msa0822800:three_prime_UTR 20.0%
! TCTTTATGTAATGAAGAGAA+GGG - chr5_3:61177299-61177318 None:intergenic 25.0%
! ATCTTTATGTAATGAAGAGA+AGG - chr5_3:61177300-61177319 None:intergenic 25.0%
! CAAAGAAAGTTTGTGATTAA+TGG + chr5_3:61177428-61177447 Msa0822800:exon 25.0%
! CTGAAACACTCAAAAAATTT+AGG - chr5_3:61177900-61177919 None:intergenic 25.0%
! CCTAACAATGTTTAATAGTA+TGG - chr5_3:61177937-61177956 None:intergenic 25.0%
! CCATACTATTAAACATTGTT+AGG + chr5_3:61177934-61177953 Msa0822800:intron 25.0%
!! AAAATACTAGAGTACTAATG+AGG + chr5_3:61178024-61178043 Msa0822800:intron 25.0%
! AATATGGTCTGATGATAAAA+AGG + chr5_3:61178240-61178259 Msa0822800:CDS 25.0%
! AGGTATATTATTCTTAGACT+CGG + chr5_3:61178289-61178308 Msa0822800:intron 25.0%
! ACGAAAACAATAAACACTTA+TGG - chr5_3:61178347-61178366 None:intergenic 25.0%
! ATTCTCACAGATTAAATATG+TGG + chr5_3:61178794-61178813 Msa0822800:intron 25.0%
! TATATCATAAGAATACCCTT+CGG + chr5_3:61178990-61179009 Msa0822800:CDS 25.0%
! ACAAGAAATTGATGAACAAT+GGG + chr5_3:61179385-61179404 Msa0822800:CDS 25.0%
! TATATCAGTTATCTCTTTGA+TGG + chr5_3:61179683-61179702 Msa0822800:intron 25.0%
! TATACAGTGATAATATGTGT+TGG + chr5_3:61179893-61179912 Msa0822800:intron 25.0%
! CCTTCATTTAACAAATTCTT+AGG - chr5_3:61179951-61179970 None:intergenic 25.0%
!!! CCTAAGAATTTGTTAAATGA+AGG + chr5_3:61179948-61179967 Msa0822800:intron 25.0%
! AGTGTAGATCAAAATATCTT+AGG + chr5_3:61180009-61180028 Msa0822800:intron 25.0%
! GTGTAGATCAAAATATCTTA+GGG + chr5_3:61180010-61180029 Msa0822800:intron 25.0%
! TGTAGATCAAAATATCTTAG+GGG + chr5_3:61180011-61180030 Msa0822800:intron 25.0%
! CATAGTAATTCTTTGGTTAT+CGG - chr5_3:61180063-61180082 None:intergenic 25.0%
! AATACTAACAGTTCAAAGTT+TGG + chr5_3:61180116-61180135 Msa0822800:intron 25.0%
! TGAAACTAATAACATTATGC+AGG + chr5_3:61180188-61180207 Msa0822800:intron 25.0%
! GAACATAACAACTCTATTAA+AGG + chr5_3:61180278-61180297 Msa0822800:CDS 25.0%
!! TAAGTTGTTACTTACAAGAT+TGG - chr5_3:61180337-61180356 None:intergenic 25.0%
! ATTGACAAATATGACCTATA+TGG + chr5_3:61180518-61180537 Msa0822800:CDS 25.0%
!!! ACTAGTTTGATATTTTTCTC+AGG + chr5_3:61180677-61180696 Msa0822800:intron 25.0%
!! CTAGTTTGATATTTTTCTCA+GGG + chr5_3:61180678-61180697 Msa0822800:intron 25.0%
! TCAATTAAAGTAAGACCAAA+AGG - chr5_3:61180732-61180751 None:intergenic 25.0%
!!! TTTTGGTCTTACTTTAATTG+AGG + chr5_3:61180731-61180750 Msa0822800:CDS 25.0%
!!! ATTTTAACTAACTACCACTT+TGG + chr5_3:61180757-61180776 Msa0822800:intron 25.0%
! TAAAATAAATGATCCTAGCA+AGG + chr5_3:61181902-61181921 Msa0822800:CDS 25.0%
!! TGATTGAAATTGTTCGTTTT+AGG + chr5_3:61182062-61182081 Msa0822800:intron 25.0%
! CATTCAAATTCTGAATACTA+TGG - chr5_3:61182290-61182309 None:intergenic 25.0%
!!! TTACTTTTCCAAGTATAGAA+TGG + chr5_3:61182667-61182686 Msa0822800:three_prime_UTR 25.0%
! TTCAATTTCCATTCTATACT+TGG - chr5_3:61182678-61182697 None:intergenic 25.0%
! CGATGTATATTGCTCATTTT+TGG - chr5_3:61177237-61177256 None:intergenic 30.0%
TACTAATGAGGCATATTTGT+AGG + chr5_3:61178036-61178055 Msa0822800:intron 30.0%
TTGAGGTGAACAAAGAATAA+GGG - chr5_3:61178534-61178553 None:intergenic 30.0%
! TTTGAGGTGAACAAAGAATA+AGG - chr5_3:61178535-61178554 None:intergenic 30.0%
TTTATACAGTTTGCATGGAT+TGG + chr5_3:61178656-61178675 Msa0822800:intron 30.0%
ATCTTGAGAAAGAACTTCTT+TGG + chr5_3:61179027-61179046 Msa0822800:CDS 30.0%
TCTACAAATTCTTGAATGTG+AGG - chr5_3:61179053-61179072 None:intergenic 30.0%
CACATTCAAGAATTTGTAGA+TGG + chr5_3:61179053-61179072 Msa0822800:CDS 30.0%
! TCTCAACATGTCAAAAGTAT+TGG + chr5_3:61179091-61179110 Msa0822800:CDS 30.0%
!! CTCAACATGTCAAAAGTATT+GGG + chr5_3:61179092-61179111 Msa0822800:CDS 30.0%
TTGAACAACTTCTTAAGCAA+GGG + chr5_3:61179258-61179277 Msa0822800:CDS 30.0%
CAACGTATAAGATAATGAGA+AGG + chr5_3:61179306-61179325 Msa0822800:CDS 30.0%
GACAAGAAATTGATGAACAA+TGG + chr5_3:61179384-61179403 Msa0822800:CDS 30.0%
CAAGAAATTGATGAACAATG+GGG + chr5_3:61179386-61179405 Msa0822800:CDS 30.0%
TGTGAAAAGTTATACACTGA+CGG - chr5_3:61179576-61179595 None:intergenic 30.0%
! TAGGTCTTCAAACTTGATTT+TGG + chr5_3:61179637-61179656 Msa0822800:intron 30.0%
GAACAATACCATCTCTTAAA+TGG + chr5_3:61179714-61179733 Msa0822800:intron 30.0%
TGTGTGACATAGTAATTCTT+TGG - chr5_3:61180070-61180089 None:intergenic 30.0%
TCAAGTCAATAACAGTACTA+AGG - chr5_3:61180171-61180190 None:intergenic 30.0%
CTTGATAAGGCTAATATCAT+AGG - chr5_3:61180243-61180262 None:intergenic 30.0%
!! CTATGATATTAGCCTTATCA+AGG + chr5_3:61180241-61180260 Msa0822800:CDS 30.0%
AGAGTTGTTATGTTCTTCTT+TGG - chr5_3:61180273-61180292 None:intergenic 30.0%
! ACAACTCTATTAAAGGCTTT+TGG + chr5_3:61180285-61180304 Msa0822800:CDS 30.0%
TATAATTCAATTGCCACACT+TGG + chr5_3:61180364-61180383 Msa0822800:intron 30.0%
TTCTAAACAGACCCTTATAA+TGG + chr5_3:61180427-61180446 Msa0822800:intron 30.0%
TCTAAACAGACCCTTATAAT+GGG + chr5_3:61180428-61180447 Msa0822800:intron 30.0%
ATCTCTGTTTCCCATTATAA+GGG - chr5_3:61180441-61180460 None:intergenic 30.0%
ACATAGAAGATATGTCTTCT+GGG + chr5_3:61180462-61180481 Msa0822800:CDS 30.0%
CAGATTGTCTATGATGTTTA+GGG - chr5_3:61180556-61180575 None:intergenic 30.0%
TCAGATTGTCTATGATGTTT+AGG - chr5_3:61180557-61180576 None:intergenic 30.0%
!! TAGATTTGCTGCTAAAACAA+AGG + chr5_3:61180592-61180611 Msa0822800:CDS 30.0%
TTTCATAAATCCTGCTTTAG+TGG + chr5_3:61180704-61180723 Msa0822800:CDS 30.0%
TGAGTTACAATGTACATACT+AGG + chr5_3:61180936-61180955 Msa0822800:intron 30.0%
TGTTATCAGAGAAAAACCTA+TGG + chr5_3:61181079-61181098 Msa0822800:CDS 30.0%
GTCTTTCAATGATTCACTTA+AGG + chr5_3:61181251-61181270 Msa0822800:CDS 30.0%
CAAACAAATACCCTCTATTA+AGG + chr5_3:61181427-61181446 Msa0822800:CDS 30.0%
ATCTCAATCAACTTCTTATC+AGG - chr5_3:61181507-61181526 None:intergenic 30.0%
AGTTGATTGAGATAGTTCAA+AGG + chr5_3:61181514-61181533 Msa0822800:CDS 30.0%
TATGACAATGCAAGAAACAA+CGG + chr5_3:61181602-61181621 Msa0822800:CDS 30.0%
! ATGCTATAGTTTGTAGTAGT+GGG + chr5_3:61181664-61181683 Msa0822800:CDS 30.0%
AGTGCATATAGATTATCGTT+GGG + chr5_3:61181752-61181771 Msa0822800:CDS 30.0%
AAACTTATGAATGCCTCTAA+TGG + chr5_3:61181804-61181823 Msa0822800:CDS 30.0%
TAAATTTCACTTACCTTGCT+AGG - chr5_3:61181918-61181937 None:intergenic 30.0%
GATTGAGTTTATCAGAATCA+CGG - chr5_3:61182017-61182036 None:intergenic 30.0%
TTGCAACATTTAATCTCCAA+CGG - chr5_3:61182346-61182365 None:intergenic 30.0%
CACAAGACTATAATCATGAA+AGG + chr5_3:61182428-61182447 Msa0822800:CDS 30.0%
TTGAAGCAACTTTCAAAATC+TGG + chr5_3:61182581-61182600 Msa0822800:CDS 30.0%
ATTGAGAGCAAGCAAAAATA+CGG - chr5_3:61182755-61182774 None:intergenic 30.0%
TATACATCGTTCATTGCATG+TGG + chr5_3:61177248-61177267 Msa0822800:five_prime_UTR 35.0%
TGAATGTTACATGATCGACA+TGG - chr5_3:61177326-61177345 None:intergenic 35.0%
GAAAGTTTGTGATTAATGGC+TGG + chr5_3:61177432-61177451 Msa0822800:exon 35.0%
TAGGTGTAGAGTTCAAACTT+TGG - chr5_3:61177881-61177900 None:intergenic 35.0%
TAATGAGGCATATTTGTAGG+TGG + chr5_3:61178039-61178058 Msa0822800:intron 35.0%
AAAGGTTAGCATACAGAAGA+TGG + chr5_3:61178077-61178096 Msa0822800:CDS 35.0%
AAGGTTAGCATACAGAAGAT+GGG + chr5_3:61178078-61178097 Msa0822800:CDS 35.0%
AGAAGATGGGAAATAGAACA+AGG + chr5_3:61178091-61178110 Msa0822800:CDS 35.0%
CTCAACAGAAAAAACTTCAG+AGG + chr5_3:61178200-61178219 Msa0822800:CDS 35.0%
TATCATCAGACCATATTTCC+TGG - chr5_3:61178237-61178256 None:intergenic 35.0%
GCTATTTGCGATTGTTATCA+TGG + chr5_3:61178378-61178397 Msa0822800:intron 35.0%
ACACTTGTGAAACTCTTTGA+AGG - chr5_3:61178466-61178485 None:intergenic 35.0%
TGCAAACTGTATAAAAGCCA+AGG - chr5_3:61178651-61178670 None:intergenic 35.0%
! TGGCTTTTATACAGTTTGCA+TGG + chr5_3:61178651-61178670 Msa0822800:intron 35.0%
CAATGTCAGGAGATGATATT+TGG - chr5_3:61178881-61178900 None:intergenic 35.0%
TATCATCTCCTGACATTGAT+TGG + chr5_3:61178883-61178902 Msa0822800:CDS 35.0%
TCATCCTCATCATTATCATC+TGG - chr5_3:61178945-61178964 None:intergenic 35.0%
TTCTCAAGATATTTATCGCG+TGG - chr5_3:61179017-61179036 None:intergenic 35.0%
TAGTGTCCATGAATCACATA+AGG - chr5_3:61179149-61179168 None:intergenic 35.0%
CTTGAACAACTTCTTAAGCA+AGG + chr5_3:61179257-61179276 Msa0822800:CDS 35.0%
AACAATGGGGACTTTATGAT+GGG + chr5_3:61179399-61179418 Msa0822800:CDS 35.0%
CGGAAATTCCATTTAAGAGA+TGG - chr5_3:61179725-61179744 None:intergenic 35.0%
AATGTCGTGATACAAGAAGA+TGG + chr5_3:61179775-61179794 Msa0822800:CDS 35.0%
! CAAATTGAAGGTAACGCTTT+TGG - chr5_3:61179856-61179875 None:intergenic 35.0%
!! CAAAAGCGTTACCTTCAATT+TGG + chr5_3:61179854-61179873 Msa0822800:CDS 35.0%
CTCACTTCTAACCAAATTGA+AGG - chr5_3:61179868-61179887 None:intergenic 35.0%
ATGTGATCATATATGCCTCA+AGG + chr5_3:61179981-61180000 Msa0822800:intron 35.0%
GATCTACACTTAAAACCTTG+AGG - chr5_3:61179999-61180018 None:intergenic 35.0%
ACTAACAGTTCAAAGTTTGG+AGG + chr5_3:61180119-61180138 Msa0822800:intron 35.0%
GTTATGTTCTTCTTTGGATC+TGG - chr5_3:61180267-61180286 None:intergenic 35.0%
!!! AAGATTGGCTAGTTTTCTCA+AGG - chr5_3:61180322-61180341 None:intergenic 35.0%
! ATCATATTTTCCACCAAGTG+TGG - chr5_3:61180380-61180399 None:intergenic 35.0%
CATCTCTGTTTCCCATTATA+AGG - chr5_3:61180442-61180461 None:intergenic 35.0%
GACATAGAAGATATGTCTTC+TGG + chr5_3:61180461-61180480 Msa0822800:CDS 35.0%
GCAGCAAATCTATATATCTC+AGG - chr5_3:61180584-61180603 None:intergenic 35.0%
ATGTGAATATGTCACCAAAG+TGG - chr5_3:61180774-61180793 None:intergenic 35.0%
ATGTGTGTTTAAACTCACTC+AGG + chr5_3:61180818-61180837 Msa0822800:intron 35.0%
ATTACCCGATTAATGTCAAC+CGG - chr5_3:61180888-61180907 None:intergenic 35.0%
TAATGTTAGGCTCTCAACAA+TGG + chr5_3:61181003-61181022 Msa0822800:intron 35.0%
! AGAATATACACCTTTTCTCG+TGG + chr5_3:61181127-61181146 Msa0822800:CDS 35.0%
ACCATCAATTGAAAGCCTAA+GGG - chr5_3:61181292-61181311 None:intergenic 35.0%
AACGTGTCTTAAGCAAGATA+AGG + chr5_3:61181355-61181374 Msa0822800:CDS 35.0%
AAGATAAGGAAGCAAGATTC+TGG + chr5_3:61181369-61181388 Msa0822800:CDS 35.0%
CTTGATTCCTATGACAGTAA+TGG + chr5_3:61181477-61181496 Msa0822800:CDS 35.0%
! GATGCTATAGTTTGTAGTAG+TGG + chr5_3:61181663-61181682 Msa0822800:CDS 35.0%
TGCACTGAATAATCTTGATC+AGG - chr5_3:61181738-61181757 None:intergenic 35.0%
CAGTGCATATAGATTATCGT+TGG + chr5_3:61181751-61181770 Msa0822800:CDS 35.0%
GTGCATATAGATTATCGTTG+GGG + chr5_3:61181753-61181772 Msa0822800:CDS 35.0%
! ATTAGTCTCTTCACCATTAG+AGG - chr5_3:61181820-61181839 None:intergenic 35.0%
TCTAATGGTGAAGAGACTAA+TGG + chr5_3:61181819-61181838 Msa0822800:CDS 35.0%
! TAAGTGCTTGGTTGGTATTA+CGG + chr5_3:61181965-61181984 Msa0822800:intron 35.0%
!! GAAATTGTTCGTTTTAGGCA+AGG + chr5_3:61182067-61182086 Msa0822800:intron 35.0%
GCAAACATGTATGTCATTCT+TGG + chr5_3:61182362-61182381 Msa0822800:CDS 35.0%
TATGTCATTCTTGGAGAAAC+CGG + chr5_3:61182371-61182390 Msa0822800:CDS 35.0%
GATTACGAGGAAATGATTTC+TGG + chr5_3:61182401-61182420 Msa0822800:CDS 35.0%
ATGAAAGGAGTTGTGTCTAA+GGG + chr5_3:61182443-61182462 Msa0822800:CDS 35.0%
TTGGTACAACATCATCTCTT+TGG - chr5_3:61182502-61182521 None:intergenic 35.0%
ATGCATTAGTGAAACAACAG+AGG + chr5_3:61182541-61182560 Msa0822800:CDS 35.0%
AAGCAACTTTCAAAATCTGG+AGG + chr5_3:61182584-61182603 Msa0822800:CDS 35.0%
TGAATTCAGTCAAAATGCTC+CGG + chr5_3:61182728-61182747 Msa0822800:three_prime_UTR 35.0%
! GATTAATGGCTGGTAATGAG+TGG + chr5_3:61177442-61177461 Msa0822800:exon 40.0%
!! GCTGGTAATGAGTGGATTAA+TGG + chr5_3:61177450-61177469 Msa0822800:CDS 40.0%
AGTCTGATCTTCATCGTACA+TGG + chr5_3:61177619-61177638 Msa0822800:CDS 40.0%
TCTTCATCGTACATGGCTTA+AGG + chr5_3:61177626-61177645 Msa0822800:CDS 40.0%
TTGTTGCCACTCGTAATACA+AGG + chr5_3:61177649-61177668 Msa0822800:CDS 40.0%
TGTTGCCACTCGTAATACAA+GGG + chr5_3:61177650-61177669 Msa0822800:CDS 40.0%
! AGAACATGTGTTGGCGTATT+TGG + chr5_3:61177691-61177710 Msa0822800:CDS 40.0%
TGGAAGGAGAAGAACTTCAA+AGG + chr5_3:61178059-61178078 Msa0822800:CDS 40.0%
GGAAATAGAACAAGGACGAA+GGG + chr5_3:61178099-61178118 Msa0822800:CDS 40.0%
ATGCTTCTAGCCAGGAAATA+TGG + chr5_3:61178224-61178243 Msa0822800:CDS 40.0%
GCAATGTTTGATCATGACCT+TGG + chr5_3:61178631-61178650 Msa0822800:intron 40.0%
ATTGGTACGAGGAGAAAACA+TGG + chr5_3:61178674-61178693 Msa0822800:CDS 40.0%
CTTGGTAGAGATTCTGATAC+TGG + chr5_3:61178699-61178718 Msa0822800:CDS 40.0%
! AGGTCCAGATGATAATGATG+AGG + chr5_3:61178938-61178957 Msa0822800:CDS 40.0%
AATGATGAGGATGATAGCAC+TGG + chr5_3:61178951-61178970 Msa0822800:CDS 40.0%
CATGTTGAGAATGTGAGCTA+AGG - chr5_3:61179081-61179100 None:intergenic 40.0%
!! AAAGTATTGGGCGAACAAGT+TGG + chr5_3:61179104-61179123 Msa0822800:CDS 40.0%
AATGAGAAGGATAGAAGCAG+AGG + chr5_3:61179319-61179338 Msa0822800:CDS 40.0%
GAACAATGGGGACTTTATGA+TGG + chr5_3:61179398-61179417 Msa0822800:CDS 40.0%
CTCTTAAATGGAATTTCCGC+AGG + chr5_3:61179726-61179745 Msa0822800:intron 40.0%
GCTAATATCATAGGCTTGTG+AGG - chr5_3:61180234-61180253 None:intergenic 40.0%
AATTCAATTGCCACACTTGG+TGG + chr5_3:61180367-61180386 Msa0822800:intron 40.0%
!! TCTCAACAATGGTTTGCTTG+TGG + chr5_3:61181014-61181033 Msa0822800:CDS 40.0%
! GCAATTGCTTGATGATCATG+AGG - chr5_3:61181042-61181061 None:intergenic 40.0%
ATGAGTGCAGAAACAATGGT+TGG + chr5_3:61181103-61181122 Msa0822800:CDS 40.0%
AAATAAGTTCGGCAGTGTTC+AGG - chr5_3:61181153-61181172 None:intergenic 40.0%
! GTAGTAGTAGTTTGCCATTG+TGG - chr5_3:61181207-61181226 None:intergenic 40.0%
ATGTTCAAGACATGTCCCTT+AGG + chr5_3:61181274-61181293 Msa0822800:CDS 40.0%
TCCCTTAGGCTTTCAATTGA+TGG + chr5_3:61181288-61181307 Msa0822800:CDS 40.0%
CACCATCAATTGAAAGCCTA+AGG - chr5_3:61181293-61181312 None:intergenic 40.0%
TGCTTAAGACACGTTTCACT+TGG - chr5_3:61181350-61181369 None:intergenic 40.0%
AATACCCTCTATTAAGGCGA+AGG + chr5_3:61181433-61181452 Msa0822800:CDS 40.0%
AGGATCTCCATTACTGTCAT+AGG - chr5_3:61181487-61181506 None:intergenic 40.0%
!! ACAACGGAATTTCTAGCATC+TGG + chr5_3:61181618-61181637 Msa0822800:CDS 40.0%
AATAGCAACTAGTCCTCTTG+AGG + chr5_3:61181842-61181861 Msa0822800:CDS 40.0%
GACTTCAAATCTTCCTCAAG+AGG - chr5_3:61181858-61181877 None:intergenic 40.0%
! TAATCTGTGTCGGTGTGAAA+AGG - chr5_3:61181947-61181966 None:intergenic 40.0%
ACCAAGCACTTAATCTGTGT+CGG - chr5_3:61181957-61181976 None:intergenic 40.0%
ACACAGATTAAGTGCTTGGT+TGG + chr5_3:61181957-61181976 Msa0822800:intron 40.0%
!! TTGTTCGTTTTAGGCAAGGA+AGG + chr5_3:61182071-61182090 Msa0822800:intron 40.0%
ATGACTTGAGGCAAAAGCTT+CGG + chr5_3:61182097-61182116 Msa0822800:CDS 40.0%
TTGTCATCCTATGTACTGCA+GGG + chr5_3:61182134-61182153 Msa0822800:CDS 40.0%
TTAGGTATTTGTTCGTCCGT+TGG + chr5_3:61182327-61182346 Msa0822800:intron 40.0%
ATGTCATTCTTGGAGAAACC+GGG + chr5_3:61182372-61182391 Msa0822800:CDS 40.0%
CATGAAAGGAGTTGTGTCTA+AGG + chr5_3:61182442-61182461 Msa0822800:CDS 40.0%
GGTTCAGAAGAATTGCTTAG+AGG + chr5_3:61182464-61182483 Msa0822800:CDS 40.0%
TGAAAGTTGCTTCAATGCGT+TGG - chr5_3:61182576-61182595 None:intergenic 40.0%
GAATTCAGTCAAAATGCTCC+GGG + chr5_3:61182729-61182748 Msa0822800:three_prime_UTR 40.0%
! GTGGATTAATGGCTACCTTG+AGG + chr5_3:61177461-61177480 Msa0822800:CDS 45.0%
CTTGAGGCTATACTATCGAC+CGG + chr5_3:61177477-61177496 Msa0822800:CDS 45.0%
ACGTTCCCTTGTATTACGAG+TGG - chr5_3:61177658-61177677 None:intergenic 45.0%
CAAGACTCGAGAACATGTGT+TGG + chr5_3:61177682-61177701 Msa0822800:CDS 45.0%
TCTTGCTCGCAAGAAGAAGA+AGG + chr5_3:61177716-61177735 Msa0822800:CDS 45.0%
GAGGCATATTTGTAGGTGGA+AGG + chr5_3:61178043-61178062 Msa0822800:intron 45.0%
GGGAAATAGAACAAGGACGA+AGG + chr5_3:61178098-61178117 Msa0822800:CDS 45.0%
CAACTCTTCGGACAAATCCT+CGG - chr5_3:61178131-61178150 None:intergenic 45.0%
GGATTTGTCCGAAGAGTTGT+CGG + chr5_3:61178132-61178151 Msa0822800:CDS 45.0%
TTCTCCTTCCGACAACTCTT+CGG - chr5_3:61178143-61178162 None:intergenic 45.0%
AGAGTTGTCGGAAGGAGAAA+AGG + chr5_3:61178144-61178163 Msa0822800:CDS 45.0%
GAGTTGTCGGAAGGAGAAAA+GGG + chr5_3:61178145-61178164 Msa0822800:CDS 45.0%
GAGAAAAGGGAGATGGCATT+GGG + chr5_3:61178158-61178177 Msa0822800:CDS 45.0%
AGAAAAGGGAGATGGCATTG+GGG + chr5_3:61178159-61178178 Msa0822800:CDS 45.0%
!! AGTTTGCATGGATTGGTACG+AGG + chr5_3:61178663-61178682 Msa0822800:intron 45.0%
GGTAGAGATTCTGATACTGG+TGG + chr5_3:61178702-61178721 Msa0822800:CDS 45.0%
! AGATTCTGATACTGGTGGAC+AGG + chr5_3:61178707-61178726 Msa0822800:CDS 45.0%
CCATAGCTCCAATCAATGTC+AGG - chr5_3:61178894-61178913 None:intergenic 45.0%
! CCTGACATTGATTGGAGCTA+TGG + chr5_3:61178891-61178910 Msa0822800:CDS 45.0%
CCTGCAGATAGCATTTCTGT+AGG - chr5_3:61178921-61178940 None:intergenic 45.0%
CCTACAGAAATGCTATCTGC+AGG + chr5_3:61178918-61178937 Msa0822800:CDS 45.0%
TATTTATCGCGTGGACCGAA+GGG - chr5_3:61179008-61179027 None:intergenic 45.0%
ATATTTATCGCGTGGACCGA+AGG - chr5_3:61179009-61179028 None:intergenic 45.0%
TGAATCACATAAGGCCACAC+AGG - chr5_3:61179140-61179159 None:intergenic 45.0%
!! GTGTGGCCTTATGTGATTCA+TGG + chr5_3:61179140-61179159 Msa0822800:CDS 45.0%
! TGACAGTGCTGCTCTTCTTT+CGG + chr5_3:61179181-61179200 Msa0822800:CDS 45.0%
AATGTGCCAATGGTTCTCAC+TGG + chr5_3:61179212-61179231 Msa0822800:CDS 45.0%
GAATGACCAGTGAGAACCAT+TGG - chr5_3:61179221-61179240 None:intergenic 45.0%
GTTCTCACTGGTCATTCACT+TGG + chr5_3:61179224-61179243 Msa0822800:CDS 45.0%
! AGTTGATATCCTCCCACGAT+TGG - chr5_3:61179286-61179305 None:intergenic 45.0%
TGGTCGTTACATGCCTAGAA+TGG + chr5_3:61179481-61179500 Msa0822800:CDS 45.0%
TCGTTACATGCCTAGAATGG+CGG + chr5_3:61179484-61179503 Msa0822800:CDS 45.0%
TGCATTCTTACCGCCATTCT+AGG - chr5_3:61179497-61179516 None:intergenic 45.0%
ACATTGCTGAAGTCCATACC+AGG - chr5_3:61179760-61179779 None:intergenic 45.0%
ACAACGAGCTAATGATCAGG+AGG - chr5_3:61180038-61180057 None:intergenic 45.0%
GCTACAACGAGCTAATGATC+AGG - chr5_3:61180041-61180060 None:intergenic 45.0%
!! CTTTGGATCTGGCCTTGATA+AGG - chr5_3:61180256-61180275 None:intergenic 45.0%
! GAAGATATGTCTTCTGGGAG+TGG + chr5_3:61180467-61180486 Msa0822800:CDS 45.0%
GGTATGCGACATGTCCATAT+AGG - chr5_3:61180535-61180554 None:intergenic 45.0%
CCAAAAGGTTCCACTAAAGC+AGG - chr5_3:61180717-61180736 None:intergenic 45.0%
! CCTGCTTTAGTGGAACCTTT+TGG + chr5_3:61180714-61180733 Msa0822800:CDS 45.0%
!!! CCATTTTTAGTGGCCACCAT+TGG - chr5_3:61180861-61180880 None:intergenic 45.0%
CCAATGGTGGCCACTAAAAA+TGG + chr5_3:61180858-61180877 Msa0822800:CDS 45.0%
ATGGTGGCCACTAAAAATGG+CGG + chr5_3:61180861-61180880 Msa0822800:CDS 45.0%
! TGTTTCTGCACTCATGCCAT+AGG - chr5_3:61181098-61181117 None:intergenic 45.0%
TGGCATGAGTGCAGAAACAA+TGG + chr5_3:61181099-61181118 Msa0822800:CDS 45.0%
CCACGCGTGTCAAATAAGTT+CGG - chr5_3:61181164-61181183 None:intergenic 45.0%
! GTAGAATGAGGCATCCACAA+TGG + chr5_3:61181190-61181209 Msa0822800:CDS 45.0%
!! GGTGAATTTGCTGCATCAAG+CGG + chr5_3:61181309-61181328 Msa0822800:CDS 45.0%
CCGAAACTCTTGCAGTTTGA+GGG - chr5_3:61181563-61181582 None:intergenic 45.0%
CCCTCAAACTGCAAGAGTTT+CGG + chr5_3:61181560-61181579 Msa0822800:CDS 45.0%
CCTCAAACTGCAAGAGTTTC+GGG + chr5_3:61181561-61181580 Msa0822800:CDS 45.0%
GGGAGTGAAGTTTATTACCC+TGG + chr5_3:61181684-61181703 Msa0822800:CDS 45.0%
ACCGACACAGATTAAGTGCT+TGG + chr5_3:61181953-61181972 Msa0822800:intron 45.0%
ACGGTGCATTTGCCAAATCA+AGG + chr5_3:61181984-61182003 Msa0822800:intron 45.0%
GTGCATTTGCCAAATCAAGG+TGG + chr5_3:61181987-61182006 Msa0822800:intron 45.0%
!! CAAGGAAGGTTGATGACTTG+AGG + chr5_3:61182085-61182104 Msa0822800:CDS 45.0%
GTTGTCATCCTATGTACTGC+AGG + chr5_3:61182133-61182152 Msa0822800:CDS 45.0%
TGTCATCCTATGTACTGCAG+GGG + chr5_3:61182135-61182154 Msa0822800:CDS 45.0%
!! TGAGCTCTAGATGCAAGAAG+AGG - chr5_3:61182183-61182202 None:intergenic 45.0%
! TCTTCTTGCATCTAGAGCTC+AGG + chr5_3:61182182-61182201 Msa0822800:CDS 45.0%
TGTCATTCTTGGAGAAACCG+GGG + chr5_3:61182373-61182392 Msa0822800:CDS 45.0%
GAAGAATTGCTTAGAGGTCC+AGG + chr5_3:61182470-61182489 Msa0822800:CDS 45.0%
! TCATCTCTTTGGTAGCTTCC+TGG - chr5_3:61182491-61182510 None:intergenic 45.0%
!! GCAACAAGAGCACTCTCATT+TGG - chr5_3:61182521-61182540 None:intergenic 45.0%
CGGTCGATAGTATAGCCTCA+AGG - chr5_3:61177479-61177498 None:intergenic 50.0%
TTGTCCGAAGAGTTGTCGGA+AGG + chr5_3:61178136-61178155 Msa0822800:CDS 50.0%
TCGGAAGGAGAAAAGGGAGA+TGG + chr5_3:61178151-61178170 Msa0822800:CDS 50.0%
GGAGAAAAGGGAGATGGCAT+TGG + chr5_3:61178157-61178176 Msa0822800:CDS 50.0%
CGAGGAGAAAACATGGAGCT+TGG + chr5_3:61178681-61178700 Msa0822800:CDS 50.0%
TGCTCGTGCACTTGCGAAAA+CGG + chr5_3:61178824-61178843 Msa0822800:CDS 50.0%
! ATGATAGCACTGGAGAGAGC+AGG + chr5_3:61178961-61178980 Msa0822800:CDS 50.0%
! TGATAGCACTGGAGAGAGCA+GGG + chr5_3:61178962-61178981 Msa0822800:CDS 50.0%
! GTATTGGGCGAACAAGTTGG+CGG + chr5_3:61179107-61179126 Msa0822800:CDS 50.0%
CATGGACACTATGCTGATGC+TGG + chr5_3:61179158-61179177 Msa0822800:CDS 50.0%
! GACAGTGCTGCTCTTCTTTC+GGG + chr5_3:61179182-61179201 Msa0822800:CDS 50.0%
! GGGTGCTTTGAATGTGCCAA+TGG + chr5_3:61179202-61179221 Msa0822800:CDS 50.0%
AGAAGCAGAGGAGCTTTCCT+TGG + chr5_3:61179331-61179350 Msa0822800:CDS 50.0%
GACAAGTTCTGCAGCATCCA+AGG - chr5_3:61179351-61179370 None:intergenic 50.0%
! AAGTTTTGCGTGCCCGTGAT+AGG + chr5_3:61179441-61179460 Msa0822800:CDS 50.0%
AATTGACGCCACGCCTATCA+CGG - chr5_3:61179457-61179476 None:intergenic 50.0%
ATACCAGGAGGGATAACCTG+CGG - chr5_3:61179745-61179764 None:intergenic 50.0%
TGCTGAAGTCCATACCAGGA+GGG - chr5_3:61179756-61179775 None:intergenic 50.0%
TTGCTGAAGTCCATACCAGG+AGG - chr5_3:61179757-61179776 None:intergenic 50.0%
!! AGAGATCTCCGTCGACTTCA+GGG - chr5_3:61179801-61179820 None:intergenic 50.0%
GGAGATCTCTCACAGCTTAC+TGG + chr5_3:61179811-61179830 Msa0822800:CDS 50.0%
!! CAGCTTACTGGTGTTGCTGA+TGG + chr5_3:61179823-61179842 Msa0822800:CDS 50.0%
TGTTGGAGCTCAAGTGTGAG+CGG + chr5_3:61179910-61179929 Msa0822800:intron 50.0%
!!! AACCGGTCCGCCATTTTTAG+TGG - chr5_3:61180871-61180890 None:intergenic 50.0%
GCGGACCGGTTGACATTAAT+CGG + chr5_3:61180880-61180899 Msa0822800:CDS 50.0%
CGGACCGGTTGACATTAATC+GGG + chr5_3:61180881-61180900 Msa0822800:CDS 50.0%
AGTGTTCAGGCCACGAGAAA+AGG - chr5_3:61181140-61181159 None:intergenic 50.0%
CCGAACTTATTTGACACGCG+TGG + chr5_3:61181161-61181180 Msa0822800:CDS 50.0%
!! GAATTTGCTGCATCAAGCGG+TGG + chr5_3:61181312-61181331 Msa0822800:CDS 50.0%
TGCGCCTTCGCCTTAATAGA+GGG - chr5_3:61181440-61181459 None:intergenic 50.0%
CCCGAAACTCTTGCAGTTTG+AGG - chr5_3:61181564-61181583 None:intergenic 50.0%
CGTCTTCTGTGTGAACACCA+GGG - chr5_3:61181704-61181723 None:intergenic 50.0%
CCTGGTGTTCACACAGAAGA+CGG + chr5_3:61181702-61181721 Msa0822800:CDS 50.0%
CTGGTGTTCACACAGAAGAC+GGG + chr5_3:61181703-61181722 Msa0822800:CDS 50.0%
!! GATTATCGTTGGGGCGTTGA+AGG + chr5_3:61181762-61181781 Msa0822800:CDS 50.0%
AGGCAAAAGCTTCGGATGAG+AGG + chr5_3:61182105-61182124 Msa0822800:CDS 50.0%
GTCATCCTATGTACTGCAGG+GGG + chr5_3:61182136-61182155 Msa0822800:CDS 50.0%
TTCCTCGTAATCAGTGTCCC+CGG - chr5_3:61182393-61182412 None:intergenic 50.0%
GAGCAAGCAAAAATACGGCC+CGG - chr5_3:61182750-61182769 None:intergenic 50.0%
GAGGCTATACTATCGACCGG+TGG + chr5_3:61177480-61177499 Msa0822800:CDS 55.0%
GCTATACTATCGACCGGTGG+TGG + chr5_3:61177483-61177502 Msa0822800:CDS 55.0%
CACCGTGGAAGAGCAGCAAA+GGG + chr5_3:61177515-61177534 Msa0822800:CDS 55.0%
CACCCTTTGCTGCTCTTCCA+CGG - chr5_3:61177520-61177539 None:intergenic 55.0%
! TCAGAGGCATGCTTCTAGCC+AGG + chr5_3:61178216-61178235 Msa0822800:CDS 55.0%
GTGCACTTGCGAAAACGGCA+GGG + chr5_3:61178829-61178848 Msa0822800:CDS 55.0%
TGCACTTGCGAAAACGGCAG+GGG + chr5_3:61178830-61178849 Msa0822800:CDS 55.0%
! GATAGCACTGGAGAGAGCAG+GGG + chr5_3:61178963-61178982 Msa0822800:CDS 55.0%
!! TTAAGCAAGGGCGCCAATCG+TGG + chr5_3:61179270-61179289 Msa0822800:CDS 55.0%
!! TAAGCAAGGGCGCCAATCGT+GGG + chr5_3:61179271-61179290 Msa0822800:CDS 55.0%
ATTGACGCCACGCCTATCAC+GGG - chr5_3:61179456-61179475 None:intergenic 55.0%
AGGCGTGGCGTCAATTGTCA+TGG + chr5_3:61179461-61179480 Msa0822800:CDS 55.0%
TTTCCGCAGGTTATCCCTCC+TGG + chr5_3:61179739-61179758 Msa0822800:intron 55.0%
GCAGGTTATCCCTCCTGGTA+TGG + chr5_3:61179744-61179763 Msa0822800:intron 55.0%
GAAGATGGCCCTGAAGTCGA+CGG + chr5_3:61179790-61179809 Msa0822800:CDS 55.0%
!! GAGAGATCTCCGTCGACTTC+AGG - chr5_3:61179802-61179821 None:intergenic 55.0%
! AGCTGCACATGGACTGCCAA+TGG + chr5_3:61180842-61180861 Msa0822800:CDS 55.0%
! TGCACATGGACTGCCAATGG+TGG + chr5_3:61180845-61180864 Msa0822800:CDS 55.0%
!! GGCCACTAAAAATGGCGGAC+CGG + chr5_3:61180866-61180885 Msa0822800:CDS 55.0%
GCGTGGATGCGTGTAGAATG+AGG + chr5_3:61181178-61181197 Msa0822800:CDS 55.0%
CTGCGCCTTCGCCTTAATAG+AGG - chr5_3:61181441-61181460 None:intergenic 55.0%
! CTCTATTAAGGCGAAGGCGC+AGG + chr5_3:61181439-61181458 Msa0822800:CDS 55.0%
CCGTCTTCTGTGTGAACACC+AGG - chr5_3:61181705-61181724 None:intergenic 55.0%
CACGGTGAGCCACCTTGATT+TGG - chr5_3:61181999-61182018 None:intergenic 55.0%
GAAGACCCCCTGCAGTACAT+AGG - chr5_3:61182144-61182163 None:intergenic 55.0%
! CATCTAGAGCTCAGGCACTC+AGG + chr5_3:61182190-61182209 Msa0822800:CDS 55.0%
! AACCGGGGACACTGATTACG+AGG + chr5_3:61182388-61182407 Msa0822800:CDS 55.0%
!! GGTGGTAGAAGCACCACCAC+CGG - chr5_3:61177499-61177518 None:intergenic 60.0%
! TGGTGGTGCTTCTACCACCG+TGG + chr5_3:61177500-61177519 Msa0822800:CDS 60.0%
CCTTTGCTGCTCTTCCACGG+TGG - chr5_3:61177517-61177536 None:intergenic 60.0%
CCACCGTGGAAGAGCAGCAA+AGG + chr5_3:61177514-61177533 Msa0822800:CDS 60.0%
CGTGGAAGAGCAGCAAAGGG+TGG + chr5_3:61177518-61177537 Msa0822800:CDS 60.0%
GGAAGAGCAGCAAAGGGTGG+CGG + chr5_3:61177521-61177540 Msa0822800:CDS 60.0%
GCGGCTGCAGCTAGAGAAAG+TGG + chr5_3:61177540-61177559 Msa0822800:CDS 60.0%
AGGACGAAGGGATGCAACCG+AGG + chr5_3:61178111-61178130 Msa0822800:CDS 60.0%
CGTGCACTTGCGAAAACGGC+AGG + chr5_3:61178828-61178847 Msa0822800:CDS 60.0%
! TTGGGCGAACAAGTTGGCGG+TGG + chr5_3:61179110-61179129 Msa0822800:CDS 60.0%
TTGGCGGTGGACAACCTGTG+TGG + chr5_3:61179123-61179142 Msa0822800:CDS 60.0%
CTCACTCAGGCAGCTGCACA+TGG + chr5_3:61180831-61180850 Msa0822800:intron 60.0%
AGGGGTCGGGGTTCGAACAT+CGG - chr5_3:61182861-61182880 None:intergenic 60.0%
TTGCGTGCCCGTGATAGGCG+TGG + chr5_3:61179446-61179465 Msa0822800:CDS 65.0%
!! GCAAGGGCGCCAATCGTGGG+AGG + chr5_3:61179274-61179293 Msa0822800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 61177224 61182882 61177224 ID=Msa0822800;Name=Msa0822800
chr5_3 mRNA 61177224 61182882 61177224 ID=Msa0822800-mRNA-1;Parent=Msa0822800;Name=Msa0822800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|1|1|0.91|0.84|13|269|1057
chr5_3 exon 61177224 61177370 61177224 ID=Msa0822800-mRNA-1:exon:18805;Parent=Msa0822800-mRNA-1
chr5_3 exon 61177394 61177737 61177394 ID=Msa0822800-mRNA-1:exon:18806;Parent=Msa0822800-mRNA-1
chr5_3 exon 61178058 61178290 61178058 ID=Msa0822800-mRNA-1:exon:18807;Parent=Msa0822800-mRNA-1
chr5_3 exon 61178665 61178728 61178665 ID=Msa0822800-mRNA-1:exon:18808;Parent=Msa0822800-mRNA-1
chr5_3 exon 61178804 61179505 61178804 ID=Msa0822800-mRNA-1:exon:18809;Parent=Msa0822800-mRNA-1
chr5_3 exon 61179748 61179882 61179748 ID=Msa0822800-mRNA-1:exon:18810;Parent=Msa0822800-mRNA-1
chr5_3 exon 61180210 61180341 61180210 ID=Msa0822800-mRNA-1:exon:18811;Parent=Msa0822800-mRNA-1
chr5_3 exon 61180437 61180613 61180437 ID=Msa0822800-mRNA-1:exon:18812;Parent=Msa0822800-mRNA-1
chr5_3 exon 61180699 61180752 61180699 ID=Msa0822800-mRNA-1:exon:18813;Parent=Msa0822800-mRNA-1
chr5_3 exon 61180840 61180902 61180840 ID=Msa0822800-mRNA-1:exon:18814;Parent=Msa0822800-mRNA-1
chr5_3 exon 61181012 61181923 61181012 ID=Msa0822800-mRNA-1:exon:18815;Parent=Msa0822800-mRNA-1
chr5_3 exon 61182084 61182211 61182084 ID=Msa0822800-mRNA-1:exon:18816;Parent=Msa0822800-mRNA-1
chr5_3 exon 61182331 61182882 61182331 ID=Msa0822800-mRNA-1:exon:18817;Parent=Msa0822800-mRNA-1
chr5_3 five_prime_UTR 61177224 61177370 61177224 ID=Msa0822800-mRNA-1:five_prime_utr;Parent=Msa0822800-mRNA-1
chr5_3 five_prime_UTR 61177394 61177446 61177394 ID=Msa0822800-mRNA-1:five_prime_utr;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61177447 61177737 61177447 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61178058 61178290 61178058 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61178665 61178728 61178665 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61178804 61179505 61178804 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61179748 61179882 61179748 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61180210 61180341 61180210 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61180437 61180613 61180437 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61180699 61180752 61180699 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61180840 61180902 61180840 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61181012 61181923 61181012 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61182084 61182211 61182084 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 CDS 61182331 61182613 61182331 ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3 three_prime_UTR 61182614 61182882 61182614 ID=Msa0822800-mRNA-1:three_prime_utr;Parent=Msa0822800-mRNA-1
Gene Sequence

>Msa0822800

ATGGCTGGTAATGAGTGGATTAATGGCTACCTTGAGGCTATACTATCGACCGGTGGTGGTGCTTCTACCACCGTGGAAGAGCAGCAAAGGGTGGCGGCTGCAGCTAGAGAAAGTGGTGATCATTTCAATCCAACAAAATATTTTGTTGAAGAAGTAGTGAGTGCTGTTGATGAGTCTGATCTTCATCGTACATGGCTTAAGGTTGTTGCCACTCGTAATACAAGGGAACGTAGCTCAAGACTCGAGAACATGTGTTGGCGTATTTGGCATCTTGCTCGCAAGAAGAAGAAGGTGGAAGGAGAAGAACTTCAAAGGTTAGCATACAGAAGATGGGAAATAGAACAAGGACGAAGGGATGCAACCGAGGATTTGTCCGAAGAGTTGTCGGAAGGAGAAAAGGGAGATGGCATTGGGGAGATAATACAAATAGAGACTCAACAGAAAAAACTTCAGAGGCATGCTTCTAGCCAGGAAATATGGTCTGATGATAAAAAGGAAAAGAAACTTTATATTATCCTCTTAAGTTTGCATGGATTGGTACGAGGAGAAAACATGGAGCTTGGTAGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTAGAACTTGCTCGTGCACTTGCGAAAACGGCAGGGGTATATAGAGTAGATCTCTTCACGCGCCAAATATCATCTCCTGACATTGATTGGAGCTATGGAGAACCTACAGAAATGCTATCTGCAGGTCCAGATGATAATGATGAGGATGATAGCACTGGAGAGAGCAGGGGTGCATATATCATAAGAATACCCTTCGGTCCACGCGATAAATATCTTGAGAAAGAACTTCTTTGGCCTCACATTCAAGAATTTGTAGATGGAGCCTTAGCTCACATTCTCAACATGTCAAAAGTATTGGGCGAACAAGTTGGCGGTGGACAACCTGTGTGGCCTTATGTGATTCATGGACACTATGCTGATGCTGGTGACAGTGCTGCTCTTCTTTCGGGTGCTTTGAATGTGCCAATGGTTCTCACTGGTCATTCACTTGGAAGAAACAAACTTGAACAACTTCTTAAGCAAGGGCGCCAATCGTGGGAGGATATCAACTCAACGTATAAGATAATGAGAAGGATAGAAGCAGAGGAGCTTTCCTTGGATGCTGCAGAACTTGTCATCACTAGTACAAGACAAGAAATTGATGAACAATGGGGACTTTATGATGGGTTTGATGTCAAGCTTGAGAAAGTTTTGCGTGCCCGTGATAGGCGTGGCGTCAATTGTCATGGTCGTTACATGCCTAGAATGGCGGTTATCCCTCCTGGTATGGACTTCAGCAATGTCGTGATACAAGAAGATGGCCCTGAAGTCGACGGAGATCTCTCACAGCTTACTGGTGTTGCTGATGGATCTTCACCAAAAGCGTTACCTTCAATTTGGTTAGAAGTGATGCGTTTCTTCACAAATCCTCACAAGCCTATGATATTAGCCTTATCAAGGCCAGATCCAAAGAAGAACATAACAACTCTATTAAAGGCTTTTGGAGAAAATCGCTCCTTGAGAAAACTAGCCAATCTTACCCTTATAATGGGAAACAGAGATGACATAGAAGATATGTCTTCTGGGAGTGGCAGTGTTCTCACAACTGTGTTGAAACTGATTGACAAATATGACCTATATGGACATGTCGCATACCCTAAACATCATAGACAATCTGATGTACCTGAGATATATAGATTTGCTGCTAAAACAAAGGGAGTTTTCATAAATCCTGCTTTAGTGGAACCTTTTGGTCTTACTTTAATTGAGGCAGCTGCACATGGACTGCCAATGGTGGCCACTAAAAATGGCGGACCGGTTGACATTAATCGGGCTCTCAACAATGGTTTGCTTGTGGATCCTCATGATCATCAAGCAATTGCTGATGCATTACTCAAGTTGTTATCAGAGAAAAACCTATGGCATGAGTGCAGAAACAATGGTTGGAAGAATATACACCTTTTCTCGTGGCCTGAACACTGCCGAACTTATTTGACACGCGTGGATGCGTGTAGAATGAGGCATCCACAATGGCAAACTACTACTACTGAAGATGATGTAGATGTTGAAGAGTCTTTCAATGATTCACTTAAGGATGTTCAAGACATGTCCCTTAGGCTTTCAATTGATGGTGAATTTGCTGCATCAAGCGGTGGCAGTAACGAAGACCAAGTGAAACGTGTCTTAAGCAAGATAAGGAAGCAAGATTCTGGTTCAAATCATGAGAACATGTTGCTTGATAATGTATCAAACAAATACCCTCTATTAAGGCGAAGGCGCAGGTTGATTGTTATAGCACTTGATTCCTATGACAGTAATGGAGATCCTGATAAGAAGTTGATTGAGATAGTTCAAAGGATAATTAAAGCTGTTCAATTAGACCCTCAAACTGCAAGAGTTTCGGGATTCGCTTTGCTGACTGCTATGACAATGCAAGAAACAACGGAATTTCTAGCATCTGGAAATGTTCAAGTGAATGAATTTGATGCTATAGTTTGTAGTAGTGGGAGTGAAGTTTATTACCCTGGTGTTCACACAGAAGACGGGAAGCTTTTGCCTGATCAAGATTATTCAGTGCATATAGATTATCGTTGGGGCGTTGAAGGACTAAAGAATACAATTTGTAAACTTATGAATGCCTCTAATGGTGAAGAGACTAATGGAATAGCAACTAGTCCTCTTGAGGAAGATTTGAAGTCTAGTAACGCACATTGCATTTCATATAAAATAAATGATCCTAGCAAGGCAAGGAAGGTTGATGACTTGAGGCAAAAGCTTCGGATGAGAGGTCTACGTTGTCATCCTATGTACTGCAGGGGGTCTTCTAGAATGCATGTTATTCCTCTTCTTGCATCTAGAGCTCAGGCACTCAGGTATTTGTTCGTCCGTTGGAGATTAAATGTTGCAAACATGTATGTCATTCTTGGAGAAACCGGGGACACTGATTACGAGGAAATGATTTCTGGAACACACAAGACTATAATCATGAAAGGAGTTGTGTCTAAGGGTTCAGAAGAATTGCTTAGAGGTCCAGGAAGCTACCAAAGAGATGATGTTGTACCAAATGAGAGTGCTCTTGTTGCATGCATTAGTGAAACAACAGAGGAAAATATTGCCAACGCATTGAAGCAACTTTCAAAATCTGGAGGAATATGA
Protein sequence

>Msa0822800

MAGNEWINGYLEAILSTGGGASTTVEEQQRVAAAARESGDHFNPTKYFVEEVVSAVDESDLHRTWLKVVATRNTRERSSRLENMCWRIWHLARKKKKVEGEELQRLAYRRWEIEQGRRDATEDLSEELSEGEKGDGIGEIIQIETQQKKLQRHASSQEIWSDDKKEKKLYIILLSLHGLVRGENMELGRDSDTGGQIKYVVELARALAKTAGVYRVDLFTRQISSPDIDWSYGEPTEMLSAGPDDNDEDDSTGESRGAYIIRIPFGPRDKYLEKELLWPHIQEFVDGALAHILNMSKVLGEQVGGGQPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSWEDINSTYKIMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARDRRGVNCHGRYMPRMAVIPPGMDFSNVVIQEDGPEVDGDLSQLTGVADGSSPKALPSIWLEVMRFFTNPHKPMILALSRPDPKKNITTLLKAFGENRSLRKLANLTLIMGNRDDIEDMSSGSGSVLTTVLKLIDKYDLYGHVAYPKHHRQSDVPEIYRFAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDINRALNNGLLVDPHDHQAIADALLKLLSEKNLWHECRNNGWKNIHLFSWPEHCRTYLTRVDACRMRHPQWQTTTTEDDVDVEESFNDSLKDVQDMSLRLSIDGEFAASSGGSNEDQVKRVLSKIRKQDSGSNHENMLLDNVSNKYPLLRRRRRLIVIALDSYDSNGDPDKKLIEIVQRIIKAVQLDPQTARVSGFALLTAMTMQETTEFLASGNVQVNEFDAIVCSSGSEVYYPGVHTEDGKLLPDQDYSVHIDYRWGVEGLKNTICKLMNASNGEETNGIATSPLEEDLKSSNAHCISYKINDPSKARKVDDLRQKLRMRGLRCHPMYCRGSSRMHVIPLLASRAQALRYLFVRWRLNVANMYVILGETGDTDYEEMISGTHKTIIMKGVVSKGSEELLRGPGSYQRDDVVPNESALVACISETTEENIANALKQLSKSGGI*