AlfalfaGEDB | Msa0044160

M. sativa cultivar zhongmu-4 / Msa0044160

KEGG: K07024
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044160	XP_013470285.1	95.026	382	15	1	1	378	1	382	0.0	764

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044160	sp\|Q940H3\|TBL36_ARATH	61.478	379	132	6	2	376	4	372	1.33e-171	486

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044160	A0A072VSC4	95.026	382	15	1	1	378	1	382	0.0	764

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa0044160	0.813996	1.928849e-51	-8.615850e-47
Msa0019900	Msa0044160	0.805326	1.409183e-49	-8.615850e-47
Msa0025160	Msa0044160	0.853081	3.024314e-61	-8.615850e-47
Msa0033220	Msa0044160	0.810023	1.416104e-50	-8.615850e-47
Msa0042640	Msa0044160	0.819067	1.410582e-52	-8.615850e-47
Msa0044160	Msa0045810	0.827117	1.867621e-54	-8.615850e-47
Msa0044160	Msa0046200	0.805491	1.301137e-49	-8.615850e-47
Msa0044160	Msa0046870	0.800506	1.396229e-48	-8.615850e-47
Msa0044160	Msa0049010	0.801157	1.027849e-48	-8.615850e-47
Msa0044160	Msa0062190	0.826865	2.145383e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044160	MtrunA17_Chr1g0210771	95.026	382	15	1	1	378	1	382	0.0	764
Msa0044160	MtrunA17_Chr1g0171171	73.351	379	96	3	1	378	1	375	0.0	602
Msa0044160	MtrunA17_Chr3g0105301	42.216	334	175	5	55	374	43	372	5.50e-99	298
Msa0044160	MtrunA17_Chr5g0430371	40.233	343	181	5	53	374	56	395	1.23e-98	298
Msa0044160	MtrunA17_Chr2g0283581	42.296	331	170	6	55	378	42	358	1.42e-95	289
Msa0044160	MtrunA17_Chr4g0006991	42.075	347	177	8	53	378	84	427	1.38e-92	284
Msa0044160	MtrunA17_Chr3g0097891	42.216	334	169	7	55	378	31	350	3.40e-92	280
Msa0044160	MtrunA17_Chr2g0325481	39.458	332	180	6	54	378	49	366	1.17e-91	280
Msa0044160	MtrunA17_Chr7g0258851	38.947	380	208	8	19	378	212	587	1.09e-89	281
Msa0044160	MtrunA17_Chr2g0314791	42.687	335	167	8	53	378	27	345	2.39e-89	273

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044160	AT3G54260.1	61.478	379	132	6	2	376	4	372	1.35e-172	486
Msa0044160	AT5G58600.1	40.237	338	185	6	55	378	66	400	1.15e-92	283
Msa0044160	AT2G31110.2	38.462	364	198	7	21	374	11	358	7.12e-92	280
Msa0044160	AT1G29050.1	41.088	331	175	5	55	378	61	378	1.65e-91	280
Msa0044160	AT2G30900.1	40.841	333	174	8	53	374	41	361	1.50e-89	274
Msa0044160	AT2G34070.1	39.823	339	181	7	49	378	59	383	1.52e-89	275
Msa0044160	AT5G01360.2	38.329	347	191	8	53	378	34	378	5.21e-86	266
Msa0044160	AT3G62390.1	38.576	337	187	6	53	374	136	467	2.15e-85	267
Msa0044160	AT5G01360.1	38.329	347	191	8	53	378	90	434	2.33e-85	266
Msa0044160	AT2G30010.1	40.058	347	179	8	55	378	56	396	3.41e-85	264

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Find 98 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGGTGGATTTGAATT+TGG	0.291594	1_1:-75645165	Msa0044160:CDS
AAATATCAGGCACACCAGGG+AGG	0.749580	1_1:+75644750	None:intergenic
AAATGGAAGTGGAAGCCATT+AGG	0.444002	1_1:-75646046	Msa0044160:CDS
AAGAAATGTGATTTCTCAGT+TGG	0.430768	1_1:-75646175	Msa0044160:CDS
AAGGAGTTATTCCAACTGAC+AGG	0.516555	1_1:-75645680	Msa0044160:CDS
AAGTATCTTGGTAAAATGAG+AGG	0.596417	1_1:-75645771	Msa0044160:CDS
AATGGCTGCAATCAGAGGAC+TGG	0.587580	1_1:+75644777	None:intergenic
ACATCCTTCAGTGTATAGTA+AGG	0.542161	1_1:-75644837	Msa0044160:CDS
ACTCAATACATGGGCAAAGT+GGG	0.582566	1_1:-75645180	Msa0044160:CDS
AGAAACTGAAGACGTCAACA+TGG	0.659763	1_1:-75646221	Msa0044160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTTCCATGAATCTCTTT+GGG	+	chr1_1:75644700-75644719	None:intergenic	30.0%
ATTTCTTCCATGAATCTCTT+TGG	+	chr1_1:75644701-75644720	None:intergenic	30.0%
AAGAAATGTGATTTCTCAGT+TGG	-	chr1_1:75644714-75644733	Msa0044160:exon	30.0%
CATTTCTCATAATCTGAATC+CGG	+	chr1_1:75644828-75644847	None:intergenic	30.0%
TAATGTTTCATCATCACCTT+GGG	+	chr1_1:75644878-75644897	None:intergenic	30.0%
TTAATGTTTCATCATCACCT+TGG	+	chr1_1:75644879-75644898	None:intergenic	30.0%
AGAAGCTAAATTTATCAGCA+TGG	+	chr1_1:75645070-75645089	None:intergenic	30.0%
AAGTATCTTGGTAAAATGAG+AGG	-	chr1_1:75645118-75645137	Msa0044160:CDS	30.0%
ATAGCATGGAAAGACATTAA+AGG	+	chr1_1:75645256-75645275	None:intergenic	30.0%
TTTAATGTCTTTCCATGCTA+TGG	-	chr1_1:75645255-75645274	Msa0044160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	75644558	75646353	75644558	ID=Msa0044160;Name=Msa0044160
chr1_1	mRNA	75644558	75646353	75644558	ID=Msa0044160-mRNA-1;Parent=Msa0044160;Name=Msa0044160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|1\|0.8\|1\|1\|1\|5\|163\|378
chr1_1	exon	75644558	75645021	75644558	ID=Msa0044160-mRNA-1:exon:25540;Parent=Msa0044160-mRNA-1
chr1_1	exon	75645113	75645271	75645113	ID=Msa0044160-mRNA-1:exon:25539;Parent=Msa0044160-mRNA-1
chr1_1	exon	75645376	75645557	75645376	ID=Msa0044160-mRNA-1:exon:25538;Parent=Msa0044160-mRNA-1
chr1_1	exon	75645635	75645806	75645635	ID=Msa0044160-mRNA-1:exon:25537;Parent=Msa0044160-mRNA-1
chr1_1	exon	75646031	75646353	75646031	ID=Msa0044160-mRNA-1:exon:25536;Parent=Msa0044160-mRNA-1
chr1_1	CDS	75646031	75646353	75646031	ID=Msa0044160-mRNA-1:cds;Parent=Msa0044160-mRNA-1
chr1_1	CDS	75645635	75645806	75645635	ID=Msa0044160-mRNA-1:cds;Parent=Msa0044160-mRNA-1
chr1_1	CDS	75645376	75645557	75645376	ID=Msa0044160-mRNA-1:cds;Parent=Msa0044160-mRNA-1
chr1_1	CDS	75645113	75645271	75645113	ID=Msa0044160-mRNA-1:cds;Parent=Msa0044160-mRNA-1
chr1_1	CDS	75644721	75645021	75644721	ID=Msa0044160-mRNA-1:cds;Parent=Msa0044160-mRNA-1
chr1_1	three_prime_UTR	75644558	75644720	75644558	ID=Msa0044160-mRNA-1:three_prime_utr;Parent=Msa0044160-mRNA-1

Gene Sequence

>Msa0044160

ATGGCAAAAACAAACCTTCATTTACTGTCATTTTTATTCTTCTTAGGCTTATTCAACTGCACATTATCACTGATCAATCCAGAGGAAGTGTCCAGTTGGCTTGCATTGGAAGAAACTGAAGACGTCAACATGGTGCAAACCCAAAGAGATTCATGGAAGAAATGTGATTTCTCAGTTGGAAAATGGATATTTGATCAAACCTACCCTCTCTATGATTCCAACTGTCCTTATCTCGCCACTGCAGTAACTTGTCAAAAGAATGGACGGCCGGATTCAGATTATGAGAAATGGAAGTGGAAGCCATTAGGTTGTTCCATCCCAAGGTTTGATGCACTGAAGTATCTTGGTAAAATGAGAGGAAAGAGAATGATGTTGGTGGGCGATTCTATAATGAGAAACCAATGGGAATCTCTTGTATGCTTAGTTCAAGGAGTTATTCCAACTGACAGGAAAAAGGTCACCTATGATGGTCCTTTAATGTCTTTCCATGCTATGGATTTTGAGACATCAATTGAGTTCTTCTGGGCACCACTATTGGTAGAACTGAAGAAAGGGTCTAATAATAAGAGAATTCTACATTTGGATTTGATTGAAGAGAATGCAAGGTATTGGAAAGGAGTTGATATTCTTGCATTTGATTCAGCTCATTGGTGGACTCATTCTGGTCAATCTAGCTCGTGGGATTATTACATGGAAGGAAATAGTATCATCACAAACATGAATCAAATGGTTGCCTATGAGAAAGGACTCAATACATGGGCAAAGTGGGTGGATTTGAATTTGGATCCTCGAAAAACCCGAGTCGTTTTTAGAAGTATGGCACCTAGACATAACAGGCAAAATGGTTGGAAATGTTACAATCAAAGGCAACCTGTAAAATATTTCAGCCACATGCATGTTCCAGGACCAGTAGTAGTGCTAAAAGGAGTGGTGAAGAGAATGAGATTTCCAGTATATCTACAGGATATTACAACAATGACTGCATTTAGAAGAGATGGACATCCTTCAGTGTATAGTAAGGTAATAAGTGAAGAAGAGAGGCAGAAACAAGGTAATGGCCAGTCCTCTGATTGCAGCCATTGGTGCCTCCCTGGTGTGCCTGATATTTGGAACGAAATGCTGAGTGCATGGCTTTAA

Protein sequence

>Msa0044160

MAKTNLHLLSFLFFLGLFNCTLSLINPEEVSSWLALEETEDVNMVQTQRDSWKKCDFSVGKWIFDQTYPLYDSNCPYLATAVTCQKNGRPDSDYEKWKWKPLGCSIPRFDALKYLGKMRGKRMMLVGDSIMRNQWESLVCLVQGVIPTDRKKVTYDGPLMSFHAMDFETSIEFFWAPLLVELKKGSNNKRILHLDLIEENARYWKGVDILAFDSAHWWTHSGQSSSWDYYMEGNSIITNMNQMVAYEKGLNTWAKWVDLNLDPRKTRVVFRSMAPRHNRQNGWKCYNQRQPVKYFSHMHVPGPVVVLKGVVKRMRFPVYLQDITTMTAFRRDGHPSVYSKVISEEERQKQGNGQSSDCSHWCLPGVPDIWNEMLSAWL*