AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180520 MtrunA17_Chr1g0204771 97.861 187 4 0 1 187 1 187 5.97e-137 380
Msa0180520 MtrunA17_Chr1g0204751 66.292 178 60 0 2 179 12 189 3.43e-92 267
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180520 AT5G43850.1 78.610 187 40 0 1 187 1 187 1.07e-110 314
Msa0180520 AT2G26400.3 65.556 180 62 0 2 181 27 206 9.31e-91 264
Msa0180520 AT2G26400.1 65.556 180 62 0 2 181 12 191 1.13e-90 263
Msa0180520 AT4G14710.5 64.407 177 63 0 2 178 14 190 1.52e-90 263
Msa0180520 AT4G14710.2 64.407 177 63 0 2 178 12 188 1.79e-90 263
Msa0180520 AT4G14710.1 64.407 177 63 0 2 178 12 188 1.79e-90 263
Msa0180520 AT4G14716.1 65.116 172 60 0 2 173 12 183 5.19e-89 259
Msa0180520 AT4G14710.3 64.045 178 63 1 2 178 12 189 1.10e-88 258
Msa0180520 AT2G26400.2 67.857 168 54 0 2 169 27 194 3.25e-88 258
Msa0180520 AT2G26400.4 67.857 168 54 0 2 169 12 179 3.64e-88 258
Msa0180520 AT4G14710.4 65.476 168 58 0 2 169 12 179 1.33e-87 255
Msa0180520 AT4G14710.6 64.912 171 60 0 8 178 1 171 3.45e-87 254
Msa0180520 AT4G14716.2 65.663 166 57 0 8 173 1 166 1.17e-85 250

Find 50 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAGGTCTTCTCCTCTT+AGG 0.227958 1_4:-68499918 None:intergenic
TGCTAGAAAGGAATACATTA+AGG 0.274694 1_4:+68499760 Msa0180520:CDS
TGATCATTCTCATAGTCATT+AGG 0.279982 1_4:-68498545 None:intergenic
GATCATTCTCATAGTCATTA+GGG 0.297534 1_4:-68498544 None:intergenic
GCAGTTAATGAGGTTGTTTA+TGG 0.306900 1_4:+68499691 Msa0180520:intron
ATGATCTGTAATGGAACTAT+TGG 0.317157 1_4:+68499873 Msa0180520:three_prime_UTR
CCCCAATGAATTTGTTTCCT+TGG 0.318267 1_4:+68498397 Msa0180520:CDS
TGTTCCACTTGCAGCTCATT+AGG 0.322239 1_4:+68499802 Msa0180520:CDS
ATGATTAATAACCTGCTAAT+TGG 0.327623 1_4:-68498421 None:intergenic
GTCCAAGGAAACAAATTCAT+TGG 0.347689 1_4:-68498399 None:intergenic
TAGAATTGGGAGTCTTATAC+TGG 0.362640 1_4:+68498513 Msa0180520:intron
TGAAGAGATTCGTTACTGTT+TGG 0.363134 1_4:+68499359 Msa0180520:CDS
ACGATCGCTGGATTCGCATT+TGG 0.379921 1_4:+68499415 Msa0180520:CDS
TCCAAGGAAACAAATTCATT+GGG 0.393021 1_4:-68498398 None:intergenic
TACCATGTAATTGTATCCTC+TGG 0.413679 1_4:-68498591 None:intergenic
TATAACTTTATGATCTGTAA+TGG 0.414692 1_4:+68499864 Msa0180520:three_prime_UTR
TTAATGTATTCCTTTCTAGC+AGG 0.416178 1_4:-68499758 None:intergenic
CTGGATTCGCATTTGGATCA+AGG 0.420712 1_4:+68499422 Msa0180520:CDS
CAGTTAATGAGGTTGTTTAT+GGG 0.429331 1_4:+68499692 Msa0180520:intron
ATTGTGACAGGCATGGTTCA+TGG 0.434271 1_4:+68498334 Msa0180520:intron
GCTAGAAAGGAATACATTAA+GGG 0.444455 1_4:+68499761 Msa0180520:CDS
GGAAGATAACCCTGCTAGAA+AGG 0.448092 1_4:+68499748 Msa0180520:CDS
ATATAGGTCTTCTCCTCTTA+GGG 0.453246 1_4:-68499917 None:intergenic
GTTTCCTTGGACCAATTAGC+AGG 0.487915 1_4:+68498410 Msa0180520:CDS
CTACACTGAGCACATTCATC+AGG 0.491343 1_4:+68499335 Msa0180520:CDS
CGTTACTGTTTGGAGGGAAG+TGG 0.493451 1_4:+68499369 Msa0180520:CDS
AAGGGCTTGACTGAGAAAAC+TGG 0.495479 1_4:+68499779 Msa0180520:CDS
TAGCCATGGTGAGGAAGTCT+TGG 0.507430 1_4:-68498374 None:intergenic
AGAGATTCGTTACTGTTTGG+AGG 0.508489 1_4:+68499362 Msa0180520:CDS
TAATGTATTCCTTTCTAGCA+GGG 0.526328 1_4:-68499757 None:intergenic
AAAATTGTTGCTCATAGTCA+TGG 0.530477 1_4:+68498236 Msa0180520:exon
ATTCGCATTTGGATCAAGGC+TGG 0.542481 1_4:+68499426 Msa0180520:CDS
AACCGATGGTAGATTCCTGC+TGG 0.548643 1_4:-68499465 None:intergenic
GGATTTACTTGATTTATGCC+CGG 0.551505 1_4:+68499275 Msa0180520:intron
CAAATTCATTGGGGTAGCCA+TGG 0.553222 1_4:-68498388 None:intergenic
GAGATTCGTTACTGTTTGGA+GGG 0.561571 1_4:+68499363 Msa0180520:CDS
TACCAGCAGGAATCTACCAT+CGG 0.565483 1_4:+68499463 Msa0180520:CDS
GAGGTTGTTTATGGGTGAGC+CGG 0.570174 1_4:+68499700 Msa0180520:CDS
CTAGCAGGGTTATCTTCCTG+TGG 0.575444 1_4:-68499743 None:intergenic
CGATTATATGCTGTCCACAC+CGG 0.591841 1_4:-68499719 None:intergenic
CGACACAAATAACTATGTGA+AGG 0.598188 1_4:+68499494 Msa0180520:CDS
ATAACCTGCTAATTGGTCCA+AGG 0.599536 1_4:-68498414 None:intergenic
TTGTGTCGAGAGTGAACCGA+TGG 0.605251 1_4:-68499479 None:intergenic
TGTTTATGGGTGAGCCGGTG+TGG 0.615047 1_4:+68499705 Msa0180520:CDS
GGGTCCTAATGAGCTGCAAG+TGG 0.616526 1_4:-68499806 None:intergenic
AGCCAGAGGATACAATTACA+TGG 0.637470 1_4:+68498589 Msa0180520:CDS
GACAGCATATAATCGACCAC+AGG 0.646228 1_4:+68499727 Msa0180520:CDS
TCATTGGGGTAGCCATGGTG+AGG 0.672207 1_4:-68498383 None:intergenic
GATCCAAGACTTCCTCACCA+TGG 0.679886 1_4:+68498371 Msa0180520:CDS
CCAAGGAAACAAATTCATTG+GGG 0.686962 1_4:-68498397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTAAGATTAATTCATA+AGG - chr1_4:68498289-68498308 None:intergenic 10.0%
!! ATTATCTAATATATTGTAAA+CGG + chr1_4:68498785-68498804 Msa0180520:intron 10.0%
!! TATATTAAGATTAATTCATA+AGG - chr1_4:68498289-68498308 None:intergenic 10.0%
!! ATTATCTAATATATTGTAAA+CGG + chr1_4:68498785-68498804 Msa0180520:intron 10.0%
!! TAATAATTAAAAATTGTGAC+AGG + chr1_4:68498322-68498341 Msa0180520:intron 15.0%
!!! AATTGTAATTTTTGTAGAAT+TGG + chr1_4:68498499-68498518 Msa0180520:intron 15.0%
!!! ATTGTAATTTTTGTAGAATT+GGG + chr1_4:68498500-68498519 Msa0180520:intron 15.0%
!! AATTAGTTGAAAATAACTTA+CGG + chr1_4:68498999-68499018 Msa0180520:intron 15.0%
!! TAATAATTAAAAATTGTGAC+AGG + chr1_4:68498322-68498341 Msa0180520:intron 15.0%
!!! AATTGTAATTTTTGTAGAAT+TGG + chr1_4:68498499-68498518 Msa0180520:intron 15.0%
!!! ATTGTAATTTTTGTAGAATT+GGG + chr1_4:68498500-68498519 Msa0180520:intron 15.0%
!! AATTAGTTGAAAATAACTTA+CGG + chr1_4:68498999-68499018 Msa0180520:intron 15.0%
!! ACATGTTATAAGATTAAAAC+AGG + chr1_4:68498747-68498766 Msa0180520:intron 20.0%
!! TTACATCAACAAAAATTTGA+AGG - chr1_4:68498811-68498830 None:intergenic 20.0%
!! TTTGTTGATGTAAATTTCTT+AGG + chr1_4:68498818-68498837 Msa0180520:intron 20.0%
!!! ATTTTGATTGTACTAATTGA+AGG + chr1_4:68499171-68499190 Msa0180520:intron 20.0%
!!! TTTTGATTGTACTAATTGAA+GGG + chr1_4:68499172-68499191 Msa0180520:intron 20.0%
!!! TCATAATTTTCAACTTTTTC+CGG - chr1_4:68499297-68499316 None:intergenic 20.0%
!!! TATAGTTGCATAGATTTTAA+GGG - chr1_4:68499829-68499848 None:intergenic 20.0%
!!! ATATAGTTGCATAGATTTTA+AGG - chr1_4:68499830-68499849 None:intergenic 20.0%
!! TATAACTTTATGATCTGTAA+TGG + chr1_4:68499864-68499883 Msa0180520:three_prime_UTR 20.0%
!!! TTTTAGGTTCATAGATATAT+AGG - chr1_4:68499936-68499955 None:intergenic 20.0%
!! ACATGTTATAAGATTAAAAC+AGG + chr1_4:68498747-68498766 Msa0180520:intron 20.0%
!! TTACATCAACAAAAATTTGA+AGG - chr1_4:68498811-68498830 None:intergenic 20.0%
!! TTTGTTGATGTAAATTTCTT+AGG + chr1_4:68498818-68498837 Msa0180520:intron 20.0%
!!! ATTTTGATTGTACTAATTGA+AGG + chr1_4:68499171-68499190 Msa0180520:intron 20.0%
!!! TTTTGATTGTACTAATTGAA+GGG + chr1_4:68499172-68499191 Msa0180520:intron 20.0%
!!! TCATAATTTTCAACTTTTTC+CGG - chr1_4:68499297-68499316 None:intergenic 20.0%
!!! TATAGTTGCATAGATTTTAA+GGG - chr1_4:68499829-68499848 None:intergenic 20.0%
!!! ATATAGTTGCATAGATTTTA+AGG - chr1_4:68499830-68499849 None:intergenic 20.0%
!! TATAACTTTATGATCTGTAA+TGG + chr1_4:68499864-68499883 Msa0180520:three_prime_UTR 20.0%
!!! TTTTAGGTTCATAGATATAT+AGG - chr1_4:68499936-68499955 None:intergenic 20.0%
! ATGATTAATAACCTGCTAAT+TGG - chr1_4:68498424-68498443 None:intergenic 25.0%
! TTTATTGTGACACAAGTTTA+AGG + chr1_4:68498473-68498492 Msa0180520:intron 25.0%
!! AAGTTATCTTTGAGAGTTTA+TGG + chr1_4:68498975-68498994 Msa0180520:intron 25.0%
! ATAGCTTATGAAAACAACTT+TGG - chr1_4:68499030-68499049 None:intergenic 25.0%
! ATTTCATCTTTCAAATGTTC+TGG + chr1_4:68499197-68499216 Msa0180520:intron 25.0%
! TTTCATCTTTCAAATGTTCT+GGG + chr1_4:68499198-68499217 Msa0180520:intron 25.0%
! GTACTATTTGAATATGTTGT+AGG + chr1_4:68499254-68499273 Msa0180520:intron 25.0%
!!! CATAATTTTCAACTTTTTCC+GGG - chr1_4:68499296-68499315 None:intergenic 25.0%
! TTGATCAAGAAATTTATAGG+TGG - chr1_4:68499524-68499543 None:intergenic 25.0%
! ACCTATAAATTTCTTGATCA+AGG + chr1_4:68499523-68499542 Msa0180520:intron 25.0%
! TTGAAATTGATCAAGATTCA+AGG + chr1_4:68499609-68499628 Msa0180520:intron 25.0%
! AACCTAAAACAGATAAAGTA+TGG + chr1_4:68499947-68499966 Msa0180520:intron 25.0%
! ACCTAAAACAGATAAAGTAT+GGG + chr1_4:68499948-68499967 Msa0180520:intron 25.0%
! ATGATTAATAACCTGCTAAT+TGG - chr1_4:68498424-68498443 None:intergenic 25.0%
! TTTATTGTGACACAAGTTTA+AGG + chr1_4:68498473-68498492 Msa0180520:intron 25.0%
!! AAGTTATCTTTGAGAGTTTA+TGG + chr1_4:68498975-68498994 Msa0180520:intron 25.0%
! ATAGCTTATGAAAACAACTT+TGG - chr1_4:68499030-68499049 None:intergenic 25.0%
! ATTTCATCTTTCAAATGTTC+TGG + chr1_4:68499197-68499216 Msa0180520:intron 25.0%
! TTTCATCTTTCAAATGTTCT+GGG + chr1_4:68499198-68499217 Msa0180520:intron 25.0%
! GTACTATTTGAATATGTTGT+AGG + chr1_4:68499254-68499273 Msa0180520:intron 25.0%
!!! CATAATTTTCAACTTTTTCC+GGG - chr1_4:68499296-68499315 None:intergenic 25.0%
! TTGATCAAGAAATTTATAGG+TGG - chr1_4:68499524-68499543 None:intergenic 25.0%
! ACCTATAAATTTCTTGATCA+AGG + chr1_4:68499523-68499542 Msa0180520:intron 25.0%
! TTGAAATTGATCAAGATTCA+AGG + chr1_4:68499609-68499628 Msa0180520:intron 25.0%
! AACCTAAAACAGATAAAGTA+TGG + chr1_4:68499947-68499966 Msa0180520:intron 25.0%
! ACCTAAAACAGATAAAGTAT+GGG + chr1_4:68499948-68499967 Msa0180520:intron 25.0%
AAAATTGTTGCTCATAGTCA+TGG + chr1_4:68498236-68498255 Msa0180520:exon 30.0%
ATTAAAAATTGTGACAGGCA+TGG + chr1_4:68498327-68498346 Msa0180520:intron 30.0%
TCCAAGGAAACAAATTCATT+GGG - chr1_4:68498401-68498420 None:intergenic 30.0%
GATCATTCTCATAGTCATTA+GGG - chr1_4:68498547-68498566 None:intergenic 30.0%
TGATCATTCTCATAGTCATT+AGG - chr1_4:68498548-68498567 None:intergenic 30.0%
! TTTCTAGTGATACCATTACA+TGG + chr1_4:68498674-68498693 Msa0180520:intron 30.0%
CTTTCAATCTTACCATGTAA+TGG - chr1_4:68498689-68498708 None:intergenic 30.0%
TTACATGGTAAGATTGAAAG+TGG + chr1_4:68498689-68498708 Msa0180520:intron 30.0%
!!! TGAAAGTGGATTTTTTCTTG+TGG + chr1_4:68498703-68498722 Msa0180520:intron 30.0%
!!! GAAAGTGGATTTTTTCTTGT+GGG + chr1_4:68498704-68498723 Msa0180520:intron 30.0%
ATAAGTTGTTTACCTAACAG+TGG - chr1_4:68498872-68498891 None:intergenic 30.0%
GAGCTCAAATAAGTCAATTT+AGG + chr1_4:68499085-68499104 Msa0180520:intron 30.0%
GTACAATCAAAATGTTCAAC+AGG - chr1_4:68499164-68499183 None:intergenic 30.0%
GCCTTGATCAAGAAATTTAT+AGG - chr1_4:68499527-68499546 None:intergenic 30.0%
!! TTGATCAAGGCTTCATTTTT+GGG + chr1_4:68499536-68499555 Msa0180520:intron 30.0%
CAGTTAATGAGGTTGTTTAT+GGG + chr1_4:68499692-68499711 Msa0180520:intron 30.0%
! TAATGTATTCCTTTCTAGCA+GGG - chr1_4:68499760-68499779 None:intergenic 30.0%
! TTAATGTATTCCTTTCTAGC+AGG - chr1_4:68499761-68499780 None:intergenic 30.0%
TGCTAGAAAGGAATACATTA+AGG + chr1_4:68499760-68499779 Msa0180520:CDS 30.0%
GCTAGAAAGGAATACATTAA+GGG + chr1_4:68499761-68499780 Msa0180520:CDS 30.0%
! ATGATCTGTAATGGAACTAT+TGG + chr1_4:68499873-68499892 Msa0180520:three_prime_UTR 30.0%
! TGTATAGATTTTACCCTAAG+AGG + chr1_4:68499904-68499923 Msa0180520:three_prime_UTR 30.0%
! TCCCATACTTTATCTGTTTT+AGG - chr1_4:68499952-68499971 None:intergenic 30.0%
AAAATTGTTGCTCATAGTCA+TGG + chr1_4:68498236-68498255 Msa0180520:exon 30.0%
ATTAAAAATTGTGACAGGCA+TGG + chr1_4:68498327-68498346 Msa0180520:intron 30.0%
TCCAAGGAAACAAATTCATT+GGG - chr1_4:68498401-68498420 None:intergenic 30.0%
GATCATTCTCATAGTCATTA+GGG - chr1_4:68498547-68498566 None:intergenic 30.0%
TGATCATTCTCATAGTCATT+AGG - chr1_4:68498548-68498567 None:intergenic 30.0%
! TTTCTAGTGATACCATTACA+TGG + chr1_4:68498674-68498693 Msa0180520:intron 30.0%
CTTTCAATCTTACCATGTAA+TGG - chr1_4:68498689-68498708 None:intergenic 30.0%
TTACATGGTAAGATTGAAAG+TGG + chr1_4:68498689-68498708 Msa0180520:intron 30.0%
!!! TGAAAGTGGATTTTTTCTTG+TGG + chr1_4:68498703-68498722 Msa0180520:intron 30.0%
!!! GAAAGTGGATTTTTTCTTGT+GGG + chr1_4:68498704-68498723 Msa0180520:intron 30.0%
ATAAGTTGTTTACCTAACAG+TGG - chr1_4:68498872-68498891 None:intergenic 30.0%
GAGCTCAAATAAGTCAATTT+AGG + chr1_4:68499085-68499104 Msa0180520:intron 30.0%
GTACAATCAAAATGTTCAAC+AGG - chr1_4:68499164-68499183 None:intergenic 30.0%
GCCTTGATCAAGAAATTTAT+AGG - chr1_4:68499527-68499546 None:intergenic 30.0%
!! TTGATCAAGGCTTCATTTTT+GGG + chr1_4:68499536-68499555 Msa0180520:intron 30.0%
CAGTTAATGAGGTTGTTTAT+GGG + chr1_4:68499692-68499711 Msa0180520:intron 30.0%
! TAATGTATTCCTTTCTAGCA+GGG - chr1_4:68499760-68499779 None:intergenic 30.0%
! TTAATGTATTCCTTTCTAGC+AGG - chr1_4:68499761-68499780 None:intergenic 30.0%
TGCTAGAAAGGAATACATTA+AGG + chr1_4:68499760-68499779 Msa0180520:CDS 30.0%
GCTAGAAAGGAATACATTAA+GGG + chr1_4:68499761-68499780 Msa0180520:CDS 30.0%
! ATGATCTGTAATGGAACTAT+TGG + chr1_4:68499873-68499892 Msa0180520:three_prime_UTR 30.0%
! TGTATAGATTTTACCCTAAG+AGG + chr1_4:68499904-68499923 Msa0180520:three_prime_UTR 30.0%
! TCCCATACTTTATCTGTTTT+AGG - chr1_4:68499952-68499971 None:intergenic 30.0%
! GATTTTTGTGTGTGTAGGAA+AGG + chr1_4:68498172-68498191 Msa0180520:intron 35.0%
CCAAGGAAACAAATTCATTG+GGG - chr1_4:68498400-68498419 None:intergenic 35.0%
GTCCAAGGAAACAAATTCAT+TGG - chr1_4:68498402-68498421 None:intergenic 35.0%
! TAGAATTGGGAGTCTTATAC+TGG + chr1_4:68498513-68498532 Msa0180520:intron 35.0%
AAAAACATTAGAGAAGCCAG+AGG + chr1_4:68498575-68498594 Msa0180520:CDS 35.0%
TACCATGTAATTGTATCCTC+TGG - chr1_4:68498594-68498613 None:intergenic 35.0%
TAAGTATTTGCGAGACTGTT+CGG - chr1_4:68499054-68499073 None:intergenic 35.0%
ACTTATTTGAGCTCATCTAC+CGG - chr1_4:68499079-68499098 None:intergenic 35.0%
GGATTTACTTGATTTATGCC+CGG + chr1_4:68499275-68499294 Msa0180520:intron 35.0%
TGAAGAGATTCGTTACTGTT+TGG + chr1_4:68499359-68499378 Msa0180520:CDS 35.0%
! GATCTTATCATTTTACCAGC+AGG + chr1_4:68499450-68499469 Msa0180520:CDS 35.0%
CGACACAAATAACTATGTGA+AGG + chr1_4:68499494-68499513 Msa0180520:CDS 35.0%
! CTTGATCAAGGCTTCATTTT+TGG + chr1_4:68499535-68499554 Msa0180520:intron 35.0%
CAAGATTCAAGGTGATATGT+TGG + chr1_4:68499620-68499639 Msa0180520:intron 35.0%
TTGTTCGATGCATATGTATG+TGG + chr1_4:68499662-68499681 Msa0180520:intron 35.0%
GCAGTTAATGAGGTTGTTTA+TGG + chr1_4:68499691-68499710 Msa0180520:intron 35.0%
ATATAGGTCTTCTCCTCTTA+GGG - chr1_4:68499920-68499939 None:intergenic 35.0%
TATATAGGTCTTCTCCTCTT+AGG - chr1_4:68499921-68499940 None:intergenic 35.0%
! GATTTTTGTGTGTGTAGGAA+AGG + chr1_4:68498172-68498191 Msa0180520:intron 35.0%
CCAAGGAAACAAATTCATTG+GGG - chr1_4:68498400-68498419 None:intergenic 35.0%
GTCCAAGGAAACAAATTCAT+TGG - chr1_4:68498402-68498421 None:intergenic 35.0%
! TAGAATTGGGAGTCTTATAC+TGG + chr1_4:68498513-68498532 Msa0180520:intron 35.0%
AAAAACATTAGAGAAGCCAG+AGG + chr1_4:68498575-68498594 Msa0180520:CDS 35.0%
TACCATGTAATTGTATCCTC+TGG - chr1_4:68498594-68498613 None:intergenic 35.0%
TAAGTATTTGCGAGACTGTT+CGG - chr1_4:68499054-68499073 None:intergenic 35.0%
ACTTATTTGAGCTCATCTAC+CGG - chr1_4:68499079-68499098 None:intergenic 35.0%
GGATTTACTTGATTTATGCC+CGG + chr1_4:68499275-68499294 Msa0180520:intron 35.0%
TGAAGAGATTCGTTACTGTT+TGG + chr1_4:68499359-68499378 Msa0180520:CDS 35.0%
! GATCTTATCATTTTACCAGC+AGG + chr1_4:68499450-68499469 Msa0180520:CDS 35.0%
CGACACAAATAACTATGTGA+AGG + chr1_4:68499494-68499513 Msa0180520:CDS 35.0%
! CTTGATCAAGGCTTCATTTT+TGG + chr1_4:68499535-68499554 Msa0180520:intron 35.0%
CAAGATTCAAGGTGATATGT+TGG + chr1_4:68499620-68499639 Msa0180520:intron 35.0%
TTGTTCGATGCATATGTATG+TGG + chr1_4:68499662-68499681 Msa0180520:intron 35.0%
GCAGTTAATGAGGTTGTTTA+TGG + chr1_4:68499691-68499710 Msa0180520:intron 35.0%
ATATAGGTCTTCTCCTCTTA+GGG - chr1_4:68499920-68499939 None:intergenic 35.0%
TATATAGGTCTTCTCCTCTT+AGG - chr1_4:68499921-68499940 None:intergenic 35.0%
! CAGCAGATTTTTGTGTGTGT+AGG + chr1_4:68498167-68498186 Msa0180520:intron 40.0%
! CCCCAATGAATTTGTTTCCT+TGG + chr1_4:68498397-68498416 Msa0180520:CDS 40.0%
ATAACCTGCTAATTGGTCCA+AGG - chr1_4:68498417-68498436 None:intergenic 40.0%
AGCCAGAGGATACAATTACA+TGG + chr1_4:68498589-68498608 Msa0180520:CDS 40.0%
AGTCTCGCAAATACTTATGC+CGG + chr1_4:68499057-68499076 Msa0180520:intron 40.0%
AGAGATTCGTTACTGTTTGG+AGG + chr1_4:68499362-68499381 Msa0180520:CDS 40.0%
GAGATTCGTTACTGTTTGGA+GGG + chr1_4:68499363-68499382 Msa0180520:CDS 40.0%
!!! AAGGCTTCATTTTTGGGATG+TGG + chr1_4:68499542-68499561 Msa0180520:intron 40.0%
!!! GTGGTTTTGTGCAGTTAATG+AGG + chr1_4:68499681-68499700 Msa0180520:intron 40.0%
! CAGCAGATTTTTGTGTGTGT+AGG + chr1_4:68498167-68498186 Msa0180520:intron 40.0%
! CCCCAATGAATTTGTTTCCT+TGG + chr1_4:68498397-68498416 Msa0180520:CDS 40.0%
ATAACCTGCTAATTGGTCCA+AGG - chr1_4:68498417-68498436 None:intergenic 40.0%
AGCCAGAGGATACAATTACA+TGG + chr1_4:68498589-68498608 Msa0180520:CDS 40.0%
AGTCTCGCAAATACTTATGC+CGG + chr1_4:68499057-68499076 Msa0180520:intron 40.0%
AGAGATTCGTTACTGTTTGG+AGG + chr1_4:68499362-68499381 Msa0180520:CDS 40.0%
GAGATTCGTTACTGTTTGGA+GGG + chr1_4:68499363-68499382 Msa0180520:CDS 40.0%
!!! AAGGCTTCATTTTTGGGATG+TGG + chr1_4:68499542-68499561 Msa0180520:intron 40.0%
!!! GTGGTTTTGTGCAGTTAATG+AGG + chr1_4:68499681-68499700 Msa0180520:intron 40.0%
ATTGTGACAGGCATGGTTCA+TGG + chr1_4:68498334-68498353 Msa0180520:intron 45.0%
CAAATTCATTGGGGTAGCCA+TGG - chr1_4:68498391-68498410 None:intergenic 45.0%
GTTTCCTTGGACCAATTAGC+AGG + chr1_4:68498410-68498429 Msa0180520:CDS 45.0%
CTACACTGAGCACATTCATC+AGG + chr1_4:68499335-68499354 Msa0180520:CDS 45.0%
TTCGAGACAAAAACGATCGC+TGG + chr1_4:68499403-68499422 Msa0180520:CDS 45.0%
CTGGATTCGCATTTGGATCA+AGG + chr1_4:68499422-68499441 Msa0180520:CDS 45.0%
ATTCGCATTTGGATCAAGGC+TGG + chr1_4:68499426-68499445 Msa0180520:CDS 45.0%
TACCAGCAGGAATCTACCAT+CGG + chr1_4:68499463-68499482 Msa0180520:CDS 45.0%
CGATTATATGCTGTCCACAC+CGG - chr1_4:68499722-68499741 None:intergenic 45.0%
GACAGCATATAATCGACCAC+AGG + chr1_4:68499727-68499746 Msa0180520:CDS 45.0%
GGAAGATAACCCTGCTAGAA+AGG + chr1_4:68499748-68499767 Msa0180520:CDS 45.0%
AAGGGCTTGACTGAGAAAAC+TGG + chr1_4:68499779-68499798 Msa0180520:CDS 45.0%
TGTTCCACTTGCAGCTCATT+AGG + chr1_4:68499802-68499821 Msa0180520:CDS 45.0%
ATTGTGACAGGCATGGTTCA+TGG + chr1_4:68498334-68498353 Msa0180520:intron 45.0%
CAAATTCATTGGGGTAGCCA+TGG - chr1_4:68498391-68498410 None:intergenic 45.0%
GTTTCCTTGGACCAATTAGC+AGG + chr1_4:68498410-68498429 Msa0180520:CDS 45.0%
CTACACTGAGCACATTCATC+AGG + chr1_4:68499335-68499354 Msa0180520:CDS 45.0%
TTCGAGACAAAAACGATCGC+TGG + chr1_4:68499403-68499422 Msa0180520:CDS 45.0%
CTGGATTCGCATTTGGATCA+AGG + chr1_4:68499422-68499441 Msa0180520:CDS 45.0%
ATTCGCATTTGGATCAAGGC+TGG + chr1_4:68499426-68499445 Msa0180520:CDS 45.0%
TACCAGCAGGAATCTACCAT+CGG + chr1_4:68499463-68499482 Msa0180520:CDS 45.0%
CGATTATATGCTGTCCACAC+CGG - chr1_4:68499722-68499741 None:intergenic 45.0%
GACAGCATATAATCGACCAC+AGG + chr1_4:68499727-68499746 Msa0180520:CDS 45.0%
GGAAGATAACCCTGCTAGAA+AGG + chr1_4:68499748-68499767 Msa0180520:CDS 45.0%
AAGGGCTTGACTGAGAAAAC+TGG + chr1_4:68499779-68499798 Msa0180520:CDS 45.0%
TGTTCCACTTGCAGCTCATT+AGG + chr1_4:68499802-68499821 Msa0180520:CDS 45.0%
GATCCAAGACTTCCTCACCA+TGG + chr1_4:68498371-68498390 Msa0180520:CDS 50.0%
TAGCCATGGTGAGGAAGTCT+TGG - chr1_4:68498377-68498396 None:intergenic 50.0%
TTAGCAGCAACGCCACTGTT+AGG + chr1_4:68498857-68498876 Msa0180520:intron 50.0%
CGTTACTGTTTGGAGGGAAG+TGG + chr1_4:68499369-68499388 Msa0180520:CDS 50.0%
ACGATCGCTGGATTCGCATT+TGG + chr1_4:68499415-68499434 Msa0180520:CDS 50.0%
AACCGATGGTAGATTCCTGC+TGG - chr1_4:68499468-68499487 None:intergenic 50.0%
TTGTGTCGAGAGTGAACCGA+TGG - chr1_4:68499482-68499501 None:intergenic 50.0%
GAGGTTGTTTATGGGTGAGC+CGG + chr1_4:68499700-68499719 Msa0180520:CDS 50.0%
CTAGCAGGGTTATCTTCCTG+TGG - chr1_4:68499746-68499765 None:intergenic 50.0%
GATCCAAGACTTCCTCACCA+TGG + chr1_4:68498371-68498390 Msa0180520:CDS 50.0%
TAGCCATGGTGAGGAAGTCT+TGG - chr1_4:68498377-68498396 None:intergenic 50.0%
TTAGCAGCAACGCCACTGTT+AGG + chr1_4:68498857-68498876 Msa0180520:intron 50.0%
CGTTACTGTTTGGAGGGAAG+TGG + chr1_4:68499369-68499388 Msa0180520:CDS 50.0%
ACGATCGCTGGATTCGCATT+TGG + chr1_4:68499415-68499434 Msa0180520:CDS 50.0%
AACCGATGGTAGATTCCTGC+TGG - chr1_4:68499468-68499487 None:intergenic 50.0%
TTGTGTCGAGAGTGAACCGA+TGG - chr1_4:68499482-68499501 None:intergenic 50.0%
GAGGTTGTTTATGGGTGAGC+CGG + chr1_4:68499700-68499719 Msa0180520:CDS 50.0%
CTAGCAGGGTTATCTTCCTG+TGG - chr1_4:68499746-68499765 None:intergenic 50.0%
TCATTGGGGTAGCCATGGTG+AGG - chr1_4:68498386-68498405 None:intergenic 55.0%
TGTTTATGGGTGAGCCGGTG+TGG + chr1_4:68499705-68499724 Msa0180520:CDS 55.0%
GGGTCCTAATGAGCTGCAAG+TGG - chr1_4:68499809-68499828 None:intergenic 55.0%
TCATTGGGGTAGCCATGGTG+AGG - chr1_4:68498386-68498405 None:intergenic 55.0%
TGTTTATGGGTGAGCCGGTG+TGG + chr1_4:68499705-68499724 Msa0180520:CDS 55.0%
GGGTCCTAATGAGCTGCAAG+TGG - chr1_4:68499809-68499828 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68498112 68500120 68498112 ID=Msa0180520;Name=Msa0180520
chr1_4 mRNA 68498112 68500120 68498112 ID=Msa0180520-mRNA-1;Parent=Msa0180520;Name=Msa0180520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=111|1|1|1|0.5|0.42|7|246|187
chr1_4 exon 68498112 68498184 68498112 ID=Msa0180520-mRNA-1:exon:22625;Parent=Msa0180520-mRNA-1
chr1_4 exon 68498217 68498266 68498217 ID=Msa0180520-mRNA-1:exon:22626;Parent=Msa0180520-mRNA-1
chr1_4 exon 68498344 68498431 68498344 ID=Msa0180520-mRNA-1:exon:22627;Parent=Msa0180520-mRNA-1
chr1_4 exon 68498516 68498610 68498516 ID=Msa0180520-mRNA-1:exon:22628;Parent=Msa0180520-mRNA-1
chr1_4 exon 68499276 68499515 68499276 ID=Msa0180520-mRNA-1:exon:22629;Parent=Msa0180520-mRNA-1
chr1_4 exon 68499695 68499963 68499695 ID=Msa0180520-mRNA-1:exon:22630;Parent=Msa0180520-mRNA-1
chr1_4 exon 68500015 68500120 68500015 ID=Msa0180520-mRNA-1:exon:22631;Parent=Msa0180520-mRNA-1
chr1_4 five_prime_UTR 68498112 68498184 68498112 ID=Msa0180520-mRNA-1:five_prime_utr;Parent=Msa0180520-mRNA-1
chr1_4 five_prime_UTR 68498217 68498254 68498217 ID=Msa0180520-mRNA-1:five_prime_utr;Parent=Msa0180520-mRNA-1
chr1_4 CDS 68498255 68498266 68498255 ID=Msa0180520-mRNA-1:cds;Parent=Msa0180520-mRNA-1
chr1_4 CDS 68498344 68498431 68498344 ID=Msa0180520-mRNA-1:cds;Parent=Msa0180520-mRNA-1
chr1_4 CDS 68498516 68498610 68498516 ID=Msa0180520-mRNA-1:cds;Parent=Msa0180520-mRNA-1
chr1_4 CDS 68499276 68499515 68499276 ID=Msa0180520-mRNA-1:cds;Parent=Msa0180520-mRNA-1
chr1_4 CDS 68499695 68499823 68499695 ID=Msa0180520-mRNA-1:cds;Parent=Msa0180520-mRNA-1
chr1_4 three_prime_UTR 68499824 68499963 68499824 ID=Msa0180520-mRNA-1:three_prime_utr;Parent=Msa0180520-mRNA-1
chr1_4 three_prime_UTR 68500015 68500120 68500015 ID=Msa0180520-mRNA-1:three_prime_utr;Parent=Msa0180520-mRNA-1
Gene Sequence

>Msa0180520

ATGGCGATTGAAGCATGGTTCATGGACAATAGCAATGAAGATCCAAGACTTCCTCACCATGGCTACCCCAATGAATTTGTTTCCTTGGACCAATTAGCAGAATTGGGAGTCTTATACTGGAAGCTGAACCCTAATGACTATGAGAATGATCAAGAATTGAAAAACATTAGAGAAGCCAGAGGATACAATTACATGGATTTACTTGATTTATGCCCGGAAAAAGTTGAAAATTATGAAGAGAAGTTGAAGAACTTCTACACTGAGCACATTCATCAGGATGAAGAGATTCGTTACTGTTTGGAGGGAAGTGGCTACTTCGATGTTCGAGACAAAAACGATCGCTGGATTCGCATTTGGATCAAGGCTGGTGATCTTATCATTTTACCAGCAGGAATCTACCATCGGTTCACTCTCGACACAAATAACTATGTGAAGTTAATGAGGTTGTTTATGGGTGAGCCGGTGTGGACAGCATATAATCGACCACAGGAAGATAACCCTGCTAGAAAGGAATACATTAAGGGCTTGACTGAGAAAACTGGTGTTCCACTTGCAGCTCATTAG

Protein sequence

>Msa0180520

MAIEAWFMDNSNEDPRLPHHGYPNEFVSLDQLAELGVLYWKLNPNDYENDQELKNIREARGYNYMDLLDLCPEKVENYEEKLKNFYTEHIHQDEEIRYCLEGSGYFDVRDKNDRWIRIWIKAGDLIILPAGIYHRFTLDTNNYVKLMRLFMGEPVWTAYNRPQEDNPARKEYIKGLTEKTGVPLAAH*