AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050170 MtrunA17_Chr1g0165671 96.646 477 16 0 15 491 1 477 0.0 951
Msa0050170 MtrunA17_Chr1g0165681 76.356 461 107 2 33 491 1 461 0.0 732
Msa0050170 MtrunA17_Chr1g0165661 74.403 461 113 3 33 491 1 458 0.0 699
Msa0050170 MtrunA17_Chr1g0165711 73.913 460 76 4 33 491 1 417 0.0 674
Msa0050170 MtrunA17_Chr5g0433641 59.130 460 178 6 37 491 6 460 0.0 557
Msa0050170 MtrunA17_Chr7g0273781 56.394 477 192 8 11 478 12 481 0.0 553
Msa0050170 MtrunA17_Chr7g0273791 59.202 451 175 6 37 482 6 452 0.0 553
Msa0050170 MtrunA17_Chr7g0273721 58.478 460 182 5 37 491 7 462 0.0 550
Msa0050170 MtrunA17_Chr7g0273761 55.918 490 197 10 14 491 351 833 0.0 545
Msa0050170 MtrunA17_Chr7g0273761 55.449 312 127 6 178 482 32 338 1.85e-108 341
Msa0050170 MtrunA17_Chr7g0273731 55.021 478 199 7 6 470 50 524 0.0 537
Msa0050170 MtrunA17_Chr1g0191081 60.502 438 168 5 36 470 13 448 0.0 534
Msa0050170 MtrunA17_Chr6g0471381 69.811 265 78 2 229 491 6 270 6.89e-133 385
Msa0050170 MtrunA17_Chr8g0353421 91.473 129 11 0 33 161 1 129 1.30e-79 244
Msa0050170 MtrunA17_Chr1g0165741 78.912 147 31 0 33 179 1 147 2.02e-79 244
Msa0050170 MtrunA17_Chr3g0132001 33.178 428 267 9 41 462 14 428 3.43e-78 251
Msa0050170 MtrunA17_Chr8g0386141 32.739 449 284 9 33 476 1 436 1.19e-77 249
Msa0050170 MtrunA17_Chr6g0471371 76.000 150 36 0 33 182 1 150 1.34e-77 240
Msa0050170 MtrunA17_Chr6g0471971 51.477 237 86 6 193 423 1 214 9.82e-77 239
Msa0050170 MtrunA17_Chr7g0224391 34.031 382 240 7 46 421 21 396 2.13e-73 238
Msa0050170 MtrunA17_Chr6g0471891 60.914 197 51 4 262 456 1 173 1.59e-71 227
Msa0050170 MtrunA17_Chr7g0273701 57.303 178 70 4 316 491 1 174 3.54e-63 203
Msa0050170 MtrunA17_Chr7g0273741 58.108 148 62 0 32 179 1 148 3.74e-59 192
Msa0050170 MtrunA17_Chr2g0306321 31.973 441 278 14 49 470 26 463 7.28e-59 201
Msa0050170 MtrunA17_Chr4g0027071 29.801 453 293 10 35 467 6 453 1.28e-57 197
Msa0050170 MtrunA17_Chr3g0141851 33.676 389 234 10 51 426 22 399 6.44e-56 193
Msa0050170 MtrunA17_Chr4g0001861 31.481 432 264 16 48 462 10 426 8.94e-53 184
Msa0050170 MtrunA17_Chr3g0098961 56.376 149 65 0 31 179 3 151 1.33e-52 176
Msa0050170 MtrunA17_Chr1g0165721 75.214 117 29 0 375 491 1 117 1.71e-52 173
Msa0050170 MtrunA17_Chr2g0334001 29.742 427 275 11 49 462 11 425 7.08e-51 179
Msa0050170 MtrunA17_Chr1g0165731 70.370 108 31 1 193 299 1 108 1.41e-50 168
Msa0050170 MtrunA17_Chr3g0113821 30.485 433 273 11 49 466 13 432 1.05e-48 173
Msa0050170 MtrunA17_Chr8g0371821 29.724 434 274 12 47 466 9 425 1.84e-48 172
Msa0050170 MtrunA17_Chr6g0470591 29.340 409 253 13 88 469 63 462 2.03e-41 154
Msa0050170 MtrunA17_Chr2g0283361 28.986 414 281 10 62 466 25 434 2.96e-41 153
Msa0050170 MtrunA17_Chr7g0253501 28.632 475 263 17 41 464 2 451 1.62e-40 151
Msa0050170 MtrunA17_Chr7g0252731 28.218 404 244 13 33 421 11 383 3.01e-39 147
Msa0050170 MtrunA17_Chr7g0253531 27.719 469 275 16 41 464 2 451 1.26e-38 146
Msa0050170 MtrunA17_Chr7g0270771 29.293 297 173 7 37 322 1 271 6.39e-38 139
Msa0050170 MtrunA17_Chr4g0072041 27.617 449 280 14 49 466 22 456 1.12e-37 144
Msa0050170 MtrunA17_Chr7g0253541 27.069 447 268 18 49 454 12 441 1.81e-36 140
Msa0050170 MtrunA17_Chr4g0054081 28.172 465 290 16 33 466 1 452 5.77e-36 139
Msa0050170 MtrunA17_Chr3g0087401 26.034 411 264 10 45 422 6 409 1.31e-35 137
Msa0050170 MtrunA17_Chr3g0106691 27.511 458 280 15 48 469 63 504 2.44e-33 132
Msa0050170 MtrunA17_Chr7g0235531 26.471 442 275 14 51 464 14 433 2.00e-32 128
Msa0050170 MtrunA17_Chr3g0106661 27.731 476 262 17 48 469 17 464 3.31e-32 128
Msa0050170 MtrunA17_Chr2g0311401 27.815 302 197 8 174 462 2 295 4.42e-29 116
Msa0050170 MtrunA17_Chr3g0106721 27.566 341 219 8 48 368 17 349 1.80e-28 117
Msa0050170 MtrunA17_Chr3g0106761 26.634 413 261 14 86 469 4 403 3.43e-28 116
Msa0050170 MtrunA17_Chr3g0106741 27.763 389 239 13 110 469 59 434 1.38e-27 114
Msa0050170 MtrunA17_Chr4g0053081 25.862 406 257 15 78 460 49 433 2.16e-27 114
Msa0050170 MtrunA17_Chr7g0273691 54.945 91 37 2 197 284 1 90 1.52e-26 103
Msa0050170 MtrunA17_Chr4g0053061 24.532 481 316 18 5 460 7 465 1.56e-26 112
Msa0050170 MtrunA17_Chr3g0106711 34.211 190 115 4 48 229 17 204 2.80e-26 107
Msa0050170 MtrunA17_Chr3g0134071 28.211 436 256 19 38 431 4 424 1.64e-25 109
Msa0050170 MtrunA17_Chr4g0053111 26.106 452 278 18 40 460 9 435 2.37e-25 108
Msa0050170 MtrunA17_Chr5g0442701 26.065 399 235 14 93 457 63 435 4.59e-25 107
Msa0050170 MtrunA17_Chr4g0010121 26.633 398 240 14 55 427 70 440 5.29e-25 107
Msa0050170 MtrunA17_Chr4g0010361 26.606 436 259 20 55 460 25 429 5.59e-25 107
Msa0050170 MtrunA17_Chr3g0134091 29.154 319 201 12 55 359 30 337 7.73e-25 107
Msa0050170 MtrunA17_Chr5g0442691 25.490 408 226 14 93 457 86 458 7.84e-25 107
Msa0050170 MtrunA17_Chr8g0359251 26.773 437 252 19 55 460 30 429 1.71e-24 105
Msa0050170 MtrunA17_Chr5g0442721 26.250 400 234 15 93 457 64 437 2.39e-24 105
Msa0050170 MtrunA17_Chr8g0374911 24.887 442 260 18 56 460 52 458 3.50e-24 105
Msa0050170 MtrunA17_Chr4g0053091 24.651 430 261 14 55 460 32 422 6.60e-24 103
Msa0050170 MtrunA17_Chr7g0224131 27.570 428 261 19 55 460 25 425 7.81e-24 103
Msa0050170 MtrunA17_Chr3g0134041 27.295 403 224 17 68 431 44 416 2.94e-23 102
Msa0050170 MtrunA17_Chr3g0125001 27.378 431 267 18 55 467 25 427 4.88e-23 101
Msa0050170 MtrunA17_Chr5g0438701 23.724 392 256 14 47 418 9 377 5.23e-23 101
Msa0050170 MtrunA17_Chr8g0354371 24.654 434 281 15 46 460 22 428 5.84e-23 101
Msa0050170 MtrunA17_Chr8g0374641 26.984 441 249 21 55 460 30 432 6.40e-23 101
Msa0050170 MtrunA17_Chr3g0134061 26.368 402 243 16 68 431 42 428 1.37e-22 100
Msa0050170 MtrunA17_Chr3g0134121 26.067 445 276 19 56 473 31 449 1.56e-22 100
Msa0050170 MtrunA17_Chr5g0438681 24.427 393 251 14 47 418 9 376 2.05e-22 99.8
Msa0050170 MtrunA17_Chr3g0095721 25.432 405 217 14 96 455 72 436 2.59e-22 99.8
Msa0050170 MtrunA17_Chr4g0010331 25.472 424 272 15 55 460 25 422 2.82e-22 99.4
Msa0050170 MtrunA17_Chr4g0010311 25.349 430 271 18 55 460 25 428 4.45e-22 98.6
Msa0050170 MtrunA17_Chr3g0134111 25.738 474 262 20 49 475 21 451 1.34e-20 94.4
Msa0050170 MtrunA17_Chr8g0376891 22.993 461 297 15 47 480 9 438 4.59e-20 92.8
Msa0050170 MtrunA17_Chr4g0010351 28.344 314 196 10 55 353 25 324 1.06e-19 90.9
Msa0050170 MtrunA17_Chr5g0408911 25.564 399 251 15 56 427 35 414 3.28e-19 90.1
Msa0050170 MtrunA17_Chr8g0376901 25.191 393 255 16 47 418 9 383 1.04e-18 88.6
Msa0050170 MtrunA17_Chr7g0273681 65.306 49 17 0 123 171 1 49 1.36e-17 76.6
Msa0050170 MtrunA17_Chr4g0004691 28.221 163 111 2 51 213 14 170 1.72e-17 80.5
Msa0050170 MtrunA17_Chr8g0376911 22.983 409 243 16 47 418 9 382 9.33e-17 82.4
Msa0050170 MtrunA17_Chr7g0252771 27.490 251 166 6 221 462 4 247 1.07e-16 80.1
Msa0050170 MtrunA17_Chr6g0471981 57.812 64 25 1 132 195 1 62 8.38e-16 72.0
Msa0050170 MtrunA17_Chr2g0311411 35.766 137 82 4 49 184 11 142 1.01e-14 71.6
Msa0050170 MtrunA17_Chr5g0414431 62.264 53 15 1 86 138 5 52 1.17e-14 68.2
Msa0050170 MtrunA17_Chr7g0252761 29.677 155 105 3 37 190 12 163 6.44e-14 69.7
Msa0050170 MtrunA17_Chr4g0004701 27.273 198 116 8 285 462 45 234 2.60e-12 66.6
Msa0050170 MtrunA17_Chr1g0169471 35.052 97 55 2 119 214 11 100 4.34e-12 63.2
Msa0050170 MtrunA17_Chr5g0438721 32.000 125 68 5 96 214 9 122 1.01e-11 62.8
Msa0050170 MtrunA17_Chr3g0097841 28.205 156 94 4 281 420 47 200 2.32e-11 64.3
Msa0050170 MtrunA17_Chr7g0273671 66.667 42 14 0 32 73 1 42 2.88e-11 58.5
Msa0050170 MtrunA17_Chr3g0134131 28.395 162 112 1 260 417 122 283 4.18e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050170 AT5G17540.1 59.243 449 171 9 33 474 1 444 0.0 526
Msa0050170 AT3G03480.1 57.562 443 173 11 37 471 15 450 1.84e-169 486
Msa0050170 AT5G41040.2 32.207 444 279 10 32 466 8 438 5.80e-81 258
Msa0050170 AT5G41040.1 32.207 444 279 10 32 466 24 454 1.06e-80 258
Msa0050170 AT5G63560.1 33.409 443 269 11 33 467 1 425 5.40e-79 253
Msa0050170 AT3G48720.1 31.350 437 280 11 33 462 1 424 6.88e-74 240
Msa0050170 AT1G27620.1 30.201 447 281 12 42 476 10 437 2.25e-56 194
Msa0050170 AT3G62160.1 30.197 457 273 16 37 476 1 428 1.60e-54 189
Msa0050170 AT1G65450.1 29.322 457 287 13 32 470 11 449 3.39e-51 181
Msa0050170 AT2G40230.1 33.333 387 234 11 49 420 13 390 3.75e-50 177
Msa0050170 AT1G03390.1 30.193 467 298 16 14 466 3 455 4.52e-50 177
Msa0050170 AT1G28680.1 29.025 441 290 14 48 471 11 445 1.48e-48 173
Msa0050170 AT2G19070.1 29.070 430 264 13 67 466 29 447 5.52e-48 172
Msa0050170 AT5G57840.1 28.409 440 273 11 49 464 11 432 9.14e-48 171
Msa0050170 AT5G48930.1 29.680 438 270 14 49 466 11 430 3.51e-47 169
Msa0050170 AT1G28680.2 31.395 344 222 10 48 381 11 350 1.81e-44 161
Msa0050170 AT3G47170.1 27.310 487 277 17 35 470 6 466 3.68e-43 159
Msa0050170 AT5G07080.1 28.723 470 271 16 33 467 6 446 3.36e-42 156
Msa0050170 AT2G23510.1 28.541 466 284 17 33 469 5 450 2.12e-39 148
Msa0050170 AT2G25150.1 28.758 459 290 16 37 471 9 454 9.48e-39 147
Msa0050170 AT1G78990.1 27.820 399 250 12 94 471 65 446 3.22e-32 128
Msa0050170 AT1G31490.1 26.076 395 246 13 49 419 14 386 1.00e-29 121
Msa0050170 AT5G07860.1 26.846 447 272 15 47 467 24 441 1.71e-27 115
Msa0050170 AT1G65450.3 27.946 297 185 8 190 470 2 285 7.57e-27 110
Msa0050170 AT5G07870.1 26.872 454 263 17 47 460 24 448 5.16e-26 110
Msa0050170 AT1G32910.1 26.420 405 255 15 94 471 63 451 1.21e-25 109
Msa0050170 AT5G42830.1 27.692 455 247 17 47 460 23 436 1.95e-25 108
Msa0050170 AT1G24430.1 24.570 407 255 15 75 462 41 414 2.03e-24 105
Msa0050170 AT3G50270.1 27.119 413 233 15 55 429 30 412 3.17e-24 105
Msa0050170 AT5G07850.1 26.456 412 262 15 47 431 24 421 1.08e-23 103
Msa0050170 AT4G31910.1 27.051 451 276 15 49 462 17 451 3.15e-23 102
Msa0050170 AT3G50280.1 26.382 398 252 17 55 429 28 407 3.83e-23 102
Msa0050170 AT5G38130.1 25.879 398 252 14 55 429 48 425 5.45e-23 102
Msa0050170 AT5G67150.1 25.629 437 265 18 55 462 30 435 8.23e-23 101
Msa0050170 AT3G26040.1 23.485 396 260 14 47 420 9 383 1.99e-22 100
Msa0050170 AT3G50300.1 26.870 361 225 13 96 429 59 407 1.98e-21 97.1
Msa0050170 AT1G24420.2 26.434 401 235 17 47 418 11 380 1.66e-20 94.4
Msa0050170 AT1G24420.1 26.434 401 235 17 47 418 11 380 1.66e-20 94.4
Msa0050170 AT5G16410.1 25.862 348 223 12 94 420 89 422 1.61e-19 91.7
Msa0050170 AT5G47980.1 26.180 466 277 22 47 479 11 442 2.66e-19 90.9
Msa0050170 AT5G67160.1 26.406 409 238 15 90 467 50 426 3.42e-19 90.5
Msa0050170 AT3G30280.1 24.222 450 283 18 38 459 3 422 7.29e-17 83.2
Msa0050170 AT5G23940.1 24.823 423 238 16 93 470 62 449 8.42e-16 80.1
Msa0050170 AT3G50280.2 26.007 273 184 10 170 429 10 277 1.38e-15 78.2
Msa0050170 AT3G50290.1 25.556 270 160 9 170 414 16 269 9.03e-14 72.0
Msa0050170 AT5G47950.1 22.955 440 284 18 38 459 3 405 1.90e-13 72.8
Msa0050170 AT3G23840.1 28.643 199 117 7 112 301 81 263 5.50e-12 68.2
Msa0050170 AT4G15400.1 25.060 415 244 19 96 480 58 435 1.85e-11 66.6

Find 134 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 1_2:+3831627 Msa0050170:CDS
TTCAAACCAACATTAGTTTA+AGG 0.181902 1_2:-3834250 None:intergenic
AATTATACCTTTCCTCATTA+TGG 0.183641 1_2:+3831192 Msa0050170:CDS
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 1_2:-3833638 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1_2:-3831367 None:intergenic
GCATTCAGTTGCGGATTTAA+TGG 0.222413 1_2:+3833897 Msa0050170:CDS
TTTGAGGGTCTTACAAATTC+AGG 0.246276 1_2:-3831250 None:intergenic
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1_2:-3831315 None:intergenic
GGTATTTAGCTCAATTAATA+AGG 0.282791 1_2:-3834353 None:intergenic
TTGATAGTGGTTATTATAGA+AGG 0.302952 1_2:-3831151 None:intergenic
TAAACGAACTTATGATAATA+AGG 0.304041 1_2:-3834553 None:intergenic
CACCTAAGGCACTCATGAAT+TGG 0.305227 1_2:-3833384 None:intergenic
TGAATTTCCTTTGCTATGAT+TGG 0.316077 1_2:+3834269 Msa0050170:three_prime_UTR
GCGATGGGCCATGTCATCTA+AGG 0.318314 1_2:-3833545 None:intergenic
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 1_2:+3831437 Msa0050170:CDS
TAAGGGAATAATTGTTCCTT+TGG 0.330029 1_2:-3833527 None:intergenic
TTGGAGATGTTGACTTTGGT+TGG 0.341202 1_2:+3833989 Msa0050170:CDS
GGTTGGGGAAAAGCTGTATA+TGG 0.341822 1_2:+3834006 Msa0050170:CDS
CCCGTCGCGGTTACAACCGC+TGG 0.344616 1_2:+3833796 Msa0050170:CDS
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1_2:+3831529 Msa0050170:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 1_2:-3834216 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 1_2:+3831354 Msa0050170:CDS
GATGTGACACGTGCTGGATT+TGG 0.363433 1_2:+3833970 Msa0050170:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1_2:+3834095 Msa0050170:CDS
TGGAGATGTTGACTTTGGTT+GGG 0.387463 1_2:+3833990 Msa0050170:CDS
CTGCTGCGTCACACATTGTA+TGG 0.389180 1_2:-3833354 None:intergenic
AACATTAACGAACCTACTAT+TGG 0.395610 1_2:+3834189 Msa0050170:CDS
AAATCCTCACCGCATGCCTT+TGG 0.410833 1_2:+3833647 Msa0050170:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.411133 1_2:-3833520 None:intergenic
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 1_2:-3833694 None:intergenic
AAACTAATGGAAAATCCGTT+AGG 0.419834 1_2:+3833820 Msa0050170:CDS
TCCATTTGCAGGTAGGTTAA+GGG 0.425790 1_2:+3831438 Msa0050170:CDS
TGCGGATTTAATGGTTATCA+AGG 0.430701 1_2:+3833906 Msa0050170:CDS
CCTTAGGTGAAATTTCTTGC+GGG 0.433387 1_2:+3833398 Msa0050170:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 1_2:+3833382 Msa0050170:CDS
TACAACCGCTGGGAAACTAA+TGG 0.437340 1_2:+3833807 Msa0050170:CDS
TCCCTTAACCTACCTGCAAA+TGG 0.437418 1_2:-3831439 None:intergenic
CCAGCGGTTGTAACCGCGAC+GGG 0.438069 1_2:-3833796 None:intergenic
AATGTGTGACGCAGCAGGTT+TGG 0.438562 1_2:+3833360 Msa0050170:CDS
TCACTGTGAATGATAGAGAT+TGG 0.444139 1_2:-3831216 None:intergenic
AGGTCCTGACAGGAAACTTA+TGG 0.445457 1_2:+3831462 Msa0050170:CDS
AGTGCTTAACTCTCCATTGT+TGG 0.450887 1_2:+3831618 Msa0050170:CDS
GAAAGGTATAATTGAAGAAA+GGG 0.453489 1_2:-3831182 None:intergenic
GCATTACCGTAGTAACCATT+TGG 0.454482 1_2:-3833763 None:intergenic
ATATAATGCGCCACATGCAT+TGG 0.460594 1_2:-3831108 None:intergenic
TACTTATAAAATTGTATCAC+TGG 0.463814 1_2:-3831340 None:intergenic
AAGGGTACTAAATTTGATAG+TGG 0.464191 1_2:-3831164 None:intergenic
CACTGTGAATGATAGAGATT+GGG 0.466767 1_2:-3831215 None:intergenic
TTGAGGGTCTTACAAATTCA+GGG 0.476311 1_2:-3831249 None:intergenic
GGAAAGGTATAATTGAAGAA+AGG 0.476453 1_2:-3831183 None:intergenic
CAATCTCACCGGTATGGCAT+AGG 0.484304 1_2:+3833434 Msa0050170:CDS
TGTAGACCTTAAACTAATGT+TGG 0.490789 1_2:+3834244 Msa0050170:exon
TATAATGCGCCACATGCATT+GGG 0.492129 1_2:-3831107 None:intergenic
TTTAATCCACCGTTACCAAA+TGG 0.496653 1_2:+3833748 Msa0050170:CDS
GGATTTGGAGATGTTGACTT+TGG 0.497797 1_2:+3833985 Msa0050170:CDS
AAGTATGATCCAAATATGGC+AGG 0.501582 1_2:+3831358 Msa0050170:CDS
GTGTCTGATGTGACACGTGC+TGG 0.502256 1_2:+3833964 Msa0050170:CDS
TGAGTACATGTTACTCTTGG+TGG 0.504345 1_2:-3833478 None:intergenic
CGAATTGTGGCTACCTCGGT+TGG 0.505273 1_2:-3833583 None:intergenic
AGCTCATCCAAACAAGGAAA+AGG 0.507667 1_2:-3831568 None:intergenic
CGATGAGTACATGTTACTCT+TGG 0.511451 1_2:-3833481 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 1_2:-3834135 None:intergenic
AATAATTGTTCCTTTGGTGT+CGG 0.522248 1_2:-3833521 None:intergenic
TGCCATACCGGTGAGATTGA+AGG 0.523692 1_2:-3833430 None:intergenic
AACTAATGGAAAATCCGTTA+GGG 0.528322 1_2:+3833821 Msa0050170:CDS
GGAGATGTTGACTTTGGTTG+GGG 0.528669 1_2:+3833991 Msa0050170:CDS
AACGATAAGACATTATATGA+TGG 0.532826 1_2:-3834463 None:intergenic
GGAGGAGTTGGTGCTATACC+TGG 0.535378 1_2:+3834042 Msa0050170:CDS
CACACATTGTATGGTTTAGA+CGG 0.536195 1_2:-3833345 None:intergenic
CATGTATTCTTGAGTTACAT+CGG 0.537828 1_2:-3833875 None:intergenic
GCACCAACTCCTCCTTTAGC+TGG 0.539177 1_2:-3834033 None:intergenic
GTATATGGTGGACCAGCTAA+AGG 0.539427 1_2:+3834021 Msa0050170:CDS
GCCTTAGGTGAAATTTCTTG+CGG 0.540414 1_2:+3833397 Msa0050170:CDS
ATTATTGCAGCAGCACTATG+TGG 0.541966 1_2:+3831079 None:intergenic
CTCTTTGACGAACTTCTCCA+TGG 0.543009 1_2:-3834145 None:intergenic
AATCTCACCGGTATGGCATA+GGG 0.546127 1_2:+3833435 Msa0050170:CDS
TCCACCATAAGTTTCCTGTC+AGG 0.550793 1_2:-3831466 None:intergenic
GGTTAAGGGAAGGTCCTGAC+AGG 0.552476 1_2:+3831452 Msa0050170:CDS
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 1_2:+3834128 Msa0050170:CDS
AGAAGCTCCCTATGCCATAC+CGG 0.552944 1_2:-3833442 None:intergenic
GGACCAGCTAAAGGAGGAGT+TGG 0.553044 1_2:+3834030 Msa0050170:CDS
ATAGGGAGCTTCTAAATGCA+AGG 0.554177 1_2:+3833452 Msa0050170:CDS
CAGATATAGATGACCAAGAA+GGG 0.559168 1_2:+3831302 Msa0050170:CDS
ATAGAGATTGGGCCATAATG+AGG 0.559544 1_2:-3831204 None:intergenic
TTTATTATCCATTTGCAGGT+AGG 0.559740 1_2:+3831431 Msa0050170:CDS
AGTGGTTATTATAGAAGGTA+CGG 0.560178 1_2:-3831146 None:intergenic
ATTAACGAACCTACTATTGG+TGG 0.562257 1_2:+3834192 Msa0050170:CDS
TCAGATATAGATGACCAAGA+AGG 0.565827 1_2:+3831301 Msa0050170:CDS
AGCGCGAATTGTGGCTACCT+CGG 0.567132 1_2:-3833587 None:intergenic
AACCTTCAATCTCACCGGTA+TGG 0.568331 1_2:+3833428 Msa0050170:CDS
CCCGCAAGAAATTTCACCTA+AGG 0.570019 1_2:-3833398 None:intergenic
CTCTATCATTCACAGTGAAG+AGG 0.571132 1_2:+3831221 Msa0050170:CDS
CCGTCGCGGTTACAACCGCT+GGG 0.572108 1_2:+3833797 Msa0050170:CDS
AGTATGATCCAAATATGGCA+GGG 0.572294 1_2:+3831359 Msa0050170:CDS
AACTCTAGTGCATACCCTAA+CGG 0.573134 1_2:-3833835 None:intergenic
CCGTTACCAAATGGTTACTA+CGG 0.574521 1_2:+3833757 Msa0050170:CDS
AGAATACATGCATTCAGTTG+CGG 0.574989 1_2:+3833888 Msa0050170:CDS
AATTATTCCCTTAGATGACA+TGG 0.576689 1_2:+3833537 Msa0050170:CDS
CATACAATGTGTGACGCAGC+AGG 0.579280 1_2:+3833355 Msa0050170:CDS
CGATTGTACGACAACGCCAA+AGG 0.587072 1_2:-3833663 None:intergenic
AATACCTGAATCACCAACAA+TGG 0.589517 1_2:-3831631 None:intergenic
ACATTAGTTTAAGGTCTACA+AGG 0.590944 1_2:-3834241 None:intergenic
CGATGGGCCATGTCATCTAA+GGG 0.603002 1_2:-3833544 None:intergenic
AAGGAAGAAACAATGAAACT+AGG 0.603955 1_2:-3834222 None:intergenic
TTATTGCAGCAGCACTATGT+GGG 0.605382 1_2:+3831080 None:intergenic
GCGGATTTAATGGTTATCAA+GGG 0.606067 1_2:+3833907 Msa0050170:CDS
ATCTGCATTGTCAATGCTCG+TGG 0.609350 1_2:+3833721 Msa0050170:CDS
CCGTAGTAACCATTTGGTAA+CGG 0.610295 1_2:-3833757 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 1_2:-3834060 None:intergenic
TCTCACACCAATCATAGCAA+AGG 0.613641 1_2:-3834276 None:intergenic
GAACGAACCTTCAATCTCAC+CGG 0.615082 1_2:+3833423 Msa0050170:CDS
TGGGAGAAGAGCGCGAATTG+TGG 0.616656 1_2:-3833596 None:intergenic
CTTCTAACCACAGTAAAATG+TGG 0.618528 1_2:-3833934 None:intergenic
AAAAGTAGCTCATCCAAACA+AGG 0.619216 1_2:-3831574 None:intergenic
TGAGGGTCTTACAAATTCAG+GGG 0.622901 1_2:-3831248 None:intergenic
CCCAGCGGTTGTAACCGCGA+CGG 0.625128 1_2:-3833797 None:intergenic
ATGGTGGATTGTAATGATGA+AGG 0.626655 1_2:+3831481 Msa0050170:CDS
GATTGGGCCATAATGAGGAA+AGG 0.628876 1_2:-3831199 None:intergenic
GAACAAGTTCCCGACACCAA+AGG 0.634936 1_2:+3833511 Msa0050170:CDS
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 1_2:-3834123 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.640809 1_2:-3831565 None:intergenic
TAGGGAGCTTCTAAATGCAA+GGG 0.644953 1_2:+3833453 Msa0050170:CDS
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 1_2:+3831442 Msa0050170:CDS
TAGTAACCATTTGGTAACGG+TGG 0.653193 1_2:-3833754 None:intergenic
TAGGTAACACGTCTCAAGTG+TGG 0.654765 1_2:+3833304 Msa0050170:intron
AACGCCAAAGGCATGCGGTG+AGG 0.656317 1_2:-3833651 None:intergenic
TCCTGACAGGAAACTTATGG+TGG 0.657173 1_2:+3831465 Msa0050170:CDS
TGGGGAAAAGCTGTATATGG+TGG 0.663720 1_2:+3834009 Msa0050170:CDS
TATGGTGGACCAGCTAAAGG+AGG 0.665823 1_2:+3834024 Msa0050170:CDS
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1_2:-3831604 None:intergenic
GTGGGTTATCCCAATGCATG+TGG 0.683744 1_2:+3831098 Msa0050170:exon
GTTGCAAAAGATAATCACGA+TGG 0.685988 1_2:+3834312 Msa0050170:three_prime_UTR
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1_2:+3833307 Msa0050170:CDS
ACGACAACGCCAAAGGCATG+CGG 0.713965 1_2:-3833656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCTTTTGAAAAATTAA+CGG - chr1_2:3831832-3831851 None:intergenic 10.0%
!! AAATAGATAACTTTATATTA+TGG + chr1_2:3831847-3831866 Msa0050170:intron 10.0%
!! AAATAGATAACTTTATATTA+TGG + chr1_2:3831847-3831866 Msa0050170:intron 10.0%
!!! ATTATTTTAGGTTATTATTT+TGG - chr1_2:3832423-3832442 None:intergenic 10.0%
!!! TAACCTAAAATAATTTTTTA+AGG + chr1_2:3832429-3832448 Msa0050170:intron 10.0%
!!! TTTCCTTAAAAAATTATTTT+AGG - chr1_2:3832435-3832454 None:intergenic 10.0%
!!! ATTATCATTTTTCATTTTTT+TGG + chr1_2:3832608-3832627 Msa0050170:intron 10.0%
!!! TTATCATTTTTCATTTTTTT+GGG + chr1_2:3832609-3832628 Msa0050170:intron 10.0%
!! TATATTTCATAAATTTACAG+TGG + chr1_2:3831699-3831718 Msa0050170:intron 15.0%
!!! CTATTTCTTTTGAAAATTAA+CGG - chr1_2:3832070-3832089 None:intergenic 15.0%
!!! ATTTTGGACTTTTTTTTTTT+TGG + chr1_2:3832201-3832220 Msa0050170:intron 15.0%
!!! TTTTATGCAATTAAATAAGA+TGG - chr1_2:3832534-3832553 None:intergenic 15.0%
!! TATTTAATTGCATAAAAAAC+TGG + chr1_2:3832537-3832556 Msa0050170:intron 15.0%
!!! TATCATTTTTCATTTTTTTG+GGG + chr1_2:3832610-3832629 Msa0050170:intron 15.0%
!! TCAAAAAAAAAAAAAAAGAG+TGG + chr1_2:3832951-3832970 Msa0050170:intron 15.0%
!! CAAAAAAAAAAAAAAAGAGT+GGG + chr1_2:3832952-3832971 Msa0050170:intron 15.0%
!! TACTTATAAAATTGTATCAC+TGG - chr1_2:3831343-3831362 None:intergenic 20.0%
!! TTATAAGTATGATCCAAATA+TGG + chr1_2:3831354-3831373 Msa0050170:CDS 20.0%
!!! CTTTTCTAATAATATCAACA+GGG - chr1_2:3831390-3831409 None:intergenic 20.0%
!! TGAAACAATATTTAAATCCT+AGG + chr1_2:3832347-3832366 Msa0050170:intron 20.0%
!!! ATCATTTTTCATTTTTTTGG+GGG + chr1_2:3832611-3832630 Msa0050170:intron 20.0%
!! CTTACATGTAAATTTGTAAA+TGG + chr1_2:3832636-3832655 Msa0050170:intron 20.0%
!!! TGGCACATATATTTTTTTAA+AGG + chr1_2:3832656-3832675 Msa0050170:intron 20.0%
!! AAAAAAATTTAATTCAGCTG+AGG + chr1_2:3832874-3832893 Msa0050170:intron 20.0%
!! TAGACAAAATTTATACATCA+CGG + chr1_2:3833124-3833143 Msa0050170:intron 20.0%
!!! AACTTTAACAACATTTTTCA+CGG - chr1_2:3834378-3834397 None:intergenic 20.0%
!! TAAACGAACTTATGATAATA+AGG - chr1_2:3834556-3834575 None:intergenic 20.0%
!!! TTGATAGTGGTTATTATAGA+AGG - chr1_2:3831154-3831173 None:intergenic 25.0%
!! GAAAGGTATAATTGAAGAAA+GGG - chr1_2:3831185-3831204 None:intergenic 25.0%
! AATTATACCTTTCCTCATTA+TGG + chr1_2:3831192-3831211 Msa0050170:CDS 25.0%
!! GCTTTTCTAATAATATCAAC+AGG - chr1_2:3831391-3831410 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG + chr1_2:3831529-3831548 Msa0050170:CDS 25.0%
! ATATAGTACAAGTGTATGTA+CGG - chr1_2:3831756-3831775 None:intergenic 25.0%
! ATATAGTACGAGTATATGTT+GGG - chr1_2:3831802-3831821 None:intergenic 25.0%
! AATATAGTACGAGTATATGT+TGG - chr1_2:3831803-3831822 None:intergenic 25.0%
! CATATACTCGTACTATATTA+AGG + chr1_2:3831804-3831823 Msa0050170:intron 25.0%
!!! AACTTAAGTTGGTTAGATTT+TGG + chr1_2:3832185-3832204 Msa0050170:intron 25.0%
!!! GACTTTTTTTTTTTTGGTAG+TGG + chr1_2:3832207-3832226 Msa0050170:intron 25.0%
! TTTCTATCGAATAGAATCTT+AGG + chr1_2:3832394-3832413 Msa0050170:intron 25.0%
! ATGCAATTAAATAAGATGGT+AGG - chr1_2:3832530-3832549 None:intergenic 25.0%
!! GTTCACAAACAAAATTTTAC+AGG + chr1_2:3832728-3832747 Msa0050170:intron 25.0%
!!! GCAAGCACAAATAATTTTTT+GGG + chr1_2:3832750-3832769 Msa0050170:intron 25.0%
! AAAAAAAAAAAAAGAGTGGG+TGG + chr1_2:3832955-3832974 Msa0050170:intron 25.0%
! AAAAAAAAAAAAGAGTGGGT+GGG + chr1_2:3832956-3832975 Msa0050170:intron 25.0%
! ATACCTTTCAAAAATGCTAA+AGG + chr1_2:3834081-3834100 Msa0050170:CDS 25.0%
!! TTCAAACCAACATTAGTTTA+AGG - chr1_2:3834253-3834272 None:intergenic 25.0%
!! GGTATTTAGCTCAATTAATA+AGG - chr1_2:3834356-3834375 None:intergenic 25.0%
!! ACTTTAACAACATTTTTCAC+GGG - chr1_2:3834377-3834396 None:intergenic 25.0%
! AACGATAAGACATTATATGA+TGG - chr1_2:3834466-3834485 None:intergenic 25.0%
AGTGGTTATTATAGAAGGTA+CGG - chr1_2:3831149-3831168 None:intergenic 30.0%
!! AAGGGTACTAAATTTGATAG+TGG - chr1_2:3831167-3831186 None:intergenic 30.0%
! GGAAAGGTATAATTGAAGAA+AGG - chr1_2:3831186-3831205 None:intergenic 30.0%
! GAGAGTAATTTTACTTCATG+AGG - chr1_2:3831283-3831302 None:intergenic 30.0%
!! GTGTTTTATTATCCATTTGC+AGG + chr1_2:3831427-3831446 Msa0050170:CDS 30.0%
TTTATTATCCATTTGCAGGT+AGG + chr1_2:3831431-3831450 Msa0050170:CDS 30.0%
AACTTAGACACAACTTAAGT+TGG + chr1_2:3832174-3832193 Msa0050170:intron 30.0%
!!! TTTTTTTTTTTGGTAGTGGC+TGG + chr1_2:3832211-3832230 Msa0050170:intron 30.0%
!!! TTTTTTTTTTGGTAGTGGCT+GGG + chr1_2:3832212-3832231 Msa0050170:intron 30.0%
! ACACTTAGATTTTGGACTAA+TGG + chr1_2:3832299-3832318 Msa0050170:intron 30.0%
!!! GGCAAGCACAAATAATTTTT+TGG + chr1_2:3832749-3832768 Msa0050170:intron 30.0%
! TTGATTGAAACGACACATTT+TGG - chr1_2:3832983-3833002 None:intergenic 30.0%
!! CTTGAATTTTGACCATTTGT+AGG + chr1_2:3833285-3833304 Msa0050170:intron 30.0%
! AATAATTGTTCCTTTGGTGT+CGG - chr1_2:3833524-3833543 None:intergenic 30.0%
TAAGGGAATAATTGTTCCTT+TGG - chr1_2:3833530-3833549 None:intergenic 30.0%
AATTATTCCCTTAGATGACA+TGG + chr1_2:3833537-3833556 Msa0050170:CDS 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG - chr1_2:3833627-3833646 None:intergenic 30.0%
AAACTAATGGAAAATCCGTT+AGG + chr1_2:3833820-3833839 Msa0050170:CDS 30.0%
AACTAATGGAAAATCCGTTA+GGG + chr1_2:3833821-3833840 Msa0050170:CDS 30.0%
CATGTATTCTTGAGTTACAT+CGG - chr1_2:3833878-3833897 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG - chr1_2:3834087-3834106 None:intergenic 30.0%
TTTCAAAAATGCTAAAGGAG+AGG + chr1_2:3834086-3834105 Msa0050170:CDS 30.0%
AACATTAACGAACCTACTAT+TGG + chr1_2:3834189-3834208 Msa0050170:CDS 30.0%
! GAAACAATGAAACTAGGTTT+TGG - chr1_2:3834219-3834238 None:intergenic 30.0%
AAGGAAGAAACAATGAAACT+AGG - chr1_2:3834225-3834244 None:intergenic 30.0%
! ACATTAGTTTAAGGTCTACA+AGG - chr1_2:3834244-3834263 None:intergenic 30.0%
TGTAGACCTTAAACTAATGT+TGG + chr1_2:3834244-3834263 Msa0050170:exon 30.0%
! TGAATTTCCTTTGCTATGAT+TGG + chr1_2:3834269-3834288 Msa0050170:three_prime_UTR 30.0%
CACTGTGAATGATAGAGATT+GGG - chr1_2:3831218-3831237 None:intergenic 35.0%
TCACTGTGAATGATAGAGAT+TGG - chr1_2:3831219-3831238 None:intergenic 35.0%
TTGAGGGTCTTACAAATTCA+GGG - chr1_2:3831252-3831271 None:intergenic 35.0%
TTTGAGGGTCTTACAAATTC+AGG - chr1_2:3831253-3831272 None:intergenic 35.0%
!!! TCATGAGGTGTTTGTTTTGA+GGG - chr1_2:3831268-3831287 None:intergenic 35.0%
!!! TTCATGAGGTGTTTGTTTTG+AGG - chr1_2:3831269-3831288 None:intergenic 35.0%
TCAGATATAGATGACCAAGA+AGG + chr1_2:3831301-3831320 Msa0050170:CDS 35.0%
CAGATATAGATGACCAAGAA+GGG + chr1_2:3831302-3831321 Msa0050170:CDS 35.0%
TTTGAAAACGTAACCCTTCT+TGG - chr1_2:3831318-3831337 None:intergenic 35.0%
AAGTATGATCCAAATATGGC+AGG + chr1_2:3831358-3831377 Msa0050170:CDS 35.0%
AGTATGATCCAAATATGGCA+GGG + chr1_2:3831359-3831378 Msa0050170:CDS 35.0%
!! ATGGTGGATTGTAATGATGA+AGG + chr1_2:3831481-3831500 Msa0050170:CDS 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG + chr1_2:3831498-3831517 Msa0050170:CDS 35.0%
AAAAGTAGCTCATCCAAACA+AGG - chr1_2:3831577-3831596 None:intergenic 35.0%
AATACCTGAATCACCAACAA+TGG - chr1_2:3831634-3831653 None:intergenic 35.0%
!!! TTTTTTTTTGGTAGTGGCTG+GGG + chr1_2:3832213-3832232 Msa0050170:intron 35.0%
GACAATGCATAAAGTATGCA+AGG - chr1_2:3832252-3832271 None:intergenic 35.0%
! TGCAAGACACTTTTATTCCT+AGG - chr1_2:3832367-3832386 None:intergenic 35.0%
AAATGATTCAAGTGAGGTCA+AGG - chr1_2:3832822-3832841 None:intergenic 35.0%
CTACACAAATGATTCAAGTG+AGG - chr1_2:3832828-3832847 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG + chr1_2:3832826-3832845 Msa0050170:intron 35.0%
! TCTTTGTTTCCTAGAAAGAG+TGG + chr1_2:3832922-3832941 Msa0050170:intron 35.0%
! CTTTGTTTCCTAGAAAGAGT+GGG + chr1_2:3832923-3832942 Msa0050170:intron 35.0%
TTTGTTTCCTAGAAAGAGTG+GGG + chr1_2:3832924-3832943 Msa0050170:intron 35.0%
AGACACACACTAGAGTTAAA+AGG - chr1_2:3833022-3833041 None:intergenic 35.0%
CACAACAAGTGTTTCATTTG+TGG + chr1_2:3833209-3833228 Msa0050170:intron 35.0%
CACACATTGTATGGTTTAGA+CGG - chr1_2:3833348-3833367 None:intergenic 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG - chr1_2:3833523-3833542 None:intergenic 35.0%
!!! ATTGTTTTTGTTGGTGAGGT+GGG - chr1_2:3833618-3833637 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG - chr1_2:3833622-3833641 None:intergenic 35.0%
TTTAATCCACCGTTACCAAA+TGG + chr1_2:3833748-3833767 Msa0050170:CDS 35.0%
!! ATTTTCCATTAGTTTCCCAG+CGG - chr1_2:3833815-3833834 None:intergenic 35.0%
AGAATACATGCATTCAGTTG+CGG + chr1_2:3833888-3833907 Msa0050170:CDS 35.0%
TGCGGATTTAATGGTTATCA+AGG + chr1_2:3833906-3833925 Msa0050170:CDS 35.0%
GCGGATTTAATGGTTATCAA+GGG + chr1_2:3833907-3833926 Msa0050170:CDS 35.0%
CTTCTAACCACAGTAAAATG+TGG - chr1_2:3833937-3833956 None:intergenic 35.0%
ATATAAAAGCTAGCAACACC+AGG - chr1_2:3834063-3834082 None:intergenic 35.0%
AAAAATGCTAAAGGAGAGGA+AGG + chr1_2:3834090-3834109 Msa0050170:CDS 35.0%
ATTAACGAACCTACTATTGG+TGG + chr1_2:3834192-3834211 Msa0050170:CDS 35.0%
GTTGCAAAAGATAATCACGA+TGG + chr1_2:3834312-3834331 Msa0050170:three_prime_UTR 35.0%
TATAATGCGCCACATGCATT+GGG - chr1_2:3831110-3831129 None:intergenic 40.0%
ATATAATGCGCCACATGCAT+TGG - chr1_2:3831111-3831130 None:intergenic 40.0%
ATAGAGATTGGGCCATAATG+AGG - chr1_2:3831207-3831226 None:intergenic 40.0%
CTCTATCATTCACAGTGAAG+AGG + chr1_2:3831221-3831240 Msa0050170:CDS 40.0%
TGAGGGTCTTACAAATTCAG+GGG - chr1_2:3831251-3831270 None:intergenic 40.0%
ATCCATTTGCAGGTAGGTTA+AGG + chr1_2:3831437-3831456 Msa0050170:CDS 40.0%
TCCATTTGCAGGTAGGTTAA+GGG + chr1_2:3831438-3831457 Msa0050170:CDS 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG + chr1_2:3831561-3831580 Msa0050170:CDS 40.0%
TCATCCAAACAAGGAAAAGG+AGG - chr1_2:3831568-3831587 None:intergenic 40.0%
AGCTCATCCAAACAAGGAAA+AGG - chr1_2:3831571-3831590 None:intergenic 40.0%
!!! GAGCTACTTTTTGATGTTCC+TGG + chr1_2:3831586-3831605 Msa0050170:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG - chr1_2:3831607-3831626 None:intergenic 40.0%
AGTGCTTAACTCTCCATTGT+TGG + chr1_2:3831618-3831637 Msa0050170:CDS 40.0%
CAAGTGTATGTACGGATTTG+CGG - chr1_2:3831748-3831767 None:intergenic 40.0%
! TGAGTTTAGCTCAGTTGGTT+GGG - chr1_2:3832274-3832293 None:intergenic 40.0%
! TCACGAGGACACTTAGATTT+TGG + chr1_2:3832291-3832310 Msa0050170:intron 40.0%
TCACGGATCAAGCTATTACA+TGG + chr1_2:3833141-3833160 Msa0050170:intron 40.0%
GGATCAAGCTATTACATGGT+TGG + chr1_2:3833145-3833164 Msa0050170:intron 40.0%
TGAGACGTGTTACCTACAAA+TGG - chr1_2:3833300-3833319 None:intergenic 40.0%
GCCTTAGGTGAAATTTCTTG+CGG + chr1_2:3833397-3833416 Msa0050170:CDS 40.0%
CCTTAGGTGAAATTTCTTGC+GGG + chr1_2:3833398-3833417 Msa0050170:CDS 40.0%
ATAGGGAGCTTCTAAATGCA+AGG + chr1_2:3833452-3833471 Msa0050170:CDS 40.0%
TAGGGAGCTTCTAAATGCAA+GGG + chr1_2:3833453-3833472 Msa0050170:CDS 40.0%
TGAGTACATGTTACTCTTGG+TGG - chr1_2:3833481-3833500 None:intergenic 40.0%
CGATGAGTACATGTTACTCT+TGG - chr1_2:3833484-3833503 None:intergenic 40.0%
ACCGAAGAAAAAAGAGCGAT+GGG - chr1_2:3833563-3833582 None:intergenic 40.0%
!!! GATTGTTTTTGTTGGTGAGG+TGG - chr1_2:3833619-3833638 None:intergenic 40.0%
!! TAGTAACCATTTGGTAACGG+TGG - chr1_2:3833757-3833776 None:intergenic 40.0%
CCGTAGTAACCATTTGGTAA+CGG - chr1_2:3833760-3833779 None:intergenic 40.0%
CCGTTACCAAATGGTTACTA+CGG + chr1_2:3833757-3833776 Msa0050170:CDS 40.0%
GCATTACCGTAGTAACCATT+TGG - chr1_2:3833766-3833785 None:intergenic 40.0%
AACTCTAGTGCATACCCTAA+CGG - chr1_2:3833838-3833857 None:intergenic 40.0%
GCATTCAGTTGCGGATTTAA+TGG + chr1_2:3833897-3833916 Msa0050170:CDS 40.0%
!! GGATTTGGAGATGTTGACTT+TGG + chr1_2:3833985-3834004 Msa0050170:CDS 40.0%
!! TTGGAGATGTTGACTTTGGT+TGG + chr1_2:3833989-3834008 Msa0050170:CDS 40.0%
!! TGGAGATGTTGACTTTGGTT+GGG + chr1_2:3833990-3834009 Msa0050170:CDS 40.0%
TCTCACACCAATCATAGCAA+AGG - chr1_2:3834279-3834298 None:intergenic 40.0%
GATTGGGCCATAATGAGGAA+AGG - chr1_2:3831202-3831221 None:intergenic 45.0%
TCCCTTAACCTACCTGCAAA+TGG - chr1_2:3831442-3831461 None:intergenic 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG + chr1_2:3831442-3831461 Msa0050170:CDS 45.0%
AGGTCCTGACAGGAAACTTA+TGG + chr1_2:3831462-3831481 Msa0050170:CDS 45.0%
TCCTGACAGGAAACTTATGG+TGG + chr1_2:3831465-3831484 Msa0050170:CDS 45.0%
TCCACCATAAGTTTCCTGTC+AGG - chr1_2:3831469-3831488 None:intergenic 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG + chr1_2:3831627-3831646 Msa0050170:CDS 45.0%
CGAGTATATGTTGGGATGAG+TGG - chr1_2:3831794-3831813 None:intergenic 45.0%
CATAAAGTATGCAAGGTCCG+AGG - chr1_2:3832245-3832264 None:intergenic 45.0%
! GTGAGTTTAGCTCAGTTGGT+TGG - chr1_2:3832275-3832294 None:intergenic 45.0%
TGACAAACCCCACTCTTTCT+AGG - chr1_2:3832934-3832953 None:intergenic 45.0%
TAGGTAACACGTCTCAAGTG+TGG + chr1_2:3833304-3833323 Msa0050170:intron 45.0%
GTCCAATTCATGAGTGCCTT+AGG + chr1_2:3833382-3833401 Msa0050170:CDS 45.0%
! CACCTAAGGCACTCATGAAT+TGG - chr1_2:3833387-3833406 None:intergenic 45.0%
CCCGCAAGAAATTTCACCTA+AGG - chr1_2:3833401-3833420 None:intergenic 45.0%
GAACGAACCTTCAATCTCAC+CGG + chr1_2:3833423-3833442 Msa0050170:CDS 45.0%
AACCTTCAATCTCACCGGTA+TGG + chr1_2:3833428-3833447 Msa0050170:CDS 45.0%
AATCTCACCGGTATGGCATA+GGG + chr1_2:3833435-3833454 Msa0050170:CDS 45.0%
!!! GCCCATCGCTCTTTTTTCTT+CGG + chr1_2:3833559-3833578 Msa0050170:CDS 45.0%
GACCGAAGAAAAAAGAGCGA+TGG - chr1_2:3833564-3833583 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG + chr1_2:3833570-3833589 Msa0050170:CDS 45.0%
TGCGGTGAGGATTTCGAAAT+TGG - chr1_2:3833641-3833660 None:intergenic 45.0%
ATCTGCATTGTCAATGCTCG+TGG + chr1_2:3833721-3833740 Msa0050170:CDS 45.0%
TACAACCGCTGGGAAACTAA+TGG + chr1_2:3833807-3833826 Msa0050170:CDS 45.0%
! GGGTAGACCACATTTTACTG+TGG + chr1_2:3833927-3833946 Msa0050170:CDS 45.0%
!! GGAGATGTTGACTTTGGTTG+GGG + chr1_2:3833991-3834010 Msa0050170:CDS 45.0%
GGTTGGGGAAAAGCTGTATA+TGG + chr1_2:3834006-3834025 Msa0050170:CDS 45.0%
TGGGGAAAAGCTGTATATGG+TGG + chr1_2:3834009-3834028 Msa0050170:CDS 45.0%
!! GTATATGGTGGACCAGCTAA+AGG + chr1_2:3834021-3834040 Msa0050170:CDS 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG + chr1_2:3834095-3834114 Msa0050170:CDS 45.0%
GCTTGAGCTGGTAAACAAAG+TGG - chr1_2:3834126-3834145 None:intergenic 45.0%
TTGTTTACCAGCTCAAGCCA+TGG + chr1_2:3834128-3834147 Msa0050170:CDS 45.0%
CTCTTTGACGAACTTCTCCA+TGG - chr1_2:3834148-3834167 None:intergenic 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG - chr1_2:3834204-3834223 None:intergenic 45.0%
!! ATAAATTAATTAGTTAAAAT+TGG - chr1_2:3833236-3833255 None:intergenic 5.0%
! GTGGGTTATCCCAATGCATG+TGG + chr1_2:3831098-3831117 Msa0050170:exon 50.0%
GGGTCTTTCCCTGCCATATT+TGG - chr1_2:3831370-3831389 None:intergenic 50.0%
!!! TTTTGGTAGTGGCTGGGGTT+TGG + chr1_2:3832218-3832237 Msa0050170:intron 50.0%
! CCTCGTGAGTTTAGCTCAGT+TGG - chr1_2:3832279-3832298 None:intergenic 50.0%
CCAACTGAGCTAAACTCACG+AGG + chr1_2:3832276-3832295 Msa0050170:intron 50.0%
GTAACACGTCTCAAGTGTGG+TGG + chr1_2:3833307-3833326 Msa0050170:CDS 50.0%
CTGCTGCGTCACACATTGTA+TGG - chr1_2:3833357-3833376 None:intergenic 50.0%
CATACAATGTGTGACGCAGC+AGG + chr1_2:3833355-3833374 Msa0050170:CDS 50.0%
AATGTGTGACGCAGCAGGTT+TGG + chr1_2:3833360-3833379 Msa0050170:CDS 50.0%
TGCCATACCGGTGAGATTGA+AGG - chr1_2:3833433-3833452 None:intergenic 50.0%
CAATCTCACCGGTATGGCAT+AGG + chr1_2:3833434-3833453 Msa0050170:CDS 50.0%
AGAAGCTCCCTATGCCATAC+CGG - chr1_2:3833445-3833464 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG + chr1_2:3833511-3833530 Msa0050170:CDS 50.0%
CGATGGGCCATGTCATCTAA+GGG - chr1_2:3833547-3833566 None:intergenic 50.0%
AAATCCTCACCGCATGCCTT+TGG + chr1_2:3833647-3833666 Msa0050170:CDS 50.0%
CGATTGTACGACAACGCCAA+AGG - chr1_2:3833666-3833685 None:intergenic 50.0%
CGAACTTCTTCGTCAGTGTC+TGG - chr1_2:3833697-3833716 None:intergenic 50.0%
GATGTGACACGTGCTGGATT+TGG + chr1_2:3833970-3833989 Msa0050170:CDS 50.0%
!! TATGGTGGACCAGCTAAAGG+AGG + chr1_2:3834024-3834043 Msa0050170:CDS 50.0%
AACTTCTCCATGGCTTGAGC+TGG - chr1_2:3834138-3834157 None:intergenic 50.0%
GGTTAAGGGAAGGTCCTGAC+AGG + chr1_2:3831452-3831471 Msa0050170:CDS 55.0%
GCGATGGGCCATGTCATCTA+AGG - chr1_2:3833548-3833567 None:intergenic 55.0%
CGAATTGTGGCTACCTCGGT+TGG - chr1_2:3833586-3833605 None:intergenic 55.0%
AGCGCGAATTGTGGCTACCT+CGG - chr1_2:3833590-3833609 None:intergenic 55.0%
! TGGGAGAAGAGCGCGAATTG+TGG - chr1_2:3833599-3833618 None:intergenic 55.0%
! ACGACAACGCCAAAGGCATG+CGG - chr1_2:3833659-3833678 None:intergenic 55.0%
! TGCTTTTGCGTTTCCCGTCG+CGG + chr1_2:3833783-3833802 Msa0050170:CDS 55.0%
GTGTCTGATGTGACACGTGC+TGG + chr1_2:3833964-3833983 Msa0050170:CDS 55.0%
GGACCAGCTAAAGGAGGAGT+TGG + chr1_2:3834030-3834049 Msa0050170:CDS 55.0%
GCACCAACTCCTCCTTTAGC+TGG - chr1_2:3834036-3834055 None:intergenic 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG + chr1_2:3834042-3834061 Msa0050170:CDS 55.0%
AGTGGCTGGGGTTTGGACCT+CGG + chr1_2:3832225-3832244 Msa0050170:intron 60.0%
! AACGCCAAAGGCATGCGGTG+AGG - chr1_2:3833654-3833673 None:intergenic 60.0%
CCAGCGGTTGTAACCGCGAC+GGG - chr1_2:3833799-3833818 None:intergenic 65.0%
CCCAGCGGTTGTAACCGCGA+CGG - chr1_2:3833800-3833819 None:intergenic 65.0%
CCGTCGCGGTTACAACCGCT+GGG + chr1_2:3833797-3833816 Msa0050170:CDS 65.0%
CCCGTCGCGGTTACAACCGC+TGG + chr1_2:3833796-3833815 Msa0050170:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3831082 3834579 3831082 ID=Msa0050170;Name=Msa0050170
chr1_2 mRNA 3831082 3834579 3831082 ID=Msa0050170-mRNA-1;Parent=Msa0050170;Name=Msa0050170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=33|1|1|1|1|1|2|331|491
chr1_2 exon 3831082 3831648 3831082 ID=Msa0050170-mRNA-1:exon:975;Parent=Msa0050170-mRNA-1
chr1_2 exon 3833307 3834579 3833307 ID=Msa0050170-mRNA-1:exon:976;Parent=Msa0050170-mRNA-1
chr1_2 five_prime_UTR 3831082 3831114 3831082 ID=Msa0050170-mRNA-1:five_prime_utr;Parent=Msa0050170-mRNA-1
chr1_2 CDS 3831115 3831648 3831115 ID=Msa0050170-mRNA-1:cds;Parent=Msa0050170-mRNA-1
chr1_2 CDS 3833307 3834248 3833307 ID=Msa0050170-mRNA-1:cds;Parent=Msa0050170-mRNA-1
chr1_2 three_prime_UTR 3834249 3834579 3834249 ID=Msa0050170-mRNA-1:three_prime_utr;Parent=Msa0050170-mRNA-1
Gene Sequence

>Msa0050170

ATGTGGCGCATTATATATACACTTGCATATACCGTACCTTCTATAATAACCACTATCAAATTTAGTACCCTTTCTTCAATTATACCTTTCCTCATTATGGCCCAATCTCTATCATTCACAGTGAAGAGGCATGCCCCTGAATTTGTAAGACCCTCAAAACAAACACCTCATGAAGTAAAATTACTCTCAGATATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGGTTAAGGGAAGGTCCTGACAGGAAACTTATGGTGGATTGTAATGATGAAGGTGTTTTGTTCATTGAGGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTACTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTCCGTCTAAACCATACAATGTGTGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGGATGAACGAACCTTCAATCTCACCGGTATGGCATAGGGAGCTTCTAAATGCAAGGGATCCACCAAGAGTAACATGTACTCATCGTGAATATGAACAAGTTCCCGACACCAAAGGAACAATTATTCCCTTAGATGACATGGCCCATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCCACAATTCGCGCTCTTCTCCCACCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCATTACAACCAGACACTGACGAAGAAGTTCGCATAATCTGCATTGTCAATGCTCGTGGCAAGTTTAATCCACCGTTACCAAATGGTTACTACGGTAATGCTTTTGCGTTTCCCGTCGCGGTTACAACCGCTGGGAAACTAATGGAAAATCCGTTAGGGTATGCACTAGAGTTAGTTAAAAAAGCAAAATCCGATGTAACTCAAGAATACATGCATTCAGTTGCGGATTTAATGGTTATCAAGGGTAGACCACATTTTACTGTGGTTAGAAGTTATCTAGTGTCTGATGTGACACGTGCTGGATTTGGAGATGTTGACTTTGGTTGGGGAAAAGCTGTATATGGTGGACCAGCTAAAGGAGGAGTTGGTGCTATACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTACCAGCTCAAGCCATGGAGAAGTTCGTCAAAGAGTTAGATAGTGTACTTAAGAACAACATTAACGAACCTACTATTGGTGGTCCAAAACCTAGTTTCATTGTTTCTTCCTTGTAG
Protein sequence

>Msa0050170

MWRIIYTLAYTVPSIITTIKFSTLSSIIPFLIMAQSLSFTVKRHAPEFVRPSKQTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGPDRKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMCDAAGLVQFMSALGEISCGMNEPSISPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVATIRALLPPHQQKQSNFEILTACLWRCRTIALQPDTDEEVRIICIVNARGKFNPPLPNGYYGNAFAFPVAVTTAGKLMENPLGYALELVKKAKSDVTQEYMHSVADLMVIKGRPHFTVVRSYLVSDVTRAGFGDVDFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPLCLPAQAMEKFVKELDSVLKNNINEPTIGGPKPSFIVSSL*