AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515360 MtrunA17_Chr3g0124631 94.126 698 37 1 1 694 1 698 0.0 1340
Msa0515360 MtrunA17_Chr1g0160041 76.259 695 163 2 1 693 1 695 0.0 1116
Msa0515360 MtrunA17_Chr3g0120731 61.295 695 265 2 3 693 33 727 0.0 899
Msa0515360 MtrunA17_Chr1g0205711 35.194 645 374 11 56 694 80 686 3.14e-119 372
Msa0515360 MtrunA17_Chr5g0396691 32.099 648 395 14 55 692 42 654 1.02e-102 328
Msa0515360 MtrunA17_Chr5g0396711 31.944 648 396 14 55 692 42 654 3.62e-100 321
Msa0515360 MtrunA17_Chr1g0194371 31.649 673 402 14 37 692 22 653 1.13e-97 315
Msa0515360 MtrunA17_Chr4g0034181 30.903 631 383 16 78 692 58 651 6.07e-93 302
Msa0515360 MtrunA17_Chr8g0388081 31.509 603 380 11 101 692 13 593 5.13e-92 298
Msa0515360 MtrunA17_Chr1g0162621 30.015 683 420 16 27 692 12 653 6.34e-91 297
Msa0515360 MtrunA17_Chr7g0270221 31.832 644 347 16 56 685 41 606 1.68e-90 295
Msa0515360 MtrunA17_Chr3g0121951 25.193 647 387 21 106 692 105 714 3.28e-38 151
Msa0515360 MtrunA17_Chr3g0121931 24.493 641 402 16 106 692 107 719 4.09e-38 151
Msa0515360 MtrunA17_Chr8g0377991 25.078 642 399 18 106 692 109 723 7.29e-35 141
Msa0515360 MtrunA17_Chr4g0039791 29.825 342 166 14 248 579 204 481 4.54e-25 110
Msa0515360 MtrunA17_Chr5g0409791 27.160 486 258 20 115 579 78 488 1.60e-24 108
Msa0515360 MtrunA17_Chr1g0157401 27.988 343 173 15 248 581 205 482 1.53e-20 95.9
Msa0515360 MtrunA17_Chr5g0409771 24.089 494 279 18 106 584 68 480 2.27e-19 92.4
Msa0515360 MtrunA17_Chr6g0471921 24.008 479 280 15 106 577 32 433 5.80e-17 84.7
Msa0515360 MtrunA17_Chr1g0197391 26.087 345 178 14 247 581 211 488 3.02e-16 82.4
Msa0515360 MtrunA17_Chr3g0109731 27.224 371 174 14 254 608 194 484 1.91e-15 80.1
Msa0515360 MtrunA17_Chr5g0433231 29.804 255 133 9 441 682 322 543 1.10e-14 77.4
Msa0515360 MtrunA17_Chr5g0433241 49.398 83 36 3 500 582 391 467 1.93e-13 73.6
Msa0515360 MtrunA17_Chr2g0327341 28.512 242 131 11 419 649 304 514 9.79e-13 71.2
Msa0515360 MtrunA17_Chr5g0396311 27.089 347 175 14 248 581 182 463 1.22e-12 70.9
Msa0515360 MtrunA17_Chr1g0180541 28.191 188 113 8 407 583 296 472 1.41e-12 70.9
Msa0515360 MtrunA17_Chr2g0334131 27.126 247 150 10 419 646 45 280 2.24e-12 68.2
Msa0515360 MtrunA17_Chr5g0433221 29.897 194 106 6 489 682 380 543 4.73e-12 69.3
Msa0515360 MtrunA17_Chr6g0471311 29.947 187 101 6 500 686 393 549 5.93e-12 68.9
Msa0515360 MtrunA17_Chr4g0028411 28.910 211 117 8 445 649 334 517 6.28e-12 68.6
Msa0515360 MtrunA17_Chr1g0180551 30.488 164 101 6 425 583 390 545 1.66e-11 67.4
Msa0515360 MtrunA17_Chr5g0395431 32.353 170 99 8 419 581 349 509 2.36e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515360 AT1G77590.1 72.911 694 184 2 1 693 1 691 0.0 1090
Msa0515360 AT2G04350.2 64.190 673 238 1 24 693 48 720 0.0 911
Msa0515360 AT2G04350.1 64.190 673 238 1 24 693 48 720 0.0 911
Msa0515360 AT1G77590.2 75.503 547 131 1 147 693 2 545 0.0 887
Msa0515360 AT5G27600.1 36.153 603 351 12 100 694 113 689 3.74e-121 377
Msa0515360 AT3G05970.1 35.257 641 375 10 56 692 83 687 1.03e-116 366
Msa0515360 AT4G23850.1 32.722 654 385 17 54 692 42 655 8.22e-102 326
Msa0515360 AT1G64400.1 32.353 646 388 14 61 694 49 657 1.86e-100 322
Msa0515360 AT2G47240.1 31.490 651 397 12 56 694 41 654 1.44e-95 309
Msa0515360 AT2G47240.2 31.490 651 397 12 56 694 41 654 1.44e-95 309
Msa0515360 AT2G47240.3 31.490 651 397 12 56 694 41 654 1.44e-95 309
Msa0515360 AT4G11030.1 31.279 649 401 14 54 692 42 655 6.38e-95 308
Msa0515360 AT2G47240.4 32.248 614 381 11 93 694 5 595 3.73e-94 304
Msa0515360 AT1G49430.1 31.466 607 383 10 100 694 74 659 4.20e-92 300
Msa0515360 AT1G49430.2 32.080 452 274 10 100 539 74 504 3.29e-60 211
Msa0515360 AT3G23790.1 25.816 643 387 23 107 692 112 721 1.81e-39 155
Msa0515360 AT4G14070.1 24.181 641 393 18 106 693 127 727 2.77e-37 149
Msa0515360 AT4G19010.1 29.532 342 171 14 248 581 205 484 3.57e-25 110
Msa0515360 AT1G20500.1 27.679 336 176 11 248 579 198 470 1.05e-22 103
Msa0515360 AT1G20510.2 28.198 344 174 12 248 583 190 468 7.71e-21 96.7
Msa0515360 AT1G20510.1 28.529 340 170 12 248 579 190 464 1.15e-20 96.7
Msa0515360 AT1G20510.3 27.950 322 160 11 248 561 190 447 8.71e-19 90.5
Msa0515360 AT1G21540.1 28.324 346 165 13 251 581 191 468 6.86e-17 85.1
Msa0515360 AT5G16340.1 32.547 212 113 7 478 689 369 550 7.24e-16 81.6
Msa0515360 AT5G38120.3 26.254 339 175 15 248 579 200 470 1.13e-15 80.9
Msa0515360 AT5G38120.4 26.254 339 175 15 248 579 200 470 1.30e-15 80.5
Msa0515360 AT5G38120.2 26.254 339 175 15 248 579 200 470 1.30e-15 80.5
Msa0515360 AT5G38120.1 26.254 339 175 15 248 579 200 470 1.54e-15 80.5
Msa0515360 AT5G16370.1 27.039 466 219 19 248 691 186 552 2.33e-15 80.1
Msa0515360 AT1G75960.1 31.443 194 105 6 480 673 371 536 2.57e-14 76.6
Msa0515360 AT4G05160.1 28.033 239 136 9 419 649 309 519 5.02e-14 75.9
Msa0515360 AT1G77240.1 48.780 82 37 2 500 581 390 466 4.65e-13 72.8
Msa0515360 AT1G20480.1 33.537 164 92 7 422 579 333 485 5.28e-13 72.8
Msa0515360 AT1G21530.2 31.250 192 108 7 404 581 284 465 6.70e-13 72.4
Msa0515360 AT3G48990.1 31.361 169 98 5 418 581 281 436 6.87e-13 72.0
Msa0515360 AT1G21530.1 34.839 155 79 6 441 581 317 463 2.42e-12 70.5
Msa0515360 AT1G62940.1 25.348 359 177 15 245 584 179 465 4.67e-12 69.7
Msa0515360 AT1G65880.1 30.233 258 134 11 422 660 305 535 1.82e-11 67.8
Msa0515360 AT3G21240.1 26.953 256 138 13 419 646 316 550 3.88e-11 66.6

Find 195 sgRNAs with CRISPR-Local

Find 671 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGTGGTGCACCCCTTTC+TGG 0.130378 3_4:+66590539 Msa0515360:CDS
AATTGATAAACATGGTAAAA+AGG 0.232096 3_4:-66597267 None:intergenic
ATGTGGGATGGTTCTTAAAT+TGG 0.239460 3_4:-66587235 None:intergenic
TGGTAGCTGGTTTGGTGCTT+GGG 0.253560 3_4:+66590436 Msa0515360:CDS
TTCTCCCAACGAAGCATAAA+TGG 0.267608 3_4:-66588067 None:intergenic
TTAACATATGTGGAAGGTTT+TGG 0.268361 3_4:-66592276 None:intergenic
TTTGAAAACACAACATTAGA+TGG 0.286308 3_4:+66587257 Msa0515360:five_prime_UTR
CCGCAAACGCCGCGGCTTAC+CGG 0.287825 3_4:+66587546 Msa0515360:CDS
AGAATGGTTTATTGCATTGC+AGG 0.308254 3_4:+66587903 Msa0515360:CDS
GCCGCGGCGTTTGCGGTTGT+TGG 0.320837 3_4:-66587539 None:intergenic
CTCATCCTGCATTGGATGAA+TGG 0.328825 3_4:+66596195 Msa0515360:CDS
ACTCAAGTTATTTAACAGTT+TGG 0.330171 3_4:-66597223 None:intergenic
GATGTATCGGTTAGAGTTAA+TGG 0.330847 3_4:-66590144 None:intergenic
CAGGTTGAGGCAGTTCTTCT+TGG 0.331599 3_4:+66596098 Msa0515360:intron
ATGAGTAACCATTCCGAGTT+TGG 0.332983 3_4:-66597111 None:intergenic
CTGGTTTGGTGCTTGGGGAT+TGG 0.338123 3_4:+66590442 Msa0515360:CDS
CGAAGGATGCAAGCGATTAA+TGG 0.338298 3_4:+66590416 Msa0515360:CDS
TGAGATCATTGATAGGAAAA+AGG 0.339564 3_4:+66595965 Msa0515360:CDS
TGCTGTAAAGGTTGATGAAC+GGG 0.340717 3_4:+66595887 Msa0515360:intron
ACATCCTTTGTCCCAAGTTC+AGG 0.343319 3_4:-66589923 None:intergenic
ATGGTAGCTGGTTTGGTGCT+TGG 0.343553 3_4:+66590435 Msa0515360:CDS
AAATCACTTGTAAATATTGC+TGG 0.347751 3_4:+66589452 Msa0515360:CDS
TCTTCTTGGCAGCCCCTTTG+TGG 0.359980 3_4:+66596112 Msa0515360:CDS
AATAACAAGAGAAAAGGTTT+TGG 0.360047 3_4:-66587340 None:intergenic
GCTTCTGGTTTGGCGAAGAT+TGG 0.360072 3_4:+66587835 Msa0515360:CDS
AGACCATATGCTTGACCTAT+TGG 0.362678 3_4:-66592186 None:intergenic
TGAATTGATCTCACGTGAAA+TGG 0.368695 3_4:+66587717 Msa0515360:CDS
GCGATTAATGGTAGCTGGTT+TGG 0.369688 3_4:+66590428 Msa0515360:CDS
TCATCCTGCATTGGATGAAT+GGG 0.370904 3_4:+66596196 Msa0515360:CDS
ATTAATGTTCATAATTCAAT+TGG 0.381560 3_4:-66587297 None:intergenic
GGCTGTTTCTCATCCTGCAT+TGG 0.384325 3_4:+66596187 Msa0515360:CDS
GCTGCTGTTGGAGGCTGTAT+AGG 0.394725 3_4:+66590111 Msa0515360:CDS
TGTTTGTTCAGGCTTGCTTC+CGG 0.400584 3_4:+66588025 Msa0515360:intron
AGATTCATCAACATTTGTCT+TGG 0.406370 3_4:+66590572 Msa0515360:CDS
ACAATGAACGCCTACATTGC+CGG 0.408215 3_4:+66587478 Msa0515360:exon
CCGGTAAGCCGCGGCGTTTG+CGG 0.410043 3_4:-66587546 None:intergenic
GTGAAAATTGTTCCTGAACT+TGG 0.412273 3_4:+66589911 Msa0515360:CDS
GATTCATCAACATTTGTCTT+GGG 0.413381 3_4:+66590573 Msa0515360:CDS
AACTGCAACATCAGCTGAAA+GGG 0.414993 3_4:-66589618 None:intergenic
CCTCGTGGTGAAATAGTAAT+TGG 0.418609 3_4:+66593470 Msa0515360:CDS
GTAGTTGAATATCCACCTTC+AGG 0.419524 3_4:-66593434 None:intergenic
GGAAGCAAAGAAGGCTCGTC+TGG 0.420989 3_4:+66596936 Msa0515360:intron
GTTGAAAACAAAGTAGTAAT+GGG 0.422478 3_4:-66587430 None:intergenic
TAGAATTTGTTTGCTGCTGT+TGG 0.423659 3_4:+66590099 Msa0515360:intron
AAAGAAGTAGCTCCTTTCAC+TGG 0.428483 3_4:-66597135 None:intergenic
AACATAATGTTGTCCACAAA+GGG 0.431416 3_4:-66596125 None:intergenic
TTCATCTTGGAGAGTATCAA+TGG 0.436487 3_4:+66587773 Msa0515360:CDS
GCCGACGTCGGCGGCGAACC+TGG 0.444746 3_4:+66587568 Msa0515360:CDS
AAAACCTTCCACATATGTTA+AGG 0.446570 3_4:+66592278 Msa0515360:CDS
GTGGTCCAAGTGTCACTCTT+GGG 0.449191 3_4:+66593492 Msa0515360:CDS
GACCCATGGACTCCTGAGAC+TGG 0.453555 3_4:+66596997 Msa0515360:CDS
AATTTGTTTGCTGCTGTTGG+AGG 0.455909 3_4:+66590102 Msa0515360:CDS
GTTACCATTTATGCTTCGTT+GGG 0.457080 3_4:+66588063 Msa0515360:CDS
TTTCGGTCGTAATTTATCTC+AGG 0.457430 3_4:+66597290 Msa0515360:three_prime_UTR
TGTTACCATTTATGCTTCGT+TGG 0.470259 3_4:+66588062 Msa0515360:CDS
TCTTTGTGAGTCACCAGAAA+GGG 0.471719 3_4:-66590552 None:intergenic
TTTGTGTCATTCATTGAATG+AGG 0.476608 3_4:+66588095 Msa0515360:CDS
CCGCATCTGCTCAGCATGGA+TGG 0.477689 3_4:+66589531 Msa0515360:CDS
GCAGTAACTAGGCCAGTCTC+AGG 0.478808 3_4:-66597009 None:intergenic
GATGAAGAAAGGTTTATGAA+TGG 0.479275 3_4:-66587404 None:intergenic
GTTGCCTTGAGATCATTGAT+AGG 0.484550 3_4:+66595958 Msa0515360:CDS
TTAAATTGCTTTCTGACCCA+TGG 0.484569 3_4:+66596983 Msa0515360:CDS
GGTTCGCCGCCGACGTCGGC+CGG 0.487708 3_4:-66587565 None:intergenic
TGGTTGCGGACCGCGAAACC+AGG 0.488283 3_4:-66587586 None:intergenic
AAGTTCGAGAAGCTTCATCT+TGG 0.494487 3_4:+66587760 Msa0515360:CDS
TCTTAAGAGCTGCAGTAACT+AGG 0.495063 3_4:-66597020 None:intergenic
AGGCCAGTCTCAGGAGTCCA+TGG 0.497067 3_4:-66597000 None:intergenic
GGTAGCTGGTTTGGTGCTTG+GGG 0.497596 3_4:+66590437 Msa0515360:CDS
CCTTCCCAGAGTGAAGTTAA+CGG 0.498435 3_4:-66587622 None:intergenic
TGAAAGCAATGTAGAAAGAG+TGG 0.500301 3_4:-66587369 None:intergenic
CGAACACGATCAAGAATTGC+TGG 0.500340 3_4:-66590234 None:intergenic
AGTTGAAAACAAAGTAGTAA+TGG 0.500380 3_4:-66587431 None:intergenic
GAGTATCAATGGGTTACGTA+TGG 0.500959 3_4:+66587784 Msa0515360:CDS
TGCAAGCGATTAATGGTAGC+TGG 0.501413 3_4:+66590423 Msa0515360:CDS
GGTTGTTGGAGTTGCGGAAG+AGG 0.502140 3_4:-66587525 None:intergenic
AAGCCTTTCAACATCAGAAA+AGG 0.502433 3_4:-66589564 None:intergenic
TGAAAATTGTTCCTGAACTT+GGG 0.504500 3_4:+66589912 Msa0515360:CDS
CGCGGCTTACCGGCCGACGT+CGG 0.506121 3_4:+66587556 Msa0515360:CDS
GAAATGGAAACTTCTTCTGA+TGG 0.507585 3_4:+66587733 Msa0515360:CDS
GGTGGTCCAAGTGTCACTCT+TGG 0.507960 3_4:+66593491 Msa0515360:CDS
AAGTTACTGTGTGGCACTTG+TGG 0.512481 3_4:+66596166 Msa0515360:CDS
AATAACTACCTTAACATATG+TGG 0.514991 3_4:-66592286 None:intergenic
GTAATGGGAGTGATGAAGAA+AGG 0.515010 3_4:-66587415 None:intergenic
GGCTTACCGGCCGACGTCGG+CGG 0.515433 3_4:+66587559 Msa0515360:CDS
CATCTCCGTTAACTTCACTC+TGG 0.517195 3_4:+66587617 Msa0515360:CDS
GAGATGTGACGCGGTGGTTG+CGG 0.517808 3_4:-66587600 None:intergenic
TACGACCACCCAGAATTGCT+TGG 0.517811 3_4:-66590502 None:intergenic
AGGTTGATGAACGGGGAATG+AGG 0.520598 3_4:+66595895 Msa0515360:intron
TGAGCAGATGCGGCATCAGA+TGG 0.520910 3_4:-66589521 None:intergenic
AAAACACAACATTAGATGGA+TGG 0.524033 3_4:+66587261 Msa0515360:five_prime_UTR
CGGCGGCGAACCTGGTTTCG+CGG 0.524349 3_4:+66587576 Msa0515360:CDS
TGTTCCTGAACTTGGGACAA+AGG 0.527275 3_4:+66589919 Msa0515360:CDS
AATTCAAGAATATGAGCCAT+TGG 0.527773 3_4:-66589962 None:intergenic
GCATGGAGAATATGTGTCCC+TGG 0.530319 3_4:+66596004 Msa0515360:CDS
GCTCCAATAGGTCAAGCATA+TGG 0.531681 3_4:+66592183 Msa0515360:CDS
AACGATGAGGCCGGCAATGT+AGG 0.531894 3_4:-66587488 None:intergenic
AGGGGTAAATCAGCCTCGAT+AGG 0.532424 3_4:-66589599 None:intergenic
CGTGCATGCATACCTTTCCC+AGG 0.533958 3_4:-66596022 None:intergenic
CGCTTGCATCCTTCGTGCAT+AGG 0.534962 3_4:-66590408 None:intergenic
GTCATACAGGTAAATGCAAA+GGG 0.535324 3_4:+66590356 Msa0515360:intron
CGACGTCGGCCGGTAAGCCG+CGG 0.536999 3_4:-66587555 None:intergenic
ATATTTGCAGGAAGCAAAGA+AGG 0.537806 3_4:+66596927 Msa0515360:intron
CAAAGAAGAAACAGTGGAGG+AGG 0.538287 3_4:+66596265 Msa0515360:CDS
ATCTTTGTGAGTCACCAGAA+AGG 0.538336 3_4:-66590553 None:intergenic
ATGCTGACACTAGAGAAGAA+TGG 0.546458 3_4:+66587887 Msa0515360:CDS
GTTTGGTAATCTACTCAACT+AGG 0.546922 3_4:-66597206 None:intergenic
TAACTGCAACATCAGCTGAA+AGG 0.546955 3_4:-66589619 None:intergenic
ATTCTTGATCGTGTTCGTGA+TGG 0.547019 3_4:+66590240 Msa0515360:CDS
ATGTACACAAGTGGAAGTAC+AGG 0.547355 3_4:+66589644 Msa0515360:CDS
CAAGTGATTTCAATTCTTTG+CGG 0.548594 3_4:-66589439 None:intergenic
GAAGCCCATTCATCCAATGC+AGG 0.549662 3_4:-66596200 None:intergenic
ACCAGGTTCGCCGCCGACGT+CGG 0.550810 3_4:-66587569 None:intergenic
CAGTTAATCGACTGGCCTGA+AGG 0.550964 3_4:+66593419 Msa0515360:intron
GGTGCATGCATCACTTGTAA+AGG 0.552621 3_4:+66596286 Msa0515360:CDS
AGTATCAATGGGTTACGTAT+GGG 0.553654 3_4:+66587785 Msa0515360:CDS
CCATCCATGCTGAGCAGATG+CGG 0.554020 3_4:-66589531 None:intergenic
TCATCTTGGAGAGTATCAAT+GGG 0.554276 3_4:+66587774 Msa0515360:CDS
CAACATAATGTTGTCCACAA+AGG 0.555949 3_4:-66596126 None:intergenic
GATGAATGGGCTTCAAAGCA+AGG 0.558170 3_4:+66596209 Msa0515360:CDS
GGCGGAAATAACAAGAGAAA+AGG 0.559134 3_4:-66587346 None:intergenic
CTCACGGAGACTTGTGCTGG+TGG 0.563040 3_4:+66592207 Msa0515360:CDS
GTTGGAGGCTGTATAGGATA+CGG 0.563483 3_4:+66590117 Msa0515360:CDS
CAAATAGACAAAACCAAACT+CGG 0.567418 3_4:+66597098 Msa0515360:exon
TTGCTGTAAAGGTTGATGAA+CGG 0.570020 3_4:+66595886 Msa0515360:intron
GAAAGCAATGTAGAAAGAGT+GGG 0.570023 3_4:-66587368 None:intergenic
ACTATTTCACCACGAGGCAT+CGG 0.570238 3_4:-66593464 None:intergenic
GACGAGAGGAACGATGAGGC+CGG 0.570309 3_4:-66587497 None:intergenic
ATCTCCGTTAACTTCACTCT+GGG 0.571471 3_4:+66587618 Msa0515360:CDS
GATACTTCTGTTGGCCGTGT+AGG 0.572271 3_4:+66592249 Msa0515360:CDS
GTAGGTAGATTTCATGCGGA+TGG 0.573162 3_4:+66595936 Msa0515360:CDS
AGACAAAACCAAACTCGGAA+TGG 0.579060 3_4:+66597103 Msa0515360:exon
TGGTTACTCATCCCAGTGAA+AGG 0.579672 3_4:+66597123 Msa0515360:three_prime_UTR
AGAATATGTGTCCCTGGGAA+AGG 0.579752 3_4:+66596010 Msa0515360:CDS
AAGAAGTAGCTCCTTTCACT+GGG 0.580914 3_4:-66597134 None:intergenic
CGTGGTGAAATAGTAATTGG+TGG 0.584455 3_4:+66593473 Msa0515360:CDS
GGTCTCACGGAGACTTGTGC+TGG 0.586067 3_4:+66592204 Msa0515360:CDS
GGGGTAAATCAGCCTCGATA+GGG 0.587669 3_4:-66589598 None:intergenic
GGTCATACAGGTAAATGCAA+AGG 0.587700 3_4:+66590355 Msa0515360:intron
GTTTGCGGTTGTTGGAGTTG+CGG 0.591559 3_4:-66587531 None:intergenic
TGGAAGTACAGGCTTGCCTA+AGG 0.592424 3_4:+66589655 Msa0515360:CDS
TGTTGGAGTTGCGGAAGAGG+AGG 0.592784 3_4:-66587522 None:intergenic
TAACAACAGTCACATTTCTC+CGG 0.594139 3_4:-66588044 None:intergenic
CATGGAGAATATGTGTCCCT+GGG 0.602792 3_4:+66596005 Msa0515360:CDS
GAGCAGATGCGGCATCAGAT+GGG 0.603021 3_4:-66589520 None:intergenic
GACATAGTTAAACTGCAGCA+TGG 0.605290 3_4:+66595987 Msa0515360:CDS
TTAATCGACTGGCCTGAAGG+TGG 0.607384 3_4:+66593422 Msa0515360:CDS
GAGGTTACAACTGTGATTTG+TGG 0.608937 3_4:+66589416 Msa0515360:CDS
CCGTTAACTTCACTCTGGGA+AGG 0.609584 3_4:+66587622 Msa0515360:CDS
GCAGTTATAATGTACACAAG+TGG 0.611172 3_4:+66589635 Msa0515360:CDS
AAATACCCAAGAGTGACACT+TGG 0.612420 3_4:-66593497 None:intergenic
AGGTCAAGCATATGGTCTCA+CGG 0.613030 3_4:+66592191 Msa0515360:CDS
TGCATTGATGCCAACTGTGT+TGG 0.613469 3_4:+66590203 Msa0515360:CDS
GGCCAGTCTCAGGAGTCCAT+GGG 0.614285 3_4:-66596999 None:intergenic
TTTGGTAATCTACTCAACTA+GGG 0.614607 3_4:-66597205 None:intergenic
TGCAAAGGGAGGATTATCAA+AGG 0.615510 3_4:+66590370 Msa0515360:CDS
TCAATGGGTTACGTATGGGA+AGG 0.616385 3_4:+66587789 Msa0515360:CDS
GGAATGAGGTGGTTCTACAC+TGG 0.617625 3_4:+66595909 Msa0515360:CDS
ACTACCTTAACATATGTGGA+AGG 0.619062 3_4:-66592282 None:intergenic
GGTACAGCTACCAACACAGT+TGG 0.622382 3_4:-66590213 None:intergenic
TCACGGAGACTTGTGCTGGT+GGG 0.623476 3_4:+66592208 Msa0515360:CDS
CACAGTTGGCATCAATGCAG+TGG 0.624128 3_4:-66590199 None:intergenic
ATATCTAGCATACTTACCAA+TGG 0.624262 3_4:+66589946 Msa0515360:CDS
GATGCCGCATCTGCTCAGCA+TGG 0.624263 3_4:+66589527 Msa0515360:CDS
TATTCTTGAATTAATAGCTG+AGG 0.625070 3_4:+66589973 Msa0515360:CDS
AAAGACAAGAGAGTCTTACA+AGG 0.625891 3_4:+66593532 Msa0515360:CDS
GCTGTAAAGGTTGATGAACG+GGG 0.640469 3_4:+66595888 Msa0515360:intron
TCCAACAACCGCAAACGCCG+CGG 0.640799 3_4:+66587538 Msa0515360:CDS
CTTTGTGAGTCACCAGAAAG+GGG 0.655656 3_4:-66590551 None:intergenic
AATCATGATAGATTGTTACT+CGG 0.656134 3_4:+66587688 Msa0515360:CDS
TCTAACCGATACATCAAACA+AGG 0.656429 3_4:+66590152 Msa0515360:CDS
TTGATTTAGCCTATGCACGA+AGG 0.657974 3_4:+66590399 Msa0515360:CDS
GGTAATCTACTCAACTAGGG+TGG 0.659698 3_4:-66597202 None:intergenic
ACTGCAACATCAGCTGAAAG+GGG 0.666737 3_4:-66589617 None:intergenic
GTGCATGCATACCTTTCCCA+GGG 0.668654 3_4:-66596021 None:intergenic
TGGTAGAGAAAACCCTATCG+AGG 0.672136 3_4:+66589586 Msa0515360:CDS
GGAAGGCGTGACGACACTCG+CGG 0.672398 3_4:+66587639 Msa0515360:CDS
CGGAAGAGGAGGATGACGAG+AGG 0.672962 3_4:-66587511 None:intergenic
CAGCAAAGAAGAAACAGTGG+AGG 0.673881 3_4:+66596262 Msa0515360:CDS
GTGCAGCAAAGAAGAAACAG+TGG 0.676047 3_4:+66596259 Msa0515360:CDS
TGGTTCTACACTGGTGACGT+AGG 0.683274 3_4:+66595918 Msa0515360:CDS
CCAATTACTATTTCACCACG+AGG 0.684364 3_4:-66593470 None:intergenic
TGACGTAGGTAGATTTCATG+CGG 0.690923 3_4:+66595932 Msa0515360:CDS
GGACAACATTATGTTGCATG+CGG 0.691477 3_4:+66596133 Msa0515360:CDS
AAAATACATAACCGTCCCAG+AGG 0.700873 3_4:-66597166 None:intergenic
CAGGGTGTGATGATGACACA+TGG 0.701230 3_4:+66589860 Msa0515360:intron
ACTGACTCACCGATGCCTCG+TGG 0.702074 3_4:+66593455 Msa0515360:CDS
AAAGCAATGTAGAAAGAGTG+GGG 0.704149 3_4:-66587367 None:intergenic
ATACAGGTAAATGCAAAGGG+AGG 0.708230 3_4:+66590359 Msa0515360:intron
ACATAATGTTGTCCACAAAG+GGG 0.710014 3_4:-66596124 None:intergenic
TTGATGAACGGGGAATGAGG+TGG 0.714142 3_4:+66595898 Msa0515360:CDS
GGATGACGAGAGGAACGATG+AGG 0.715004 3_4:-66587501 None:intergenic
TTAACGGAGATGTGACGCGG+TGG 0.729075 3_4:-66587606 None:intergenic
AAGTTAACGGAGATGTGACG+CGG 0.733202 3_4:-66587609 None:intergenic
AAGGTCCAAGCAATTCTGGG+TGG 0.739493 3_4:+66590497 Msa0515360:CDS
GCAATGTAGAAAGAGTGGGG+CGG 0.808588 3_4:-66587364 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAATAAATAAATTT+AGG - chr3_4:66592621-66592640 None:intergenic 0.0%
!!! AATCTTTGTTATAAAAATTT+TGG + chr3_4:66588600-66588619 Msa0515360:intron 10.0%
!!! CATTTTGAAAATAATTTTTA+TGG + chr3_4:66588813-66588832 Msa0515360:intron 10.0%
!! TTATAAAAATAAAAAGAGAA+AGG - chr3_4:66589023-66589042 None:intergenic 10.0%
!!! TCCTTTTTAATAATAAAATA+AGG + chr3_4:66590609-66590628 Msa0515360:intron 10.0%
!! ATGAATAAGTAAAAAAATAA+AGG - chr3_4:66590654-66590673 None:intergenic 10.0%
!! AGAAAAAAATAATAATATGT+GGG - chr3_4:66592125-66592144 None:intergenic 10.0%
!! AAGAAAAAAATAATAATATG+TGG - chr3_4:66592126-66592145 None:intergenic 10.0%
!! TATTAGGAAAAAAAAATATT+AGG - chr3_4:66593157-66593176 None:intergenic 10.0%
!! TAATAACAAATAACAATAAA+TGG - chr3_4:66593997-66594016 None:intergenic 10.0%
!!! TCATTTTATTTATTCTATTT+TGG + chr3_4:66594019-66594038 Msa0515360:intron 10.0%
!!! CATTTTATTTATTCTATTTT+GGG + chr3_4:66594020-66594039 Msa0515360:intron 10.0%
!!! TCATAATTATGTTTTTTTTT+TGG + chr3_4:66594315-66594334 Msa0515360:intron 10.0%
!!! CATAATTATGTTTTTTTTTT+GGG + chr3_4:66594316-66594335 Msa0515360:intron 10.0%
!! ATTAATGTTCATAATTCAAT+TGG - chr3_4:66587300-66587319 None:intergenic 15.0%
!!! ATATAATTAGGATACTTTTA+GGG - chr3_4:66588238-66588257 None:intergenic 15.0%
!!! TATATAATTAGGATACTTTT+AGG - chr3_4:66588239-66588258 None:intergenic 15.0%
!!! TGTATAAAAAAGTATTTTAC+TGG + chr3_4:66588264-66588283 Msa0515360:intron 15.0%
!! TTTAAATTCAAGATATGATA+TGG - chr3_4:66588639-66588658 None:intergenic 15.0%
!!! GCCTTATTTTATTATTAAAA+AGG - chr3_4:66590613-66590632 None:intergenic 15.0%
!! AAAAATAAAGAAATACCATT+AGG + chr3_4:66590715-66590734 Msa0515360:intron 15.0%
!! AAAATAAAGAAATACCATTA+GGG + chr3_4:66590716-66590735 Msa0515360:intron 15.0%
!!! AACTTAACTTACTTTAATTT+GGG - chr3_4:66591266-66591285 None:intergenic 15.0%
!! AAACTTAACTTACTTTAATT+TGG - chr3_4:66591267-66591286 None:intergenic 15.0%
!!! TAAAGTAAGTTAAGTTTTTT+CGG + chr3_4:66591270-66591289 Msa0515360:intron 15.0%
!!! TCATTTTTTTTTTTTTCAGA+AGG - chr3_4:66591999-66592018 None:intergenic 15.0%
!!! TTATAACTGACAATAAATTT+TGG - chr3_4:66592668-66592687 None:intergenic 15.0%
!! TTGAATAAAACATTATTTGA+TGG - chr3_4:66592820-66592839 None:intergenic 15.0%
!!! TTTATTATTTTTGTTGAAGA+TGG - chr3_4:66593053-66593072 None:intergenic 15.0%
!! AAGAAAAAGAAGAATAAAAA+AGG - chr3_4:66593572-66593591 None:intergenic 15.0%
!!! TTGGATTGTTTATTTTATTT+AGG + chr3_4:66593940-66593959 Msa0515360:intron 15.0%
!!! TATTTAGGCTTTTAATTTTT+AGG + chr3_4:66593955-66593974 Msa0515360:intron 15.0%
!!! TTGGATTGTTTATTTTATTT+AGG + chr3_4:66593940-66593959 Msa0515360:intron 15.0%
!!! TATGACATTTTATTCTATTT+TGG + chr3_4:66594365-66594384 Msa0515360:intron 15.0%
!!! ATGACATTTTATTCTATTTT+GGG + chr3_4:66594366-66594385 Msa0515360:intron 15.0%
!!! TAATAATTGAAGGATAATTT+TGG - chr3_4:66594569-66594588 None:intergenic 15.0%
!!! AATCTTTGATATCAAATTTT+AGG - chr3_4:66594966-66594985 None:intergenic 15.0%
!!! ATTTAATTAAATTAGTCTTC+AGG - chr3_4:66596077-66596096 None:intergenic 15.0%
!! AGACTAATTTAATTAAATAC+AGG + chr3_4:66596079-66596098 Msa0515360:intron 15.0%
!!! ACTTTTTTTGTTATTAGAAA+AGG + chr3_4:66596365-66596384 Msa0515360:intron 15.0%
!! AACAGTAAAATTTAAACTTA+AGG + chr3_4:66596405-66596424 Msa0515360:intron 15.0%
!!! ATTTTTATGAAAATATTTGC+AGG + chr3_4:66596915-66596934 Msa0515360:intron 15.0%
!!! AATTCAATTGGTTTTATCAT+CGG - chr3_4:66587288-66587307 None:intergenic 20.0%
!!! TTTTGAAATTTGAACTTAGA+TGG + chr3_4:66587974-66587993 Msa0515360:intron 20.0%
!!! TACATTTTTTTTGTTTGTTC+AGG + chr3_4:66588014-66588033 Msa0515360:intron 20.0%
!!! AAAATTTTGGTAACGTATAT+AGG + chr3_4:66588613-66588632 Msa0515360:intron 20.0%
!!! ATTTTCAAAATGACATGAAA+GGG - chr3_4:66588805-66588824 None:intergenic 20.0%
!!! TATTTTCAAAATGACATGAA+AGG - chr3_4:66588806-66588825 None:intergenic 20.0%
!!! AAGTTTTAAAGTTTATTTGC+CGG + chr3_4:66589098-66589117 Msa0515360:intron 20.0%
!!! TACTTTTAGATTTGTGTTTA+TGG + chr3_4:66589246-66589265 Msa0515360:intron 20.0%
!!! ACTTTTAGATTTGTGTTTAT+GGG + chr3_4:66589247-66589266 Msa0515360:intron 20.0%
!! ACAGTAAAATGAAGAAAAAA+AGG - chr3_4:66589816-66589835 None:intergenic 20.0%
!! ATAAGGCTAAAAATATTCTT+TGG + chr3_4:66590626-66590645 Msa0515360:intron 20.0%
!! TAAGGCTAAAAATATTCTTT+GGG + chr3_4:66590627-66590646 Msa0515360:intron 20.0%
!! TTCATAGTCTAAACTTTAAA+AGG - chr3_4:66590962-66590981 None:intergenic 20.0%
!!! TTTTATACGTTAGAATTTCT+TGG - chr3_4:66591230-66591249 None:intergenic 20.0%
!!! AACTTCTGAGTTTTATATTT+TGG - chr3_4:66591311-66591330 None:intergenic 20.0%
!!! TTTTTTTTAAAGGAGCAAAA+TGG + chr3_4:66591550-66591569 Msa0515360:intron 20.0%
!! ATAATAAATCTCACTTTCTA+TGG + chr3_4:66591918-66591937 Msa0515360:intron 20.0%
!! TAATAAATCTCACTTTCTAT+GGG + chr3_4:66591919-66591938 Msa0515360:intron 20.0%
!! AAAAAAAATGAAATTCACTC+AGG + chr3_4:66592008-66592027 Msa0515360:intron 20.0%
!! AAAAAATAATAATATGTGGG+TGG - chr3_4:66592122-66592141 None:intergenic 20.0%
!!! ATTCACACATTTTAAATTCA+AGG + chr3_4:66592321-66592340 Msa0515360:intron 20.0%
!!! TTCACACATTTTAAATTCAA+GGG + chr3_4:66592322-66592341 Msa0515360:intron 20.0%
!!! AAGTTCATGGAATATTTTTA+GGG - chr3_4:66592507-66592526 None:intergenic 20.0%
!! AATAAATAAATTTAGGAACC+AGG - chr3_4:66592614-66592633 None:intergenic 20.0%
!! ATTAATCCTCAACTTATATA+TGG + chr3_4:66592746-66592765 Msa0515360:intron 20.0%
!! TTAATCCTCAACTTATATAT+GGG + chr3_4:66592747-66592766 Msa0515360:intron 20.0%
!! AGAAAATAAGTGATAGAAAT+GGG + chr3_4:66592844-66592863 Msa0515360:intron 20.0%
!!! ATAATATTGTTGTCTCTTTT+TGG - chr3_4:66592883-66592902 None:intergenic 20.0%
!!! TATTATTTGTCACTCATTTT+GGG - chr3_4:66593225-66593244 None:intergenic 20.0%
!!! TTTTATTCTTCTTTTTCTTG+TGG + chr3_4:66593573-66593592 Msa0515360:intron 20.0%
!!! TTGAATTTTAACACAATGTT+AGG + chr3_4:66594149-66594168 Msa0515360:intron 20.0%
!! ATAATAAACCTATCACATTA+AGG - chr3_4:66594227-66594246 None:intergenic 20.0%
!!! GGTTTATTATTTAGAACATT+TGG + chr3_4:66594237-66594256 Msa0515360:intron 20.0%
!!! GAATGTTTTACATCTATAAA+TGG + chr3_4:66594434-66594453 Msa0515360:intron 20.0%
!! ATTTCTCTCTTAATAATTGA+AGG - chr3_4:66594579-66594598 None:intergenic 20.0%
!! ATTATTAAGAGAGAAATGAT+TGG + chr3_4:66594582-66594601 Msa0515360:intron 20.0%
!! TTAATTATCTTCATCTAATC+CGG + chr3_4:66594609-66594628 Msa0515360:intron 20.0%
!!! CAAAGAAATATTGGAATTTT+TGG - chr3_4:66595076-66595095 None:intergenic 20.0%
!! AAAAAGAAGCAAAGAAATAT+TGG - chr3_4:66595085-66595104 None:intergenic 20.0%
!!! ATAATTTTCTCATTTCCAAT+AGG - chr3_4:66595110-66595129 None:intergenic 20.0%
!! TGGAAATGAGAAAATTATTA+CGG + chr3_4:66595112-66595131 Msa0515360:intron 20.0%
!! TTATAAATTCATATGTTGCA+TGG + chr3_4:66595175-66595194 Msa0515360:intron 20.0%
!! TTCACATATAAATACTCTTA+AGG + chr3_4:66595475-66595494 Msa0515360:intron 20.0%
!!! AATCAAGAATAATCTCATTT+TGG - chr3_4:66595740-66595759 None:intergenic 20.0%
!! ATTTAATTAAATACAGGTTG+AGG + chr3_4:66596085-66596104 Msa0515360:intron 20.0%
!!! TAAACGGATTTTAATACAAA+AGG - chr3_4:66596316-66596335 None:intergenic 20.0%
!!! TAAAAAGTACAAAATTGACT+AGG - chr3_4:66596435-66596454 None:intergenic 20.0%
!!! GTCAATTTTGTACTTTTTAT+CGG + chr3_4:66596436-66596455 Msa0515360:intron 20.0%
!! GTCAAACAAATATAATCTTA+GGG - chr3_4:66596479-66596498 None:intergenic 20.0%
!! AGTCAAACAAATATAATCTT+AGG - chr3_4:66596480-66596499 None:intergenic 20.0%
!! AATTGATAAACATGGTAAAA+AGG - chr3_4:66597270-66597289 None:intergenic 20.0%
!!! TACCATGTTTATCAATTTTT+CGG + chr3_4:66597273-66597292 Msa0515360:three_prime_UTR 20.0%
!! AATGTTGTGTTTTCAAATGT+GGG - chr3_4:66587254-66587273 None:intergenic 25.0%
!! TAATGTTGTGTTTTCAAATG+TGG - chr3_4:66587255-66587274 None:intergenic 25.0%
! TTTGAAAACACAACATTAGA+TGG + chr3_4:66587257-66587276 Msa0515360:five_prime_UTR 25.0%
!! AATAACAAGAGAAAAGGTTT+TGG - chr3_4:66587343-66587362 None:intergenic 25.0%
! GTTGAAAACAAAGTAGTAAT+GGG - chr3_4:66587433-66587452 None:intergenic 25.0%
! AGTTGAAAACAAAGTAGTAA+TGG - chr3_4:66587434-66587453 None:intergenic 25.0%
! AATCATGATAGATTGTTACT+CGG + chr3_4:66587688-66587707 Msa0515360:CDS 25.0%
!!! TATGATATTTTTTGATCGCA+AGG + chr3_4:66588507-66588526 Msa0515360:intron 25.0%
! TAAAGATATACATATCCTAC+TGG + chr3_4:66588728-66588747 Msa0515360:intron 25.0%
! TAACAAGTGATATTGTTCAT+AGG + chr3_4:66588928-66588947 Msa0515360:intron 25.0%
!!! AGAACTTGTTAAAGAGAAAA+TGG - chr3_4:66588977-66588996 None:intergenic 25.0%
! AAAGTCAATTCTATTTCACA+TGG + chr3_4:66589125-66589144 Msa0515360:intron 25.0%
! CAATACTACTAGAAATTTAC+AGG - chr3_4:66589162-66589181 None:intergenic 25.0%
! GAACTAAATTACTAAAACGA+TGG - chr3_4:66589307-66589326 None:intergenic 25.0%
! AAATCACTTGTAAATATTGC+TGG + chr3_4:66589452-66589471 Msa0515360:CDS 25.0%
! TATTCTTGAATTAATAGCTG+AGG + chr3_4:66589973-66589992 Msa0515360:CDS 25.0%
!!! TTTTACCTTGTTTGATGTAT+CGG - chr3_4:66590160-66590179 None:intergenic 25.0%
! TACATCAAACAAGGTAAAAA+AGG + chr3_4:66590161-66590180 Msa0515360:CDS 25.0%
! ACATCAAACAAGGTAAAAAA+GGG + chr3_4:66590162-66590181 Msa0515360:CDS 25.0%
!! GAATTTTCTTGTCTTCAAAA+AGG + chr3_4:66590478-66590497 Msa0515360:CDS 25.0%
!!! ATATGCTTTTAGCTTTTAGA+AGG - chr3_4:66590687-66590706 None:intergenic 25.0%
!! TTTTCTTCCAGTAGTATATA+AGG + chr3_4:66590800-66590819 Msa0515360:intron 25.0%
! CAACTCATGGTTAATTTATA+GGG - chr3_4:66590896-66590915 None:intergenic 25.0%
! TCAACTCATGGTTAATTTAT+AGG - chr3_4:66590897-66590916 None:intergenic 25.0%
!!! TTGTTCTTTTGATGATGAAT+CGG + chr3_4:66591050-66591069 Msa0515360:intron 25.0%
! CAAAATAAACAGAAGTTCAT+AGG + chr3_4:66591467-66591486 Msa0515360:intron 25.0%
!!! AGCCACATGTTTTTTTTTAA+AGG + chr3_4:66591540-66591559 Msa0515360:intron 25.0%
!! CTCCTTTAAAAAAAAACATG+TGG - chr3_4:66591545-66591564 None:intergenic 25.0%
!!! TCCTTTAAGATTGTTTTTAC+CGG - chr3_4:66591631-66591650 None:intergenic 25.0%
! CAAACAAGCTAAAGTAAATA+TGG - chr3_4:66591730-66591749 None:intergenic 25.0%
! TTGTACAAAATTGAATTCCT+TGG - chr3_4:66591774-66591793 None:intergenic 25.0%
! TTGTGAATTATATGTTCAAC+TGG + chr3_4:66591877-66591896 Msa0515360:intron 25.0%
! ATTATTACTATCAACCATCA+AGG - chr3_4:66591903-66591922 None:intergenic 25.0%
! AATAACTACCTTAACATATG+TGG - chr3_4:66592289-66592308 None:intergenic 25.0%
!! GAATTTAAAATGTGTGAATG+TGG - chr3_4:66592320-66592339 None:intergenic 25.0%
!!! CTTTTACTTTTGCTGTTTAT+CGG + chr3_4:66592389-66592408 Msa0515360:intron 25.0%
! TCACAGTACTTAAATAGATA+TGG + chr3_4:66592414-66592433 Msa0515360:intron 25.0%
!!! AGTTCATGGAATATTTTTAG+GGG - chr3_4:66592506-66592525 None:intergenic 25.0%
!! ATAAATTTTGGATTTGCATG+AGG - chr3_4:66592656-66592675 None:intergenic 25.0%
! GGATTAATGATCACAATATA+TGG - chr3_4:66592734-66592753 None:intergenic 25.0%
! TTATATATGGGATACACAAA+GGG + chr3_4:66592759-66592778 Msa0515360:intron 25.0%
! GAGAAAATAAGTGATAGAAA+TGG + chr3_4:66592843-66592862 Msa0515360:intron 25.0%
!! CTATTATTTGTCACTCATTT+TGG - chr3_4:66593226-66593245 None:intergenic 25.0%
!!! AGAGTGTATTATTTCTGAAA+TGG + chr3_4:66593274-66593293 Msa0515360:intron 25.0%
!!! GAGTGTATTATTTCTGAAAT+GGG + chr3_4:66593275-66593294 Msa0515360:intron 25.0%
! AAGGTTTAGAGATGATAATA+TGG + chr3_4:66593331-66593350 Msa0515360:intron 25.0%
!! CATAAGAAATCTTTTTCCAA+AGG - chr3_4:66593377-66593396 None:intergenic 25.0%
! TCGAATATTAACACAATGTT+AGG + chr3_4:66593806-66593825 Msa0515360:intron 25.0%
!!! TGGTTTTATATCTAACAACT+GGG - chr3_4:66593853-66593872 None:intergenic 25.0%
!!! ATGGTTTTATATCTAACAAC+TGG - chr3_4:66593854-66593873 None:intergenic 25.0%
!!! GGTTTATGTTTTAGAACATT+TGG + chr3_4:66593894-66593913 Msa0515360:intron 25.0%
!! GACTGTTTTACATCTATAAA+TGG + chr3_4:66594088-66594107 Msa0515360:intron 25.0%
!!! TGGTTTTATATCTAACAACT+GGG - chr3_4:66593853-66593872 None:intergenic 25.0%
!!! ATGGTTTTATATCTAACAAC+TGG - chr3_4:66593854-66593873 None:intergenic 25.0%
! TAATTATCTTCATCTAATCC+GGG + chr3_4:66594610-66594629 Msa0515360:intron 25.0%
!! ATCTTTTTACAAAAGTAACC+CGG - chr3_4:66594631-66594650 None:intergenic 25.0%
!! TAGTTTGAAAAGAGTCTTAT+AGG + chr3_4:66594666-66594685 Msa0515360:intron 25.0%
!! AGTTTGAAAAGAGTCTTATA+GGG + chr3_4:66594667-66594686 Msa0515360:intron 25.0%
! TTTATATCAATCAACTATCC+AGG + chr3_4:66594855-66594874 Msa0515360:intron 25.0%
! TTATATCAATCAACTATCCA+GGG + chr3_4:66594856-66594875 Msa0515360:intron 25.0%
! TTATGACATTTCTTTGATTG+TGG - chr3_4:66594925-66594944 None:intergenic 25.0%
! TCTAGATGAGTATAGTATTT+GGG + chr3_4:66595152-66595171 Msa0515360:intron 25.0%
!!! CGAGATTTTTAGAAAAACTA+AGG + chr3_4:66595232-66595251 Msa0515360:intron 25.0%
!!! TTTTTAGAAAAACTAAGGCA+TGG + chr3_4:66595237-66595256 Msa0515360:intron 25.0%
!!! TTTTAGAAAAACTAAGGCAT+GGG + chr3_4:66595238-66595257 Msa0515360:intron 25.0%
! AGTATTTATATGTGAAGCAT+GGG - chr3_4:66595471-66595490 None:intergenic 25.0%
! ATGATTATCAAACTCTACAT+AGG + chr3_4:66595805-66595824 Msa0515360:intron 25.0%
! TGATTATCAAACTCTACATA+GGG + chr3_4:66595806-66595825 Msa0515360:intron 25.0%
!!! TTTTGCATTTTTTGCTGTAA+AGG + chr3_4:66595875-66595894 Msa0515360:intron 25.0%
!!! CATTACAACAAAGTTCTAAA+CGG - chr3_4:66596332-66596351 None:intergenic 25.0%
!!! GAACTTTGTTGTAATGTTTT+AGG + chr3_4:66596336-66596355 Msa0515360:intron 25.0%
! TTTGTTTGACTGTTAGAAAA+TGG + chr3_4:66596489-66596508 Msa0515360:intron 25.0%
! TTGTTTGACTGTTAGAAAAT+GGG + chr3_4:66596490-66596509 Msa0515360:intron 25.0%
! TTGCTTTGCATTAAAATATG+TGG + chr3_4:66596548-66596567 Msa0515360:intron 25.0%
! TGCTTTGCATTAAAATATGT+GGG + chr3_4:66596549-66596568 Msa0515360:intron 25.0%
!! TGATTTTTCATTCAAAAGCT+TGG + chr3_4:66596657-66596676 Msa0515360:intron 25.0%
! AAAGTGGAATACATGAAATA+GGG - chr3_4:66596695-66596714 None:intergenic 25.0%
! AAAAGTGGAATACATGAAAT+AGG - chr3_4:66596696-66596715 None:intergenic 25.0%
! TGATCATTAACTTAGTATAG+CGG + chr3_4:66596728-66596747 Msa0515360:intron 25.0%
! ACTCAAGTTATTTAACAGTT+TGG - chr3_4:66597226-66597245 None:intergenic 25.0%
AAAACACAACATTAGATGGA+TGG + chr3_4:66587261-66587280 Msa0515360:five_prime_UTR 30.0%
GATGAAGAAAGGTTTATGAA+TGG - chr3_4:66587407-66587426 None:intergenic 30.0%
! TTTGTGTCATTCATTGAATG+AGG + chr3_4:66588095-66588114 Msa0515360:CDS 30.0%
! CACACAACAATTTTCTGTTT+GGG - chr3_4:66588140-66588159 None:intergenic 30.0%
! ACAGATACGTTTAGAGTATT+CGG - chr3_4:66588176-66588195 None:intergenic 30.0%
TACTCTAAACGTATCTGTAT+TGG + chr3_4:66588178-66588197 Msa0515360:intron 30.0%
GATACATATCAGATACTTCA+AGG + chr3_4:66588286-66588305 Msa0515360:intron 30.0%
CATATCTAGCATACATATCT+TGG + chr3_4:66588322-66588341 Msa0515360:intron 30.0%
GGATATATGTGAGAAATTAG+TGG + chr3_4:66588343-66588362 Msa0515360:intron 30.0%
ATATACATATCCTACTGGTA+TGG + chr3_4:66588733-66588752 Msa0515360:intron 30.0%
TCATATTATGCCATCTAATG+AGG - chr3_4:66588842-66588861 None:intergenic 30.0%
GATGGCATAATATGAATGAT+CGG + chr3_4:66588847-66588866 Msa0515360:intron 30.0%
ATGGAAAAGAAATAAAGCCT+CGG - chr3_4:66588958-66588977 None:intergenic 30.0%
! AATAGAATTGACTTTCTTGC+CGG - chr3_4:66589120-66589139 None:intergenic 30.0%
CAAGTGATTTCAATTCTTTG+CGG - chr3_4:66589442-66589461 None:intergenic 30.0%
! TTTCCTTTTCTGATGTTGAA+AGG + chr3_4:66589561-66589580 Msa0515360:CDS 30.0%
GAGATATATTGTCATTCTAG+TGG + chr3_4:66589692-66589711 Msa0515360:intron 30.0%
! TTTTCTTTCTATCCTTTCAC+AGG + chr3_4:66589719-66589738 Msa0515360:intron 30.0%
! AATCTCTTTTCTTTTGCACA+GGG + chr3_4:66589842-66589861 Msa0515360:intron 30.0%
TGAAAATTGTTCCTGAACTT+GGG + chr3_4:66589912-66589931 Msa0515360:CDS 30.0%
ATATCTAGCATACTTACCAA+TGG + chr3_4:66589946-66589965 Msa0515360:CDS 30.0%
AATTCAAGAATATGAGCCAT+TGG - chr3_4:66589965-66589984 None:intergenic 30.0%
TTTGTCAAAACATGCAAGAT+AGG - chr3_4:66590064-66590083 None:intergenic 30.0%
CATCAAACAAGGTAAAAAAG+GGG + chr3_4:66590163-66590182 Msa0515360:CDS 30.0%
! CGTATTCGTTTTATACTATG+TGG + chr3_4:66590521-66590540 Msa0515360:CDS 30.0%
! ATTCGTTTTATACTATGTGG+TGG + chr3_4:66590524-66590543 Msa0515360:CDS 30.0%
AGATTCATCAACATTTGTCT+TGG + chr3_4:66590572-66590591 Msa0515360:CDS 30.0%
GATTCATCAACATTTGTCTT+GGG + chr3_4:66590573-66590592 Msa0515360:CDS 30.0%
GAAAAGAAAACAGATTCTTC+AGG - chr3_4:66590785-66590804 None:intergenic 30.0%
AAAAATCAGTAGTCTTTGCT+TGG - chr3_4:66590854-66590873 None:intergenic 30.0%
! AAATTAACCATGAGTTGAGA+AGG + chr3_4:66590899-66590918 Msa0515360:intron 30.0%
!!! AGTTTTTTCGGTTTCTTCAT+AGG + chr3_4:66591282-66591301 Msa0515360:intron 30.0%
TGCTGTAACAGATATGTTAT+GGG - chr3_4:66591392-66591411 None:intergenic 30.0%
TTGCTGTAACAGATATGTTA+TGG - chr3_4:66591393-66591412 None:intergenic 30.0%
! TATTTTGTGAAATCACAGTG+CGG - chr3_4:66591454-66591473 None:intergenic 30.0%
AGGAAAAAATATCCTCAAAG+TGG + chr3_4:66591487-66591506 Msa0515360:intron 30.0%
!!! AAGATTGTTTTTACCGGTAT+TGG - chr3_4:66591625-66591644 None:intergenic 30.0%
ACCGGTAAAAACAATCTTAA+AGG + chr3_4:66591627-66591646 Msa0515360:intron 30.0%
!!! TCGTGGTTTTTTAAGTTTGA+CGG - chr3_4:66591669-66591688 None:intergenic 30.0%
TGATGTTTCTTTGTGAACAT+AGG - chr3_4:66591703-66591722 None:intergenic 30.0%
! TTAACATATGTGGAAGGTTT+TGG - chr3_4:66592279-66592298 None:intergenic 30.0%
AAAACCTTCCACATATGTTA+AGG + chr3_4:66592278-66592297 Msa0515360:CDS 30.0%
CAGCAAAAGTAAAAGGAAAA+AGG - chr3_4:66592384-66592403 None:intergenic 30.0%
CGATAAACAGCAAAAGTAAA+AGG - chr3_4:66592391-66592410 None:intergenic 30.0%
CATATTATCACTGCACTTAT+AGG + chr3_4:66592459-66592478 Msa0515360:intron 30.0%
!!! GTTCATGGAATATTTTTAGG+GGG - chr3_4:66592505-66592524 None:intergenic 30.0%
!! TGCAGTGCTTTCTTTTATTT+AGG + chr3_4:66592548-66592567 Msa0515360:intron 30.0%
! TTGTCAGTTATAACAGCTTT+TGG + chr3_4:66592675-66592694 Msa0515360:intron 30.0%
! TGTCAGTTATAACAGCTTTT+GGG + chr3_4:66592676-66592695 Msa0515360:intron 30.0%
TGTATCCCATATATAAGTTG+AGG - chr3_4:66592755-66592774 None:intergenic 30.0%
CTTATATATGGGATACACAA+AGG + chr3_4:66592758-66592777 Msa0515360:intron 30.0%
! ATATTGTTGTCTCTTTTTGG+AGG - chr3_4:66592880-66592899 None:intergenic 30.0%
TATTTCATTCTCCATGAGAA+GGG + chr3_4:66592962-66592981 Msa0515360:intron 30.0%
!!! AATTTTAAGGCCAAGAAGTT+GGG - chr3_4:66593087-66593106 None:intergenic 30.0%
! CAAAGTCCTGATGAATTTTA+AGG - chr3_4:66593100-66593119 None:intergenic 30.0%
!! TGTATTATTTCTGAAATGGG+AGG + chr3_4:66593278-66593297 Msa0515360:intron 30.0%
GGATGTATTTGCTTAAAAGA+AGG + chr3_4:66593312-66593331 Msa0515360:intron 30.0%
GTTTAGAGATGATAATATGG+TGG + chr3_4:66593334-66593353 Msa0515360:intron 30.0%
!! TTATTTTACCTATCTGCCTT+TGG + chr3_4:66593358-66593377 Msa0515360:intron 30.0%
GGAAAAAGATTTCTTATGCA+AGG + chr3_4:66593379-66593398 Msa0515360:intron 30.0%
AGATTTCTTATGCAAGGATT+TGG + chr3_4:66593385-66593404 Msa0515360:intron 30.0%
! ACCTAATAGCTTAAGCTTTT+AGG + chr3_4:66593695-66593714 Msa0515360:intron 30.0%
TCCTAAAAGCTTAAGCTATT+AGG - chr3_4:66593699-66593718 None:intergenic 30.0%
ATATTAACACAATGTTAGGC+AGG + chr3_4:66593810-66593829 Msa0515360:intron 30.0%
TTATATCTAACAACTGGGTA+GGG - chr3_4:66593848-66593867 None:intergenic 30.0%
TTTATATCTAACAACTGGGT+AGG - chr3_4:66593849-66593868 None:intergenic 30.0%
AAACCATTCATGAATCTTAC+CGG + chr3_4:66593867-66593886 Msa0515360:intron 30.0%
TGGGTTATCTTATTCCAATT+TGG + chr3_4:66594039-66594058 Msa0515360:intron 30.0%
GGGTTATCTTATTCCAATTT+GGG + chr3_4:66594040-66594059 Msa0515360:intron 30.0%
ATCCTTACTGTTCACTTTAA+AGG - chr3_4:66594115-66594134 None:intergenic 30.0%
! AACAGTAAGGATCTTTGAAA+CGG + chr3_4:66594123-66594142 Msa0515360:intron 30.0%
!! ATTTTAACACAATGTTAGGC+AGG + chr3_4:66594153-66594172 Msa0515360:intron 30.0%
TTATATCTAACAACTGGGTT+GGG - chr3_4:66594191-66594210 None:intergenic 30.0%
TTTATATCTAACAACTGGGT+TGG - chr3_4:66593849-66593868 None:intergenic 30.0%
ATCACATTAAGGTTCATGAA+TGG - chr3_4:66594216-66594235 None:intergenic 30.0%
TTCATGAACCTTAATGTGAT+AGG + chr3_4:66594216-66594235 Msa0515360:intron 30.0%
TGGGTTATCTTATTCCAATT+TGG + chr3_4:66594039-66594058 Msa0515360:intron 30.0%
GGGTTATCTTATTCCAATTT+GGG + chr3_4:66594040-66594059 Msa0515360:intron 30.0%
AAACTATTTGTGACCCAAAT+TGG - chr3_4:66594402-66594421 None:intergenic 30.0%
TTGGGTCACAAATAGTTTAT+TGG + chr3_4:66594404-66594423 Msa0515360:intron 30.0%
TGGGTCACAAATAGTTTATT+GGG + chr3_4:66594405-66594424 Msa0515360:intron 30.0%
! TCAAGAGGGTTTTACATATA+GGG + chr3_4:66594703-66594722 Msa0515360:intron 30.0%
AACTCAATATCATACTACCT+CGG - chr3_4:66594730-66594749 None:intergenic 30.0%
!!! GAAATATTGGAATTTTTGGC+AGG - chr3_4:66595072-66595091 None:intergenic 30.0%
! TTTGCTTCTTTTTGTCCTAT+TGG + chr3_4:66595092-66595111 Msa0515360:intron 30.0%
CTCTAGATGAGTATAGTATT+TGG + chr3_4:66595151-66595170 Msa0515360:intron 30.0%
CATCACAAATCAAAAGAGTT+AGG + chr3_4:66595337-66595356 Msa0515360:intron 30.0%
GAAATAAATATACACAGCCA+AGG + chr3_4:66595359-66595378 Msa0515360:intron 30.0%
GAGTATTTATATGTGAAGCA+TGG - chr3_4:66595472-66595491 None:intergenic 30.0%
! GTTTGAGATACACTCTAAAA+AGG - chr3_4:66595673-66595692 None:intergenic 30.0%
AAGCGTGCTACATTTATTAA+GGG + chr3_4:66595705-66595724 Msa0515360:intron 30.0%
TTTAAGTGTTTACACTACCA+AGG + chr3_4:66595764-66595783 Msa0515360:intron 30.0%
TTAAGTGTTTACACTACCAA+GGG + chr3_4:66595765-66595784 Msa0515360:intron 30.0%
! TGTAGAGTTTGATAATCATC+CGG - chr3_4:66595804-66595823 None:intergenic 30.0%
! TTTTCCTATCAATGATCTCA+AGG - chr3_4:66595965-66595984 None:intergenic 30.0%
TGAGATCATTGATAGGAAAA+AGG + chr3_4:66595965-66595984 Msa0515360:CDS 30.0%
AACATAATGTTGTCCACAAA+GGG - chr3_4:66596128-66596147 None:intergenic 30.0%
! TTCTTTTCAAAGTTACTGTG+TGG + chr3_4:66596157-66596176 Msa0515360:CDS 30.0%
TGTTTGACTGTTAGAAAATG+GGG + chr3_4:66596491-66596510 Msa0515360:intron 30.0%
CATTAAAATATGTGGGATGA+TGG + chr3_4:66596556-66596575 Msa0515360:intron 30.0%
CAAAAGAACAAAAATTCGAG+TGG - chr3_4:66596611-66596630 None:intergenic 30.0%
TCATTTGAGAATGTGAAAAG+TGG - chr3_4:66596711-66596730 None:intergenic 30.0%
ATACAAATTCATAACGTACC+TGG + chr3_4:66596751-66596770 Msa0515360:intron 30.0%
!! AGCTTGTTAGTATGATAACT+TGG + chr3_4:66596799-66596818 Msa0515360:intron 30.0%
!! GAAAGCAATTTAAGTTTTGC+AGG - chr3_4:66596976-66596995 None:intergenic 30.0%
CAAATAGACAAAACCAAACT+CGG + chr3_4:66597098-66597117 Msa0515360:exon 30.0%
!!! ACTTCTTTTAGTTTTTCCTC+TGG + chr3_4:66597150-66597169 Msa0515360:three_prime_UTR 30.0%
!!! CTTCTTTTAGTTTTTCCTCT+GGG + chr3_4:66597151-66597170 Msa0515360:three_prime_UTR 30.0%
! TTTGGTAATCTACTCAACTA+GGG - chr3_4:66597208-66597227 None:intergenic 30.0%
GACCGAAAAATTGATAAACA+TGG - chr3_4:66597278-66597297 None:intergenic 30.0%
ATGTGGGATGGTTCTTAAAT+TGG - chr3_4:66587238-66587257 None:intergenic 35.0%
! TTGTGTTTTCAAATGTGGGA+TGG - chr3_4:66587250-66587269 None:intergenic 35.0%
AAAGCAATGTAGAAAGAGTG+GGG - chr3_4:66587370-66587389 None:intergenic 35.0%
GAAAGCAATGTAGAAAGAGT+GGG - chr3_4:66587371-66587390 None:intergenic 35.0%
TGAAAGCAATGTAGAAAGAG+TGG - chr3_4:66587372-66587391 None:intergenic 35.0%
TGAATTGATCTCACGTGAAA+TGG + chr3_4:66587717-66587736 Msa0515360:CDS 35.0%
GAAATGGAAACTTCTTCTGA+TGG + chr3_4:66587733-66587752 Msa0515360:CDS 35.0%
!! TTCATCTTGGAGAGTATCAA+TGG + chr3_4:66587773-66587792 Msa0515360:CDS 35.0%
!! TCATCTTGGAGAGTATCAAT+GGG + chr3_4:66587774-66587793 Msa0515360:CDS 35.0%
!! AGTATCAATGGGTTACGTAT+GGG + chr3_4:66587785-66587804 Msa0515360:CDS 35.0%
AGAATGGTTTATTGCATTGC+AGG + chr3_4:66587903-66587922 Msa0515360:CDS 35.0%
TAACAACAGTCACATTTCTC+CGG - chr3_4:66588047-66588066 None:intergenic 35.0%
TGTTACCATTTATGCTTCGT+TGG + chr3_4:66588062-66588081 Msa0515360:CDS 35.0%
GTTACCATTTATGCTTCGTT+GGG + chr3_4:66588063-66588082 Msa0515360:CDS 35.0%
! AATTTTCTGTTTGGGAAGAG+TGG - chr3_4:66588132-66588151 None:intergenic 35.0%
! GCACACAACAATTTTCTGTT+TGG - chr3_4:66588141-66588160 None:intergenic 35.0%
ACTCATACTTTGCAGATACT+TGG + chr3_4:66588203-66588222 Msa0515360:intron 35.0%
CTCATACTTTGCAGATACTT+GGG + chr3_4:66588204-66588223 Msa0515360:intron 35.0%
TCATACTTTGCAGATACTTG+GGG + chr3_4:66588205-66588224 Msa0515360:intron 35.0%
GAAATTAGTGGAGATGTAAG+CGG + chr3_4:66588355-66588374 Msa0515360:intron 35.0%
AAATTAGTGGAGATGTAAGC+GGG + chr3_4:66588356-66588375 Msa0515360:intron 35.0%
TTTATGGACACCTCATTAGA+TGG + chr3_4:66588829-66588848 Msa0515360:intron 35.0%
!! ACTGAGTTTGCAAGTTTTGT+TGG + chr3_4:66588897-66588916 Msa0515360:intron 35.0%
!!! CTGAGTTTGCAAGTTTTGTT+GGG + chr3_4:66588898-66588917 Msa0515360:intron 35.0%
ACTGCTCAACATGTAATTTC+TGG + chr3_4:66589064-66589083 Msa0515360:intron 35.0%
CAATGCTGCTAGAAATTTAC+AGG - chr3_4:66589221-66589240 None:intergenic 35.0%
AAGCCTTTCAACATCAGAAA+AGG - chr3_4:66589567-66589586 None:intergenic 35.0%
! TTTTCTGATGTTGAAAGGCT+TGG + chr3_4:66589566-66589585 Msa0515360:CDS 35.0%
GCAGTTATAATGTACACAAG+TGG + chr3_4:66589635-66589654 Msa0515360:CDS 35.0%
TCAAAGATGCTTCTAACCTT+AGG - chr3_4:66589674-66589693 None:intergenic 35.0%
TAGACTCTAGGCTACTATTT+AGG - chr3_4:66589754-66589773 None:intergenic 35.0%
! GAATCTCTTTTCTTTTGCAC+AGG + chr3_4:66589841-66589860 Msa0515360:intron 35.0%
GTGAAAATTGTTCCTGAACT+TGG + chr3_4:66589911-66589930 Msa0515360:CDS 35.0%
CAGTAACACTTCAGCATATA+GGG + chr3_4:66590006-66590025 Msa0515360:intron 35.0%
! TAGAATTTGTTTGCTGCTGT+TGG + chr3_4:66590099-66590118 Msa0515360:intron 35.0%
!! GATGTATCGGTTAGAGTTAA+TGG - chr3_4:66590147-66590166 None:intergenic 35.0%
TCTAACCGATACATCAAACA+AGG + chr3_4:66590152-66590171 Msa0515360:CDS 35.0%
AAGGTAAAAAAGGGGACAAA+AGG + chr3_4:66590171-66590190 Msa0515360:CDS 35.0%
AGGTAAAAAAGGGGACAAAA+GGG + chr3_4:66590172-66590191 Msa0515360:CDS 35.0%
GTCATACAGGTAAATGCAAA+GGG + chr3_4:66590356-66590375 Msa0515360:intron 35.0%
AAAAAGGTCCAAGCAATTCT+GGG + chr3_4:66590494-66590513 Msa0515360:CDS 35.0%
AAATACCATTAGGGAAGAGT+AGG + chr3_4:66590725-66590744 Msa0515360:intron 35.0%
GAAGAGTAGGAGTAAAACAA+TGG + chr3_4:66590738-66590757 Msa0515360:intron 35.0%
CTTCCAGTAGTATATAAGGT+CGG + chr3_4:66590804-66590823 Msa0515360:intron 35.0%
TTCCAGTAGTATATAAGGTC+GGG + chr3_4:66590805-66590824 Msa0515360:intron 35.0%
TTAATTTATAGGGAGCTGAG+TGG - chr3_4:66590886-66590905 None:intergenic 35.0%
TCTGTCATAAGTTATGACCA+TGG + chr3_4:66590983-66591002 Msa0515360:intron 35.0%
!!! TTCTTTTGATGATGAATCGG+TGG + chr3_4:66591053-66591072 Msa0515360:intron 35.0%
ATAGCTTAAAGGACCAAATC+CGG - chr3_4:66591147-66591166 None:intergenic 35.0%
! GATTTGGTCCTTTAAGCTAT+TGG + chr3_4:66591147-66591166 Msa0515360:intron 35.0%
TGAAAGGACCAATAGCTTAA+AGG - chr3_4:66591158-66591177 None:intergenic 35.0%
GGTTTATGAAGATGATGAAG+AGG - chr3_4:66591209-66591228 None:intergenic 35.0%
AACAGATATGTTATGGGGTT+GGG - chr3_4:66591386-66591405 None:intergenic 35.0%
TAACAGATATGTTATGGGGT+TGG - chr3_4:66591387-66591406 None:intergenic 35.0%
GCTGTAACAGATATGTTATG+GGG - chr3_4:66591391-66591410 None:intergenic 35.0%
AAAGCTCATGGTCTTTCTTA+GGG - chr3_4:66591418-66591437 None:intergenic 35.0%
! AAAAAAGTGTGGAAAGCTCA+TGG - chr3_4:66591430-66591449 None:intergenic 35.0%
ATATCCTCAAAGTGGTTTAG+AGG + chr3_4:66591495-66591514 Msa0515360:intron 35.0%
ATATCCTCTAAACCACTTTG+AGG - chr3_4:66591502-66591521 None:intergenic 35.0%
!!! TGCGCATTTTGAGACTTAAA+AGG + chr3_4:66591598-66591617 Msa0515360:intron 35.0%
AGACTTAAAAGGACCAATAC+CGG + chr3_4:66591609-66591628 Msa0515360:intron 35.0%
ACAATCTTAAAGGACCAATC+TGG + chr3_4:66591637-66591656 Msa0515360:intron 35.0%
!!! TTTGACGGTTTTTTCCAGAT+TGG - chr3_4:66591654-66591673 None:intergenic 35.0%
AAATGAAATTCACTCAGGAC+TGG + chr3_4:66592013-66592032 Msa0515360:intron 35.0%
!! GATTTTGACGATACTTCTGT+TGG + chr3_4:66592240-66592259 Msa0515360:CDS 35.0%
ACTACCTTAACATATGTGGA+AGG - chr3_4:66592285-66592304 None:intergenic 35.0%
GATGGCTGAGTAAATTCTTT+GGG - chr3_4:66592802-66592821 None:intergenic 35.0%
TGATGGCTGAGTAAATTCTT+TGG - chr3_4:66592803-66592822 None:intergenic 35.0%
TGACATTGAACAGCAATACT+TGG - chr3_4:66592932-66592951 None:intergenic 35.0%
TGGAGAATGAAATAGGATTC+AGG - chr3_4:66592956-66592975 None:intergenic 35.0%
CTTCTCATGGAGAATGAAAT+AGG - chr3_4:66592963-66592982 None:intergenic 35.0%
CTATTTCATTCTCCATGAGA+AGG + chr3_4:66592961-66592980 Msa0515360:intron 35.0%
TTGTTGATCCAATTGCTTTG+TGG - chr3_4:66592988-66593007 None:intergenic 35.0%
!!! GAATTTTAAGGCCAAGAAGT+TGG - chr3_4:66593088-66593107 None:intergenic 35.0%
!! TCTTGGCCTTAAAATTCATC+AGG + chr3_4:66593091-66593110 Msa0515360:intron 35.0%
! ATGTGGAATTTTCTGTATGC+AGG + chr3_4:66593123-66593142 Msa0515360:intron 35.0%
! TCTGAAATGGGAGGAATATA+CGG + chr3_4:66593287-66593306 Msa0515360:intron 35.0%
! ATCTTTTTCCAAAGGCAGAT+AGG - chr3_4:66593369-66593388 None:intergenic 35.0%
! TCTTTTCTCAGTTAATCGAC+TGG + chr3_4:66593411-66593430 Msa0515360:intron 35.0%
AAAGACAAGAGAGTCTTACA+AGG + chr3_4:66593532-66593551 Msa0515360:CDS 35.0%
! TCTTTTTCTTGTGGAGCAAA+AGG + chr3_4:66593582-66593601 Msa0515360:intron 35.0%
CACAAGAACTAACAAAGCAA+TGG - chr3_4:66593648-66593667 None:intergenic 35.0%
ACTTTCGTTTCAAAGAACAG+AGG - chr3_4:66593787-66593806 None:intergenic 35.0%
AACCATTCATGAATCTTACC+GGG + chr3_4:66593868-66593887 Msa0515360:intron 35.0%
! TCTAAAACATAAACCTGTCC+CGG - chr3_4:66593889-66593908 None:intergenic 35.0%
AAACTATTCGTGTCCCAAAT+TGG - chr3_4:66594056-66594075 None:intergenic 35.0%
TTGGGACACGAATAGTTTAT+TGG + chr3_4:66594058-66594077 Msa0515360:intron 35.0%
TGGGACACGAATAGTTTATT+GGG + chr3_4:66594059-66594078 Msa0515360:intron 35.0%
!! GACCTTTAAAGTGAACAGTA+AGG + chr3_4:66594110-66594129 Msa0515360:intron 35.0%
GGGTCACAAATAGTTTATTG+GGG + chr3_4:66594406-66594425 Msa0515360:intron 35.0%
! ACTTTTAGTGCGAACATTTG+AGG + chr3_4:66594457-66594476 Msa0515360:intron 35.0%
TATTGTGAACAATTGCGCTT+TGG - chr3_4:66594534-66594553 None:intergenic 35.0%
GACAGGAAAAATTGTCAAGA+GGG + chr3_4:66594689-66594708 Msa0515360:intron 35.0%
! GTCAAGAGGGTTTTACATAT+AGG + chr3_4:66594702-66594721 Msa0515360:intron 35.0%
AAACCTAGGATACTCATCTA+GGG - chr3_4:66594799-66594818 None:intergenic 35.0%
TAAACCTAGGATACTCATCT+AGG - chr3_4:66594800-66594819 None:intergenic 35.0%
GATGAGTATCCTAGGTTTAT+CGG + chr3_4:66594801-66594820 Msa0515360:intron 35.0%
AACAAAACACCGATAAACCT+AGG - chr3_4:66594813-66594832 None:intergenic 35.0%
TTGTTAAATGAAATGCACCC+TGG - chr3_4:66594876-66594895 None:intergenic 35.0%
!!! CATGTTCCATCCACTTTTTT+TGG + chr3_4:66595002-66595021 Msa0515360:intron 35.0%
TTCATATGTTGCATGGATGT+AGG + chr3_4:66595182-66595201 Msa0515360:intron 35.0%
TATACACAGCCAAGGAAATT+AGG + chr3_4:66595367-66595386 Msa0515360:intron 35.0%
TCTTTCTGTCCTAATTTCCT+TGG - chr3_4:66595379-66595398 None:intergenic 35.0%
AAGGAAATTAGGACAGAAAG+AGG + chr3_4:66595378-66595397 Msa0515360:intron 35.0%
!!! TGGTACTGGTATGACAATTT+TGG + chr3_4:66595441-66595460 Msa0515360:intron 35.0%
! TCCTTATGCAACTAGACTTT+TGG + chr3_4:66595499-66595518 Msa0515360:intron 35.0%
TCCAAAAGTCTAGTTGCATA+AGG - chr3_4:66595503-66595522 None:intergenic 35.0%
GAAGCGTGCTACATTTATTA+AGG + chr3_4:66595704-66595723 Msa0515360:intron 35.0%
TAAGTGTTTACACTACCAAG+GGG + chr3_4:66595766-66595785 Msa0515360:intron 35.0%
!! TTGCTGTAAAGGTTGATGAA+CGG + chr3_4:66595886-66595905 Msa0515360:intron 35.0%
!! AGTCTTCAGGTATTGAGAAT+GGG - chr3_4:66596064-66596083 None:intergenic 35.0%
!! TAGTCTTCAGGTATTGAGAA+TGG - chr3_4:66596065-66596084 None:intergenic 35.0%
ACATAATGTTGTCCACAAAG+GGG - chr3_4:66596127-66596146 None:intergenic 35.0%
CAACATAATGTTGTCCACAA+AGG - chr3_4:66596129-66596148 None:intergenic 35.0%
! GAAAGCATATTTCAGCTCAT+TGG + chr3_4:66596578-66596597 Msa0515360:intron 35.0%
AAGAACAAAAATTCGAGTGG+TGG - chr3_4:66596608-66596627 None:intergenic 35.0%
ATATTTGCAGGAAGCAAAGA+AGG + chr3_4:66596927-66596946 Msa0515360:intron 35.0%
TTAAATTGCTTTCTGACCCA+TGG + chr3_4:66596983-66597002 Msa0515360:CDS 35.0%
!!! CGAGTTTGGTTTTGTCTATT+TGG - chr3_4:66597100-66597119 None:intergenic 35.0%
!!! TTTTAGTTTTTCCTCTGGGA+CGG + chr3_4:66597155-66597174 Msa0515360:three_prime_UTR 35.0%
! GTTTGGTAATCTACTCAACT+AGG - chr3_4:66597209-66597228 None:intergenic 35.0%
GGCGGAAATAACAAGAGAAA+AGG - chr3_4:66587349-66587368 None:intergenic 40.0%
! GTAATGGGAGTGATGAAGAA+AGG - chr3_4:66587418-66587437 None:intergenic 40.0%
ATCTCCGTTAACTTCACTCT+GGG + chr3_4:66587618-66587637 Msa0515360:CDS 40.0%
AAGTTCGAGAAGCTTCATCT+TGG + chr3_4:66587760-66587779 Msa0515360:CDS 40.0%
!! GAGTATCAATGGGTTACGTA+TGG + chr3_4:66587784-66587803 Msa0515360:CDS 40.0%
! TCTGTTTGCAGTTTTGCTTC+TGG + chr3_4:66587820-66587839 Msa0515360:CDS 40.0%
!! TTGCAGTTTTGCTTCTGGTT+TGG + chr3_4:66587825-66587844 Msa0515360:CDS 40.0%
ATGCTGACACTAGAGAAGAA+TGG + chr3_4:66587887-66587906 Msa0515360:CDS 40.0%
TTCTCCCAACGAAGCATAAA+TGG - chr3_4:66588070-66588089 None:intergenic 40.0%
TGAGCAAGAAGAGACTGAAT+CGG + chr3_4:66588388-66588407 Msa0515360:intron 40.0%
TTGCGACTGAACACATAGTA+CGG - chr3_4:66588686-66588705 None:intergenic 40.0%
! CTTCTTTTCACCATACCAGT+AGG - chr3_4:66588746-66588765 None:intergenic 40.0%
ACTGGTATGGTGAAAAGAAG+AGG + chr3_4:66588746-66588765 Msa0515360:intron 40.0%
CTGGTATGGTGAAAAGAAGA+GGG + chr3_4:66588747-66588766 Msa0515360:intron 40.0%
TATTGTTCATAGGTACACCG+AGG + chr3_4:66588938-66588957 Msa0515360:intron 40.0%
TGGTACAGATTTCACAAGTG+AGG - chr3_4:66589392-66589411 None:intergenic 40.0%
GAGGTTACAACTGTGATTTG+TGG + chr3_4:66589416-66589435 Msa0515360:CDS 40.0%
AACTGCAACATCAGCTGAAA+GGG - chr3_4:66589621-66589640 None:intergenic 40.0%
TAACTGCAACATCAGCTGAA+AGG - chr3_4:66589622-66589641 None:intergenic 40.0%
! ATGTACACAAGTGGAAGTAC+AGG + chr3_4:66589644-66589663 Msa0515360:CDS 40.0%
AGGAAAGTCAATCCTGTGAA+AGG - chr3_4:66589734-66589753 None:intergenic 40.0%
ATAGTAGCCTAGAGTCTAGA+TGG + chr3_4:66589756-66589775 Msa0515360:intron 40.0%
! CCTATATGCTGAAGTGTTAC+TGG - chr3_4:66590008-66590027 None:intergenic 40.0%
CCAGTAACACTTCAGCATAT+AGG + chr3_4:66590005-66590024 Msa0515360:intron 40.0%
CATGCAAGATAGGAAAACAG+AGG - chr3_4:66590054-66590073 None:intergenic 40.0%
! AATTTGTTTGCTGCTGTTGG+AGG + chr3_4:66590102-66590121 Msa0515360:CDS 40.0%
GGTAAAAAAGGGGACAAAAG+GGG + chr3_4:66590173-66590192 Msa0515360:CDS 40.0%
ATTCTTGATCGTGTTCGTGA+TGG + chr3_4:66590240-66590259 Msa0515360:CDS 40.0%
!! TCGTGATGGAGTTTTCAAGA+AGG + chr3_4:66590254-66590273 Msa0515360:CDS 40.0%
CACATTGGTGCATAATACAC+AGG - chr3_4:66590311-66590330 None:intergenic 40.0%
ATTCACTCACACTCTCACAT+TGG - chr3_4:66590326-66590345 None:intergenic 40.0%
AATTCGTTCTCTGGTCATAC+AGG + chr3_4:66590343-66590362 Msa0515360:intron 40.0%
GGTCATACAGGTAAATGCAA+AGG + chr3_4:66590355-66590374 Msa0515360:intron 40.0%
ATACAGGTAAATGCAAAGGG+AGG + chr3_4:66590359-66590378 Msa0515360:intron 40.0%
TGCAAAGGGAGGATTATCAA+AGG + chr3_4:66590370-66590389 Msa0515360:CDS 40.0%
TTGATTTAGCCTATGCACGA+AGG + chr3_4:66590399-66590418 Msa0515360:CDS 40.0%
CAAAAAGGTCCAAGCAATTC+TGG + chr3_4:66590493-66590512 Msa0515360:CDS 40.0%
TCTTTGTGAGTCACCAGAAA+GGG - chr3_4:66590555-66590574 None:intergenic 40.0%
ATCTTTGTGAGTCACCAGAA+AGG - chr3_4:66590556-66590575 None:intergenic 40.0%
TTACTCCTACTCTTCCCTAA+TGG - chr3_4:66590733-66590752 None:intergenic 40.0%
GAGTAAAACAATGGTCGTGA+AGG + chr3_4:66590747-66590766 Msa0515360:intron 40.0%
TCCAGTAGTATATAAGGTCG+GGG + chr3_4:66590806-66590825 Msa0515360:intron 40.0%
!! ATTTGGTGCTTAACACTCCA+TGG - chr3_4:66591003-66591022 None:intergenic 40.0%
GAAAAACGGGTCAAACTTGA+AGG - chr3_4:66591125-66591144 None:intergenic 40.0%
!! TCAAGTTTGACCCGTTTTTC+CGG + chr3_4:66591125-66591144 Msa0515360:intron 40.0%
AAGGACCAAATCCGGAAAAA+CGG - chr3_4:66591139-66591158 None:intergenic 40.0%
!!! GTGCATGTTTTGAGACTGAA+AGG - chr3_4:66591174-66591193 None:intergenic 40.0%
! AAGTTCTGACTTGCAGTTAC+TGG + chr3_4:66591326-66591345 Msa0515360:intron 40.0%
AAGCTCATGGTCTTTCTTAG+GGG - chr3_4:66591417-66591436 None:intergenic 40.0%
GAAAGCTCATGGTCTTTCTT+AGG - chr3_4:66591419-66591438 None:intergenic 40.0%
CATAGGCAAAATTACACTCG+TGG - chr3_4:66591686-66591705 None:intergenic 40.0%
TGATTCACTGTCTGATTCCA+AGG + chr3_4:66591754-66591773 Msa0515360:intron 40.0%
ACTCGCAAGTTCATCTATCT+TGG - chr3_4:66591822-66591841 None:intergenic 40.0%
!! ATATGTTCAACTGGCCTTGA+TGG + chr3_4:66591886-66591905 Msa0515360:intron 40.0%
ATAGACCGGCAACAAGTATT+GGG - chr3_4:66591973-66591992 None:intergenic 40.0%
AATAGACCGGCAACAAGTAT+TGG - chr3_4:66591974-66591993 None:intergenic 40.0%
! AATACTTGTTGCCGGTCTAT+TGG + chr3_4:66591973-66591992 Msa0515360:intron 40.0%
! TTTTCAGAAGGCCAATAGAC+CGG - chr3_4:66591987-66592006 None:intergenic 40.0%
GTGAAGTTAGTAAGAAGCAG+TGG - chr3_4:66592065-66592084 None:intergenic 40.0%
AGACCATATGCTTGACCTAT+TGG - chr3_4:66592189-66592208 None:intergenic 40.0%
!! ACATATGTGGAAGGTTTTGG+CGG - chr3_4:66592276-66592295 None:intergenic 40.0%
! CTGCATTTTTGTAGTTGACC+AGG - chr3_4:66592533-66592552 None:intergenic 40.0%
CAGTAATAGATGTCTACTCC+TGG + chr3_4:66592593-66592612 Msa0515360:intron 40.0%
AAATGGGAGGAATATACGGA+AGG + chr3_4:66593291-66593310 Msa0515360:intron 40.0%
GTAGTTGAATATCCACCTTC+AGG - chr3_4:66593437-66593456 None:intergenic 40.0%
CCAATTACTATTTCACCACG+AGG - chr3_4:66593473-66593492 None:intergenic 40.0%
CCTCGTGGTGAAATAGTAAT+TGG + chr3_4:66593470-66593489 Msa0515360:CDS 40.0%
CGTGGTGAAATAGTAATTGG+TGG + chr3_4:66593473-66593492 Msa0515360:CDS 40.0%
AAATACCCAAGAGTGACACT+TGG - chr3_4:66593500-66593519 None:intergenic 40.0%
!! GCTTAAGCTTTTAGGAGAGT+TGG + chr3_4:66593703-66593722 Msa0515360:intron 40.0%
! GAGGCTTTGATATAATGCCA+AGG - chr3_4:66593730-66593749 None:intergenic 40.0%
AACTCCTGACTACTTGGTTA+TGG - chr3_4:66593752-66593771 None:intergenic 40.0%
TTCGTTTCAAAGAACAGAGG+TGG - chr3_4:66593784-66593803 None:intergenic 40.0%
TGACAGTTCTTGACGTAGAT+TGG + chr3_4:66593921-66593940 Msa0515360:intron 40.0%
GGGACACGAATAGTTTATTG+GGG + chr3_4:66594060-66594079 Msa0515360:intron 40.0%
TGACAGTTCTTGACGTAGAT+TGG + chr3_4:66593921-66593940 Msa0515360:intron 40.0%
TCAAGAGGGTCTTACAGATA+GGG - chr3_4:66594511-66594530 None:intergenic 40.0%
! GAAAAGAGTCTTATAGGGAC+AGG + chr3_4:66594672-66594691 Msa0515360:intron 40.0%
GGACAGGAAAAATTGTCAAG+AGG + chr3_4:66594688-66594707 Msa0515360:intron 40.0%
! GTGGAAATAGCTTGTACACA+AGG - chr3_4:66594906-66594925 None:intergenic 40.0%
ACTGAGCCAAAAAAAGTGGA+TGG - chr3_4:66595011-66595030 None:intergenic 40.0%
TGAGACTGAGCCAAAAAAAG+TGG - chr3_4:66595015-66595034 None:intergenic 40.0%
TTATTACGGTCTTCTTGCAC+AGG + chr3_4:66595126-66595145 Msa0515360:intron 40.0%
ATGTTGCATGGATGTAGGTA+TGG + chr3_4:66595187-66595206 Msa0515360:intron 40.0%
ATGGATGTAGGTATGGTATC+AGG + chr3_4:66595194-66595213 Msa0515360:intron 40.0%
!! TGCTGTAAAGGTTGATGAAC+GGG + chr3_4:66595887-66595906 Msa0515360:intron 40.0%
TGACGTAGGTAGATTTCATG+CGG + chr3_4:66595932-66595951 Msa0515360:CDS 40.0%
GTTGCCTTGAGATCATTGAT+AGG + chr3_4:66595958-66595977 Msa0515360:CDS 40.0%
GACATAGTTAAACTGCAGCA+TGG + chr3_4:66595987-66596006 Msa0515360:CDS 40.0%
GGACAACATTATGTTGCATG+CGG + chr3_4:66596133-66596152 Msa0515360:CDS 40.0%
TCATCCTGCATTGGATGAAT+GGG + chr3_4:66596196-66596215 Msa0515360:CDS 40.0%
TTGACTGTTAGAAAATGGGG+AGG + chr3_4:66596494-66596513 Msa0515360:intron 40.0%
GGAATACATGAAATAGGGAG+AGG - chr3_4:66596690-66596709 None:intergenic 40.0%
CAAATTCATAACGTACCTGG+AGG + chr3_4:66596754-66596773 Msa0515360:intron 40.0%
TCTTAAGAGCTGCAGTAACT+AGG - chr3_4:66597023-66597042 None:intergenic 40.0%
AGACAAAACCAAACTCGGAA+TGG + chr3_4:66597103-66597122 Msa0515360:exon 40.0%
ATGAGTAACCATTCCGAGTT+TGG - chr3_4:66597114-66597133 None:intergenic 40.0%
AAGAAGTAGCTCCTTTCACT+GGG - chr3_4:66597137-66597156 None:intergenic 40.0%
AAAGAAGTAGCTCCTTTCAC+TGG - chr3_4:66597138-66597157 None:intergenic 40.0%
AAAATACATAACCGTCCCAG+AGG - chr3_4:66597169-66597188 None:intergenic 40.0%
ACAATGAACGCCTACATTGC+CGG + chr3_4:66587478-66587497 Msa0515360:exon 45.0%
AAGTTAACGGAGATGTGACG+CGG - chr3_4:66587612-66587631 None:intergenic 45.0%
CATCTCCGTTAACTTCACTC+TGG + chr3_4:66587617-66587636 Msa0515360:CDS 45.0%
CCTTCCCAGAGTGAAGTTAA+CGG - chr3_4:66587625-66587644 None:intergenic 45.0%
!! TCAATGGGTTACGTATGGGA+AGG + chr3_4:66587789-66587808 Msa0515360:CDS 45.0%
! TGTTTGTTCAGGCTTGCTTC+CGG + chr3_4:66588025-66588044 Msa0515360:intron 45.0%
TGCGACTGAACACATAGTAC+GGG - chr3_4:66588685-66588704 None:intergenic 45.0%
TGATCGGCACAAATCTCTTG+AGG + chr3_4:66588863-66588882 Msa0515360:intron 45.0%
GATCGGCACAAATCTCTTGA+GGG + chr3_4:66588864-66588883 Msa0515360:intron 45.0%
! GATGATGACAACAAGAGCAC+AGG - chr3_4:66589329-66589348 None:intergenic 45.0%
GTGAAATCTGTACCAGACAG+AGG + chr3_4:66589397-66589416 Msa0515360:intron 45.0%
TCACAGTTGTAACCTCTGTC+TGG - chr3_4:66589412-66589431 None:intergenic 45.0%
TGGTAGAGAAAACCCTATCG+AGG + chr3_4:66589586-66589605 Msa0515360:CDS 45.0%
ACTGCAACATCAGCTGAAAG+GGG - chr3_4:66589620-66589639 None:intergenic 45.0%
CACACTACCATCTAGACTCT+AGG - chr3_4:66589766-66589785 None:intergenic 45.0%
TGTTCCTGAACTTGGGACAA+AGG + chr3_4:66589919-66589938 Msa0515360:CDS 45.0%
ACATCCTTTGTCCCAAGTTC+AGG - chr3_4:66589926-66589945 None:intergenic 45.0%
GTTGGAGGCTGTATAGGATA+CGG + chr3_4:66590117-66590136 Msa0515360:CDS 45.0%
! TGCATTGATGCCAACTGTGT+TGG + chr3_4:66590203-66590222 Msa0515360:CDS 45.0%
CGAACACGATCAAGAATTGC+TGG - chr3_4:66590237-66590256 None:intergenic 45.0%
GTGTGAGTGAATTCGTTCTC+TGG + chr3_4:66590334-66590353 Msa0515360:intron 45.0%
CGAAGGATGCAAGCGATTAA+TGG + chr3_4:66590416-66590435 Msa0515360:CDS 45.0%
TGCAAGCGATTAATGGTAGC+TGG + chr3_4:66590423-66590442 Msa0515360:CDS 45.0%
GCGATTAATGGTAGCTGGTT+TGG + chr3_4:66590428-66590447 Msa0515360:CDS 45.0%
GGGGATTGGAAAAAGCTCTA+TGG + chr3_4:66590456-66590475 Msa0515360:CDS 45.0%
CTTTGTGAGTCACCAGAAAG+GGG - chr3_4:66590554-66590573 None:intergenic 45.0%
CCAGTAGTATATAAGGTCGG+GGG + chr3_4:66590807-66590826 Msa0515360:intron 45.0%
TTTCTCATGTCACGCGCATT+TGG - chr3_4:66591020-66591039 None:intergenic 45.0%
GGTCAAACTTGAAGGACATC+AGG - chr3_4:66591117-66591136 None:intergenic 45.0%
!! TTGACCCGTTTTTCCGGATT+TGG + chr3_4:66591131-66591150 Msa0515360:intron 45.0%
AGGACCAAATCCGGAAAAAC+GGG - chr3_4:66591138-66591157 None:intergenic 45.0%
CTTGCAGTTACTGGAAGCAA+AGG + chr3_4:66591335-66591354 Msa0515360:intron 45.0%
! TCAACCCCAATACTTGTTGC+CGG + chr3_4:66591965-66591984 Msa0515360:intron 45.0%
! TAGACCGGCAACAAGTATTG+GGG - chr3_4:66591972-66591991 None:intergenic 45.0%
!! GTCGTTTTCAGTGCTCCAAT+AGG + chr3_4:66592171-66592190 Msa0515360:intron 45.0%
GCTCCAATAGGTCAAGCATA+TGG + chr3_4:66592183-66592202 Msa0515360:CDS 45.0%
AGGTCAAGCATATGGTCTCA+CGG + chr3_4:66592191-66592210 Msa0515360:CDS 45.0%
TCATGTCATGCCCAACTTCT+TGG + chr3_4:66593074-66593093 Msa0515360:intron 45.0%
TCATCAGGACTTTGTGCATG+TGG + chr3_4:66593106-66593125 Msa0515360:intron 45.0%
ACTATTTCACCACGAGGCAT+CGG - chr3_4:66593467-66593486 None:intergenic 45.0%
!! CTTTTAGGAGAGTTGGTCCT+TGG + chr3_4:66593710-66593729 Msa0515360:intron 45.0%
TCCTGACTACTTGGTTATGG+AGG - chr3_4:66593749-66593768 None:intergenic 45.0%
GGAGAAAACTCCTGACTACT+TGG - chr3_4:66593758-66593777 None:intergenic 45.0%
TTCAAAGAACAGAGGTGGTG+AGG - chr3_4:66593779-66593798 None:intergenic 45.0%
GTCCCGGTAAGATTCATGAA+TGG - chr3_4:66593873-66593892 None:intergenic 45.0%
TTCATGAATCTTACCGGGAC+AGG + chr3_4:66593873-66593892 Msa0515360:intron 45.0%
GTCAAGAGGGTCTTACAGAT+AGG - chr3_4:66594512-66594531 None:intergenic 45.0%
CAATTGCGCTTTGGTCAAGA+GGG - chr3_4:66594525-66594544 None:intergenic 45.0%
ACAATTGCGCTTTGGTCAAG+AGG - chr3_4:66594526-66594545 None:intergenic 45.0%
! GGTTTTACATATAGGGACCG+AGG + chr3_4:66594710-66594729 Msa0515360:intron 45.0%
TCACCCTAGATGAGTATCCT+AGG + chr3_4:66594793-66594812 Msa0515360:intron 45.0%
ATGCAGTGAACAGAGCATAG+TGG - chr3_4:66595038-66595057 None:intergenic 45.0%
GTAGGTATGGTATCAGGAAC+TGG + chr3_4:66595200-66595219 Msa0515360:intron 45.0%
ATTGTCATACCAGTACCACC+CGG - chr3_4:66595439-66595458 None:intergenic 45.0%
TTACACTACCAAGGGGAGTT+TGG + chr3_4:66595773-66595792 Msa0515360:intron 45.0%
!! GCTGTAAAGGTTGATGAACG+GGG + chr3_4:66595888-66595907 Msa0515360:intron 45.0%
GTAGGTAGATTTCATGCGGA+TGG + chr3_4:66595936-66595955 Msa0515360:CDS 45.0%
CATGGAGAATATGTGTCCCT+GGG + chr3_4:66596005-66596024 Msa0515360:CDS 45.0%
AGAATATGTGTCCCTGGGAA+AGG + chr3_4:66596010-66596029 Msa0515360:CDS 45.0%
AAGTTACTGTGTGGCACTTG+TGG + chr3_4:66596166-66596185 Msa0515360:CDS 45.0%
CTCATCCTGCATTGGATGAA+TGG + chr3_4:66596195-66596214 Msa0515360:CDS 45.0%
! GATGAATGGGCTTCAAAGCA+AGG + chr3_4:66596209-66596228 Msa0515360:CDS 45.0%
GTGCAGCAAAGAAGAAACAG+TGG + chr3_4:66596259-66596278 Msa0515360:CDS 45.0%
CAGCAAAGAAGAAACAGTGG+AGG + chr3_4:66596262-66596281 Msa0515360:CDS 45.0%
CAAAGAAGAAACAGTGGAGG+AGG + chr3_4:66596265-66596284 Msa0515360:CDS 45.0%
GGTGCATGCATCACTTGTAA+AGG + chr3_4:66596286-66596305 Msa0515360:CDS 45.0%
ATTCATAACGTACCTGGAGG+TGG + chr3_4:66596757-66596776 Msa0515360:intron 45.0%
TGGTTACTCATCCCAGTGAA+AGG + chr3_4:66597123-66597142 Msa0515360:three_prime_UTR 45.0%
GGTAATCTACTCAACTAGGG+TGG - chr3_4:66597205-66597224 None:intergenic 45.0%
!! TATACATAAAATATATAATT+AGG - chr3_4:66588250-66588269 None:intergenic 5.0%
!! ATTTAAAAAGATAATATATT+AGG - chr3_4:66593173-66593192 None:intergenic 5.0%
!!! TAATATATTATCTTTTTAAA+TGG + chr3_4:66593172-66593191 Msa0515360:intron 5.0%
GCAATGTAGAAAGAGTGGGG+CGG - chr3_4:66587367-66587386 None:intergenic 50.0%
GTTTGCGGTTGTTGGAGTTG+CGG - chr3_4:66587534-66587553 None:intergenic 50.0%
! CCGTTAACTTCACTCTGGGA+AGG + chr3_4:66587622-66587641 Msa0515360:CDS 50.0%
!! GCTTCTGGTTTGGCGAAGAT+TGG + chr3_4:66587835-66587854 Msa0515360:CDS 50.0%
CACATAGTACGGGTGCGATA+CGG - chr3_4:66588675-66588694 None:intergenic 50.0%
GGGGTAAATCAGCCTCGATA+GGG - chr3_4:66589601-66589620 None:intergenic 50.0%
AGGGGTAAATCAGCCTCGAT+AGG - chr3_4:66589602-66589621 None:intergenic 50.0%
! TGGAAGTACAGGCTTGCCTA+AGG + chr3_4:66589655-66589674 Msa0515360:CDS 50.0%
! CAGGGTGTGATGATGACACA+TGG + chr3_4:66589860-66589879 Msa0515360:intron 50.0%
CACAGTTGGCATCAATGCAG+TGG - chr3_4:66590202-66590221 None:intergenic 50.0%
GGTACAGCTACCAACACAGT+TGG - chr3_4:66590216-66590235 None:intergenic 50.0%
!! ATGGTAGCTGGTTTGGTGCT+TGG + chr3_4:66590435-66590454 Msa0515360:CDS 50.0%
!! TGGTAGCTGGTTTGGTGCTT+GGG + chr3_4:66590436-66590455 Msa0515360:CDS 50.0%
AAGGTCCAAGCAATTCTGGG+TGG + chr3_4:66590497-66590516 Msa0515360:CDS 50.0%
TACGACCACCCAGAATTGCT+TGG - chr3_4:66590505-66590524 None:intergenic 50.0%
CCCCCGACCTTATATACTAC+TGG - chr3_4:66590810-66590829 None:intergenic 50.0%
GCAGTAGCCTTCTCAACTCA+TGG - chr3_4:66590909-66590928 None:intergenic 50.0%
GTCTCAAAACATGCACGTCG+TGG + chr3_4:66591178-66591197 Msa0515360:intron 50.0%
CACAGTGCGGCAAAAAAGTG+TGG - chr3_4:66591441-66591460 None:intergenic 50.0%
!! TCAGGACTGGTCTCTGCTAA+AGG + chr3_4:66592026-66592045 Msa0515360:intron 50.0%
GATACTTCTGTTGGCCGTGT+AGG + chr3_4:66592249-66592268 Msa0515360:CDS 50.0%
!! AAGGTTTTGGCGGTCCTACA+CGG - chr3_4:66592266-66592285 None:intergenic 50.0%
TTGCTTTGTGGCCCTTCTCA+TGG - chr3_4:66592976-66592995 None:intergenic 50.0%
GAGAAGGGCCACAAAGCAAT+TGG + chr3_4:66592977-66592996 Msa0515360:intron 50.0%
!! CAGTTAATCGACTGGCCTGA+AGG + chr3_4:66593419-66593438 Msa0515360:intron 50.0%
!! TTAATCGACTGGCCTGAAGG+TGG + chr3_4:66593422-66593441 Msa0515360:CDS 50.0%
! GTGGTCCAAGTGTCACTCTT+GGG + chr3_4:66593492-66593511 Msa0515360:CDS 50.0%
GCCTCCATAACCAAGTAGTC+AGG + chr3_4:66593745-66593764 Msa0515360:intron 50.0%
GGTCTTACAGATAGGGAAGG+AGG - chr3_4:66594504-66594523 None:intergenic 50.0%
GAGGGTCTTACAGATAGGGA+AGG - chr3_4:66594507-66594526 None:intergenic 50.0%
!! AGGTTGATGAACGGGGAATG+AGG + chr3_4:66595895-66595914 Msa0515360:intron 50.0%
TTGATGAACGGGGAATGAGG+TGG + chr3_4:66595898-66595917 Msa0515360:CDS 50.0%
! GGAATGAGGTGGTTCTACAC+TGG + chr3_4:66595909-66595928 Msa0515360:CDS 50.0%
! TGGTTCTACACTGGTGACGT+AGG + chr3_4:66595918-66595937 Msa0515360:CDS 50.0%
GCATGGAGAATATGTGTCCC+TGG + chr3_4:66596004-66596023 Msa0515360:CDS 50.0%
GTGCATGCATACCTTTCCCA+GGG - chr3_4:66596024-66596043 None:intergenic 50.0%
! GGAAAGGTATGCATGCACGT+TGG + chr3_4:66596026-66596045 Msa0515360:intron 50.0%
! CAGGTTGAGGCAGTTCTTCT+TGG + chr3_4:66596098-66596117 Msa0515360:intron 50.0%
!! GGCTGTTTCTCATCCTGCAT+TGG + chr3_4:66596187-66596206 Msa0515360:CDS 50.0%
GAAGCCCATTCATCCAATGC+AGG - chr3_4:66596203-66596222 None:intergenic 50.0%
AACGATGAGGCCGGCAATGT+AGG - chr3_4:66587491-66587510 None:intergenic 55.0%
GGATGACGAGAGGAACGATG+AGG - chr3_4:66587504-66587523 None:intergenic 55.0%
TGTTGGAGTTGCGGAAGAGG+AGG - chr3_4:66587525-66587544 None:intergenic 55.0%
GGTTGTTGGAGTTGCGGAAG+AGG - chr3_4:66587528-66587547 None:intergenic 55.0%
TTAACGGAGATGTGACGCGG+TGG - chr3_4:66587609-66587628 None:intergenic 55.0%
GTGGAGATGTAAGCGGGTGA+TGG + chr3_4:66588362-66588381 Msa0515360:intron 55.0%
GAGCAGATGCGGCATCAGAT+GGG - chr3_4:66589523-66589542 None:intergenic 55.0%
TGAGCAGATGCGGCATCAGA+TGG - chr3_4:66589524-66589543 None:intergenic 55.0%
CCATCCATGCTGAGCAGATG+CGG - chr3_4:66589534-66589553 None:intergenic 55.0%
GCTGCTGTTGGAGGCTGTAT+AGG + chr3_4:66590111-66590130 Msa0515360:CDS 55.0%
CGCTTGCATCCTTCGTGCAT+AGG - chr3_4:66590411-66590430 None:intergenic 55.0%
!! GGTAGCTGGTTTGGTGCTTG+GGG + chr3_4:66590437-66590456 Msa0515360:CDS 55.0%
!! CTGGTTTGGTGCTTGGGGAT+TGG + chr3_4:66590442-66590461 Msa0515360:CDS 55.0%
! TCACGGAGACTTGTGCTGGT+GGG + chr3_4:66592208-66592227 Msa0515360:CDS 55.0%
! GGTGGTCCAAGTGTCACTCT+TGG + chr3_4:66593491-66593510 Msa0515360:CDS 55.0%
! AGTGAAGTGTCCACGAGCAC+CGG + chr3_4:66595417-66595436 Msa0515360:intron 55.0%
CAAGGGGAGTTTGGTAGAGC+CGG + chr3_4:66595782-66595801 Msa0515360:intron 55.0%
CGTGCATGCATACCTTTCCC+AGG - chr3_4:66596025-66596044 None:intergenic 55.0%
TCTTCTTGGCAGCCCCTTTG+TGG + chr3_4:66596112-66596131 Msa0515360:CDS 55.0%
AACGTACCTGGAGGTGGAGT+AGG + chr3_4:66596763-66596782 Msa0515360:intron 55.0%
ACGTACCTGGAGGTGGAGTA+GGG + chr3_4:66596764-66596783 Msa0515360:intron 55.0%
TACTTCCCTACTCCACCTCC+AGG - chr3_4:66596772-66596791 None:intergenic 55.0%
GGAAGCAAAGAAGGCTCGTC+TGG + chr3_4:66596936-66596955 Msa0515360:intron 55.0%
GCAGTAACTAGGCCAGTCTC+AGG - chr3_4:66597012-66597031 None:intergenic 55.0%
GACGAGAGGAACGATGAGGC+CGG - chr3_4:66587500-66587519 None:intergenic 60.0%
CGGAAGAGGAGGATGACGAG+AGG - chr3_4:66587514-66587533 None:intergenic 60.0%
TCCAACAACCGCAAACGCCG+CGG + chr3_4:66587538-66587557 Msa0515360:CDS 60.0%
GAGATGTGACGCGGTGGTTG+CGG - chr3_4:66587603-66587622 None:intergenic 60.0%
GATGCCGCATCTGCTCAGCA+TGG + chr3_4:66589527-66589546 Msa0515360:CDS 60.0%
CCGCATCTGCTCAGCATGGA+TGG + chr3_4:66589531-66589550 Msa0515360:CDS 60.0%
! TGTGGTGGTGCACCCCTTTC+TGG + chr3_4:66590539-66590558 Msa0515360:CDS 60.0%
GGTCTCACGGAGACTTGTGC+TGG + chr3_4:66592204-66592223 Msa0515360:CDS 60.0%
CTCACGGAGACTTGTGCTGG+TGG + chr3_4:66592207-66592226 Msa0515360:CDS 60.0%
! ACTGACTCACCGATGCCTCG+TGG + chr3_4:66593455-66593474 Msa0515360:CDS 60.0%
! GTGAAGTGTCCACGAGCACC+GGG + chr3_4:66595418-66595437 Msa0515360:intron 60.0%
CGGCTCTACCAAACTCCCCT+TGG - chr3_4:66595784-66595803 None:intergenic 60.0%
GACCCATGGACTCCTGAGAC+TGG + chr3_4:66596997-66597016 Msa0515360:CDS 60.0%
GGCCAGTCTCAGGAGTCCAT+GGG - chr3_4:66597002-66597021 None:intergenic 60.0%
AGGCCAGTCTCAGGAGTCCA+TGG - chr3_4:66597003-66597022 None:intergenic 60.0%
TGGTTGCGGACCGCGAAACC+AGG - chr3_4:66587589-66587608 None:intergenic 65.0%
! GGAAGGCGTGACGACACTCG+CGG + chr3_4:66587639-66587658 Msa0515360:CDS 65.0%
!! AAGTGTCCACGAGCACCGGG+TGG + chr3_4:66595421-66595440 Msa0515360:intron 65.0%
GCCGCGGCGTTTGCGGTTGT+TGG - chr3_4:66587542-66587561 None:intergenic 70.0%
CCGGTAAGCCGCGGCGTTTG+CGG - chr3_4:66587549-66587568 None:intergenic 70.0%
CCGCAAACGCCGCGGCTTAC+CGG + chr3_4:66587546-66587565 Msa0515360:CDS 70.0%
ACCAGGTTCGCCGCCGACGT+CGG - chr3_4:66587572-66587591 None:intergenic 70.0%
CGGCGGCGAACCTGGTTTCG+CGG + chr3_4:66587576-66587595 Msa0515360:CDS 70.0%
CCAGTACCACCCGGTGCTCG+TGG - chr3_4:66595430-66595449 None:intergenic 70.0%
!! CCACGAGCACCGGGTGGTAC+TGG + chr3_4:66595427-66595446 Msa0515360:intron 70.0%
CGACGTCGGCCGGTAAGCCG+CGG - chr3_4:66587558-66587577 None:intergenic 75.0%
CGCGGCTTACCGGCCGACGT+CGG + chr3_4:66587556-66587575 Msa0515360:CDS 75.0%
GGCTTACCGGCCGACGTCGG+CGG + chr3_4:66587559-66587578 Msa0515360:CDS 75.0%
! GGTTCGCCGCCGACGTCGGC+CGG - chr3_4:66587568-66587587 None:intergenic 80.0%
! GCCGACGTCGGCGGCGAACC+TGG + chr3_4:66587568-66587587 Msa0515360:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66587227 66597312 66587227 ID=Msa0515360;Name=Msa0515360
chr3_4 mRNA 66587227 66597312 66587227 ID=Msa0515360-mRNA-1;Parent=Msa0515360;Name=Msa0515360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=254|1|1|1|1|1|11|208|694
chr3_4 exon 66587227 66587924 66587227 ID=Msa0515360-mRNA-1:exon:17160;Parent=Msa0515360-mRNA-1
chr3_4 exon 66588036 66588116 66588036 ID=Msa0515360-mRNA-1:exon:17161;Parent=Msa0515360-mRNA-1
chr3_4 exon 66589413 66589676 66589413 ID=Msa0515360-mRNA-1:exon:17162;Parent=Msa0515360-mRNA-1
chr3_4 exon 66589863 66589994 66589863 ID=Msa0515360-mRNA-1:exon:17163;Parent=Msa0515360-mRNA-1
chr3_4 exon 66590102 66590275 66590102 ID=Msa0515360-mRNA-1:exon:17164;Parent=Msa0515360-mRNA-1
chr3_4 exon 66590365 66590594 66590365 ID=Msa0515360-mRNA-1:exon:17165;Parent=Msa0515360-mRNA-1
chr3_4 exon 66592182 66592299 66592182 ID=Msa0515360-mRNA-1:exon:17166;Parent=Msa0515360-mRNA-1
chr3_4 exon 66593422 66593553 66593422 ID=Msa0515360-mRNA-1:exon:17167;Parent=Msa0515360-mRNA-1
chr3_4 exon 66595897 66596031 66595897 ID=Msa0515360-mRNA-1:exon:17168;Parent=Msa0515360-mRNA-1
chr3_4 exon 66596101 66596307 66596101 ID=Msa0515360-mRNA-1:exon:17169;Parent=Msa0515360-mRNA-1
chr3_4 exon 66596937 66597312 66596937 ID=Msa0515360-mRNA-1:exon:17170;Parent=Msa0515360-mRNA-1
chr3_4 five_prime_UTR 66587227 66587480 66587227 ID=Msa0515360-mRNA-1:five_prime_utr;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66587481 66587924 66587481 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66588036 66588116 66588036 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66589413 66589676 66589413 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66589863 66589994 66589863 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66590102 66590275 66590102 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66590365 66590594 66590365 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66592182 66592299 66592182 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66593422 66593553 66593422 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66595897 66596031 66595897 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66596101 66596307 66596101 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 CDS 66596937 66597104 66596937 ID=Msa0515360-mRNA-1:cds;Parent=Msa0515360-mRNA-1
chr3_4 three_prime_UTR 66597105 66597312 66597105 ID=Msa0515360-mRNA-1:three_prime_utr;Parent=Msa0515360-mRNA-1
Gene Sequence

>Msa0515360

ATGAACGCCTACATTGCCGGCCTCATCGTTCCTCTCGTCATCCTCCTCTTCCGCAACTCCAACAACCGCAAACGCCGCGGCTTACCGGCCGACGTCGGCGGCGAACCTGGTTTCGCGGTCCGCAACCACCGCGTCACATCTCCGTTAACTTCACTCTGGGAAGGCGTGACGACACTCGCGGAGCTTTTCGAGCTAACATGCAACAAGAATCATGATAGATTGTTACTCGGAACTCGTGAATTGATCTCACGTGAAATGGAAACTTCTTCTGATGGAAGAAAGTTCGAGAAGCTTCATCTTGGAGAGTATCAATGGGTTACGTATGGGAAGGTTTTTGAATCTGTTTGCAGTTTTGCTTCTGGTTTGGCGAAGATTGGTCATGTTAGAGAAGAACGTGTTGCGATTTATGCTGACACTAGAGAAGAATGGTTTATTGCATTGCAGGCTTGCTTCCGGAGAAATGTGACTGTTGTTACCATTTATGCTTCGTTGGGAGAAGAAGCTTTGTGTCATTCATTGAATGAGACAGAGGTTACAACTGTGATTTGTGGCCGCAAAGAATTGAAATCACTTGTAAATATTGCTGGACAACTTGACACTGTGAAACGTGTGATATGTATTGAAGATGATGTCCCATCTGATGCCGCATCTGCTCAGCATGGATGGACAATCATTTCCTTTTCTGATGTTGAAAGGCTTGGTAGAGAAAACCCTATCGAGGCTGATTTACCCCTTTCAGCTGATGTTGCAGTTATAATGTACACAAGTGGAAGTACAGGCTTGCCTAAGGGTGTGATGATGACACATGGCAATATCTTAGCAACAGTGTCTGCTGTAGTGAAAATTGTTCCTGAACTTGGGACAAAGGATGTATATCTAGCATACTTACCAATGGCTCATATTCTTGAATTAATAGCTGAGAATTTGTTTGCTGCTGTTGGAGGCTGTATAGGATACGGAACTCCATTAACTCTAACCGATACATCAAACAAGGTAAAAAAGGGGACAAAAGGGGATGCCACTGCATTGATGCCAACTGTGTTGGTAGCTGTACCAGCAATTCTTGATCGTGTTCGTGATGGAGTTTTCAAGAAGGTAAATGCAAAGGGAGGATTATCAAAGGCATTGTTTGATTTAGCCTATGCACGAAGGATGCAAGCGATTAATGGTAGCTGGTTTGGTGCTTGGGGATTGGAAAAAGCTCTATGGAATTTTCTTGTCTTCAAAAAGGTCCAAGCAATTCTGGGTGGTCGTATTCGTTTTATACTATGTGGTGGTGCACCCCTTTCTGGTGACTCACAAAGATTCATCAACATTTGTCTTGGTGCTCCAATAGGTCAAGCATATGGTCTCACGGAGACTTGTGCTGGTGGGACATTTTCTGATTTTGACGATACTTCTGTTGGCCGTGTAGGACCGCCAAAACCTTCCACATATGTTAAGTTAATCGACTGGCCTGAAGGTGGATATTCAACTACTGACTCACCGATGCCTCGTGGTGAAATAGTAATTGGTGGTCCAAGTGTCACTCTTGGGTATTTCAAAAATGAAGAAAAGACAAGAGAGTCTTACAAGGTTGATGAACGGGGAATGAGGTGGTTCTACACTGGTGACGTAGGTAGATTTCATGCGGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTGCAGCATGGAGAATATGTGTCCCTGGGAAAGGTTGAGGCAGTTCTTCTTGGCAGCCCCTTTGTGGACAACATTATGTTGCATGCGGATTCTTTTCAAAGTTACTGTGTGGCACTTGTGGCTGTTTCTCATCCTGCATTGGATGAATGGGCTTCAAAGCAAGGAATTGCTTATTCTGATCTTTCAGAACTGTGCAGCAAAGAAGAAACAGTGGAGGAGGTGCATGCATCACTTGTAAAGGAAGCAAAGAAGGCTCGTCTGGAAAAATTTGAAATTCCTGCAAAACTTAAATTGCTTTCTGACCCATGGACTCCTGAGACTGGCCTAGTTACTGCAGCTCTTAAGATCAAGAGAGATGTCATTAGAAAGACTTTTCAAGAAGAGCTCTCAAAGTTATATGCCAAATAG
Protein sequence

>Msa0515360

MNAYIAGLIVPLVILLFRNSNNRKRRGLPADVGGEPGFAVRNHRVTSPLTSLWEGVTTLAELFELTCNKNHDRLLLGTRELISREMETSSDGRKFEKLHLGEYQWVTYGKVFESVCSFASGLAKIGHVREERVAIYADTREEWFIALQACFRRNVTVVTIYASLGEEALCHSLNETEVTTVICGRKELKSLVNIAGQLDTVKRVICIEDDVPSDAASAQHGWTIISFSDVERLGRENPIEADLPLSADVAVIMYTSGSTGLPKGVMMTHGNILATVSAVVKIVPELGTKDVYLAYLPMAHILELIAENLFAAVGGCIGYGTPLTLTDTSNKVKKGTKGDATALMPTVLVAVPAILDRVRDGVFKKVNAKGGLSKALFDLAYARRMQAINGSWFGAWGLEKALWNFLVFKKVQAILGGRIRFILCGGAPLSGDSQRFINICLGAPIGQAYGLTETCAGGTFSDFDDTSVGRVGPPKPSTYVKLIDWPEGGYSTTDSPMPRGEIVIGGPSVTLGYFKNEEKTRESYKVDERGMRWFYTGDVGRFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAVLLGSPFVDNIMLHADSFQSYCVALVAVSHPALDEWASKQGIAYSDLSELCSKEETVEEVHASLVKEAKKARLEKFEIPAKLKLLSDPWTPETGLVTAALKIKRDVIRKTFQEELSKLYAK*