AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1433360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433360 MtrunA17_Chr8g0382281 96.825 315 10 0 1 315 1 315 0.0 619
Msa1433360 MtrunA17_Chr5g0425971 66.032 315 107 0 1 315 1 315 5.95e-154 433
Msa1433360 MtrunA17_Chr8g0352611 51.111 315 152 2 1 315 1 313 1.68e-104 308
Msa1433360 MtrunA17_Chr3g0083921 50.159 315 156 1 1 315 1 314 4.65e-103 304
Msa1433360 MtrunA17_Chr3g0083901 49.206 315 158 2 1 314 1 314 5.28e-102 301
Msa1433360 MtrunA17_Chr8g0352621 50.799 313 150 2 1 312 1 310 8.17e-102 301
Msa1433360 MtrunA17_Chr8g0352591 48.077 312 150 2 1 312 1 300 1.91e-91 274
Msa1433360 MtrunA17_Chr2g0293441 42.904 303 173 0 12 314 11 313 2.89e-88 266
Msa1433360 MtrunA17_Chr8g0352571 42.857 315 177 1 1 312 1 315 3.01e-82 251
Msa1433360 MtrunA17_Chr8g0393281 37.855 317 193 3 1 315 1 315 3.63e-72 225
Msa1433360 MtrunA17_Chr1g0162071 36.076 316 198 3 1 314 1 314 8.45e-67 211
Msa1433360 MtrunA17_Chr6g0479411 35.783 313 199 2 1 312 28 339 1.29e-64 207
Msa1433360 MtrunA17_Chr6g0479421 37.580 314 192 3 1 312 1 312 3.29e-64 205
Msa1433360 MtrunA17_Chr1g0210981 36.624 314 195 3 1 312 1 312 3.30e-62 200
Msa1433360 MtrunA17_Chr6g0479391 36.943 314 194 3 1 312 1 312 5.31e-56 184
Msa1433360 MtrunA17_Chr8g0352581 36.792 318 172 8 14 312 4 311 2.39e-50 169
Msa1433360 MtrunA17_Chr6g0461141 26.277 274 194 5 45 310 34 307 2.93e-22 95.1
Msa1433360 MtrunA17_Chr3g0084011 51.351 74 35 1 1 74 1 73 5.41e-18 78.2
Msa1433360 MtrunA17_Chr3g0084021 56.061 66 29 0 145 210 5 70 2.04e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433360 AT5G65020.1 71.338 314 89 1 1 313 1 314 1.91e-169 473
Msa1433360 AT5G10230.1 71.019 314 91 0 1 314 1 314 1.64e-167 468
Msa1433360 AT5G10220.1 68.671 316 97 1 1 314 1 316 8.92e-160 449
Msa1433360 AT5G65020.2 72.318 289 79 1 26 313 11 299 1.28e-156 440
Msa1433360 AT1G35720.1 66.456 316 105 1 1 315 1 316 1.32e-153 433
Msa1433360 AT5G12380.1 50.799 313 153 1 1 313 1 312 2.76e-109 320
Msa1433360 AT2G38760.1 42.138 318 178 2 1 312 1 318 1.45e-82 253
Msa1433360 AT1G68090.1 37.380 313 195 1 1 312 1 313 3.04e-63 203
Msa1433360 AT1G68090.2 37.349 249 151 3 1 244 1 249 6.11e-43 148
Msa1433360 AT2G38750.2 35.526 304 171 6 26 311 2 298 6.64e-43 150
Msa1433360 AT2G38750.1 35.505 307 173 6 23 311 16 315 8.56e-43 150

Find 88 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGAGGGCAGCAATTA+AGG 0.189714 tig0027269:+12883 Msa1433360:CDS
AATCACTATAACAATGAGTT+TGG 0.243154 tig0027269:+12524 Msa1433360:CDS
ACCCCATAATTCATGGAAAA+AGG 0.279086 tig0027269:+13513 Msa1433360:three_prime_UTR
AATATAATCGATCCGTAATA+AGG 0.286006 tig0027269:-13383 None:intergenic
TCATATTTCTCTCCTTATTA+CGG 0.324655 tig0027269:+13371 Msa1433360:three_prime_UTR
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 tig0027269:-10833 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 tig0027269:+11898 Msa1433360:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 tig0027269:+12433 Msa1433360:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 tig0027269:+11965 Msa1433360:CDS
GTAGTCATGGAGTGGCTGTT+TGG 0.374106 tig0027269:+13159 Msa1433360:three_prime_UTR
GCAATTGACAAAGACACTTC+TGG 0.392622 tig0027269:+13073 Msa1433360:CDS
TACGCATACCCCATAATTCA+TGG 0.395314 tig0027269:+13506 Msa1433360:three_prime_UTR
AGTTCCTCAAAATATTTCTC+AGG 0.401647 tig0027269:-12917 None:intergenic
TTATTGAGGGCAGCAATTAA+GGG 0.414248 tig0027269:+12884 Msa1433360:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 tig0027269:+12525 Msa1433360:CDS
TCTTGATAGTATACAGAATT+CGG 0.419227 tig0027269:+13227 Msa1433360:three_prime_UTR
AGCTGTTTCATTATTTAAGA+AGG 0.431198 tig0027269:-13347 None:intergenic
GAGGAACACTGTTTCTTCTC+TGG 0.435446 tig0027269:-13042 None:intergenic
GCAGGATTTGGAAACTGATT+CGG 0.447953 tig0027269:+12844 Msa1433360:intron
AGTTTATTAAACTTATCTCC+TGG 0.453050 tig0027269:+13556 Msa1433360:three_prime_UTR
TGTGGGCATACACCGTTATG+AGG 0.458266 tig0027269:+12364 Msa1433360:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 tig0027269:-12472 None:intergenic
GATAGGCAACATCTTCTTCA+AGG 0.470858 tig0027269:-11955 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 tig0027269:+12459 Msa1433360:CDS
CAAAATCACGCTGATGATGA+AGG 0.476971 tig0027269:-13195 None:intergenic
AACAGCCACTCCATGACTAC+TGG 0.479223 tig0027269:-13156 None:intergenic
ATGAATATCTGAAATTATTG+AGG 0.486467 tig0027269:+12870 Msa1433360:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 tig0027269:+11784 Msa1433360:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 tig0027269:+13105 Msa1433360:CDS
GAGAAGAAACAGTGTTCCTC+TGG 0.495918 tig0027269:+13045 Msa1433360:CDS
TGAATACTGAAAGCCAATGT+TGG 0.496726 tig0027269:-10784 None:intergenic
GAGCTGCATTTCTATGAGCC+AGG 0.520838 tig0027269:-11464 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 tig0027269:-11521 None:intergenic
GAATACTGAAAGCCAATGTT+GGG 0.523577 tig0027269:-10783 None:intergenic
CTTCAAGGGACTTTATGAAA+CGG 0.527791 tig0027269:-11940 None:intergenic
TGAATATCTGAAATTATTGA+GGG 0.538168 tig0027269:+12871 Msa1433360:CDS
TAGGCTGGCTATAAACAAGA+TGG 0.541067 tig0027269:+12943 Msa1433360:CDS
AGCCAATGTTGGGAGGGAGC+AGG 0.542457 tig0027269:-10773 None:intergenic
AAAATTCTCCTTGCACTGAT+GGG 0.542533 tig0027269:+13106 Msa1433360:CDS
AACAGAAAGCTGTGCTGCTG+TGG 0.544066 tig0027269:+11777 Msa1433360:intron
AATTGTTCACTGTCTTCTGA+TGG 0.548405 tig0027269:-10885 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 tig0027269:-11891 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 tig0027269:-10867 None:intergenic
ACTTGAAACAAACACTCCCT+TGG 0.550478 tig0027269:-13536 None:intergenic
CTTAATCTGTCCAGTAGTCA+TGG 0.553997 tig0027269:+13146 Msa1433360:three_prime_UTR
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 tig0027269:-12940 None:intergenic
ATGAATTATGGGGTATGCGT+AGG 0.559037 tig0027269:-13504 None:intergenic
ACGCTTGATAATATCGATCC+TGG 0.563259 tig0027269:+11446 Msa1433360:CDS
AACCTGCTCCCTCCCAACAT+TGG 0.565034 tig0027269:+10771 Msa1433360:five_prime_UTR
GTTCCTCAAAATATTTCTCA+GGG 0.565806 tig0027269:-12916 None:intergenic
GCTGCTGTGGACATTGGATC+CGG 0.567043 tig0027269:+11790 Msa1433360:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 tig0027269:-11500 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 tig0027269:-11972 None:intergenic
CAGAATTCGGTGACTTGCTG+TGG 0.582038 tig0027269:+13240 Msa1433360:three_prime_UTR
GGTTGATTTGCAGCGAATTG+CGG 0.585356 tig0027269:+13012 Msa1433360:CDS
AAAATCACGCTGATGATGAA+GGG 0.586986 tig0027269:-13194 None:intergenic
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 tig0027269:-13069 None:intergenic
TACTGAAAGCCAATGTTGGG+AGG 0.589846 tig0027269:-10780 None:intergenic
GTGATATGTATGAACTATTG+TGG 0.591619 tig0027269:+13274 Msa1433360:three_prime_UTR
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 tig0027269:-11520 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 tig0027269:-13061 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 tig0027269:-12376 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 tig0027269:-10868 None:intergenic
ATAGGCAACATCTTCTTCAA+GGG 0.598603 tig0027269:-11954 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 tig0027269:+13015 Msa1433360:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 tig0027269:+12973 Msa1433360:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 tig0027269:-13114 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 tig0027269:+12427 Msa1433360:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 tig0027269:+12365 Msa1433360:CDS
GAAACTTACACGCAGACCCA+TGG 0.623172 tig0027269:+11504 Msa1433360:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 tig0027269:+12944 Msa1433360:CDS
ACTGAAAGCCAATGTTGGGA+GGG 0.625318 tig0027269:-10779 None:intergenic
AGATGAGGTGAACATGACAT+TGG 0.629033 tig0027269:+12388 Msa1433360:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 tig0027269:-12359 None:intergenic
CTCAAAATATTTCTCAGGGT+AGG 0.640542 tig0027269:-12912 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 tig0027269:-10879 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 tig0027269:-10866 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 tig0027269:-11902 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 tig0027269:+12373 Msa1433360:CDS
TCTGTCCAGTAGTCATGGAG+TGG 0.655004 tig0027269:+13151 Msa1433360:three_prime_UTR
TTCAAACAATTCGATCATCG+TGG 0.667000 tig0027269:+11859 Msa1433360:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 tig0027269:+11979 Msa1433360:CDS
AGTGGTGACAACTAGAGCTG+AGG 0.671413 tig0027269:+12991 Msa1433360:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 tig0027269:+12541 Msa1433360:CDS
ATCGATCTGTGTGTATAATG+TGG 0.684795 tig0027269:-10810 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 tig0027269:+12474 Msa1433360:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 tig0027269:+10891 Msa1433360:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 tig0027269:+10830 Msa1433360:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG + tig0027269:11578-11597 Msa1433360:intron 10.0%
!!! TAAATAATATGTTTTGAATA+TGG + tig0027269:13300-13319 Msa1433360:three_prime_UTR 10.0%
!!! ATTAACTTCCTTTTAATTAA+AGG + tig0027269:12723-12742 Msa1433360:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG + tig0027269:12724-12743 Msa1433360:intron 15.0%
!! TGAAATAAAAGTCAAAGAAA+TGG - tig0027269:10944-10963 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG + tig0027269:11042-11061 Msa1433360:intron 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG + tig0027269:11154-11173 Msa1433360:intron 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG - tig0027269:12009-12028 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG - tig0027269:12010-12029 None:intergenic 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG + tig0027269:12129-12148 Msa1433360:intron 20.0%
!! AAAGGTTAAATACATATAAC+TGG - tig0027269:12248-12267 None:intergenic 20.0%
!! ACAGAAATAAGAATCATAAA+TGG - tig0027269:12581-12600 None:intergenic 20.0%
!! ATATTTCTTGAAGAGAAAAA+TGG - tig0027269:12669-12688 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG - tig0027269:12701-12720 None:intergenic 20.0%
!! CTATAATCCCTTTAATTAAA+AGG - tig0027269:12734-12753 None:intergenic 20.0%
!!! ATGAATATCTGAAATTATTG+AGG + tig0027269:12870-12889 Msa1433360:CDS 20.0%
!!! TGAATATCTGAAATTATTGA+GGG + tig0027269:12871-12890 Msa1433360:CDS 20.0%
!! TATTTCCAAAAAATTATTCC+AGG - tig0027269:13577-13596 None:intergenic 20.0%
! TAAAAGTCAAAGAAATGGAT+CGG - tig0027269:10939-10958 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG + tig0027269:11345-11364 Msa1433360:intron 25.0%
! TCAACAATTGTTAGTGAAAA+TGG - tig0027269:11652-11671 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG + tig0027269:11706-11725 Msa1433360:intron 25.0%
!!! CAAGGTATTTTCATGTAATA+AGG + tig0027269:11737-11756 Msa1433360:intron 25.0%
! AAAATCTTCCAAAATTTACG+TGG + tig0027269:12106-12125 Msa1433360:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG - tig0027269:12180-12199 None:intergenic 25.0%
! GTTAAATACATATAACTGGT+TGG - tig0027269:12244-12263 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+GGG - tig0027269:12312-12331 None:intergenic 25.0%
! AAACAAAATTTCATCAGACA+AGG - tig0027269:12313-12332 None:intergenic 25.0%
! AATCACTATAACAATGAGTT+TGG + tig0027269:12524-12543 Msa1433360:CDS 25.0%
! ATCACTATAACAATGAGTTT+GGG + tig0027269:12525-12544 Msa1433360:CDS 25.0%
! TCAATAATATGATTATGGCT+GGG - tig0027269:12696-12715 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG - tig0027269:12697-12716 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG + tig0027269:12768-12787 Msa1433360:intron 25.0%
!!! AGGATAACCTTTTTTTTACT+AGG + tig0027269:12788-12807 Msa1433360:intron 25.0%
!!! GGATAACCTTTTTTTTACTA+GGG + tig0027269:12789-12808 Msa1433360:intron 25.0%
! TACAAACCCTAGTAAAAAAA+AGG - tig0027269:12798-12817 None:intergenic 25.0%
!! TCTTGATAGTATACAGAATT+CGG + tig0027269:13227-13246 Msa1433360:three_prime_UTR 25.0%
!! AGCTGTTTCATTATTTAAGA+AGG - tig0027269:13350-13369 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + tig0027269:13371-13390 Msa1433360:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - tig0027269:13386-13405 None:intergenic 25.0%
! TTTCATTATTTAAACTCCCT+TGG - tig0027269:13442-13461 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + tig0027269:13371-13390 Msa1433360:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - tig0027269:13386-13405 None:intergenic 25.0%
! AGTTTATTAAACTTATCTCC+TGG + tig0027269:13556-13575 Msa1433360:three_prime_UTR 25.0%
!!! TATCTCCTGGAATAATTTTT+TGG + tig0027269:13569-13588 Msa1433360:three_prime_UTR 25.0%
AATAAGCAGTGCTCAAATAA+GGG + tig0027269:11315-11334 Msa1433360:intron 30.0%
AAACAACAATATGAATGGAC+AGG - tig0027269:11391-11410 None:intergenic 30.0%
!! GTCCATTCATATTGTTGTTT+CGG + tig0027269:11391-11410 Msa1433360:intron 30.0%
!! TTTCGGTGACATATTTTTAC+AGG + tig0027269:11408-11427 Msa1433360:intron 30.0%
!! GTGACATATTTTTACAGGAT+GGG + tig0027269:11413-11432 Msa1433360:intron 30.0%
!! TGACATATTTTTACAGGATG+GGG + tig0027269:11414-11433 Msa1433360:intron 30.0%
TTTAAGAAGATCTTCTCCAT+GGG - tig0027269:11523-11542 None:intergenic 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG + tig0027269:11554-11573 Msa1433360:CDS 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG - tig0027269:11837-11856 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG - tig0027269:12117-12136 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG - tig0027269:12159-12178 None:intergenic 30.0%
GCATAAGCATAAACATGAAA+AGG - tig0027269:12266-12285 None:intergenic 30.0%
ACAAAATTTCATCAGACAAG+GGG - tig0027269:12311-12330 None:intergenic 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG + tig0027269:12334-12353 Msa1433360:intron 30.0%
! TAGACAAGGTATGAATGTTT+TGG + tig0027269:12555-12574 Msa1433360:intron 30.0%
GTTCCTCAAAATATTTCTCA+GGG - tig0027269:12919-12938 None:intergenic 30.0%
AGTTCCTCAAAATATTTCTC+AGG - tig0027269:12920-12939 None:intergenic 30.0%
!! AATATTTTGAGGAACTCCTT+AGG + tig0027269:12924-12943 Msa1433360:CDS 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG - tig0027269:12972-12991 None:intergenic 30.0%
GTGATATGTATGAACTATTG+TGG + tig0027269:13274-13293 Msa1433360:three_prime_UTR 30.0%
GAATACTGAAAGCCAATGTT+GGG - tig0027269:10786-10805 None:intergenic 35.0%
TGAATACTGAAAGCCAATGT+TGG - tig0027269:10787-10806 None:intergenic 35.0%
ATCGATCTGTGTGTATAATG+TGG - tig0027269:10813-10832 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG - tig0027269:10888-10907 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG - tig0027269:11233-11252 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG - tig0027269:11251-11270 None:intergenic 35.0%
GAATAAGCAGTGCTCAAATA+AGG + tig0027269:11314-11333 Msa1433360:intron 35.0%
TCATGCCATGAAAAACACAA+AGG - tig0027269:11353-11372 None:intergenic 35.0%
CACCGAAACAACAATATGAA+TGG - tig0027269:11396-11415 None:intergenic 35.0%
!! GGTGACATATTTTTACAGGA+TGG + tig0027269:11412-11431 Msa1433360:intron 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG - tig0027269:11524-11543 None:intergenic 35.0%
TTGACATGAAACCTTAGTCA+AGG - tig0027269:11720-11739 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG + tig0027269:11719-11738 Msa1433360:intron 35.0%
TTCAAACAATTCGATCATCG+TGG + tig0027269:11859-11878 Msa1433360:CDS 35.0%
ATCTCCACTTGAACTTCTTA+AGG + tig0027269:11898-11917 Msa1433360:CDS 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG - tig0027269:11905-11924 None:intergenic 35.0%
CTTCAAGGGACTTTATGAAA+CGG - tig0027269:11943-11962 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG - tig0027269:11957-11976 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG - tig0027269:11997-12016 None:intergenic 35.0%
TTCCAAAAATACACCCATCT+TGG + tig0027269:12207-12226 Msa1433360:intron 35.0%
AAAAATACACCCATCTTGGT+GGG + tig0027269:12211-12230 Msa1433360:intron 35.0%
AAAAACGTCAGATCAAGACA+TGG - tig0027269:12288-12307 None:intergenic 35.0%
ATTGCTTCATGAGAAGATTG+CGG + tig0027269:12427-12446 Msa1433360:CDS 35.0%
! TTGTTGTTACAATCCTGATC+AGG - tig0027269:12475-12494 None:intergenic 35.0%
TGATCAGGATTGTAACAACA+AGG + tig0027269:12474-12493 Msa1433360:CDS 35.0%
GTTTGGGAATGTAATAGACA+AGG + tig0027269:12541-12560 Msa1433360:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG + tig0027269:12883-12902 Msa1433360:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG + tig0027269:12884-12903 Msa1433360:CDS 35.0%
CTCAAAATATTTCTCAGGGT+AGG - tig0027269:12915-12934 None:intergenic 35.0%
! CTACCCTGAGAAATATTTTG+AGG + tig0027269:12913-12932 Msa1433360:CDS 35.0%
TGAAAATGCTCTTACTAGAG+TGG + tig0027269:12973-12992 Msa1433360:CDS 35.0%
AAGTGTCTTTGTCAATTGCA+CGG - tig0027269:13072-13091 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG + tig0027269:13106-13125 Msa1433360:CDS 35.0%
! AAAATCACGCTGATGATGAA+GGG - tig0027269:13197-13216 None:intergenic 35.0%
ACCCCATAATTCATGGAAAA+AGG + tig0027269:13416-13435 Msa1433360:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG - tig0027269:13420-13439 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - tig0027269:13421-13440 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - tig0027269:13422-13441 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + tig0027269:13422-13441 Msa1433360:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG + tig0027269:13423-13442 Msa1433360:intron 35.0%
ACCCCATAATTCATGGAAAA+AGG + tig0027269:13416-13435 Msa1433360:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG - tig0027269:13420-13439 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - tig0027269:13421-13440 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - tig0027269:13422-13441 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + tig0027269:13422-13441 Msa1433360:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG + tig0027269:13423-13442 Msa1433360:intron 35.0%
GATCCTGAACACAAACACAA+TGG + tig0027269:10830-10849 Msa1433360:exon 40.0%
AGTCAAAGAAATGGATCGGT+AGG - tig0027269:10935-10954 None:intergenic 40.0%
ACACTCCTATGTTACGTGTT+TGG + tig0027269:11088-11107 Msa1433360:intron 40.0%
TCCTATGTTACGTGTTTGGT+TGG + tig0027269:11092-11111 Msa1433360:intron 40.0%
ACCAACCAAACACGTAACAT+AGG - tig0027269:11096-11115 None:intergenic 40.0%
! ACGCTTGATAATATCGATCC+TGG + tig0027269:11446-11465 Msa1433360:CDS 40.0%
AAGTTCAAGTGGAGATCTTG+TGG - tig0027269:11894-11913 None:intergenic 40.0%
GATAGGCAACATCTTCTTCA+AGG - tig0027269:11958-11977 None:intergenic 40.0%
GATGTTGCCTATCATACTTC+TGG + tig0027269:11965-11984 Msa1433360:CDS 40.0%
! GATGTCACCAGAAGTATGAT+AGG - tig0027269:11975-11994 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG - tig0027269:12212-12231 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG + tig0027269:12210-12229 Msa1433360:intron 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG + tig0027269:12346-12365 Msa1433360:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG + tig0027269:12347-12366 Msa1433360:intron 40.0%
AGATGAGGTGAACATGACAT+TGG + tig0027269:12388-12407 Msa1433360:CDS 40.0%
TCATGAGAAGATTGCGGATA+AGG + tig0027269:12433-12452 Msa1433360:CDS 40.0%
ACAATCATGATGACCTGATC+AGG + tig0027269:12459-12478 Msa1433360:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG - tig0027269:12615-12634 None:intergenic 40.0%
! TATTAGATCTGCCCTTTTGC+TGG - tig0027269:12616-12635 None:intergenic 40.0%
GCAGGATTTGGAAACTGATT+CGG + tig0027269:12844-12863 Msa1433360:intron 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG - tig0027269:12943-12962 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG + tig0027269:12943-12962 Msa1433360:CDS 40.0%
! AGGCTGGCTATAAACAAGAT+GGG + tig0027269:12944-12963 Msa1433360:CDS 40.0%
GCAATTGACAAAGACACTTC+TGG + tig0027269:13073-13092 Msa1433360:CDS 40.0%
GAAAATTCTCCTTGCACTGA+TGG + tig0027269:13105-13124 Msa1433360:CDS 40.0%
CTTAATCTGTCCAGTAGTCA+TGG + tig0027269:13146-13165 Msa1433360:three_prime_UTR 40.0%
! CAAAATCACGCTGATGATGA+AGG - tig0027269:13198-13217 None:intergenic 40.0%
ATGAATTATGGGGTATGCGT+AGG - tig0027269:13410-13429 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + tig0027269:13409-13428 Msa1433360:intron 40.0%
ATGAATTATGGGGTATGCGT+AGG - tig0027269:13410-13429 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + tig0027269:13409-13428 Msa1433360:intron 40.0%
ACTTGAAACAAACACTCCCT+TGG - tig0027269:13539-13558 None:intergenic 40.0%
ACTGAAAGCCAATGTTGGGA+GGG - tig0027269:10782-10801 None:intergenic 45.0%
TACTGAAAGCCAATGTTGGG+AGG - tig0027269:10783-10802 None:intergenic 45.0%
TCGCCATTGTGTTTGTGTTC+AGG - tig0027269:10836-10855 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG - tig0027269:10882-10901 None:intergenic 45.0%
GAAGACAGTGAACAATTGCG+CGG + tig0027269:10891-10910 Msa1433360:CDS 45.0%
GGCTAAAAATGCATCACGCT+CGG - tig0027269:11816-11835 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG - tig0027269:12379-12398 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG + tig0027269:12602-12621 Msa1433360:intron 45.0%
TCGAACTAACGTTGAGCTTC+TGG + tig0027269:12819-12838 Msa1433360:intron 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG + tig0027269:12928-12947 Msa1433360:CDS 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG + tig0027269:13012-13031 Msa1433360:CDS 45.0%
! GAGGAACACTGTTTCTTCTC+TGG - tig0027269:13045-13064 None:intergenic 45.0%
GAGAAGAAACAGTGTTCCTC+TGG + tig0027269:13045-13064 Msa1433360:CDS 45.0%
! TCATCAGCGTGATTTTGCTG+CGG + tig0027269:13201-13220 Msa1433360:three_prime_UTR 45.0%
!!! ATTTTTATTATTATTACTTT+TGG + tig0027269:11006-11025 Msa1433360:intron 5.0%
ATGGAGAAGGAACGTGAGAG+GGG - tig0027269:10869-10888 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG - tig0027269:10870-10889 None:intergenic 50.0%
TGATGGAGAAGGAACGTGAG+AGG - tig0027269:10871-10890 None:intergenic 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG + tig0027269:10903-10922 Msa1433360:CDS 50.0%
GAGCTGCATTTCTATGAGCC+AGG - tig0027269:11467-11486 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG + tig0027269:11504-11523 Msa1433360:CDS 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG + tig0027269:11777-11796 Msa1433360:intron 50.0%
AAAAATGCATCACGCTCGGC+CGG - tig0027269:11812-11831 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG + tig0027269:11979-11998 Msa1433360:CDS 50.0%
AATACACCCATCTTGGTGGG+TGG + tig0027269:12214-12233 Msa1433360:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG - tig0027269:12362-12381 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG + tig0027269:12364-12383 Msa1433360:CDS 50.0%
GTGGGCATACACCGTTATGA+GGG + tig0027269:12365-12384 Msa1433360:CDS 50.0%
ACACCGTTATGAGGGAGATG+AGG + tig0027269:12373-12392 Msa1433360:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG + tig0027269:12601-12620 Msa1433360:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG + tig0027269:12991-13010 Msa1433360:CDS 50.0%
! TGATTTGCAGCGAATTGCGG+AGG + tig0027269:13015-13034 Msa1433360:CDS 50.0%
TTGTCAATTGCACGGTCCAG+AGG - tig0027269:13064-13083 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG - tig0027269:13117-13136 None:intergenic 50.0%
TCTGTCCAGTAGTCATGGAG+TGG + tig0027269:13151-13170 Msa1433360:three_prime_UTR 50.0%
AACAGCCACTCCATGACTAC+TGG - tig0027269:13159-13178 None:intergenic 50.0%
GTAGTCATGGAGTGGCTGTT+TGG + tig0027269:13159-13178 Msa1433360:three_prime_UTR 50.0%
!! CAGAATTCGGTGACTTGCTG+TGG + tig0027269:13240-13259 Msa1433360:three_prime_UTR 50.0%
AACCTGCTCCCTCCCAACAT+TGG + tig0027269:10771-10790 Msa1433360:five_prime_UTR 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG - tig0027269:11503-11522 None:intergenic 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG + tig0027269:11784-11803 Msa1433360:CDS 55.0%
GCTGCTGTGGACATTGGATC+CGG + tig0027269:11790-11809 Msa1433360:CDS 55.0%
GGCTATCCACCCACCAAGAT+GGG - tig0027269:12223-12242 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG - tig0027269:12224-12243 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG + tig0027269:12826-12845 Msa1433360:intron 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG + tig0027269:12832-12851 Msa1433360:intron 55.0%
AGCCAATGTTGGGAGGGAGC+AGG - tig0027269:10776-10795 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0027269 gene 10762 13604 10762 ID=Msa1433360;Name=Msa1433360
tig0027269 mRNA 10762 13604 10762 ID=Msa1433360-mRNA-1;Parent=Msa1433360;Name=Msa1433360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|0.8|0.66|6|366|315
tig0027269 exon 10762 10924 10762 ID=Msa1433360-mRNA-1:exon:8593;Parent=Msa1433360-mRNA-1
tig0027269 exon 11430 11575 11430 ID=Msa1433360-mRNA-1:exon:8594;Parent=Msa1433360-mRNA-1
tig0027269 exon 11782 12000 11782 ID=Msa1433360-mRNA-1:exon:8595;Parent=Msa1433360-mRNA-1
tig0027269 exon 12350 12562 12350 ID=Msa1433360-mRNA-1:exon:8596;Parent=Msa1433360-mRNA-1
tig0027269 exon 12848 13393 12848 ID=Msa1433360-mRNA-1:exon:8597;Parent=Msa1433360-mRNA-1
tig0027269 exon 13491 13604 13491 ID=Msa1433360-mRNA-1:exon:8598;Parent=Msa1433360-mRNA-1
tig0027269 five_prime_UTR 10762 10848 10762 ID=Msa1433360-mRNA-1:five_prime_utr;Parent=Msa1433360-mRNA-1
tig0027269 CDS 10849 10924 10849 ID=Msa1433360-mRNA-1:cds;Parent=Msa1433360-mRNA-1
tig0027269 CDS 11430 11575 11430 ID=Msa1433360-mRNA-1:cds;Parent=Msa1433360-mRNA-1
tig0027269 CDS 11782 12000 11782 ID=Msa1433360-mRNA-1:cds;Parent=Msa1433360-mRNA-1
tig0027269 CDS 12350 12562 12350 ID=Msa1433360-mRNA-1:cds;Parent=Msa1433360-mRNA-1
tig0027269 CDS 12848 13141 12848 ID=Msa1433360-mRNA-1:cds;Parent=Msa1433360-mRNA-1
tig0027269 three_prime_UTR 13142 13393 13142 ID=Msa1433360-mRNA-1:three_prime_utr;Parent=Msa1433360-mRNA-1
tig0027269 three_prime_UTR 13491 13604 13491 ID=Msa1433360-mRNA-1:three_prime_utr;Parent=Msa1433360-mRNA-1
Gene Sequence

>Msa1433360

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAACGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCATAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGATTTGGAAACTGATTCGGATGATGAATATCTGAAATTATTGAGGGCAGCAATTAAGGGCTTGACCTACCCTGAGAAATATTTTGAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGAGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGATTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAG

Protein sequence

>Msa1433360

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNERLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFIKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFEELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKILLALMGHDE*