AlfalfaGEDB | Msa0049010

M. sativa cultivar zhongmu-4 / Msa0049010

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049010	XP_013455462.2	79.798	99	15	2	1	97	11	106	1.96e-45	152

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049010	A0A072UK96	79.798	99	15	2	1	97	1	96	1.68e-45	150

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044160	Msa0049010	0.801157	1.027849e-48	-8.615850e-47
Msa0049010	Msa0217060	0.826501	2.621244e-54	-8.615850e-47
Msa0049010	Msa0282960	0.801552	8.532695e-49	-8.615850e-47
Msa0049010	Msa0437520	0.800479	1.413721e-48	-8.615850e-47
Msa0049010	Msa0636540	0.896648	3.014685e-76	-8.615850e-47
Msa0049010	Msa1284020	0.802095	6.599921e-49	-8.615850e-47
Msa0049010	Msa1433360	0.803142	4.013599e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0049010	MtrunA17_Chr4g0019351	79.798	99	15	2	1	97	1	96	3.23e-49	150
Msa0049010	MtrunA17_Chr4g0019341	76.768	99	18	2	1	97	1	96	1.87e-45	141
Msa0049010	MtrunA17_Chr4g0019361	56.122	98	18	2	1	97	1	74	4.47e-26	92.0
Msa0049010	MtrunA17_Chr4g0018981	46.392	97	33	1	1	97	1	78	4.97e-21	79.3
Msa0049010	MtrunA17_Chr4g0018971	46.875	96	30	2	1	96	1	75	6.63e-19	73.9
Msa0049010	MtrunA17_Chr4g0019021	40.541	111	46	4	1	97	1	105	6.50e-18	72.0
Msa0049010	MtrunA17_Chr8g0368881	38.776	98	45	2	1	97	1	84	2.21e-17	70.1
Msa0049010	MtrunA17_Chr4g0018961	43.299	97	33	1	1	97	1	75	8.53e-16	65.9
Msa0049010	MtrunA17_Chr4g0018931	38.776	98	39	2	1	97	1	78	2.83e-13	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 24 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGTGCTCTCTTATTT+TGG	0.217478	1_2:+2138740	Msa0049010:CDS
AACACTCGAGCTTTCGACCT+AGG	0.613127	1_2:-2139597	None:intergenic
AAGTAAAACCTGCAAAATTG+TGG	0.541805	1_2:-2139026	None:intergenic
AATAAGAAGAGACTCCTTGC+TGG	0.444927	1_2:+2138979	Msa0049010:CDS
AATTGTGGGAGAAGGACACA+TGG	0.681375	1_2:+2139429	Msa0049010:CDS
AGAAGAGACTCCTTGCTGGT+AGG	0.629830	1_2:+2138983	Msa0049010:CDS
AGACTCCTTGCAGAAAATTG+TGG	0.531866	1_2:+2139414	Msa0049010:CDS
AGGAAGCCTGATAAAGCACG+TGG	0.728123	1_2:+2139003	Msa0049010:CDS
ATATCATTCATAGAAAATTG+TGG	0.617375	1_2:-2139476	None:intergenic
CAACGTGGCCGATCAGCATG+AGG	0.638536	1_2:-2139453	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCATCAAAGACATTAGCA+AGG	+	chr1_2:2138790-2138809	Msa0049010:CDS	30.0%
AAGTAAAACCTGCAAAATTG+TGG	-	chr1_2:2139029-2139048	None:intergenic	30.0%
CCCTTATTAATTGTAGTTAG+TGG	+	chr1_2:2139178-2139197	Msa0049010:intron	30.0%
TTTCATCAAAGACATTAGCA+AGG	+	chr1_2:2138790-2138809	Msa0049010:CDS	30.0%
AAGTAAAACCTGCAAAATTG+TGG	-	chr1_2:2139029-2139048	None:intergenic	30.0%
CCCTTATTAATTGTAGTTAG+TGG	+	chr1_2:2139178-2139197	Msa0049010:intron	30.0%
GCGCAAATGCAATAACAAAA+TGG	-	chr1_2:2138870-2138889	None:intergenic	35.0%
GACTATTATTTAGAGACGGA+GGG	-	chr1_2:2139077-2139096	None:intergenic	35.0%
AGTTAGTGGAGTAGTTAAGT+TGG	+	chr1_2:2139192-2139211	Msa0049010:intron	35.0%
AAACAATTATTGTGAGCGGA+GGG	+	chr1_2:2139316-2139335	Msa0049010:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	2138722	2139673	2138722	ID=Msa0049010;Name=Msa0049010
chr1_2	mRNA	2138722	2139673	2138722	ID=Msa0049010-mRNA-1;Parent=Msa0049010;Name=Msa0049010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=10\|1\|1\|1\|1\|1\|3\|182\|97
chr1_2	exon	2138722	2138843	2138722	ID=Msa0049010-mRNA-1:exon:391;Parent=Msa0049010-mRNA-1
chr1_2	exon	2138959	2139039	2138959	ID=Msa0049010-mRNA-1:exon:392;Parent=Msa0049010-mRNA-1
chr1_2	exon	2139391	2139673	2139391	ID=Msa0049010-mRNA-1:exon:393;Parent=Msa0049010-mRNA-1
chr1_2	five_prime_UTR	2138722	2138731	2138722	ID=Msa0049010-mRNA-1:five_prime_utr;Parent=Msa0049010-mRNA-1
chr1_2	CDS	2138732	2138843	2138732	ID=Msa0049010-mRNA-1:cds;Parent=Msa0049010-mRNA-1
chr1_2	CDS	2138959	2139039	2138959	ID=Msa0049010-mRNA-1:cds;Parent=Msa0049010-mRNA-1
chr1_2	CDS	2139391	2139491	2139391	ID=Msa0049010-mRNA-1:cds;Parent=Msa0049010-mRNA-1
chr1_2	three_prime_UTR	2139492	2139673	2139492	ID=Msa0049010-mRNA-1:three_prime_utr;Parent=Msa0049010-mRNA-1

Gene Sequence	>Msa0049010 ATGGCTTCAAAGAAGTGCTCTCTTATTTTGGTAGTTCTCTTTCTTTGTCTGTTGAGTTTTTCATCAAAGACATTAGCAAGGAACATTGCGAATGCTTCGAAACTTTATCCAATTTCAGATGAAATAGGTCTGAATAAGAAGAGACTCCTTGCTGGTAGGAAGCCTGATAAAGCACGTGGCCACAATTTTGCAGAAGAAATAAATCTGAATAAGAAGAGACTCCTTGCAGAAAATTGTGGGAGAAGGACACATGGTCCTCATGCTGATCGGCCACGTTGCCACAATTTTCTATGA
Protein sequence	>Msa0049010 MASKKCSLILVVLFLCLLSFSSKTLARNIANASKLYPISDEIGLNKKRLLAGRKPDKARGHNFAEEINLNKKRLLAENCGRRTHGPHADRPRCHNFL*