AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307090 MtrunA17_Chr1g0165671 96.646 477 16 0 15 491 1 477 0.0 951
Msa0307090 MtrunA17_Chr1g0165681 76.356 461 107 2 33 491 1 461 0.0 732
Msa0307090 MtrunA17_Chr1g0165661 74.403 461 113 3 33 491 1 458 0.0 699
Msa0307090 MtrunA17_Chr1g0165711 73.913 460 76 4 33 491 1 417 0.0 674
Msa0307090 MtrunA17_Chr5g0433641 59.130 460 178 6 37 491 6 460 0.0 557
Msa0307090 MtrunA17_Chr7g0273781 56.394 477 192 8 11 478 12 481 0.0 553
Msa0307090 MtrunA17_Chr7g0273791 59.202 451 175 6 37 482 6 452 0.0 553
Msa0307090 MtrunA17_Chr7g0273721 58.478 460 182 5 37 491 7 462 0.0 550
Msa0307090 MtrunA17_Chr7g0273761 55.918 490 197 10 14 491 351 833 0.0 545
Msa0307090 MtrunA17_Chr7g0273761 55.449 312 127 6 178 482 32 338 1.85e-108 341
Msa0307090 MtrunA17_Chr7g0273731 55.021 478 199 7 6 470 50 524 0.0 537
Msa0307090 MtrunA17_Chr1g0191081 60.502 438 168 5 36 470 13 448 0.0 534
Msa0307090 MtrunA17_Chr6g0471381 69.811 265 78 2 229 491 6 270 6.89e-133 385
Msa0307090 MtrunA17_Chr8g0353421 91.473 129 11 0 33 161 1 129 1.30e-79 244
Msa0307090 MtrunA17_Chr1g0165741 78.912 147 31 0 33 179 1 147 2.02e-79 244
Msa0307090 MtrunA17_Chr3g0132001 33.178 428 267 9 41 462 14 428 3.43e-78 251
Msa0307090 MtrunA17_Chr8g0386141 32.739 449 284 9 33 476 1 436 1.19e-77 249
Msa0307090 MtrunA17_Chr6g0471371 76.000 150 36 0 33 182 1 150 1.34e-77 240
Msa0307090 MtrunA17_Chr6g0471971 51.477 237 86 6 193 423 1 214 9.82e-77 239
Msa0307090 MtrunA17_Chr7g0224391 34.031 382 240 7 46 421 21 396 2.13e-73 238
Msa0307090 MtrunA17_Chr6g0471891 60.914 197 51 4 262 456 1 173 1.59e-71 227
Msa0307090 MtrunA17_Chr7g0273701 57.303 178 70 4 316 491 1 174 3.54e-63 203
Msa0307090 MtrunA17_Chr7g0273741 58.108 148 62 0 32 179 1 148 3.74e-59 192
Msa0307090 MtrunA17_Chr2g0306321 31.973 441 278 14 49 470 26 463 7.28e-59 201
Msa0307090 MtrunA17_Chr4g0027071 29.801 453 293 10 35 467 6 453 1.28e-57 197
Msa0307090 MtrunA17_Chr3g0141851 33.676 389 234 10 51 426 22 399 6.44e-56 193
Msa0307090 MtrunA17_Chr4g0001861 31.481 432 264 16 48 462 10 426 8.94e-53 184
Msa0307090 MtrunA17_Chr3g0098961 56.376 149 65 0 31 179 3 151 1.33e-52 176
Msa0307090 MtrunA17_Chr1g0165721 75.214 117 29 0 375 491 1 117 1.71e-52 173
Msa0307090 MtrunA17_Chr2g0334001 29.742 427 275 11 49 462 11 425 7.08e-51 179
Msa0307090 MtrunA17_Chr1g0165731 70.370 108 31 1 193 299 1 108 1.41e-50 168
Msa0307090 MtrunA17_Chr3g0113821 30.485 433 273 11 49 466 13 432 1.05e-48 173
Msa0307090 MtrunA17_Chr8g0371821 29.724 434 274 12 47 466 9 425 1.84e-48 172
Msa0307090 MtrunA17_Chr6g0470591 29.340 409 253 13 88 469 63 462 2.03e-41 154
Msa0307090 MtrunA17_Chr2g0283361 28.986 414 281 10 62 466 25 434 2.96e-41 153
Msa0307090 MtrunA17_Chr7g0253501 28.632 475 263 17 41 464 2 451 1.62e-40 151
Msa0307090 MtrunA17_Chr7g0252731 28.218 404 244 13 33 421 11 383 3.01e-39 147
Msa0307090 MtrunA17_Chr7g0253531 27.719 469 275 16 41 464 2 451 1.26e-38 146
Msa0307090 MtrunA17_Chr7g0270771 29.293 297 173 7 37 322 1 271 6.39e-38 139
Msa0307090 MtrunA17_Chr4g0072041 27.617 449 280 14 49 466 22 456 1.12e-37 144
Msa0307090 MtrunA17_Chr7g0253541 27.069 447 268 18 49 454 12 441 1.81e-36 140
Msa0307090 MtrunA17_Chr4g0054081 28.172 465 290 16 33 466 1 452 5.77e-36 139
Msa0307090 MtrunA17_Chr3g0087401 26.034 411 264 10 45 422 6 409 1.31e-35 137
Msa0307090 MtrunA17_Chr3g0106691 27.511 458 280 15 48 469 63 504 2.44e-33 132
Msa0307090 MtrunA17_Chr7g0235531 26.471 442 275 14 51 464 14 433 2.00e-32 128
Msa0307090 MtrunA17_Chr3g0106661 27.731 476 262 17 48 469 17 464 3.31e-32 128
Msa0307090 MtrunA17_Chr2g0311401 27.815 302 197 8 174 462 2 295 4.42e-29 116
Msa0307090 MtrunA17_Chr3g0106721 27.566 341 219 8 48 368 17 349 1.80e-28 117
Msa0307090 MtrunA17_Chr3g0106761 26.634 413 261 14 86 469 4 403 3.43e-28 116
Msa0307090 MtrunA17_Chr3g0106741 27.763 389 239 13 110 469 59 434 1.38e-27 114
Msa0307090 MtrunA17_Chr4g0053081 25.862 406 257 15 78 460 49 433 2.16e-27 114
Msa0307090 MtrunA17_Chr7g0273691 54.945 91 37 2 197 284 1 90 1.52e-26 103
Msa0307090 MtrunA17_Chr4g0053061 24.532 481 316 18 5 460 7 465 1.56e-26 112
Msa0307090 MtrunA17_Chr3g0106711 34.211 190 115 4 48 229 17 204 2.80e-26 107
Msa0307090 MtrunA17_Chr3g0134071 28.211 436 256 19 38 431 4 424 1.64e-25 109
Msa0307090 MtrunA17_Chr4g0053111 26.106 452 278 18 40 460 9 435 2.37e-25 108
Msa0307090 MtrunA17_Chr5g0442701 26.065 399 235 14 93 457 63 435 4.59e-25 107
Msa0307090 MtrunA17_Chr4g0010121 26.633 398 240 14 55 427 70 440 5.29e-25 107
Msa0307090 MtrunA17_Chr4g0010361 26.606 436 259 20 55 460 25 429 5.59e-25 107
Msa0307090 MtrunA17_Chr3g0134091 29.154 319 201 12 55 359 30 337 7.73e-25 107
Msa0307090 MtrunA17_Chr5g0442691 25.490 408 226 14 93 457 86 458 7.84e-25 107
Msa0307090 MtrunA17_Chr8g0359251 26.773 437 252 19 55 460 30 429 1.71e-24 105
Msa0307090 MtrunA17_Chr5g0442721 26.250 400 234 15 93 457 64 437 2.39e-24 105
Msa0307090 MtrunA17_Chr8g0374911 24.887 442 260 18 56 460 52 458 3.50e-24 105
Msa0307090 MtrunA17_Chr4g0053091 24.651 430 261 14 55 460 32 422 6.60e-24 103
Msa0307090 MtrunA17_Chr7g0224131 27.570 428 261 19 55 460 25 425 7.81e-24 103
Msa0307090 MtrunA17_Chr3g0134041 27.295 403 224 17 68 431 44 416 2.94e-23 102
Msa0307090 MtrunA17_Chr3g0125001 27.378 431 267 18 55 467 25 427 4.88e-23 101
Msa0307090 MtrunA17_Chr5g0438701 23.724 392 256 14 47 418 9 377 5.23e-23 101
Msa0307090 MtrunA17_Chr8g0354371 24.654 434 281 15 46 460 22 428 5.84e-23 101
Msa0307090 MtrunA17_Chr8g0374641 26.984 441 249 21 55 460 30 432 6.40e-23 101
Msa0307090 MtrunA17_Chr3g0134061 26.368 402 243 16 68 431 42 428 1.37e-22 100
Msa0307090 MtrunA17_Chr3g0134121 26.067 445 276 19 56 473 31 449 1.56e-22 100
Msa0307090 MtrunA17_Chr5g0438681 24.427 393 251 14 47 418 9 376 2.05e-22 99.8
Msa0307090 MtrunA17_Chr3g0095721 25.432 405 217 14 96 455 72 436 2.59e-22 99.8
Msa0307090 MtrunA17_Chr4g0010331 25.472 424 272 15 55 460 25 422 2.82e-22 99.4
Msa0307090 MtrunA17_Chr4g0010311 25.349 430 271 18 55 460 25 428 4.45e-22 98.6
Msa0307090 MtrunA17_Chr3g0134111 25.738 474 262 20 49 475 21 451 1.34e-20 94.4
Msa0307090 MtrunA17_Chr8g0376891 22.993 461 297 15 47 480 9 438 4.59e-20 92.8
Msa0307090 MtrunA17_Chr4g0010351 28.344 314 196 10 55 353 25 324 1.06e-19 90.9
Msa0307090 MtrunA17_Chr5g0408911 25.564 399 251 15 56 427 35 414 3.28e-19 90.1
Msa0307090 MtrunA17_Chr8g0376901 25.191 393 255 16 47 418 9 383 1.04e-18 88.6
Msa0307090 MtrunA17_Chr7g0273681 65.306 49 17 0 123 171 1 49 1.36e-17 76.6
Msa0307090 MtrunA17_Chr4g0004691 28.221 163 111 2 51 213 14 170 1.72e-17 80.5
Msa0307090 MtrunA17_Chr8g0376911 22.983 409 243 16 47 418 9 382 9.33e-17 82.4
Msa0307090 MtrunA17_Chr7g0252771 27.490 251 166 6 221 462 4 247 1.07e-16 80.1
Msa0307090 MtrunA17_Chr6g0471981 57.812 64 25 1 132 195 1 62 8.38e-16 72.0
Msa0307090 MtrunA17_Chr2g0311411 35.766 137 82 4 49 184 11 142 1.01e-14 71.6
Msa0307090 MtrunA17_Chr5g0414431 62.264 53 15 1 86 138 5 52 1.17e-14 68.2
Msa0307090 MtrunA17_Chr7g0252761 29.677 155 105 3 37 190 12 163 6.44e-14 69.7
Msa0307090 MtrunA17_Chr4g0004701 27.273 198 116 8 285 462 45 234 2.60e-12 66.6
Msa0307090 MtrunA17_Chr1g0169471 35.052 97 55 2 119 214 11 100 4.34e-12 63.2
Msa0307090 MtrunA17_Chr5g0438721 32.000 125 68 5 96 214 9 122 1.01e-11 62.8
Msa0307090 MtrunA17_Chr3g0097841 28.205 156 94 4 281 420 47 200 2.32e-11 64.3
Msa0307090 MtrunA17_Chr7g0273671 66.667 42 14 0 32 73 1 42 2.88e-11 58.5
Msa0307090 MtrunA17_Chr3g0134131 28.395 162 112 1 260 417 122 283 4.18e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307090 AT5G17540.1 59.243 449 171 9 33 474 1 444 0.0 526
Msa0307090 AT3G03480.1 57.562 443 173 11 37 471 15 450 1.84e-169 486
Msa0307090 AT5G41040.2 32.207 444 279 10 32 466 8 438 5.80e-81 258
Msa0307090 AT5G41040.1 32.207 444 279 10 32 466 24 454 1.06e-80 258
Msa0307090 AT5G63560.1 33.409 443 269 11 33 467 1 425 5.40e-79 253
Msa0307090 AT3G48720.1 31.350 437 280 11 33 462 1 424 6.88e-74 240
Msa0307090 AT1G27620.1 30.201 447 281 12 42 476 10 437 2.25e-56 194
Msa0307090 AT3G62160.1 30.197 457 273 16 37 476 1 428 1.60e-54 189
Msa0307090 AT1G65450.1 29.322 457 287 13 32 470 11 449 3.39e-51 181
Msa0307090 AT2G40230.1 33.333 387 234 11 49 420 13 390 3.75e-50 177
Msa0307090 AT1G03390.1 30.193 467 298 16 14 466 3 455 4.52e-50 177
Msa0307090 AT1G28680.1 29.025 441 290 14 48 471 11 445 1.48e-48 173
Msa0307090 AT2G19070.1 29.070 430 264 13 67 466 29 447 5.52e-48 172
Msa0307090 AT5G57840.1 28.409 440 273 11 49 464 11 432 9.14e-48 171
Msa0307090 AT5G48930.1 29.680 438 270 14 49 466 11 430 3.51e-47 169
Msa0307090 AT1G28680.2 31.395 344 222 10 48 381 11 350 1.81e-44 161
Msa0307090 AT3G47170.1 27.310 487 277 17 35 470 6 466 3.68e-43 159
Msa0307090 AT5G07080.1 28.723 470 271 16 33 467 6 446 3.36e-42 156
Msa0307090 AT2G23510.1 28.541 466 284 17 33 469 5 450 2.12e-39 148
Msa0307090 AT2G25150.1 28.758 459 290 16 37 471 9 454 9.48e-39 147
Msa0307090 AT1G78990.1 27.820 399 250 12 94 471 65 446 3.22e-32 128
Msa0307090 AT1G31490.1 26.076 395 246 13 49 419 14 386 1.00e-29 121
Msa0307090 AT5G07860.1 26.846 447 272 15 47 467 24 441 1.71e-27 115
Msa0307090 AT1G65450.3 27.946 297 185 8 190 470 2 285 7.57e-27 110
Msa0307090 AT5G07870.1 26.872 454 263 17 47 460 24 448 5.16e-26 110
Msa0307090 AT1G32910.1 26.420 405 255 15 94 471 63 451 1.21e-25 109
Msa0307090 AT5G42830.1 27.692 455 247 17 47 460 23 436 1.95e-25 108
Msa0307090 AT1G24430.1 24.570 407 255 15 75 462 41 414 2.03e-24 105
Msa0307090 AT3G50270.1 27.119 413 233 15 55 429 30 412 3.17e-24 105
Msa0307090 AT5G07850.1 26.456 412 262 15 47 431 24 421 1.08e-23 103
Msa0307090 AT4G31910.1 27.051 451 276 15 49 462 17 451 3.15e-23 102
Msa0307090 AT3G50280.1 26.382 398 252 17 55 429 28 407 3.83e-23 102
Msa0307090 AT5G38130.1 25.879 398 252 14 55 429 48 425 5.45e-23 102
Msa0307090 AT5G67150.1 25.629 437 265 18 55 462 30 435 8.23e-23 101
Msa0307090 AT3G26040.1 23.485 396 260 14 47 420 9 383 1.99e-22 100
Msa0307090 AT3G50300.1 26.870 361 225 13 96 429 59 407 1.98e-21 97.1
Msa0307090 AT1G24420.2 26.434 401 235 17 47 418 11 380 1.66e-20 94.4
Msa0307090 AT1G24420.1 26.434 401 235 17 47 418 11 380 1.66e-20 94.4
Msa0307090 AT5G16410.1 25.862 348 223 12 94 420 89 422 1.61e-19 91.7
Msa0307090 AT5G47980.1 26.180 466 277 22 47 479 11 442 2.66e-19 90.9
Msa0307090 AT5G67160.1 26.406 409 238 15 90 467 50 426 3.42e-19 90.5
Msa0307090 AT3G30280.1 24.222 450 283 18 38 459 3 422 7.29e-17 83.2
Msa0307090 AT5G23940.1 24.823 423 238 16 93 470 62 449 8.42e-16 80.1
Msa0307090 AT3G50280.2 26.007 273 184 10 170 429 10 277 1.38e-15 78.2
Msa0307090 AT3G50290.1 25.556 270 160 9 170 414 16 269 9.03e-14 72.0
Msa0307090 AT5G47950.1 22.955 440 284 18 38 459 3 405 1.90e-13 72.8
Msa0307090 AT3G23840.1 28.643 199 117 7 112 301 81 263 5.50e-12 68.2
Msa0307090 AT4G15400.1 25.060 415 244 19 96 480 58 435 1.85e-11 66.6

Find 134 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 2_3:+66656596 Msa0307090:CDS
TTCAAACCAACATTAGTTTA+AGG 0.181902 2_3:-66659220 None:intergenic
AATTATACCTTTCCTCATTA+TGG 0.183641 2_3:+66656161 Msa0307090:CDS
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 2_3:-66658608 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 2_3:-66656336 None:intergenic
GCATTCAGTTGCGGATTTAA+TGG 0.222413 2_3:+66658867 Msa0307090:CDS
TTTGAGGGTCTTACAAATTC+AGG 0.246276 2_3:-66656219 None:intergenic
TTTGAAAACGTAACCCTTCT+TGG 0.271683 2_3:-66656284 None:intergenic
GGTATTTAGCTCAATTAATA+AGG 0.282791 2_3:-66659323 None:intergenic
TTGATAGTGGTTATTATAGA+AGG 0.302952 2_3:-66656120 None:intergenic
TAAACGAACTTATGATAATA+AGG 0.304041 2_3:-66659523 None:intergenic
CACCTAAGGCACTCATGAAT+TGG 0.305227 2_3:-66658354 None:intergenic
TGAATTTCCTTTGCTATGAT+TGG 0.316077 2_3:+66659239 Msa0307090:three_prime_UTR
GCGATGGGCCATGTCATCTA+AGG 0.318314 2_3:-66658515 None:intergenic
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 2_3:+66656406 Msa0307090:CDS
TAAGGGAATAATTGTTCCTT+TGG 0.330029 2_3:-66658497 None:intergenic
TTGGAGATGTTGACTTTGGT+TGG 0.341202 2_3:+66658959 Msa0307090:CDS
GGTTGGGGAAAAGCTGTATA+TGG 0.341822 2_3:+66658976 Msa0307090:CDS
CCCGTCGCGGTTACAACCGC+TGG 0.344616 2_3:+66658766 Msa0307090:CDS
GATGTTAGTTTGAAAGAATT+TGG 0.347283 2_3:+66656498 Msa0307090:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 2_3:-66659186 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 2_3:+66656323 Msa0307090:CDS
GATGTGACACGTGCTGGATT+TGG 0.363433 2_3:+66658940 Msa0307090:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 2_3:+66659065 Msa0307090:CDS
TGGAGATGTTGACTTTGGTT+GGG 0.387463 2_3:+66658960 Msa0307090:CDS
CTGCTGCGTCACACATTGTA+TGG 0.389180 2_3:-66658324 None:intergenic
AACATTAACGAACCTACTAT+TGG 0.395610 2_3:+66659159 Msa0307090:CDS
AAATCCTCACCGCATGCCTT+TGG 0.410833 2_3:+66658617 Msa0307090:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.411133 2_3:-66658490 None:intergenic
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 2_3:-66658664 None:intergenic
AAACTAATGGAAAATCCGTT+AGG 0.419834 2_3:+66658790 Msa0307090:CDS
TCCATTTGCAGGTAGGTTAA+GGG 0.425790 2_3:+66656407 Msa0307090:CDS
TGCGGATTTAATGGTTATCA+AGG 0.430701 2_3:+66658876 Msa0307090:CDS
CCTTAGGTGAAATTTCTTGC+GGG 0.433387 2_3:+66658368 Msa0307090:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 2_3:+66658352 Msa0307090:CDS
TACAACCGCTGGGAAACTAA+TGG 0.437340 2_3:+66658777 Msa0307090:CDS
TCCCTTAACCTACCTGCAAA+TGG 0.437418 2_3:-66656408 None:intergenic
CCAGCGGTTGTAACCGCGAC+GGG 0.438069 2_3:-66658766 None:intergenic
AATGTGTGACGCAGCAGGTT+TGG 0.438562 2_3:+66658330 Msa0307090:CDS
TCACTGTGAATGATAGAGAT+TGG 0.444139 2_3:-66656185 None:intergenic
AGGTCCTGACAGGAAACTTA+TGG 0.445457 2_3:+66656431 Msa0307090:CDS
AGTGCTTAACTCTCCATTGT+TGG 0.450887 2_3:+66656587 Msa0307090:CDS
GAAAGGTATAATTGAAGAAA+GGG 0.453489 2_3:-66656151 None:intergenic
GCATTACCGTAGTAACCATT+TGG 0.454482 2_3:-66658733 None:intergenic
ATATAATGCGCCACATGCAT+TGG 0.460594 2_3:-66656077 None:intergenic
TACTTATAAAATTGTATCAC+TGG 0.463814 2_3:-66656309 None:intergenic
AAGGGTACTAAATTTGATAG+TGG 0.464191 2_3:-66656133 None:intergenic
CACTGTGAATGATAGAGATT+GGG 0.466767 2_3:-66656184 None:intergenic
TTGAGGGTCTTACAAATTCA+GGG 0.476311 2_3:-66656218 None:intergenic
GGAAAGGTATAATTGAAGAA+AGG 0.476453 2_3:-66656152 None:intergenic
CAATCTCACCGGTATGGCAT+AGG 0.484304 2_3:+66658404 Msa0307090:CDS
TGTAGACCTTAAACTAATGT+TGG 0.490789 2_3:+66659214 Msa0307090:exon
TATAATGCGCCACATGCATT+GGG 0.492129 2_3:-66656076 None:intergenic
TTTAATCCACCGTTACCAAA+TGG 0.496653 2_3:+66658718 Msa0307090:CDS
GGATTTGGAGATGTTGACTT+TGG 0.497797 2_3:+66658955 Msa0307090:CDS
AAGTATGATCCAAATATGGC+AGG 0.501582 2_3:+66656327 Msa0307090:CDS
GTGTCTGATGTGACACGTGC+TGG 0.502256 2_3:+66658934 Msa0307090:CDS
TGAGTACATGTTACTCTTGG+TGG 0.504345 2_3:-66658448 None:intergenic
CGAATTGTGGCTACCTCGGT+TGG 0.505273 2_3:-66658553 None:intergenic
AGCTCATCCAAACAAGGAAA+AGG 0.507667 2_3:-66656537 None:intergenic
CGATGAGTACATGTTACTCT+TGG 0.511451 2_3:-66658451 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 2_3:-66659105 None:intergenic
AATAATTGTTCCTTTGGTGT+CGG 0.522248 2_3:-66658491 None:intergenic
TGCCATACCGGTGAGATTGA+AGG 0.523692 2_3:-66658400 None:intergenic
AACTAATGGAAAATCCGTTA+GGG 0.528322 2_3:+66658791 Msa0307090:CDS
GGAGATGTTGACTTTGGTTG+GGG 0.528669 2_3:+66658961 Msa0307090:CDS
AACGATAAGACATTATATGA+TGG 0.532826 2_3:-66659433 None:intergenic
GGAGGAGTTGGTGCTATACC+TGG 0.535378 2_3:+66659012 Msa0307090:CDS
CACACATTGTATGGTTTAGA+CGG 0.536195 2_3:-66658315 None:intergenic
CATGTATTCTTGAGTTACAT+CGG 0.537828 2_3:-66658845 None:intergenic
GCACCAACTCCTCCTTTAGC+TGG 0.539177 2_3:-66659003 None:intergenic
GTATATGGTGGACCAGCTAA+AGG 0.539427 2_3:+66658991 Msa0307090:CDS
GCCTTAGGTGAAATTTCTTG+CGG 0.540414 2_3:+66658367 Msa0307090:CDS
ATTATTGCAGCAGCACTATG+TGG 0.541966 2_3:+66656048 None:intergenic
CTCTTTGACGAACTTCTCCA+TGG 0.543009 2_3:-66659115 None:intergenic
AATCTCACCGGTATGGCATA+GGG 0.546127 2_3:+66658405 Msa0307090:CDS
TCCACCATAAGTTTCCTGTC+AGG 0.550793 2_3:-66656435 None:intergenic
GGTTAAGGGAAGGTCCTGAC+AGG 0.552476 2_3:+66656421 Msa0307090:CDS
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 2_3:+66659098 Msa0307090:CDS
AGAAGCTCCCTATGCCATAC+CGG 0.552944 2_3:-66658412 None:intergenic
GGACCAGCTAAAGGAGGAGT+TGG 0.553044 2_3:+66659000 Msa0307090:CDS
ATAGGGAGCTTCTAAATGCA+AGG 0.554177 2_3:+66658422 Msa0307090:CDS
CAGATATAGATGACCAAGAA+GGG 0.559168 2_3:+66656271 Msa0307090:CDS
ATAGAGATTGGGCCATAATG+AGG 0.559544 2_3:-66656173 None:intergenic
TTTATTATCCATTTGCAGGT+AGG 0.559740 2_3:+66656400 Msa0307090:CDS
AGTGGTTATTATAGAAGGTA+CGG 0.560178 2_3:-66656115 None:intergenic
ATTAACGAACCTACTATTGG+TGG 0.562257 2_3:+66659162 Msa0307090:CDS
TCAGATATAGATGACCAAGA+AGG 0.565827 2_3:+66656270 Msa0307090:CDS
AGCGCGAATTGTGGCTACCT+CGG 0.567132 2_3:-66658557 None:intergenic
AACCTTCAATCTCACCGGTA+TGG 0.568331 2_3:+66658398 Msa0307090:CDS
CCCGCAAGAAATTTCACCTA+AGG 0.570019 2_3:-66658368 None:intergenic
CTCTATCATTCACAGTGAAG+AGG 0.571132 2_3:+66656190 Msa0307090:CDS
CCGTCGCGGTTACAACCGCT+GGG 0.572108 2_3:+66658767 Msa0307090:CDS
AGTATGATCCAAATATGGCA+GGG 0.572294 2_3:+66656328 Msa0307090:CDS
AACTCTAGTGCATACCCTAA+CGG 0.573134 2_3:-66658805 None:intergenic
CCGTTACCAAATGGTTACTA+CGG 0.574521 2_3:+66658727 Msa0307090:CDS
AGAATACATGCATTCAGTTG+CGG 0.574989 2_3:+66658858 Msa0307090:CDS
AATTATTCCCTTAGATGACA+TGG 0.576689 2_3:+66658507 Msa0307090:CDS
CATACAATGTGTGACGCAGC+AGG 0.579280 2_3:+66658325 Msa0307090:CDS
CGATTGTACGACAACGCCAA+AGG 0.587072 2_3:-66658633 None:intergenic
AATACCTGAATCACCAACAA+TGG 0.589517 2_3:-66656600 None:intergenic
ACATTAGTTTAAGGTCTACA+AGG 0.590944 2_3:-66659211 None:intergenic
CGATGGGCCATGTCATCTAA+GGG 0.603002 2_3:-66658514 None:intergenic
AAGGAAGAAACAATGAAACT+AGG 0.603955 2_3:-66659192 None:intergenic
TTATTGCAGCAGCACTATGT+GGG 0.605382 2_3:+66656049 None:intergenic
GCGGATTTAATGGTTATCAA+GGG 0.606067 2_3:+66658877 Msa0307090:CDS
ATCTGCATTGTCAATGCTCG+TGG 0.609350 2_3:+66658691 Msa0307090:CDS
CCGTAGTAACCATTTGGTAA+CGG 0.610295 2_3:-66658727 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 2_3:-66659030 None:intergenic
TCTCACACCAATCATAGCAA+AGG 0.613641 2_3:-66659246 None:intergenic
GAACGAACCTTCAATCTCAC+CGG 0.615082 2_3:+66658393 Msa0307090:CDS
TGGGAGAAGAGCGCGAATTG+TGG 0.616656 2_3:-66658566 None:intergenic
CTTCTAACCACAGTAAAATG+TGG 0.618528 2_3:-66658904 None:intergenic
AAAAGTAGCTCATCCAAACA+AGG 0.619216 2_3:-66656543 None:intergenic
TGAGGGTCTTACAAATTCAG+GGG 0.622901 2_3:-66656217 None:intergenic
CCCAGCGGTTGTAACCGCGA+CGG 0.625128 2_3:-66658767 None:intergenic
ATGGTGGATTGTAATGATGA+AGG 0.626655 2_3:+66656450 Msa0307090:CDS
GATTGGGCCATAATGAGGAA+AGG 0.628876 2_3:-66656168 None:intergenic
GAACAAGTTCCCGACACCAA+AGG 0.634936 2_3:+66658481 Msa0307090:CDS
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 2_3:-66659093 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.640809 2_3:-66656534 None:intergenic
TAGGGAGCTTCTAAATGCAA+GGG 0.644953 2_3:+66658423 Msa0307090:CDS
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 2_3:+66656411 Msa0307090:CDS
TAGTAACCATTTGGTAACGG+TGG 0.653193 2_3:-66658724 None:intergenic
TAGGTAACACGTCTCAAGTG+TGG 0.654765 2_3:+66658274 Msa0307090:intron
AACGCCAAAGGCATGCGGTG+AGG 0.656317 2_3:-66658621 None:intergenic
TCCTGACAGGAAACTTATGG+TGG 0.657173 2_3:+66656434 Msa0307090:CDS
TGGGGAAAAGCTGTATATGG+TGG 0.663720 2_3:+66658979 Msa0307090:CDS
TATGGTGGACCAGCTAAAGG+AGG 0.665823 2_3:+66658994 Msa0307090:CDS
TTAAGCACTTCTGAAGAACC+AGG 0.667440 2_3:-66656573 None:intergenic
GTGGGTTATCCCAATGCATG+TGG 0.683744 2_3:+66656067 Msa0307090:exon
GTTGCAAAAGATAATCACGA+TGG 0.685988 2_3:+66659282 Msa0307090:three_prime_UTR
GTAACACGTCTCAAGTGTGG+TGG 0.692143 2_3:+66658277 Msa0307090:CDS
ACGACAACGCCAAAGGCATG+CGG 0.713965 2_3:-66658626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCTTTTGAAAAATTAA+CGG - chr2_3:66656801-66656820 None:intergenic 10.0%
!! AAATAGATAACTTTATATTA+TGG + chr2_3:66656816-66656835 Msa0307090:intron 10.0%
!!! TATTTCTTTTGAAAAATTAA+CGG - chr2_3:66656801-66656820 None:intergenic 10.0%
!! AAATAGATAACTTTATATTA+TGG + chr2_3:66656816-66656835 Msa0307090:intron 10.0%
!!! ATTATTTTAGGTTATTATTT+TGG - chr2_3:66657393-66657412 None:intergenic 10.0%
!!! TAACCTAAAATAATTTTTTA+AGG + chr2_3:66657399-66657418 Msa0307090:intron 10.0%
!!! TTTCCTTAAAAAATTATTTT+AGG - chr2_3:66657405-66657424 None:intergenic 10.0%
!!! ATTATCATTTTTCATTTTTT+TGG + chr2_3:66657578-66657597 Msa0307090:intron 10.0%
!!! TTATCATTTTTCATTTTTTT+GGG + chr2_3:66657579-66657598 Msa0307090:intron 10.0%
!! TATATTTCATAAATTTACAG+TGG + chr2_3:66656668-66656687 Msa0307090:intron 15.0%
!!! ATTTTGGACTTTTTTTTTTT+TGG + chr2_3:66657171-66657190 Msa0307090:intron 15.0%
!!! TTTTATGCAATTAAATAAGA+TGG - chr2_3:66657504-66657523 None:intergenic 15.0%
!! TATTTAATTGCATAAAAAAC+TGG + chr2_3:66657507-66657526 Msa0307090:intron 15.0%
!!! TATCATTTTTCATTTTTTTG+GGG + chr2_3:66657580-66657599 Msa0307090:intron 15.0%
!! TCAAAAAAAAAAAAAAGAGT+GGG + chr2_3:66657922-66657941 Msa0307090:intron 15.0%
!! TACTTATAAAATTGTATCAC+TGG - chr2_3:66656312-66656331 None:intergenic 20.0%
!! TTATAAGTATGATCCAAATA+TGG + chr2_3:66656323-66656342 Msa0307090:CDS 20.0%
!!! CTTTTCTAATAATATCAACA+GGG - chr2_3:66656359-66656378 None:intergenic 20.0%
!! TGAAACAATATTTAAATCCT+AGG + chr2_3:66657317-66657336 Msa0307090:intron 20.0%
!!! ATCATTTTTCATTTTTTTGG+GGG + chr2_3:66657581-66657600 Msa0307090:intron 20.0%
!! CTTACATGTAAATTTGTAAA+TGG + chr2_3:66657607-66657626 Msa0307090:intron 20.0%
!!! TGGCACATATATTTTTTTAA+AGG + chr2_3:66657627-66657646 Msa0307090:intron 20.0%
!! AAAAAAATTTAATTCAGCTG+AGG + chr2_3:66657845-66657864 Msa0307090:intron 20.0%
!! GTCAAAAAAAAAAAAAAGAG+TGG + chr2_3:66657921-66657940 Msa0307090:intron 20.0%
!! TAGACAAAATTTATACATCA+CGG + chr2_3:66658094-66658113 Msa0307090:intron 20.0%
!!! AACTTTAACAACATTTTTCA+CGG - chr2_3:66659348-66659367 None:intergenic 20.0%
!! TAAACGAACTTATGATAATA+AGG - chr2_3:66659526-66659545 None:intergenic 20.0%
!!! TTGATAGTGGTTATTATAGA+AGG - chr2_3:66656123-66656142 None:intergenic 25.0%
!! GAAAGGTATAATTGAAGAAA+GGG - chr2_3:66656154-66656173 None:intergenic 25.0%
! AATTATACCTTTCCTCATTA+TGG + chr2_3:66656161-66656180 Msa0307090:CDS 25.0%
!! GCTTTTCTAATAATATCAAC+AGG - chr2_3:66656360-66656379 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG + chr2_3:66656498-66656517 Msa0307090:CDS 25.0%
! ATATAGTACAAGTGTATGTA+CGG - chr2_3:66656725-66656744 None:intergenic 25.0%
! ATATAGTACGAGTATATGTT+GGG - chr2_3:66656771-66656790 None:intergenic 25.0%
! AATATAGTACGAGTATATGT+TGG - chr2_3:66656772-66656791 None:intergenic 25.0%
! CATATACTCGTACTATATTA+AGG + chr2_3:66656773-66656792 Msa0307090:intron 25.0%
!!! AACTTAAGTTGGTTAGATTT+TGG + chr2_3:66657155-66657174 Msa0307090:intron 25.0%
!!! GACTTTTTTTTTTTTGGTAG+TGG + chr2_3:66657177-66657196 Msa0307090:intron 25.0%
! TTTCTATCGAATAGAATCTT+AGG + chr2_3:66657364-66657383 Msa0307090:intron 25.0%
! ATGCAATTAAATAAGATGGT+AGG - chr2_3:66657500-66657519 None:intergenic 25.0%
!! GTTCACAAACAAAATTTTAC+AGG + chr2_3:66657699-66657718 Msa0307090:intron 25.0%
!!! GCAAGCACAAATAATTTTTT+GGG + chr2_3:66657721-66657740 Msa0307090:intron 25.0%
! AAAAAAAAAAAAAGAGTGGG+TGG + chr2_3:66657925-66657944 Msa0307090:intron 25.0%
! AAAAAAAAAAAAGAGTGGGT+GGG + chr2_3:66657926-66657945 Msa0307090:intron 25.0%
! ATACCTTTCAAAAATGCTAA+AGG + chr2_3:66659051-66659070 Msa0307090:CDS 25.0%
!! TTCAAACCAACATTAGTTTA+AGG - chr2_3:66659223-66659242 None:intergenic 25.0%
!! GGTATTTAGCTCAATTAATA+AGG - chr2_3:66659326-66659345 None:intergenic 25.0%
!! ACTTTAACAACATTTTTCAC+GGG - chr2_3:66659347-66659366 None:intergenic 25.0%
! AACGATAAGACATTATATGA+TGG - chr2_3:66659436-66659455 None:intergenic 25.0%
AGTGGTTATTATAGAAGGTA+CGG - chr2_3:66656118-66656137 None:intergenic 30.0%
!! AAGGGTACTAAATTTGATAG+TGG - chr2_3:66656136-66656155 None:intergenic 30.0%
! GGAAAGGTATAATTGAAGAA+AGG - chr2_3:66656155-66656174 None:intergenic 30.0%
! GAGAGTAATTTTACTTCATG+AGG - chr2_3:66656252-66656271 None:intergenic 30.0%
!! GTGTTTTATTATCCATTTGC+AGG + chr2_3:66656396-66656415 Msa0307090:CDS 30.0%
TTTATTATCCATTTGCAGGT+AGG + chr2_3:66656400-66656419 Msa0307090:CDS 30.0%
AACTTAGACACAACTTAAGT+TGG + chr2_3:66657144-66657163 Msa0307090:intron 30.0%
!!! TTTTTTTTTTTGGTAGTGGC+TGG + chr2_3:66657181-66657200 Msa0307090:intron 30.0%
!!! TTTTTTTTTTGGTAGTGGCT+GGG + chr2_3:66657182-66657201 Msa0307090:intron 30.0%
! ACACTTAGATTTTGGACTAA+TGG + chr2_3:66657269-66657288 Msa0307090:intron 30.0%
!!! GGCAAGCACAAATAATTTTT+TGG + chr2_3:66657720-66657739 Msa0307090:intron 30.0%
! TTGATTGAAACGACACATTT+TGG - chr2_3:66657953-66657972 None:intergenic 30.0%
!! CTTGAATTTTGACCATTTGT+AGG + chr2_3:66658255-66658274 Msa0307090:intron 30.0%
! AATAATTGTTCCTTTGGTGT+CGG - chr2_3:66658494-66658513 None:intergenic 30.0%
TAAGGGAATAATTGTTCCTT+TGG - chr2_3:66658500-66658519 None:intergenic 30.0%
AATTATTCCCTTAGATGACA+TGG + chr2_3:66658507-66658526 Msa0307090:CDS 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG - chr2_3:66658597-66658616 None:intergenic 30.0%
AAACTAATGGAAAATCCGTT+AGG + chr2_3:66658790-66658809 Msa0307090:CDS 30.0%
AACTAATGGAAAATCCGTTA+GGG + chr2_3:66658791-66658810 Msa0307090:CDS 30.0%
CATGTATTCTTGAGTTACAT+CGG - chr2_3:66658848-66658867 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG - chr2_3:66659057-66659076 None:intergenic 30.0%
TTTCAAAAATGCTAAAGGAG+AGG + chr2_3:66659056-66659075 Msa0307090:CDS 30.0%
AACATTAACGAACCTACTAT+TGG + chr2_3:66659159-66659178 Msa0307090:CDS 30.0%
! GAAACAATGAAACTAGGTTT+TGG - chr2_3:66659189-66659208 None:intergenic 30.0%
AAGGAAGAAACAATGAAACT+AGG - chr2_3:66659195-66659214 None:intergenic 30.0%
! ACATTAGTTTAAGGTCTACA+AGG - chr2_3:66659214-66659233 None:intergenic 30.0%
TGTAGACCTTAAACTAATGT+TGG + chr2_3:66659214-66659233 Msa0307090:exon 30.0%
! TGAATTTCCTTTGCTATGAT+TGG + chr2_3:66659239-66659258 Msa0307090:three_prime_UTR 30.0%
CACTGTGAATGATAGAGATT+GGG - chr2_3:66656187-66656206 None:intergenic 35.0%
TCACTGTGAATGATAGAGAT+TGG - chr2_3:66656188-66656207 None:intergenic 35.0%
TTGAGGGTCTTACAAATTCA+GGG - chr2_3:66656221-66656240 None:intergenic 35.0%
TTTGAGGGTCTTACAAATTC+AGG - chr2_3:66656222-66656241 None:intergenic 35.0%
!!! TCATGAGGTGTTTGTTTTGA+GGG - chr2_3:66656237-66656256 None:intergenic 35.0%
!!! TTCATGAGGTGTTTGTTTTG+AGG - chr2_3:66656238-66656257 None:intergenic 35.0%
TCAGATATAGATGACCAAGA+AGG + chr2_3:66656270-66656289 Msa0307090:CDS 35.0%
CAGATATAGATGACCAAGAA+GGG + chr2_3:66656271-66656290 Msa0307090:CDS 35.0%
TTTGAAAACGTAACCCTTCT+TGG - chr2_3:66656287-66656306 None:intergenic 35.0%
AAGTATGATCCAAATATGGC+AGG + chr2_3:66656327-66656346 Msa0307090:CDS 35.0%
AGTATGATCCAAATATGGCA+GGG + chr2_3:66656328-66656347 Msa0307090:CDS 35.0%
!! ATGGTGGATTGTAATGATGA+AGG + chr2_3:66656450-66656469 Msa0307090:CDS 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG + chr2_3:66656467-66656486 Msa0307090:CDS 35.0%
AAAAGTAGCTCATCCAAACA+AGG - chr2_3:66656546-66656565 None:intergenic 35.0%
AATACCTGAATCACCAACAA+TGG - chr2_3:66656603-66656622 None:intergenic 35.0%
!!! TTTTTTTTTGGTAGTGGCTG+GGG + chr2_3:66657183-66657202 Msa0307090:intron 35.0%
GACAATGCATAAAGTATGCA+AGG - chr2_3:66657222-66657241 None:intergenic 35.0%
! TGCAAGACACTTTTATTCCT+AGG - chr2_3:66657337-66657356 None:intergenic 35.0%
AAATGATTCAAGTGAGGTCA+AGG - chr2_3:66657793-66657812 None:intergenic 35.0%
CTACACAAATGATTCAAGTG+AGG - chr2_3:66657799-66657818 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG + chr2_3:66657797-66657816 Msa0307090:intron 35.0%
! TCTTTGTTTCCTAGAAAGAG+TGG + chr2_3:66657893-66657912 Msa0307090:intron 35.0%
! CTTTGTTTCCTAGAAAGAGT+GGG + chr2_3:66657894-66657913 Msa0307090:intron 35.0%
TTTGTTTCCTAGAAAGAGTG+GGG + chr2_3:66657895-66657914 Msa0307090:intron 35.0%
AGACACACACTAGAGTTAAA+AGG - chr2_3:66657992-66658011 None:intergenic 35.0%
CACAACAAGTGTTTCATTTG+TGG + chr2_3:66658179-66658198 Msa0307090:intron 35.0%
CACACATTGTATGGTTTAGA+CGG - chr2_3:66658318-66658337 None:intergenic 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG - chr2_3:66658493-66658512 None:intergenic 35.0%
!!! ATTGTTTTTGTTGGTGAGGT+GGG - chr2_3:66658588-66658607 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG - chr2_3:66658592-66658611 None:intergenic 35.0%
TTTAATCCACCGTTACCAAA+TGG + chr2_3:66658718-66658737 Msa0307090:CDS 35.0%
!! ATTTTCCATTAGTTTCCCAG+CGG - chr2_3:66658785-66658804 None:intergenic 35.0%
AGAATACATGCATTCAGTTG+CGG + chr2_3:66658858-66658877 Msa0307090:CDS 35.0%
TGCGGATTTAATGGTTATCA+AGG + chr2_3:66658876-66658895 Msa0307090:CDS 35.0%
GCGGATTTAATGGTTATCAA+GGG + chr2_3:66658877-66658896 Msa0307090:CDS 35.0%
CTTCTAACCACAGTAAAATG+TGG - chr2_3:66658907-66658926 None:intergenic 35.0%
ATATAAAAGCTAGCAACACC+AGG - chr2_3:66659033-66659052 None:intergenic 35.0%
AAAAATGCTAAAGGAGAGGA+AGG + chr2_3:66659060-66659079 Msa0307090:CDS 35.0%
ATTAACGAACCTACTATTGG+TGG + chr2_3:66659162-66659181 Msa0307090:CDS 35.0%
GTTGCAAAAGATAATCACGA+TGG + chr2_3:66659282-66659301 Msa0307090:three_prime_UTR 35.0%
TATAATGCGCCACATGCATT+GGG - chr2_3:66656079-66656098 None:intergenic 40.0%
ATATAATGCGCCACATGCAT+TGG - chr2_3:66656080-66656099 None:intergenic 40.0%
ATAGAGATTGGGCCATAATG+AGG - chr2_3:66656176-66656195 None:intergenic 40.0%
CTCTATCATTCACAGTGAAG+AGG + chr2_3:66656190-66656209 Msa0307090:CDS 40.0%
TGAGGGTCTTACAAATTCAG+GGG - chr2_3:66656220-66656239 None:intergenic 40.0%
ATCCATTTGCAGGTAGGTTA+AGG + chr2_3:66656406-66656425 Msa0307090:CDS 40.0%
TCCATTTGCAGGTAGGTTAA+GGG + chr2_3:66656407-66656426 Msa0307090:CDS 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG + chr2_3:66656530-66656549 Msa0307090:CDS 40.0%
TCATCCAAACAAGGAAAAGG+AGG - chr2_3:66656537-66656556 None:intergenic 40.0%
AGCTCATCCAAACAAGGAAA+AGG - chr2_3:66656540-66656559 None:intergenic 40.0%
!!! GAGCTACTTTTTGATGTTCC+TGG + chr2_3:66656555-66656574 Msa0307090:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG - chr2_3:66656576-66656595 None:intergenic 40.0%
AGTGCTTAACTCTCCATTGT+TGG + chr2_3:66656587-66656606 Msa0307090:CDS 40.0%
CAAGTGTATGTACGGATTTG+CGG - chr2_3:66656717-66656736 None:intergenic 40.0%
! TGAGTTTAGCTCAGTTGGTT+GGG - chr2_3:66657244-66657263 None:intergenic 40.0%
! TCACGAGGACACTTAGATTT+TGG + chr2_3:66657261-66657280 Msa0307090:intron 40.0%
TCACGGATCAAGCTATTACA+TGG + chr2_3:66658111-66658130 Msa0307090:intron 40.0%
GGATCAAGCTATTACATGGT+TGG + chr2_3:66658115-66658134 Msa0307090:intron 40.0%
TGAGACGTGTTACCTACAAA+TGG - chr2_3:66658270-66658289 None:intergenic 40.0%
GCCTTAGGTGAAATTTCTTG+CGG + chr2_3:66658367-66658386 Msa0307090:CDS 40.0%
CCTTAGGTGAAATTTCTTGC+GGG + chr2_3:66658368-66658387 Msa0307090:CDS 40.0%
ATAGGGAGCTTCTAAATGCA+AGG + chr2_3:66658422-66658441 Msa0307090:CDS 40.0%
TAGGGAGCTTCTAAATGCAA+GGG + chr2_3:66658423-66658442 Msa0307090:CDS 40.0%
TGAGTACATGTTACTCTTGG+TGG - chr2_3:66658451-66658470 None:intergenic 40.0%
CGATGAGTACATGTTACTCT+TGG - chr2_3:66658454-66658473 None:intergenic 40.0%
ACCGAAGAAAAAAGAGCGAT+GGG - chr2_3:66658533-66658552 None:intergenic 40.0%
!!! GATTGTTTTTGTTGGTGAGG+TGG - chr2_3:66658589-66658608 None:intergenic 40.0%
!! TAGTAACCATTTGGTAACGG+TGG - chr2_3:66658727-66658746 None:intergenic 40.0%
CCGTAGTAACCATTTGGTAA+CGG - chr2_3:66658730-66658749 None:intergenic 40.0%
CCGTTACCAAATGGTTACTA+CGG + chr2_3:66658727-66658746 Msa0307090:CDS 40.0%
GCATTACCGTAGTAACCATT+TGG - chr2_3:66658736-66658755 None:intergenic 40.0%
AACTCTAGTGCATACCCTAA+CGG - chr2_3:66658808-66658827 None:intergenic 40.0%
GCATTCAGTTGCGGATTTAA+TGG + chr2_3:66658867-66658886 Msa0307090:CDS 40.0%
!! GGATTTGGAGATGTTGACTT+TGG + chr2_3:66658955-66658974 Msa0307090:CDS 40.0%
!! TTGGAGATGTTGACTTTGGT+TGG + chr2_3:66658959-66658978 Msa0307090:CDS 40.0%
!! TGGAGATGTTGACTTTGGTT+GGG + chr2_3:66658960-66658979 Msa0307090:CDS 40.0%
TCTCACACCAATCATAGCAA+AGG - chr2_3:66659249-66659268 None:intergenic 40.0%
GATTGGGCCATAATGAGGAA+AGG - chr2_3:66656171-66656190 None:intergenic 45.0%
TCCCTTAACCTACCTGCAAA+TGG - chr2_3:66656411-66656430 None:intergenic 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG + chr2_3:66656411-66656430 Msa0307090:CDS 45.0%
AGGTCCTGACAGGAAACTTA+TGG + chr2_3:66656431-66656450 Msa0307090:CDS 45.0%
TCCTGACAGGAAACTTATGG+TGG + chr2_3:66656434-66656453 Msa0307090:CDS 45.0%
TCCACCATAAGTTTCCTGTC+AGG - chr2_3:66656438-66656457 None:intergenic 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG + chr2_3:66656596-66656615 Msa0307090:CDS 45.0%
CGAGTATATGTTGGGATGAG+TGG - chr2_3:66656763-66656782 None:intergenic 45.0%
CATAAAGTATGCAAGGTCCG+AGG - chr2_3:66657215-66657234 None:intergenic 45.0%
! GTGAGTTTAGCTCAGTTGGT+TGG - chr2_3:66657245-66657264 None:intergenic 45.0%
TGACAAACCCCACTCTTTCT+AGG - chr2_3:66657905-66657924 None:intergenic 45.0%
TAGGTAACACGTCTCAAGTG+TGG + chr2_3:66658274-66658293 Msa0307090:intron 45.0%
GTCCAATTCATGAGTGCCTT+AGG + chr2_3:66658352-66658371 Msa0307090:CDS 45.0%
! CACCTAAGGCACTCATGAAT+TGG - chr2_3:66658357-66658376 None:intergenic 45.0%
CCCGCAAGAAATTTCACCTA+AGG - chr2_3:66658371-66658390 None:intergenic 45.0%
GAACGAACCTTCAATCTCAC+CGG + chr2_3:66658393-66658412 Msa0307090:CDS 45.0%
AACCTTCAATCTCACCGGTA+TGG + chr2_3:66658398-66658417 Msa0307090:CDS 45.0%
AATCTCACCGGTATGGCATA+GGG + chr2_3:66658405-66658424 Msa0307090:CDS 45.0%
!!! GCCCATCGCTCTTTTTTCTT+CGG + chr2_3:66658529-66658548 Msa0307090:CDS 45.0%
GACCGAAGAAAAAAGAGCGA+TGG - chr2_3:66658534-66658553 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG + chr2_3:66658540-66658559 Msa0307090:CDS 45.0%
TGCGGTGAGGATTTCGAAAT+TGG - chr2_3:66658611-66658630 None:intergenic 45.0%
ATCTGCATTGTCAATGCTCG+TGG + chr2_3:66658691-66658710 Msa0307090:CDS 45.0%
TACAACCGCTGGGAAACTAA+TGG + chr2_3:66658777-66658796 Msa0307090:CDS 45.0%
! GGGTAGACCACATTTTACTG+TGG + chr2_3:66658897-66658916 Msa0307090:CDS 45.0%
!! GGAGATGTTGACTTTGGTTG+GGG + chr2_3:66658961-66658980 Msa0307090:CDS 45.0%
GGTTGGGGAAAAGCTGTATA+TGG + chr2_3:66658976-66658995 Msa0307090:CDS 45.0%
TGGGGAAAAGCTGTATATGG+TGG + chr2_3:66658979-66658998 Msa0307090:CDS 45.0%
!! GTATATGGTGGACCAGCTAA+AGG + chr2_3:66658991-66659010 Msa0307090:CDS 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG + chr2_3:66659065-66659084 Msa0307090:CDS 45.0%
GCTTGAGCTGGTAAACAAAG+TGG - chr2_3:66659096-66659115 None:intergenic 45.0%
TTGTTTACCAGCTCAAGCCA+TGG + chr2_3:66659098-66659117 Msa0307090:CDS 45.0%
CTCTTTGACGAACTTCTCCA+TGG - chr2_3:66659118-66659137 None:intergenic 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG - chr2_3:66659174-66659193 None:intergenic 45.0%
!! ATAAATTAATTAGTTAAAAT+TGG - chr2_3:66658206-66658225 None:intergenic 5.0%
! GTGGGTTATCCCAATGCATG+TGG + chr2_3:66656067-66656086 Msa0307090:exon 50.0%
GGGTCTTTCCCTGCCATATT+TGG - chr2_3:66656339-66656358 None:intergenic 50.0%
!!! TTTTGGTAGTGGCTGGGGTT+TGG + chr2_3:66657188-66657207 Msa0307090:intron 50.0%
! CCTCGTGAGTTTAGCTCAGT+TGG - chr2_3:66657249-66657268 None:intergenic 50.0%
CCAACTGAGCTAAACTCACG+AGG + chr2_3:66657246-66657265 Msa0307090:intron 50.0%
GTAACACGTCTCAAGTGTGG+TGG + chr2_3:66658277-66658296 Msa0307090:CDS 50.0%
CTGCTGCGTCACACATTGTA+TGG - chr2_3:66658327-66658346 None:intergenic 50.0%
CATACAATGTGTGACGCAGC+AGG + chr2_3:66658325-66658344 Msa0307090:CDS 50.0%
AATGTGTGACGCAGCAGGTT+TGG + chr2_3:66658330-66658349 Msa0307090:CDS 50.0%
TGCCATACCGGTGAGATTGA+AGG - chr2_3:66658403-66658422 None:intergenic 50.0%
CAATCTCACCGGTATGGCAT+AGG + chr2_3:66658404-66658423 Msa0307090:CDS 50.0%
AGAAGCTCCCTATGCCATAC+CGG - chr2_3:66658415-66658434 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG + chr2_3:66658481-66658500 Msa0307090:CDS 50.0%
CGATGGGCCATGTCATCTAA+GGG - chr2_3:66658517-66658536 None:intergenic 50.0%
AAATCCTCACCGCATGCCTT+TGG + chr2_3:66658617-66658636 Msa0307090:CDS 50.0%
CGATTGTACGACAACGCCAA+AGG - chr2_3:66658636-66658655 None:intergenic 50.0%
CGAACTTCTTCGTCAGTGTC+TGG - chr2_3:66658667-66658686 None:intergenic 50.0%
GATGTGACACGTGCTGGATT+TGG + chr2_3:66658940-66658959 Msa0307090:CDS 50.0%
!! TATGGTGGACCAGCTAAAGG+AGG + chr2_3:66658994-66659013 Msa0307090:CDS 50.0%
AACTTCTCCATGGCTTGAGC+TGG - chr2_3:66659108-66659127 None:intergenic 50.0%
GGTTAAGGGAAGGTCCTGAC+AGG + chr2_3:66656421-66656440 Msa0307090:CDS 55.0%
GCGATGGGCCATGTCATCTA+AGG - chr2_3:66658518-66658537 None:intergenic 55.0%
CGAATTGTGGCTACCTCGGT+TGG - chr2_3:66658556-66658575 None:intergenic 55.0%
AGCGCGAATTGTGGCTACCT+CGG - chr2_3:66658560-66658579 None:intergenic 55.0%
! TGGGAGAAGAGCGCGAATTG+TGG - chr2_3:66658569-66658588 None:intergenic 55.0%
! ACGACAACGCCAAAGGCATG+CGG - chr2_3:66658629-66658648 None:intergenic 55.0%
! TGCTTTTGCGTTTCCCGTCG+CGG + chr2_3:66658753-66658772 Msa0307090:CDS 55.0%
GTGTCTGATGTGACACGTGC+TGG + chr2_3:66658934-66658953 Msa0307090:CDS 55.0%
GGACCAGCTAAAGGAGGAGT+TGG + chr2_3:66659000-66659019 Msa0307090:CDS 55.0%
GCACCAACTCCTCCTTTAGC+TGG - chr2_3:66659006-66659025 None:intergenic 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG + chr2_3:66659012-66659031 Msa0307090:CDS 55.0%
AGTGGCTGGGGTTTGGACCT+CGG + chr2_3:66657195-66657214 Msa0307090:intron 60.0%
! AACGCCAAAGGCATGCGGTG+AGG - chr2_3:66658624-66658643 None:intergenic 60.0%
CCAGCGGTTGTAACCGCGAC+GGG - chr2_3:66658769-66658788 None:intergenic 65.0%
CCCAGCGGTTGTAACCGCGA+CGG - chr2_3:66658770-66658789 None:intergenic 65.0%
CCGTCGCGGTTACAACCGCT+GGG + chr2_3:66658767-66658786 Msa0307090:CDS 65.0%
CCCGTCGCGGTTACAACCGC+TGG + chr2_3:66658766-66658785 Msa0307090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 66656051 66659549 66656051 ID=Msa0307090;Name=Msa0307090
chr2_3 mRNA 66656051 66659549 66656051 ID=Msa0307090-mRNA-1;Parent=Msa0307090;Name=Msa0307090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=33|1|1|1|1|1|2|331|491
chr2_3 exon 66656051 66656617 66656051 ID=Msa0307090-mRNA-1:exon:22115;Parent=Msa0307090-mRNA-1
chr2_3 exon 66658277 66659549 66658277 ID=Msa0307090-mRNA-1:exon:22116;Parent=Msa0307090-mRNA-1
chr2_3 five_prime_UTR 66656051 66656083 66656051 ID=Msa0307090-mRNA-1:five_prime_utr;Parent=Msa0307090-mRNA-1
chr2_3 CDS 66656084 66656617 66656084 ID=Msa0307090-mRNA-1:cds;Parent=Msa0307090-mRNA-1
chr2_3 CDS 66658277 66659218 66658277 ID=Msa0307090-mRNA-1:cds;Parent=Msa0307090-mRNA-1
chr2_3 three_prime_UTR 66659219 66659549 66659219 ID=Msa0307090-mRNA-1:three_prime_utr;Parent=Msa0307090-mRNA-1
Gene Sequence

>Msa0307090

ATGTGGCGCATTATATATACACTTGCATATACCGTACCTTCTATAATAACCACTATCAAATTTAGTACCCTTTCTTCAATTATACCTTTCCTCATTATGGCCCAATCTCTATCATTCACAGTGAAGAGGCATGCCCCTGAATTTGTAAGACCCTCAAAACAAACACCTCATGAAGTAAAATTACTCTCAGATATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGGTTAAGGGAAGGTCCTGACAGGAAACTTATGGTGGATTGTAATGATGAAGGTGTTTTGTTCATTGAGGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTACTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTCCGTCTAAACCATACAATGTGTGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGGATGAACGAACCTTCAATCTCACCGGTATGGCATAGGGAGCTTCTAAATGCAAGGGATCCACCAAGAGTAACATGTACTCATCGTGAATATGAACAAGTTCCCGACACCAAAGGAACAATTATTCCCTTAGATGACATGGCCCATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCCACAATTCGCGCTCTTCTCCCACCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCATTACAACCAGACACTGACGAAGAAGTTCGCATAATCTGCATTGTCAATGCTCGTGGCAAGTTTAATCCACCGTTACCAAATGGTTACTACGGTAATGCTTTTGCGTTTCCCGTCGCGGTTACAACCGCTGGGAAACTAATGGAAAATCCGTTAGGGTATGCACTAGAGTTAGTTAAAAAAGCAAAATCCGATGTAACTCAAGAATACATGCATTCAGTTGCGGATTTAATGGTTATCAAGGGTAGACCACATTTTACTGTGGTTAGAAGTTATCTAGTGTCTGATGTGACACGTGCTGGATTTGGAGATGTTGACTTTGGTTGGGGAAAAGCTGTATATGGTGGACCAGCTAAAGGAGGAGTTGGTGCTATACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTACCAGCTCAAGCCATGGAGAAGTTCGTCAAAGAGTTAGATAGTGTACTTAAGAACAACATTAACGAACCTACTATTGGTGGTCCAAAACCTAGTTTCATTGTTTCTTCCTTGTAG
Protein sequence

>Msa0307090

MWRIIYTLAYTVPSIITTIKFSTLSSIIPFLIMAQSLSFTVKRHAPEFVRPSKQTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGPDRKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMCDAAGLVQFMSALGEISCGMNEPSISPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVATIRALLPPHQQKQSNFEILTACLWRCRTIALQPDTDEEVRIICIVNARGKFNPPLPNGYYGNAFAFPVAVTTAGKLMENPLGYALELVKKAKSDVTQEYMHSVADLMVIKGRPHFTVVRSYLVSDVTRAGFGDVDFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPLCLPAQAMEKFVKELDSVLKNNINEPTIGGPKPSFIVSSL*