AlfalfaGEDB | Msa0822800

M. sativa cultivar zhongmu-4 / Msa0822800

KEGG: K00696
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527
PFAM: PF00862.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822800	XP_003617418.1	98.677	1058	13	1	1	1057	1	1058	0.0	2156

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822800	sp\|Q8RY24\|SPSA3_ARATH	73.102	1067	267	11	1	1054	1	1060	0.0	1599

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822800	G7KD49	98.677	1058	13	1	1	1057	1	1058	0.0	2156

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0822800	0.894980	1.479779e-75	-8.615850e-47
Msa0001040	Msa0822800	0.881104	3.166834e-70	-8.615850e-47
Msa0001510	Msa0822800	0.852715	3.847358e-61	-8.615850e-47
Msa0002110	Msa0822800	0.832603	8.602002e-56	-8.615850e-47
Msa0002690	Msa0822800	0.876845	1.010026e-68	-8.615850e-47
Msa0002700	Msa0822800	0.869950	2.108298e-66	-8.615850e-47
Msa0003340	Msa0822800	0.845747	3.348927e-59	-8.615850e-47
Msa0003450	Msa0822800	0.807469	4.978574e-50	-8.615850e-47
Msa0004180	Msa0822800	0.838625	2.573058e-57	-8.615850e-47
Msa0007570	Msa0822800	0.868821	4.910939e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822800	MtrunA17_Chr5g0443091	98.677	1058	13	1	1	1057	1	1058	0.0	2156
Msa0822800	MtrunA17_Chr3g0096241	81.096	1058	186	7	1	1056	1	1046	0.0	1763
Msa0822800	MtrunA17_Chr4g0064501	56.308	1078	412	20	1	1048	1	1049	0.0	1147
Msa0822800	MtrunA17_Chr3g0109841	27.437	554	319	21	171	693	286	787	4.26e-41	163
Msa0822800	MtrunA17_Chr6g0481131	26.437	522	320	19	171	677	285	757	2.90e-37	151
Msa0822800	MtrunA17_Chr1g0195241	26.015	542	332	19	171	688	264	760	3.67e-37	150
Msa0822800	MtrunA17_Chr6g0481171	26.415	530	310	20	171	677	157	629	5.41e-37	150
Msa0822800	MtrunA17_Chr2g0301621	25.843	534	314	21	171	672	277	760	1.95e-36	148
Msa0822800	MtrunA17_Chr5g0433761	26.062	518	316	19	171	663	283	758	1.96e-35	145
Msa0822800	MtrunA17_Chr4g0070011	24.723	542	310	20	171	672	279	762	8.40e-35	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822800	AT1G04920.1	73.102	1067	267	11	1	1054	1	1060	0.0	1599
Msa0822800	AT4G10120.2	57.103	1070	390	13	1	1038	1	1033	0.0	1189
Msa0822800	AT4G10120.3	57.103	1070	390	13	1	1038	1	1033	0.0	1189
Msa0822800	AT4G10120.1	57.103	1070	390	13	1	1038	1	1033	0.0	1189
Msa0822800	AT5G20280.1	56.901	1065	418	18	1	1051	1	1038	0.0	1172
Msa0822800	AT5G11110.1	55.597	1072	429	17	1	1054	1	1043	0.0	1143
Msa0822800	AT4G10120.4	58.705	896	326	10	150	1038	1	859	0.0	1038
Msa0822800	AT4G10120.5	59.033	869	313	9	176	1038	1	832	0.0	1014
Msa0822800	AT1G73370.3	26.527	524	306	17	171	663	285	760	9.56e-39	157
Msa0822800	AT1G73370.1	26.527	524	306	17	171	663	285	760	9.56e-39	157

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Find 264 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTATGAATGCCTCTAA+TGG	0.444514	5_3:+61181804	Msa0822800:CDS
AAAGGTTAGCATACAGAAGA+TGG	0.439924	5_3:+61178077	Msa0822800:CDS
AAAGTATTGGGCGAACAAGT+TGG	0.553972	5_3:+61179104	Msa0822800:CDS
AAATAAGTTCGGCAGTGTTC+AGG	0.443986	5_3:-61181150	None:intergenic
AACAATGGGGACTTTATGAT+GGG	0.512391	5_3:+61179399	Msa0822800:CDS
AACCGGGGACACTGATTACG+AGG	0.645232	5_3:+61182388	Msa0822800:CDS
AACGTGTCTTAAGCAAGATA+AGG	0.570558	5_3:+61181355	Msa0822800:CDS
AACTTTATATTATCCTCTTA+AGG	0.347172	5_3:+61178269	Msa0822800:CDS
AAGATAAGGAAGCAAGATTC+TGG	0.437232	5_3:+61181369	Msa0822800:CDS
AAGCAACTTTCAAAATCTGG+AGG	0.616780	5_3:+61182584	Msa0822800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTAATGAGGCATATTTGT+AGG	+	chr5_3:61178036-61178055	Msa0822800:intron	30.0%
TTGAGGTGAACAAAGAATAA+GGG	-	chr5_3:61178534-61178553	None:intergenic	30.0%
TTTATACAGTTTGCATGGAT+TGG	+	chr5_3:61178656-61178675	Msa0822800:intron	30.0%
ATCTTGAGAAAGAACTTCTT+TGG	+	chr5_3:61179027-61179046	Msa0822800:CDS	30.0%
TCTACAAATTCTTGAATGTG+AGG	-	chr5_3:61179053-61179072	None:intergenic	30.0%
CACATTCAAGAATTTGTAGA+TGG	+	chr5_3:61179053-61179072	Msa0822800:CDS	30.0%
TTGAACAACTTCTTAAGCAA+GGG	+	chr5_3:61179258-61179277	Msa0822800:CDS	30.0%
CAACGTATAAGATAATGAGA+AGG	+	chr5_3:61179306-61179325	Msa0822800:CDS	30.0%
GACAAGAAATTGATGAACAA+TGG	+	chr5_3:61179384-61179403	Msa0822800:CDS	30.0%
CAAGAAATTGATGAACAATG+GGG	+	chr5_3:61179386-61179405	Msa0822800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	61177224	61182882	61177224	ID=Msa0822800;Name=Msa0822800
chr5_3	mRNA	61177224	61182882	61177224	ID=Msa0822800-mRNA-1;Parent=Msa0822800;Name=Msa0822800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200\|1\|1\|1\|0.91\|0.84\|13\|269\|1057
chr5_3	exon	61177224	61177370	61177224	ID=Msa0822800-mRNA-1:exon:18805;Parent=Msa0822800-mRNA-1
chr5_3	exon	61177394	61177737	61177394	ID=Msa0822800-mRNA-1:exon:18806;Parent=Msa0822800-mRNA-1
chr5_3	exon	61178058	61178290	61178058	ID=Msa0822800-mRNA-1:exon:18807;Parent=Msa0822800-mRNA-1
chr5_3	exon	61178665	61178728	61178665	ID=Msa0822800-mRNA-1:exon:18808;Parent=Msa0822800-mRNA-1
chr5_3	exon	61178804	61179505	61178804	ID=Msa0822800-mRNA-1:exon:18809;Parent=Msa0822800-mRNA-1
chr5_3	exon	61179748	61179882	61179748	ID=Msa0822800-mRNA-1:exon:18810;Parent=Msa0822800-mRNA-1
chr5_3	exon	61180210	61180341	61180210	ID=Msa0822800-mRNA-1:exon:18811;Parent=Msa0822800-mRNA-1
chr5_3	exon	61180437	61180613	61180437	ID=Msa0822800-mRNA-1:exon:18812;Parent=Msa0822800-mRNA-1
chr5_3	exon	61180699	61180752	61180699	ID=Msa0822800-mRNA-1:exon:18813;Parent=Msa0822800-mRNA-1
chr5_3	exon	61180840	61180902	61180840	ID=Msa0822800-mRNA-1:exon:18814;Parent=Msa0822800-mRNA-1
chr5_3	exon	61181012	61181923	61181012	ID=Msa0822800-mRNA-1:exon:18815;Parent=Msa0822800-mRNA-1
chr5_3	exon	61182084	61182211	61182084	ID=Msa0822800-mRNA-1:exon:18816;Parent=Msa0822800-mRNA-1
chr5_3	exon	61182331	61182882	61182331	ID=Msa0822800-mRNA-1:exon:18817;Parent=Msa0822800-mRNA-1
chr5_3	five_prime_UTR	61177224	61177370	61177224	ID=Msa0822800-mRNA-1:five_prime_utr;Parent=Msa0822800-mRNA-1
chr5_3	five_prime_UTR	61177394	61177446	61177394	ID=Msa0822800-mRNA-1:five_prime_utr;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61177447	61177737	61177447	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61178058	61178290	61178058	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61178665	61178728	61178665	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61178804	61179505	61178804	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61179748	61179882	61179748	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61180210	61180341	61180210	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61180437	61180613	61180437	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61180699	61180752	61180699	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61180840	61180902	61180840	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61181012	61181923	61181012	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61182084	61182211	61182084	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	CDS	61182331	61182613	61182331	ID=Msa0822800-mRNA-1:cds;Parent=Msa0822800-mRNA-1
chr5_3	three_prime_UTR	61182614	61182882	61182614	ID=Msa0822800-mRNA-1:three_prime_utr;Parent=Msa0822800-mRNA-1

Gene Sequence

>Msa0822800

ATGGCTGGTAATGAGTGGATTAATGGCTACCTTGAGGCTATACTATCGACCGGTGGTGGTGCTTCTACCACCGTGGAAGAGCAGCAAAGGGTGGCGGCTGCAGCTAGAGAAAGTGGTGATCATTTCAATCCAACAAAATATTTTGTTGAAGAAGTAGTGAGTGCTGTTGATGAGTCTGATCTTCATCGTACATGGCTTAAGGTTGTTGCCACTCGTAATACAAGGGAACGTAGCTCAAGACTCGAGAACATGTGTTGGCGTATTTGGCATCTTGCTCGCAAGAAGAAGAAGGTGGAAGGAGAAGAACTTCAAAGGTTAGCATACAGAAGATGGGAAATAGAACAAGGACGAAGGGATGCAACCGAGGATTTGTCCGAAGAGTTGTCGGAAGGAGAAAAGGGAGATGGCATTGGGGAGATAATACAAATAGAGACTCAACAGAAAAAACTTCAGAGGCATGCTTCTAGCCAGGAAATATGGTCTGATGATAAAAAGGAAAAGAAACTTTATATTATCCTCTTAAGTTTGCATGGATTGGTACGAGGAGAAAACATGGAGCTTGGTAGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTAGAACTTGCTCGTGCACTTGCGAAAACGGCAGGGGTATATAGAGTAGATCTCTTCACGCGCCAAATATCATCTCCTGACATTGATTGGAGCTATGGAGAACCTACAGAAATGCTATCTGCAGGTCCAGATGATAATGATGAGGATGATAGCACTGGAGAGAGCAGGGGTGCATATATCATAAGAATACCCTTCGGTCCACGCGATAAATATCTTGAGAAAGAACTTCTTTGGCCTCACATTCAAGAATTTGTAGATGGAGCCTTAGCTCACATTCTCAACATGTCAAAAGTATTGGGCGAACAAGTTGGCGGTGGACAACCTGTGTGGCCTTATGTGATTCATGGACACTATGCTGATGCTGGTGACAGTGCTGCTCTTCTTTCGGGTGCTTTGAATGTGCCAATGGTTCTCACTGGTCATTCACTTGGAAGAAACAAACTTGAACAACTTCTTAAGCAAGGGCGCCAATCGTGGGAGGATATCAACTCAACGTATAAGATAATGAGAAGGATAGAAGCAGAGGAGCTTTCCTTGGATGCTGCAGAACTTGTCATCACTAGTACAAGACAAGAAATTGATGAACAATGGGGACTTTATGATGGGTTTGATGTCAAGCTTGAGAAAGTTTTGCGTGCCCGTGATAGGCGTGGCGTCAATTGTCATGGTCGTTACATGCCTAGAATGGCGGTTATCCCTCCTGGTATGGACTTCAGCAATGTCGTGATACAAGAAGATGGCCCTGAAGTCGACGGAGATCTCTCACAGCTTACTGGTGTTGCTGATGGATCTTCACCAAAAGCGTTACCTTCAATTTGGTTAGAAGTGATGCGTTTCTTCACAAATCCTCACAAGCCTATGATATTAGCCTTATCAAGGCCAGATCCAAAGAAGAACATAACAACTCTATTAAAGGCTTTTGGAGAAAATCGCTCCTTGAGAAAACTAGCCAATCTTACCCTTATAATGGGAAACAGAGATGACATAGAAGATATGTCTTCTGGGAGTGGCAGTGTTCTCACAACTGTGTTGAAACTGATTGACAAATATGACCTATATGGACATGTCGCATACCCTAAACATCATAGACAATCTGATGTACCTGAGATATATAGATTTGCTGCTAAAACAAAGGGAGTTTTCATAAATCCTGCTTTAGTGGAACCTTTTGGTCTTACTTTAATTGAGGCAGCTGCACATGGACTGCCAATGGTGGCCACTAAAAATGGCGGACCGGTTGACATTAATCGGGCTCTCAACAATGGTTTGCTTGTGGATCCTCATGATCATCAAGCAATTGCTGATGCATTACTCAAGTTGTTATCAGAGAAAAACCTATGGCATGAGTGCAGAAACAATGGTTGGAAGAATATACACCTTTTCTCGTGGCCTGAACACTGCCGAACTTATTTGACACGCGTGGATGCGTGTAGAATGAGGCATCCACAATGGCAAACTACTACTACTGAAGATGATGTAGATGTTGAAGAGTCTTTCAATGATTCACTTAAGGATGTTCAAGACATGTCCCTTAGGCTTTCAATTGATGGTGAATTTGCTGCATCAAGCGGTGGCAGTAACGAAGACCAAGTGAAACGTGTCTTAAGCAAGATAAGGAAGCAAGATTCTGGTTCAAATCATGAGAACATGTTGCTTGATAATGTATCAAACAAATACCCTCTATTAAGGCGAAGGCGCAGGTTGATTGTTATAGCACTTGATTCCTATGACAGTAATGGAGATCCTGATAAGAAGTTGATTGAGATAGTTCAAAGGATAATTAAAGCTGTTCAATTAGACCCTCAAACTGCAAGAGTTTCGGGATTCGCTTTGCTGACTGCTATGACAATGCAAGAAACAACGGAATTTCTAGCATCTGGAAATGTTCAAGTGAATGAATTTGATGCTATAGTTTGTAGTAGTGGGAGTGAAGTTTATTACCCTGGTGTTCACACAGAAGACGGGAAGCTTTTGCCTGATCAAGATTATTCAGTGCATATAGATTATCGTTGGGGCGTTGAAGGACTAAAGAATACAATTTGTAAACTTATGAATGCCTCTAATGGTGAAGAGACTAATGGAATAGCAACTAGTCCTCTTGAGGAAGATTTGAAGTCTAGTAACGCACATTGCATTTCATATAAAATAAATGATCCTAGCAAGGCAAGGAAGGTTGATGACTTGAGGCAAAAGCTTCGGATGAGAGGTCTACGTTGTCATCCTATGTACTGCAGGGGGTCTTCTAGAATGCATGTTATTCCTCTTCTTGCATCTAGAGCTCAGGCACTCAGGTATTTGTTCGTCCGTTGGAGATTAAATGTTGCAAACATGTATGTCATTCTTGGAGAAACCGGGGACACTGATTACGAGGAAATGATTTCTGGAACACACAAGACTATAATCATGAAAGGAGTTGTGTCTAAGGGTTCAGAAGAATTGCTTAGAGGTCCAGGAAGCTACCAAAGAGATGATGTTGTACCAAATGAGAGTGCTCTTGTTGCATGCATTAGTGAAACAACAGAGGAAAATATTGCCAACGCATTGAAGCAACTTTCAAAATCTGGAGGAATATGA

Protein sequence

>Msa0822800

MAGNEWINGYLEAILSTGGGASTTVEEQQRVAAAARESGDHFNPTKYFVEEVVSAVDESDLHRTWLKVVATRNTRERSSRLENMCWRIWHLARKKKKVEGEELQRLAYRRWEIEQGRRDATEDLSEELSEGEKGDGIGEIIQIETQQKKLQRHASSQEIWSDDKKEKKLYIILLSLHGLVRGENMELGRDSDTGGQIKYVVELARALAKTAGVYRVDLFTRQISSPDIDWSYGEPTEMLSAGPDDNDEDDSTGESRGAYIIRIPFGPRDKYLEKELLWPHIQEFVDGALAHILNMSKVLGEQVGGGQPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSWEDINSTYKIMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARDRRGVNCHGRYMPRMAVIPPGMDFSNVVIQEDGPEVDGDLSQLTGVADGSSPKALPSIWLEVMRFFTNPHKPMILALSRPDPKKNITTLLKAFGENRSLRKLANLTLIMGNRDDIEDMSSGSGSVLTTVLKLIDKYDLYGHVAYPKHHRQSDVPEIYRFAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDINRALNNGLLVDPHDHQAIADALLKLLSEKNLWHECRNNGWKNIHLFSWPEHCRTYLTRVDACRMRHPQWQTTTTEDDVDVEESFNDSLKDVQDMSLRLSIDGEFAASSGGSNEDQVKRVLSKIRKQDSGSNHENMLLDNVSNKYPLLRRRRRLIVIALDSYDSNGDPDKKLIEIVQRIIKAVQLDPQTARVSGFALLTAMTMQETTEFLASGNVQVNEFDAIVCSSGSEVYYPGVHTEDGKLLPDQDYSVHIDYRWGVEGLKNTICKLMNASNGEETNGIATSPLEEDLKSSNAHCISYKINDPSKARKVDDLRQKLRMRGLRCHPMYCRGSSRMHVIPLLASRAQALRYLFVRWRLNVANMYVILGETGDTDYEEMISGTHKTIIMKGVVSKGSEELLRGPGSYQRDDVVPNESALVACISETTEENIANALKQLSKSGGI*