AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047270 MtrunA17_Chr1g0165671 96.950 459 14 0 1 459 19 477 0.0 919
Msa0047270 MtrunA17_Chr1g0165681 75.705 461 110 2 1 459 1 461 0.0 726
Msa0047270 MtrunA17_Chr1g0165661 74.403 461 113 3 1 459 1 458 0.0 696
Msa0047270 MtrunA17_Chr1g0165711 73.261 460 79 4 1 459 1 417 0.0 666
Msa0047270 MtrunA17_Chr5g0433641 58.747 463 181 6 2 459 3 460 0.0 559
Msa0047270 MtrunA17_Chr7g0273791 58.681 455 179 6 2 451 3 453 0.0 555
Msa0047270 MtrunA17_Chr7g0273721 58.099 463 185 5 2 459 4 462 0.0 552
Msa0047270 MtrunA17_Chr7g0273781 57.616 453 177 7 2 446 36 481 0.0 545
Msa0047270 MtrunA17_Chr7g0273761 56.596 470 181 8 2 459 375 833 0.0 544
Msa0047270 MtrunA17_Chr7g0273761 55.449 312 127 6 146 450 32 338 1.24e-108 340
Msa0047270 MtrunA17_Chr7g0273731 57.919 442 178 5 2 438 86 524 0.0 536
Msa0047270 MtrunA17_Chr1g0191081 60.412 437 168 5 5 438 14 448 0.0 530
Msa0047270 MtrunA17_Chr6g0471381 69.434 265 79 2 197 459 6 270 8.19e-133 384
Msa0047270 MtrunA17_Chr8g0353421 91.473 129 11 0 1 129 1 129 1.02e-80 246
Msa0047270 MtrunA17_Chr1g0165741 77.551 147 33 0 1 147 1 147 1.13e-78 241
Msa0047270 MtrunA17_Chr6g0471971 51.899 237 85 6 161 391 1 214 4.31e-78 242
Msa0047270 MtrunA17_Chr3g0132001 32.944 428 268 9 9 430 14 428 1.36e-77 248
Msa0047270 MtrunA17_Chr8g0386141 35.190 395 244 7 1 390 1 388 2.89e-77 248
Msa0047270 MtrunA17_Chr6g0471371 74.667 150 38 0 1 150 1 150 9.54e-77 237
Msa0047270 MtrunA17_Chr7g0224391 33.770 382 241 7 14 389 21 396 1.70e-72 235
Msa0047270 MtrunA17_Chr6g0471891 61.421 197 50 4 230 424 1 173 2.75e-72 228
Msa0047270 MtrunA17_Chr7g0273701 57.303 178 70 4 284 459 1 174 3.41e-63 202
Msa0047270 MtrunA17_Chr7g0273741 58.904 146 60 0 2 147 3 148 5.02e-60 193
Msa0047270 MtrunA17_Chr2g0306321 30.979 439 280 14 18 438 30 463 4.35e-56 192
Msa0047270 MtrunA17_Chr4g0027071 29.091 440 287 9 16 435 19 453 2.46e-54 188
Msa0047270 MtrunA17_Chr3g0141851 32.653 392 240 10 19 397 22 402 4.92e-54 187
Msa0047270 MtrunA17_Chr1g0165721 74.359 117 30 0 343 459 1 117 1.04e-51 170
Msa0047270 MtrunA17_Chr3g0098961 55.479 146 65 0 2 147 6 151 3.05e-51 171
Msa0047270 MtrunA17_Chr4g0001861 30.787 432 267 16 16 430 10 426 1.25e-50 177
Msa0047270 MtrunA17_Chr1g0165731 70.370 108 31 1 161 267 1 108 2.38e-50 166
Msa0047270 MtrunA17_Chr2g0334001 29.040 427 278 11 17 430 11 425 1.13e-48 172
Msa0047270 MtrunA17_Chr3g0113821 30.254 433 274 11 17 434 13 432 6.37e-48 170
Msa0047270 MtrunA17_Chr8g0371821 29.263 434 276 12 15 434 9 425 4.00e-47 168
Msa0047270 MtrunA17_Chr7g0253501 28.421 475 264 18 9 432 2 451 3.05e-41 153
Msa0047270 MtrunA17_Chr7g0252731 28.713 404 242 13 1 389 11 383 7.23e-40 148
Msa0047270 MtrunA17_Chr7g0253531 27.505 469 276 17 9 432 2 451 3.29e-39 147
Msa0047270 MtrunA17_Chr6g0470591 28.851 409 255 13 56 437 63 462 4.94e-39 147
Msa0047270 MtrunA17_Chr2g0283361 28.261 414 284 10 30 434 25 434 1.21e-38 145
Msa0047270 MtrunA17_Chr4g0072041 27.394 449 281 14 17 434 22 456 4.18e-38 144
Msa0047270 MtrunA17_Chr3g0087401 26.277 411 263 10 13 390 6 409 7.60e-37 140
Msa0047270 MtrunA17_Chr7g0270771 29.293 297 173 7 5 290 1 271 7.61e-37 136
Msa0047270 MtrunA17_Chr7g0253541 27.069 447 268 19 17 422 12 441 4.39e-36 139
Msa0047270 MtrunA17_Chr4g0054081 28.112 466 289 17 1 434 1 452 4.43e-35 135
Msa0047270 MtrunA17_Chr7g0235531 26.351 444 277 14 17 432 12 433 2.25e-32 127
Msa0047270 MtrunA17_Chr3g0106691 27.074 458 282 16 16 437 63 504 3.82e-30 122
Msa0047270 MtrunA17_Chr3g0106661 26.994 489 273 18 3 437 6 464 7.16e-30 121
Msa0047270 MtrunA17_Chr2g0311401 27.483 302 198 8 142 430 2 295 1.72e-28 114
Msa0047270 MtrunA17_Chr7g0273691 54.945 91 37 2 165 252 1 90 7.60e-27 103
Msa0047270 MtrunA17_Chr3g0134071 28.409 440 250 20 6 399 4 424 8.30e-27 112
Msa0047270 MtrunA17_Chr3g0134091 29.467 319 200 12 23 327 30 337 1.78e-26 111
Msa0047270 MtrunA17_Chr3g0106721 27.273 341 220 8 16 336 17 349 2.84e-26 110
Msa0047270 MtrunA17_Chr3g0106761 26.150 413 263 14 54 437 4 403 4.00e-26 109
Msa0047270 MtrunA17_Chr4g0053081 25.616 406 258 15 46 428 49 433 4.90e-26 110
Msa0047270 MtrunA17_Chr3g0106741 26.253 419 267 13 48 437 29 434 1.17e-25 108
Msa0047270 MtrunA17_Chr8g0359251 27.689 437 248 20 23 428 30 429 3.64e-25 107
Msa0047270 MtrunA17_Chr4g0053091 24.884 430 260 14 23 428 32 422 4.19e-25 107
Msa0047270 MtrunA17_Chr5g0442701 25.815 399 236 14 61 425 63 435 4.94e-25 107
Msa0047270 MtrunA17_Chr3g0106711 33.684 190 116 5 16 197 17 204 1.27e-24 102
Msa0047270 MtrunA17_Chr5g0442691 25.245 408 227 14 61 425 86 458 1.71e-24 105
Msa0047270 MtrunA17_Chr4g0053111 25.885 452 279 18 8 428 9 435 1.81e-24 105
Msa0047270 MtrunA17_Chr4g0010361 26.606 436 259 20 23 428 25 429 2.08e-24 105
Msa0047270 MtrunA17_Chr4g0010121 26.382 398 241 14 23 395 70 440 2.11e-24 105
Msa0047270 MtrunA17_Chr3g0134041 27.543 403 223 17 36 399 44 416 2.90e-24 104
Msa0047270 MtrunA17_Chr5g0442721 26.000 400 235 15 61 425 64 437 3.50e-24 104
Msa0047270 MtrunA17_Chr3g0134121 26.292 445 275 19 24 441 31 449 7.73e-24 103
Msa0047270 MtrunA17_Chr3g0123061 23.714 447 287 17 5 435 1 409 1.15e-23 102
Msa0047270 MtrunA17_Chr8g0374911 24.887 442 260 17 24 428 52 458 1.34e-23 103
Msa0047270 MtrunA17_Chr8g0354371 24.886 438 275 15 14 428 22 428 1.41e-23 102
Msa0047270 MtrunA17_Chr3g0134061 26.185 401 245 15 36 399 42 428 1.60e-23 102
Msa0047270 MtrunA17_Chr4g0053061 24.661 442 261 17 24 428 59 465 1.69e-23 102
Msa0047270 MtrunA17_Chr7g0224131 27.103 428 263 18 23 428 25 425 4.56e-23 101
Msa0047270 MtrunA17_Chr5g0438701 23.724 392 256 14 15 386 9 377 5.01e-23 101
Msa0047270 MtrunA17_Chr3g0125001 26.744 430 271 17 23 435 25 427 6.49e-23 100
Msa0047270 MtrunA17_Chr5g0438681 24.427 393 251 14 15 386 9 376 1.10e-22 100
Msa0047270 MtrunA17_Chr8g0374641 26.757 441 250 21 23 428 30 432 1.70e-22 99.8
Msa0047270 MtrunA17_Chr3g0095731 25.935 401 223 15 64 423 65 432 3.65e-22 99.0
Msa0047270 MtrunA17_Chr3g0095721 24.752 404 221 14 64 423 72 436 4.98e-22 98.6
Msa0047270 MtrunA17_Chr3g0113181 25.445 393 238 14 53 399 55 438 5.23e-22 98.6
Msa0047270 MtrunA17_Chr3g0134111 26.977 430 236 18 17 399 21 419 8.24e-22 97.8
Msa0047270 MtrunA17_Chr4g0010331 25.000 424 274 14 23 428 25 422 2.66e-21 95.9
Msa0047270 MtrunA17_Chr4g0010311 25.000 432 270 19 23 428 25 428 2.91e-21 95.9
Msa0047270 MtrunA17_Chr8g0376891 23.769 467 286 18 15 448 9 438 5.20e-21 95.1
Msa0047270 MtrunA17_Chr5g0408911 26.250 400 247 18 24 395 35 414 1.67e-19 90.9
Msa0047270 MtrunA17_Chr8g0376901 27.358 318 180 15 15 309 9 298 2.47e-19 90.1
Msa0047270 MtrunA17_Chr4g0010351 27.707 314 198 9 23 321 25 324 3.12e-19 89.4
Msa0047270 MtrunA17_Chr4g0010381 25.450 444 252 19 23 428 25 427 7.27e-19 88.6
Msa0047270 MtrunA17_Chr7g0273681 65.306 49 17 0 91 139 1 49 1.40e-17 76.6
Msa0047270 MtrunA17_Chr4g0004691 27.607 163 112 2 19 181 14 170 1.79e-17 80.5
Msa0047270 MtrunA17_Chr8g0376911 25.325 308 200 12 15 309 9 299 2.73e-17 84.0
Msa0047270 MtrunA17_Chr7g0252771 28.226 248 162 6 192 430 7 247 7.62e-17 80.1
Msa0047270 MtrunA17_Chr6g0471981 57.812 64 25 1 100 163 1 62 8.20e-16 72.0
Msa0047270 MtrunA17_Chr5g0414431 62.264 53 15 1 54 106 5 52 7.00e-15 68.9
Msa0047270 MtrunA17_Chr8g0361781 23.877 423 253 21 15 399 9 400 1.73e-14 75.5
Msa0047270 MtrunA17_Chr7g0252761 30.323 155 104 3 5 158 12 163 4.40e-14 70.1
Msa0047270 MtrunA17_Chr2g0311411 34.307 137 84 4 17 152 11 142 3.08e-13 67.4
Msa0047270 MtrunA17_Chr6g0456591 31.818 154 93 7 51 196 57 206 6.99e-12 65.1
Msa0047270 MtrunA17_Chr4g0004701 26.768 198 117 8 253 430 45 234 9.23e-12 65.1
Msa0047270 MtrunA17_Chr3g0134131 29.012 162 111 1 228 385 122 283 1.64e-11 65.5
Msa0047270 MtrunA17_Chr3g0097841 27.564 156 95 4 249 388 47 200 8.83e-11 62.4
Msa0047270 MtrunA17_Chr1g0169471 33.613 119 67 4 80 195 2 111 9.15e-11 59.3
Msa0047270 MtrunA17_Chr2g0298091 26.174 149 107 1 45 193 47 192 9.69e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047270 AT5G17540.1 57.511 466 186 9 1 459 1 461 0.0 521
Msa0047270 AT3G03480.1 57.111 443 175 11 5 439 15 450 2.27e-168 481
Msa0047270 AT5G41040.2 31.963 438 278 9 5 434 13 438 3.40e-79 253
Msa0047270 AT5G41040.1 31.963 438 278 9 5 434 29 454 3.62e-79 253
Msa0047270 AT5G63560.1 32.957 443 271 11 1 435 1 425 3.16e-77 247
Msa0047270 AT3G48720.1 30.892 437 282 11 1 430 1 424 6.42e-72 234
Msa0047270 AT1G27620.1 29.452 438 280 11 10 435 10 430 8.83e-54 186
Msa0047270 AT3G62160.1 31.266 403 239 13 5 392 1 380 4.01e-52 181
Msa0047270 AT1G65450.1 29.386 456 286 13 1 438 12 449 1.91e-50 177
Msa0047270 AT2G40230.1 32.817 387 236 11 17 388 13 390 8.41e-49 173
Msa0047270 AT2G19070.1 28.605 430 266 13 35 434 29 447 2.89e-47 169
Msa0047270 AT5G57840.1 28.182 440 274 11 17 432 11 432 4.91e-47 168
Msa0047270 AT1G03390.1 29.630 432 280 14 19 434 32 455 1.41e-46 167
Msa0047270 AT5G48930.1 29.452 438 271 14 17 434 11 430 4.66e-46 166
Msa0047270 AT1G28680.1 28.118 441 294 13 16 439 11 445 2.88e-45 164
Msa0047270 AT1G28680.2 30.523 344 225 9 16 349 11 350 1.20e-41 152
Msa0047270 AT5G07080.1 28.298 470 273 16 1 435 6 446 4.08e-41 152
Msa0047270 AT3G47170.1 26.501 483 278 17 7 438 10 466 5.44e-41 152
Msa0047270 AT2G25150.1 28.105 459 293 16 5 439 9 454 9.51e-36 138
Msa0047270 AT2G23510.1 27.682 466 288 17 1 437 5 450 1.12e-35 137
Msa0047270 AT1G78990.1 27.723 404 254 12 62 444 65 451 9.02e-33 129
Msa0047270 AT1G31490.1 25.823 395 247 13 17 387 14 386 6.74e-30 121
Msa0047270 AT5G07860.1 27.069 447 271 15 15 435 24 441 1.44e-28 117
Msa0047270 AT5G07870.1 27.093 454 262 17 15 428 24 448 6.23e-27 113
Msa0047270 AT1G65450.3 28.283 297 184 8 158 438 2 285 9.11e-27 109
Msa0047270 AT5G42830.1 27.938 451 251 16 15 428 23 436 1.01e-26 112
Msa0047270 AT1G32910.1 26.173 405 256 15 62 439 63 451 8.05e-26 110
Msa0047270 AT5G07850.1 26.942 412 260 15 15 399 24 421 9.32e-26 109
Msa0047270 AT3G50270.1 27.119 413 233 15 23 397 30 412 5.72e-25 107
Msa0047270 AT5G67150.1 25.513 439 263 18 23 430 30 435 1.54e-23 103
Msa0047270 AT4G31910.1 26.862 443 287 13 17 430 17 451 2.47e-23 102
Msa0047270 AT3G50280.1 26.382 398 252 17 23 397 28 407 8.15e-23 100
Msa0047270 AT5G38130.1 25.628 398 253 14 23 397 48 425 2.05e-22 100
Msa0047270 AT3G50300.1 26.593 361 226 13 64 397 59 407 3.81e-22 99.0
Msa0047270 AT3G26040.1 23.485 396 260 14 15 388 9 383 4.07e-22 99.0
Msa0047270 AT1G24430.1 24.079 407 257 15 43 430 41 414 1.09e-21 97.4
Msa0047270 AT5G23970.1 24.784 464 287 17 13 456 7 428 8.75e-21 94.7
Msa0047270 AT1G24420.2 26.185 401 236 17 15 386 11 380 3.17e-20 93.2
Msa0047270 AT1G24420.1 26.185 401 236 17 15 386 11 380 3.17e-20 93.2
Msa0047270 AT5G16410.1 25.575 348 224 12 62 388 89 422 1.16e-19 91.7
Msa0047270 AT5G67160.1 25.917 409 240 15 58 435 50 426 4.26e-18 86.7
Msa0047270 AT3G30280.1 24.444 450 282 18 6 427 3 422 5.02e-17 83.6
Msa0047270 AT3G50280.2 25.641 273 185 10 138 397 10 277 6.86e-15 75.9
Msa0047270 AT5G23940.1 24.586 423 239 16 61 438 62 449 9.51e-15 76.6
Msa0047270 AT3G50290.1 26.022 269 160 8 138 382 16 269 7.98e-14 72.0
Msa0047270 AT5G47950.1 22.799 443 281 18 6 427 3 405 8.06e-13 70.5
Msa0047270 AT3G23840.1 27.136 199 120 6 80 269 81 263 1.11e-11 67.0

Find 123 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 1_1:+79980626 Msa0047270:CDS
TTCAAACAAACATTAGTTTA+AGG 0.181902 1_1:-79982899 None:intergenic
AATTATACCTTTCCTCATTA+TGG 0.183641 1_1:+79980191 Msa0047270:exon
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 1_1:-79982287 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1_1:-79980366 None:intergenic
GCATTCAGTTGCAGATTTAA+TGG 0.210614 1_1:+79982546 Msa0047270:CDS
GGTTGGGGAAAAGCTGTATA+TGG 0.227334 1_1:+79982655 Msa0047270:CDS
TTTGAGGGTCTTACAAATTC+AGG 0.246276 1_1:-79980249 None:intergenic
GGATTTGGAGATGTTGAATT+TGG 0.267773 1_1:+79982634 Msa0047270:CDS
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1_1:-79980314 None:intergenic
GCGATGGGCCATGTCATCTA+AGG 0.301591 1_1:-79982194 None:intergenic
CACCTAAGGCACTCATGAAT+TGG 0.305227 1_1:-79982033 None:intergenic
TTGAATTTCTTTGCTATGAT+TGG 0.310721 1_1:+79982917 Msa0047270:three_prime_UTR
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1_1:+79980528 Msa0047270:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 1_1:-79982865 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 1_1:+79980353 Msa0047270:CDS
TAAGGGGATAATTGTTCCTT+TGG 0.358085 1_1:-79982176 None:intergenic
GATGTGACACGTGCTGGATT+TGG 0.358389 1_1:+79982619 Msa0047270:CDS
TACAACCGCCGGGAAACTAA+TGG 0.379563 1_1:+79982456 Msa0047270:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1_1:+79982744 Msa0047270:CDS
TGGAGATGTTGAATTTGGTT+GGG 0.391848 1_1:+79982639 Msa0047270:CDS
GAATGAACCTTCAATCTTAC+CGG 0.397826 1_1:+79982072 Msa0047270:CDS
TGCAGATTTAATGGTTATCA+AGG 0.405426 1_1:+79982555 Msa0047270:CDS
AACATTAACGACCCTACTAT+TGG 0.407669 1_1:+79982838 Msa0047270:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.410344 1_1:-79982169 None:intergenic
AAATCCTCACCGCATGCCTT+TGG 0.410833 1_1:+79982296 Msa0047270:CDS
GTTGGGGAAAAGCTGTATAT+GGG 0.417458 1_1:+79982656 Msa0047270:CDS
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 1_1:-79982343 None:intergenic
GATGAGCGACGCAGCAGGTT+TGG 0.422349 1_1:+79982009 Msa0047270:CDS
GCTATTTAACTCAGTTGATA+AGG 0.428341 1_1:-79983077 None:intergenic
TTGGAGATGTTGAATTTGGT+TGG 0.432232 1_1:+79982638 Msa0047270:CDS
CCTTAGGTGAAATTTCTTGC+GGG 0.433387 1_1:+79982047 Msa0047270:CDS
AGGTCCTGCTAGGAAACTTA+TGG 0.433584 1_1:+79980461 Msa0047270:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 1_1:+79982031 Msa0047270:CDS
CCGGCGGTTGTAACCGCGAC+GGG 0.439479 1_1:-79982445 None:intergenic
AGTGCTTAACTCTCCATTGT+TGG 0.450887 1_1:+79980617 Msa0047270:CDS
CCCGTCGCGGTTACAACCGC+CGG 0.452094 1_1:+79982445 Msa0047270:CDS
GAAAGGTATAATTGAAGAAA+GGG 0.453489 1_1:-79980181 None:intergenic
GCATTACCGTAGTAACCATT+TGG 0.454482 1_1:-79982412 None:intergenic
AAACTAATGGAAAATCCGTT+GGG 0.456426 1_1:+79982469 Msa0047270:CDS
TACTTATAAAATTGTATCAC+TGG 0.463814 1_1:-79980339 None:intergenic
AAGGGTACTAAATTTGATAG+TGG 0.464191 1_1:-79980163 None:intergenic
CACTGTGAATGATAGAGGTT+GGG 0.466767 1_1:-79980214 None:intergenic
TTGAGGGTCTTACAAATTCA+GGG 0.476311 1_1:-79980248 None:intergenic
GGAAAGGTATAATTGAAGAA+AGG 0.476453 1_1:-79980182 None:intergenic
TCCATTTGCAGGTAGATTGA+AGG 0.477837 1_1:+79980437 Msa0047270:CDS
CAATCTTACCGGTATGGCAT+AGG 0.482008 1_1:+79982083 Msa0047270:CDS
TCCTTCAATCTACCTGCAAA+TGG 0.485704 1_1:-79980438 None:intergenic
TTTAATCCACCGTTACCAAA+TGG 0.496653 1_1:+79982397 Msa0047270:CDS
TGCCATACCGGTAAGATTGA+AGG 0.498825 1_1:-79982079 None:intergenic
AAGTATGATCCAAATATGGC+AGG 0.501582 1_1:+79980357 Msa0047270:CDS
CGAATTGTGGCTACCTCGGT+TGG 0.505273 1_1:-79982232 None:intergenic
AGCTCATCCAAACAAGGAAA+AGG 0.507667 1_1:-79980567 None:intergenic
CGATGAGTGCATGTTACTCT+TGG 0.517477 1_1:-79982130 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 1_1:-79982784 None:intergenic
GAAACTAATGGAAAATCCGT+TGG 0.517685 1_1:+79982468 Msa0047270:CDS
GATAATTGTTCCTTTGGTGT+CGG 0.520228 1_1:-79982170 None:intergenic
CTGCTGCGTCGCTCATCGTA+TGG 0.522839 1_1:-79982003 None:intergenic
TCACTGTGAATGATAGAGGT+TGG 0.523244 1_1:-79980215 None:intergenic
GTATCTGATGTGACACGTGC+TGG 0.527780 1_1:+79982613 Msa0047270:CDS
CTCTTCACTGTGAATGATAG+AGG 0.529506 1_1:-79980219 None:intergenic
GGAGGAGTTGGTGCTATACC+TGG 0.535378 1_1:+79982691 Msa0047270:CDS
AACCTTCAATCTTACCGGTA+TGG 0.535791 1_1:+79982077 Msa0047270:CDS
GGAGATGTTGAATTTGGTTG+GGG 0.538426 1_1:+79982640 Msa0047270:CDS
GCACCAACTCCTCCTTTAGC+TGG 0.539177 1_1:-79982682 None:intergenic
GCCTTAGGTGAAATTTCTTG+CGG 0.540414 1_1:+79982046 Msa0047270:CDS
CGAGATGAGACAGTATATGA+TGG 0.542652 1_1:-79983183 None:intergenic
CTCTTTGACGAACTTCTCCA+TGG 0.543009 1_1:-79982794 None:intergenic
TGAGTGCATGTTACTCTTGG+TGG 0.546616 1_1:-79982127 None:intergenic
CAGACATAGATGACCAAGAA+GGG 0.546800 1_1:+79980301 Msa0047270:CDS
AATCTTACCGGTATGGCATA+GGG 0.551315 1_1:+79982084 Msa0047270:CDS
CGATGGGCCATGTCATCTAA+GGG 0.551926 1_1:-79982193 None:intergenic
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 1_1:+79982777 Msa0047270:CDS
AGAAGCTCCCTATGCCATAC+CGG 0.552944 1_1:-79982091 None:intergenic
ATAGGGAGCTTCTAAACGCA+AGG 0.556473 1_1:+79982101 Msa0047270:CDS
CCGTCGCGGTTACAACCGCC+GGG 0.557301 1_1:+79982446 Msa0047270:CDS
ATAGAGGTTGGGCCATAATG+AGG 0.562250 1_1:-79980203 None:intergenic
ATTAACGACCCTACTATTGG+TGG 0.562767 1_1:+79982841 Msa0047270:CDS
AGCGCGAATTGTGGCTACCT+CGG 0.567132 1_1:-79982236 None:intergenic
GGACCAGCTAAAGGAGGAGT+TGG 0.569167 1_1:+79982679 Msa0047270:CDS
CCCGCAAGAAATTTCACCTA+AGG 0.570019 1_1:-79982047 None:intergenic
AGTATGATCCAAATATGGCA+GGG 0.572294 1_1:+79980358 Msa0047270:CDS
ACATTAGTTTAAGGTCTACA+AGG 0.572421 1_1:-79982890 None:intergenic
CCGTTACCAAATGGTTACTA+CGG 0.574521 1_1:+79982406 Msa0047270:CDS
CTCTATCATTCACAGTGAAG+AGG 0.578163 1_1:+79980220 Msa0047270:CDS
GATTGAAGGAAGGTCCTGCT+AGG 0.585694 1_1:+79980451 Msa0047270:CDS
CCCGGCGGTTGTAACCGCGA+CGG 0.586843 1_1:-79982446 None:intergenic
TTACAAGAAATAATCACGAT+GGG 0.588321 1_1:+79982961 Msa0047270:three_prime_UTR
AATACCTGAATCACCAACAA+TGG 0.589517 1_1:-79980630 None:intergenic
ATCTGTATTGTCAATGCTCG+TGG 0.590052 1_1:+79982370 Msa0047270:CDS
GCAGATTTAATGGTTATCAA+GGG 0.590389 1_1:+79982556 Msa0047270:CDS
TCCACCATAAGTTTCCTAGC+AGG 0.593970 1_1:-79980465 None:intergenic
CATACGATGAGCGACGCAGC+AGG 0.595501 1_1:+79982004 Msa0047270:CDS
TTGGGGAAAAGCTGTATATG+GGG 0.600925 1_1:+79982657 Msa0047270:CDS
AACTCTAGTGCATACCCCAA+CGG 0.601820 1_1:-79982484 None:intergenic
AAGGAAGAAACAATGAAACT+AGG 0.603955 1_1:-79982871 None:intergenic
CCGTAGTAACCATTTGGTAA+CGG 0.610295 1_1:-79982406 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 1_1:-79982709 None:intergenic
TCAGACATAGATGACCAAGA+AGG 0.615146 1_1:+79980300 Msa0047270:CDS
AATTATCCCCTTAGATGACA+TGG 0.615469 1_1:+79982186 Msa0047270:CDS
TGGGAGAAGAGCGCGAATTG+TGG 0.616656 1_1:-79982245 None:intergenic
CTTCTAACCACAGTAAAATG+TGG 0.618528 1_1:-79982583 None:intergenic
AAAAGTAGCTCATCCAAACA+AGG 0.619216 1_1:-79980573 None:intergenic
TGAGGGTCTTACAAATTCAG+GGG 0.622901 1_1:-79980247 None:intergenic
ATGGTGGATTGTAATGATGA+AGG 0.626655 1_1:+79980480 Msa0047270:CDS
CGATTGTACGACAACGCCAA+AGG 0.629387 1_1:-79982312 None:intergenic
GTTACAAGAAATAATCACGA+TGG 0.629643 1_1:+79982960 Msa0047270:three_prime_UTR
GAACAAGTTCCCGACACCAA+AGG 0.634936 1_1:+79982160 Msa0047270:CDS
TCCTGCTAGGAAACTTATGG+TGG 0.635781 1_1:+79980464 Msa0047270:CDS
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 1_1:-79982772 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.640809 1_1:-79980564 None:intergenic
GGTTGGGCCATAATGAGGAA+AGG 0.649840 1_1:-79980198 None:intergenic
TAGTAACCATTTGGTAACGG+TGG 0.653193 1_1:-79982403 None:intergenic
TAGGTAACACGTCTCAAGTG+TGG 0.654765 1_1:+79981953 Msa0047270:intron
AACGCCAAAGGCATGCGGTG+AGG 0.656317 1_1:-79982300 None:intergenic
TTTGCAGGTAGATTGAAGGA+AGG 0.658164 1_1:+79980441 Msa0047270:CDS
TAGGGAGCTTCTAAACGCAA+GGG 0.659865 1_1:+79982102 Msa0047270:CDS
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1_1:-79980603 None:intergenic
AACTAATGGAAAATCCGTTG+GGG 0.673325 1_1:+79982470 Msa0047270:CDS
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1_1:+79981956 Msa0047270:CDS
GATGGGCCATGTCATCTAAG+GGG 0.704148 1_1:-79982192 None:intergenic
TGGGGAAAAGCTGTATATGG+GGG 0.708642 1_1:+79982658 Msa0047270:CDS
ACGACAACGCCAAAGGCATG+CGG 0.713965 1_1:-79982305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATCATTTTTCATTTTTTT+TGG + chr1_1:79981223-79981242 Msa0047270:intron 10.0%
!!! TATCATTTTTCATTTTTTTT+GGG + chr1_1:79981224-79981243 Msa0047270:intron 10.0%
!!! TTTTCATCAAATAGAATATA+AGG + chr1_1:79981009-79981028 Msa0047270:intron 15.0%
!!! TTTTATGCAATTAAATAAGA+TGG - chr1_1:79981149-79981168 None:intergenic 15.0%
!! TTATTTAATTGCATAAAAAG+TGG + chr1_1:79981151-79981170 Msa0047270:intron 15.0%
!!! ATCATTTTTCATTTTTTTTG+GGG + chr1_1:79981225-79981244 Msa0047270:intron 15.0%
!! AAAAACAAAAAAAAAAAGAG+TGG + chr1_1:79981600-79981619 Msa0047270:intron 15.0%
!! AAAACAAAAAAAAAAAGAGT+GGG + chr1_1:79981601-79981620 Msa0047270:intron 15.0%
!! TACTTATAAAATTGTATCAC+TGG - chr1_1:79980342-79980361 None:intergenic 20.0%
!! TTATAAGTATGATCCAAATA+TGG + chr1_1:79980353-79980372 Msa0047270:CDS 20.0%
!!! CTTTTCTAATAATATCAACA+GGG - chr1_1:79980389-79980408 None:intergenic 20.0%
!! TATATTTCACAAATTTACAG+TGG + chr1_1:79980698-79980717 Msa0047270:intron 20.0%
!! AAATAGAGAACTTTATATCA+TGG + chr1_1:79980813-79980832 Msa0047270:intron 20.0%
!!! CTAGTAAGATTTTAGTTTAA+CGG + chr1_1:79980916-79980935 Msa0047270:intron 20.0%
!! TTTAGCAAACACAAAATAAT+TGG + chr1_1:79981061-79981080 Msa0047270:intron 20.0%
!!! TCATTTTTCATTTTTTTTGG+GGG + chr1_1:79981226-79981245 Msa0047270:intron 20.0%
!! CTTACATGTAAATTTGTAAA+TGG + chr1_1:79981252-79981271 Msa0047270:intron 20.0%
!!! TGGCACATATATTTTTTTAA+AGG + chr1_1:79981272-79981291 Msa0047270:intron 20.0%
!!! CAAGCACAAATAATTTTTTT+GGG + chr1_1:79981367-79981386 Msa0047270:intron 20.0%
!! AAAAAAATTTAATTCAGCTG+AGG + chr1_1:79981491-79981510 Msa0047270:intron 20.0%
!! TAGACAAAATTTATACATCA+CGG + chr1_1:79981773-79981792 Msa0047270:intron 20.0%
!!! TTCAAACAAACATTAGTTTA+AGG - chr1_1:79982902-79982921 None:intergenic 20.0%
!! GAAAGGTATAATTGAAGAAA+GGG - chr1_1:79980184-79980203 None:intergenic 25.0%
! AATTATACCTTTCCTCATTA+TGG + chr1_1:79980191-79980210 Msa0047270:exon 25.0%
!! GAAAGTAATTTTACTTCATG+AGG - chr1_1:79980282-79980301 None:intergenic 25.0%
!! GCTTTTCTAATAATATCAAC+AGG - chr1_1:79980390-79980409 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG + chr1_1:79980528-79980547 Msa0047270:CDS 25.0%
! ATGCAATTAAATAAGATGGT+AGG - chr1_1:79981145-79981164 None:intergenic 25.0%
!! GTTCACAAACAAAATTTTAC+AGG + chr1_1:79981344-79981363 Msa0047270:intron 25.0%
!!! GCAAGCACAAATAATTTTTT+TGG + chr1_1:79981366-79981385 Msa0047270:intron 25.0%
!! TTTAAGATCAGATACGTATT+TGG - chr1_1:79981523-79981542 None:intergenic 25.0%
! ATACCTTTCAAAAATGCTAA+AGG + chr1_1:79982730-79982749 Msa0047270:CDS 25.0%
!! TTGAATTTCTTTGCTATGAT+TGG + chr1_1:79982917-79982936 Msa0047270:three_prime_UTR 25.0%
! TTACAAGAAATAATCACGAT+GGG + chr1_1:79982961-79982980 Msa0047270:three_prime_UTR 25.0%
! AAATAGCCGTCTAAAAAAAT+TGG + chr1_1:79983093-79983112 Msa0047270:three_prime_UTR 25.0%
!!! ACTTCACCAATTTTTTTAGA+CGG - chr1_1:79983102-79983121 None:intergenic 25.0%
!! AAGGGTACTAAATTTGATAG+TGG - chr1_1:79980166-79980185 None:intergenic 30.0%
! GGAAAGGTATAATTGAAGAA+AGG - chr1_1:79980185-79980204 None:intergenic 30.0%
!! GTGTTTTATTATCCATTTGC+AGG + chr1_1:79980426-79980445 Msa0047270:CDS 30.0%
ATATAGTACAAGCATATGTC+GGG - chr1_1:79980768-79980787 None:intergenic 30.0%
CATATAGTACAAGCATATGT+CGG - chr1_1:79980769-79980788 None:intergenic 30.0%
TGAAACAATGTTTGAATCCT+AGG + chr1_1:79980964-79980983 Msa0047270:intron 30.0%
! AAGTAGACACTTTTATTCCT+AGG - chr1_1:79980984-79981003 None:intergenic 30.0%
ACAAAAAAAAAAAGAGTGGG+TGG + chr1_1:79981604-79981623 Msa0047270:intron 30.0%
CAAAAAAAAAAAGAGTGGGT+GGG + chr1_1:79981605-79981624 Msa0047270:intron 30.0%
! TTGATTGAAACGACACATTT+TGG - chr1_1:79981632-79981651 None:intergenic 30.0%
!! CTTGAATTTTGACCATTTGT+AGG + chr1_1:79981934-79981953 Msa0047270:intron 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG - chr1_1:79982276-79982295 None:intergenic 30.0%
AAACTAATGGAAAATCCGTT+GGG + chr1_1:79982469-79982488 Msa0047270:CDS 30.0%
TGCAGATTTAATGGTTATCA+AGG + chr1_1:79982555-79982574 Msa0047270:CDS 30.0%
GCAGATTTAATGGTTATCAA+GGG + chr1_1:79982556-79982575 Msa0047270:CDS 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG - chr1_1:79982736-79982755 None:intergenic 30.0%
TTTCAAAAATGCTAAAGGAG+AGG + chr1_1:79982735-79982754 Msa0047270:CDS 30.0%
! GAAACAATGAAACTAGGTTT+TGG - chr1_1:79982868-79982887 None:intergenic 30.0%
AAGGAAGAAACAATGAAACT+AGG - chr1_1:79982874-79982893 None:intergenic 30.0%
! ACATTAGTTTAAGGTCTACA+AGG - chr1_1:79982893-79982912 None:intergenic 30.0%
GTTACAAGAAATAATCACGA+TGG + chr1_1:79982960-79982979 Msa0047270:three_prime_UTR 30.0%
! GCTATTTAACTCAGTTGATA+AGG - chr1_1:79983080-79983099 None:intergenic 30.0%
TTGAGGGTCTTACAAATTCA+GGG - chr1_1:79980251-79980270 None:intergenic 35.0%
TTTGAGGGTCTTACAAATTC+AGG - chr1_1:79980252-79980271 None:intergenic 35.0%
!!! TCATGAGGTGTTTGTTTTGA+GGG - chr1_1:79980267-79980286 None:intergenic 35.0%
!!! TTCATGAGGTGTTTGTTTTG+AGG - chr1_1:79980268-79980287 None:intergenic 35.0%
TTTGAAAACGTAACCCTTCT+TGG - chr1_1:79980317-79980336 None:intergenic 35.0%
AAGTATGATCCAAATATGGC+AGG + chr1_1:79980357-79980376 Msa0047270:CDS 35.0%
AGTATGATCCAAATATGGCA+GGG + chr1_1:79980358-79980377 Msa0047270:CDS 35.0%
!! ATGGTGGATTGTAATGATGA+AGG + chr1_1:79980480-79980499 Msa0047270:CDS 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG + chr1_1:79980497-79980516 Msa0047270:CDS 35.0%
AAAAGTAGCTCATCCAAACA+AGG - chr1_1:79980576-79980595 None:intergenic 35.0%
AATACCTGAATCACCAACAA+TGG - chr1_1:79980633-79980652 None:intergenic 35.0%
AAATGATTCAAGTGAGGTCA+AGG - chr1_1:79981439-79981458 None:intergenic 35.0%
CTACACAAATGATTCAAGTG+AGG - chr1_1:79981445-79981464 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG + chr1_1:79981443-79981462 Msa0047270:intron 35.0%
AAGATCAGATACGTATTTGG+TGG - chr1_1:79981520-79981539 None:intergenic 35.0%
! TCTTTGTTTCCTAGAAAGAG+TGG + chr1_1:79981565-79981584 Msa0047270:intron 35.0%
! CTTTGTTTCCTAGAAAGAGT+GGG + chr1_1:79981566-79981585 Msa0047270:intron 35.0%
AGACACACACTAGAGTTAAA+AGG - chr1_1:79981671-79981690 None:intergenic 35.0%
!! CACAACAAGTGTTTGATTTG+TGG + chr1_1:79981858-79981877 Msa0047270:intron 35.0%
GAATGAACCTTCAATCTTAC+CGG + chr1_1:79982072-79982091 Msa0047270:CDS 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG - chr1_1:79982172-79982191 None:intergenic 35.0%
! GATAATTGTTCCTTTGGTGT+CGG - chr1_1:79982173-79982192 None:intergenic 35.0%
TAAGGGGATAATTGTTCCTT+TGG - chr1_1:79982179-79982198 None:intergenic 35.0%
AATTATCCCCTTAGATGACA+TGG + chr1_1:79982186-79982205 Msa0047270:CDS 35.0%
!!! ATTGTTTTTGTTGGTGAGGT+GGG - chr1_1:79982267-79982286 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG - chr1_1:79982271-79982290 None:intergenic 35.0%
TTTAATCCACCGTTACCAAA+TGG + chr1_1:79982397-79982416 Msa0047270:CDS 35.0%
GAAACTAATGGAAAATCCGT+TGG + chr1_1:79982468-79982487 Msa0047270:CDS 35.0%
AACTAATGGAAAATCCGTTG+GGG + chr1_1:79982470-79982489 Msa0047270:CDS 35.0%
GCATTCAGTTGCAGATTTAA+TGG + chr1_1:79982546-79982565 Msa0047270:CDS 35.0%
CTTCTAACCACAGTAAAATG+TGG - chr1_1:79982586-79982605 None:intergenic 35.0%
GGATTTGGAGATGTTGAATT+TGG + chr1_1:79982634-79982653 Msa0047270:CDS 35.0%
TTGGAGATGTTGAATTTGGT+TGG + chr1_1:79982638-79982657 Msa0047270:CDS 35.0%
TGGAGATGTTGAATTTGGTT+GGG + chr1_1:79982639-79982658 Msa0047270:CDS 35.0%
ATATAAAAGCTAGCAACACC+AGG - chr1_1:79982712-79982731 None:intergenic 35.0%
AAAAATGCTAAAGGAGAGGA+AGG + chr1_1:79982739-79982758 Msa0047270:CDS 35.0%
AACATTAACGACCCTACTAT+TGG + chr1_1:79982838-79982857 Msa0047270:CDS 35.0%
CACTGTGAATGATAGAGGTT+GGG - chr1_1:79980217-79980236 None:intergenic 40.0%
TCACTGTGAATGATAGAGGT+TGG - chr1_1:79980218-79980237 None:intergenic 40.0%
CTCTTCACTGTGAATGATAG+AGG - chr1_1:79980222-79980241 None:intergenic 40.0%
CTCTATCATTCACAGTGAAG+AGG + chr1_1:79980220-79980239 Msa0047270:CDS 40.0%
TGAGGGTCTTACAAATTCAG+GGG - chr1_1:79980250-79980269 None:intergenic 40.0%
TCAGACATAGATGACCAAGA+AGG + chr1_1:79980300-79980319 Msa0047270:CDS 40.0%
CAGACATAGATGACCAAGAA+GGG + chr1_1:79980301-79980320 Msa0047270:CDS 40.0%
TCCATTTGCAGGTAGATTGA+AGG + chr1_1:79980437-79980456 Msa0047270:CDS 40.0%
TCCTTCAATCTACCTGCAAA+TGG - chr1_1:79980441-79980460 None:intergenic 40.0%
TTTGCAGGTAGATTGAAGGA+AGG + chr1_1:79980441-79980460 Msa0047270:CDS 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG + chr1_1:79980560-79980579 Msa0047270:CDS 40.0%
TCATCCAAACAAGGAAAAGG+AGG - chr1_1:79980567-79980586 None:intergenic 40.0%
AGCTCATCCAAACAAGGAAA+AGG - chr1_1:79980570-79980589 None:intergenic 40.0%
!!! GAGCTACTTTTTGATGTTCC+TGG + chr1_1:79980585-79980604 Msa0047270:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG - chr1_1:79980606-79980625 None:intergenic 40.0%
AGTGCTTAACTCTCCATTGT+TGG + chr1_1:79980617-79980636 Msa0047270:CDS 40.0%
! ATATGTCGGGAGTGTATGTT+CGG - chr1_1:79980755-79980774 None:intergenic 40.0%
ACAAATCACCCACTCTTTCT+AGG - chr1_1:79981577-79981596 None:intergenic 40.0%
TCACGGATCAAGCTATTACA+TGG + chr1_1:79981790-79981809 Msa0047270:intron 40.0%
GGATCAAGCTATTACATGGT+TGG + chr1_1:79981794-79981813 Msa0047270:intron 40.0%
TGAGACGTGTTACCTACAAA+TGG - chr1_1:79981949-79981968 None:intergenic 40.0%
GCCTTAGGTGAAATTTCTTG+CGG + chr1_1:79982046-79982065 Msa0047270:CDS 40.0%
CCTTAGGTGAAATTTCTTGC+GGG + chr1_1:79982047-79982066 Msa0047270:CDS 40.0%
AACCTTCAATCTTACCGGTA+TGG + chr1_1:79982077-79982096 Msa0047270:CDS 40.0%
AATCTTACCGGTATGGCATA+GGG + chr1_1:79982084-79982103 Msa0047270:CDS 40.0%
ACCGAAGAAAAAAGAGCGAT+GGG - chr1_1:79982212-79982231 None:intergenic 40.0%
!!! GATTGTTTTTGTTGGTGAGG+TGG - chr1_1:79982268-79982287 None:intergenic 40.0%
ATCTGTATTGTCAATGCTCG+TGG + chr1_1:79982370-79982389 Msa0047270:CDS 40.0%
!! TAGTAACCATTTGGTAACGG+TGG - chr1_1:79982406-79982425 None:intergenic 40.0%
CCGTAGTAACCATTTGGTAA+CGG - chr1_1:79982409-79982428 None:intergenic 40.0%
CCGTTACCAAATGGTTACTA+CGG + chr1_1:79982406-79982425 Msa0047270:CDS 40.0%
GCATTACCGTAGTAACCATT+TGG - chr1_1:79982415-79982434 None:intergenic 40.0%
!! ATTTTCCATTAGTTTCCCGG+CGG - chr1_1:79982464-79982483 None:intergenic 40.0%
!! CGGATTTTCCATTAGTTTCC+CGG - chr1_1:79982467-79982486 None:intergenic 40.0%
GGAGATGTTGAATTTGGTTG+GGG + chr1_1:79982640-79982659 Msa0047270:CDS 40.0%
GTTGGGGAAAAGCTGTATAT+GGG + chr1_1:79982656-79982675 Msa0047270:CDS 40.0%
TTGGGGAAAAGCTGTATATG+GGG + chr1_1:79982657-79982676 Msa0047270:CDS 40.0%
ATTAACGACCCTACTATTGG+TGG + chr1_1:79982841-79982860 Msa0047270:CDS 40.0%
!! GTTTTGGACCACCAATAGTA+GGG - chr1_1:79982852-79982871 None:intergenic 40.0%
CGAGATGAGACAGTATATGA+TGG - chr1_1:79983186-79983205 None:intergenic 40.0%
ATAGAGGTTGGGCCATAATG+AGG - chr1_1:79980206-79980225 None:intergenic 45.0%
AGGTCCTGCTAGGAAACTTA+TGG + chr1_1:79980461-79980480 Msa0047270:CDS 45.0%
TCCTGCTAGGAAACTTATGG+TGG + chr1_1:79980464-79980483 Msa0047270:CDS 45.0%
TCCACCATAAGTTTCCTAGC+AGG - chr1_1:79980468-79980487 None:intergenic 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG + chr1_1:79980626-79980645 Msa0047270:CDS 45.0%
GGAGTGTATGTTCGGATTTG+CGG - chr1_1:79980747-79980766 None:intergenic 45.0%
TAGGTAACACGTCTCAAGTG+TGG + chr1_1:79981953-79981972 Msa0047270:intron 45.0%
GTCCAATTCATGAGTGCCTT+AGG + chr1_1:79982031-79982050 Msa0047270:CDS 45.0%
! CACCTAAGGCACTCATGAAT+TGG - chr1_1:79982036-79982055 None:intergenic 45.0%
CCCGCAAGAAATTTCACCTA+AGG - chr1_1:79982050-79982069 None:intergenic 45.0%
TGCCATACCGGTAAGATTGA+AGG - chr1_1:79982082-79982101 None:intergenic 45.0%
CAATCTTACCGGTATGGCAT+AGG + chr1_1:79982083-79982102 Msa0047270:CDS 45.0%
ATAGGGAGCTTCTAAACGCA+AGG + chr1_1:79982101-79982120 Msa0047270:CDS 45.0%
TAGGGAGCTTCTAAACGCAA+GGG + chr1_1:79982102-79982121 Msa0047270:CDS 45.0%
TGAGTGCATGTTACTCTTGG+TGG - chr1_1:79982130-79982149 None:intergenic 45.0%
CGATGAGTGCATGTTACTCT+TGG - chr1_1:79982133-79982152 None:intergenic 45.0%
!!! GCCCATCGCTCTTTTTTCTT+CGG + chr1_1:79982208-79982227 Msa0047270:CDS 45.0%
GACCGAAGAAAAAAGAGCGA+TGG - chr1_1:79982213-79982232 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG + chr1_1:79982219-79982238 Msa0047270:CDS 45.0%
TGCGGTGAGGATTTCGAAAT+TGG - chr1_1:79982290-79982309 None:intergenic 45.0%
AACTCTAGTGCATACCCCAA+CGG - chr1_1:79982487-79982506 None:intergenic 45.0%
! GGGTAGACCACATTTTACTG+TGG + chr1_1:79982576-79982595 Msa0047270:CDS 45.0%
GGTTGGGGAAAAGCTGTATA+TGG + chr1_1:79982655-79982674 Msa0047270:CDS 45.0%
TGGGGAAAAGCTGTATATGG+GGG + chr1_1:79982658-79982677 Msa0047270:CDS 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG + chr1_1:79982744-79982763 Msa0047270:CDS 45.0%
GCTTGAGCTGGTAAACAAAG+TGG - chr1_1:79982775-79982794 None:intergenic 45.0%
TTGTTTACCAGCTCAAGCCA+TGG + chr1_1:79982777-79982796 Msa0047270:CDS 45.0%
CTCTTTGACGAACTTCTCCA+TGG - chr1_1:79982797-79982816 None:intergenic 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG - chr1_1:79982853-79982872 None:intergenic 45.0%
!!! ATTATTTTATGTTATTATTT+TGG - chr1_1:79981038-79981057 None:intergenic 5.0%
!! ATAAATTAATTAGTTAAAAT+TGG - chr1_1:79981885-79981904 None:intergenic 5.0%
GGTTGGGCCATAATGAGGAA+AGG - chr1_1:79980201-79980220 None:intergenic 50.0%
GGGTCTTTCCCTGCCATATT+TGG - chr1_1:79980369-79980388 None:intergenic 50.0%
GATTGAAGGAAGGTCCTGCT+AGG + chr1_1:79980451-79980470 Msa0047270:CDS 50.0%
GTAACACGTCTCAAGTGTGG+TGG + chr1_1:79981956-79981975 Msa0047270:CDS 50.0%
AGAAGCTCCCTATGCCATAC+CGG - chr1_1:79982094-79982113 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG + chr1_1:79982160-79982179 Msa0047270:CDS 50.0%
GATGGGCCATGTCATCTAAG+GGG - chr1_1:79982195-79982214 None:intergenic 50.0%
CGATGGGCCATGTCATCTAA+GGG - chr1_1:79982196-79982215 None:intergenic 50.0%
AAATCCTCACCGCATGCCTT+TGG + chr1_1:79982296-79982315 Msa0047270:CDS 50.0%
CGATTGTACGACAACGCCAA+AGG - chr1_1:79982315-79982334 None:intergenic 50.0%
CGAACTTCTTCGTCAGTGTC+TGG - chr1_1:79982346-79982365 None:intergenic 50.0%
! TGCTTTTGCATTTCCCGTCG+CGG + chr1_1:79982432-79982451 Msa0047270:CDS 50.0%
TACAACCGCCGGGAAACTAA+TGG + chr1_1:79982456-79982475 Msa0047270:CDS 50.0%
GTATCTGATGTGACACGTGC+TGG + chr1_1:79982613-79982632 Msa0047270:CDS 50.0%
GATGTGACACGTGCTGGATT+TGG + chr1_1:79982619-79982638 Msa0047270:CDS 50.0%
GTATATGGGGGACCAGCTAA+AGG + chr1_1:79982670-79982689 Msa0047270:CDS 50.0%
AACTTCTCCATGGCTTGAGC+TGG - chr1_1:79982787-79982806 None:intergenic 50.0%
GCGATGGGCCATGTCATCTA+AGG - chr1_1:79982197-79982216 None:intergenic 55.0%
CGAATTGTGGCTACCTCGGT+TGG - chr1_1:79982235-79982254 None:intergenic 55.0%
AGCGCGAATTGTGGCTACCT+CGG - chr1_1:79982239-79982258 None:intergenic 55.0%
! TGGGAGAAGAGCGCGAATTG+TGG - chr1_1:79982248-79982267 None:intergenic 55.0%
! ACGACAACGCCAAAGGCATG+CGG - chr1_1:79982308-79982327 None:intergenic 55.0%
TATGGGGGACCAGCTAAAGG+AGG + chr1_1:79982673-79982692 Msa0047270:CDS 55.0%
GGACCAGCTAAAGGAGGAGT+TGG + chr1_1:79982679-79982698 Msa0047270:CDS 55.0%
GCACCAACTCCTCCTTTAGC+TGG - chr1_1:79982685-79982704 None:intergenic 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG + chr1_1:79982691-79982710 Msa0047270:CDS 55.0%
CTGCTGCGTCGCTCATCGTA+TGG - chr1_1:79982006-79982025 None:intergenic 60.0%
CATACGATGAGCGACGCAGC+AGG + chr1_1:79982004-79982023 Msa0047270:CDS 60.0%
GATGAGCGACGCAGCAGGTT+TGG + chr1_1:79982009-79982028 Msa0047270:CDS 60.0%
! AACGCCAAAGGCATGCGGTG+AGG - chr1_1:79982303-79982322 None:intergenic 60.0%
CCGGCGGTTGTAACCGCGAC+GGG - chr1_1:79982448-79982467 None:intergenic 70.0%
CCCGTCGCGGTTACAACCGC+CGG + chr1_1:79982445-79982464 Msa0047270:CDS 70.0%
CCCGGCGGTTGTAACCGCGA+CGG - chr1_1:79982449-79982468 None:intergenic 70.0%
CCGTCGCGGTTACAACCGCC+GGG + chr1_1:79982446-79982465 Msa0047270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79980156 79983243 79980156 ID=Msa0047270;Name=Msa0047270
chr1_1 mRNA 79980156 79983243 79980156 ID=Msa0047270-mRNA-1;Parent=Msa0047270;Name=Msa0047270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=54|1|1|1|1|1|2|346|459
chr1_1 exon 79980156 79980647 79980156 ID=Msa0047270-mRNA-1:exon:27574;Parent=Msa0047270-mRNA-1
chr1_1 exon 79981956 79983243 79981956 ID=Msa0047270-mRNA-1:exon:27575;Parent=Msa0047270-mRNA-1
chr1_1 five_prime_UTR 79980156 79980209 79980156 ID=Msa0047270-mRNA-1:five_prime_utr;Parent=Msa0047270-mRNA-1
chr1_1 CDS 79980210 79980647 79980210 ID=Msa0047270-mRNA-1:cds;Parent=Msa0047270-mRNA-1
chr1_1 CDS 79981956 79982897 79981956 ID=Msa0047270-mRNA-1:cds;Parent=Msa0047270-mRNA-1
chr1_1 three_prime_UTR 79982898 79983243 79982898 ID=Msa0047270-mRNA-1:three_prime_utr;Parent=Msa0047270-mRNA-1
Gene Sequence

>Msa0047270

ATGGCCCAACCTCTATCATTCACAGTGAAGAGGCATGCCCCTGAATTTGTAAGACCCTCAAAACAAACACCTCATGAAGTAAAATTACTTTCAGACATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCGAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGATTGAAGGAAGGTCCTGCTAGGAAACTTATGGTGGATTGTAATGATGAAGGTGTTTTGTTCATTGAGGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTACTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTTCGTCTAAACCATACGATGAGCGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGGATGAATGAACCTTCAATCTTACCGGTATGGCATAGGGAGCTTCTAAACGCAAGGGATCCACCAAGAGTAACATGCACTCATCGTGAATATGAACAAGTTCCCGACACCAAAGGAACAATTATCCCCTTAGATGACATGGCCCATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCCACAATTCGCGCTCTTCTCCCACCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCGTTACAACCAGACACTGACGAAGAAGTTCGCATAATCTGTATTGTCAATGCTCGTGGCAAGTTTAATCCACCGTTACCAAATGGTTACTACGGTAATGCTTTTGCATTTCCCGTCGCGGTTACAACCGCCGGGAAACTAATGGAAAATCCGTTGGGGTATGCACTAGAGTTAGTTAAAAAAGCAAAATCTGATGTAACTCAAGAATACATGCATTCAGTTGCAGATTTAATGGTTATCAAGGGTAGACCACATTTTACTGTGGTTAGAAGTTATCTTGTATCTGATGTGACACGTGCTGGATTTGGAGATGTTGAATTTGGTTGGGGAAAAGCTGTATATGGGGGACCAGCTAAAGGAGGAGTTGGTGCTATACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTACCAGCTCAAGCCATGGAGAAGTTCGTCAAAGAGTTAGATAGTGTGCTTAAGAACAACATTAACGACCCTACTATTGGTGGTCCAAAACCTAGTTTCATTGTTTCTTCCTTGTAG
Protein sequence

>Msa0047270

MAQPLSFTVKRHAPEFVRPSKQTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLKEGPARKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMSALGEISCGMNEPSILPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVATIRALLPPHQQKQSNFEILTACLWRCRTIALQPDTDEEVRIICIVNARGKFNPPLPNGYYGNAFAFPVAVTTAGKLMENPLGYALELVKKAKSDVTQEYMHSVADLMVIKGRPHFTVVRSYLVSDVTRAGFGDVEFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPLCLPAQAMEKFVKELDSVLKNNINDPTIGGPKPSFIVSSL*