Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636540 | XP_013455462.2 | 78.788 | 99 | 16 | 2 | 1 | 97 | 11 | 106 | 1.58e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636540 | A0A072UK96 | 78.788 | 99 | 16 | 2 | 1 | 97 | 1 | 96 | 1.26e-44 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0636540 | -0.812295 | 4.556490e-51 | -8.615850e-47 |
| Msa0011410 | Msa0636540 | -0.808147 | 3.573454e-50 | -8.615850e-47 |
| Msa0011440 | Msa0636540 | -0.806137 | 9.517398e-50 | -8.615850e-47 |
| Msa0017300 | Msa0636540 | -0.814524 | 1.474796e-51 | -8.615850e-47 |
| Msa0028690 | Msa0636540 | 0.822310 | 2.536400e-53 | -8.615850e-47 |
| Msa0044160 | Msa0636540 | 0.829124 | 6.135179e-55 | -8.615850e-47 |
| Msa0046870 | Msa0636540 | 0.811204 | 7.867991e-51 | -8.615850e-47 |
| Msa0049010 | Msa0636540 | 0.896648 | 3.014685e-76 | -8.615850e-47 |
| Msa0062190 | Msa0636540 | 0.817620 | 3.000944e-52 | -8.615850e-47 |
| Msa0065670 | Msa0636540 | -0.801233 | 9.915512e-49 | -8.615850e-47 |
| Msa0072180 | Msa0636540 | 0.819291 | 1.254728e-52 | -8.615850e-47 |
| Msa0073110 | Msa0636540 | 0.804742 | 1.866908e-49 | -8.615850e-47 |
| Msa0095810 | Msa0636540 | -0.815623 | 8.408457e-52 | -8.615850e-47 |
| Msa0105140 | Msa0636540 | -0.800587 | 1.343896e-48 | -8.615850e-47 |
| Msa0106540 | Msa0636540 | 0.814451 | 1.530367e-51 | -8.615850e-47 |
| Msa0119240 | Msa0636540 | 0.809613 | 1.735406e-50 | -8.615850e-47 |
| Msa0120450 | Msa0636540 | 0.805541 | 1.269990e-49 | -8.615850e-47 |
| Msa0603310 | Msa0636540 | 0.810552 | 1.088919e-50 | -8.615850e-47 |
| Msa0616890 | Msa0636540 | -0.802916 | 4.469332e-49 | -8.615850e-47 |
| Msa0636540 | Msa0657710 | 0.828249 | 9.984461e-55 | -8.615850e-47 |
| Msa0636540 | Msa0657720 | 0.813463 | 2.527856e-51 | -8.615850e-47 |
| Msa0636540 | Msa0675630 | 0.829235 | 5.766634e-55 | -8.615850e-47 |
| Msa0636540 | Msa0676570 | -0.823260 | 1.524413e-53 | -8.615850e-47 |
| Msa0636540 | Msa0682110 | 0.802642 | 5.092170e-49 | -8.615850e-47 |
| Msa0636540 | Msa0682160 | 0.807602 | 4.665777e-50 | -8.615850e-47 |
| Msa0636540 | Msa0701800 | -0.800132 | 1.663189e-48 | -8.615850e-47 |
| Msa0636540 | Msa0702790 | 0.811800 | 5.839111e-51 | -8.615850e-47 |
| Msa0636540 | Msa0702800 | 0.834743 | 2.512554e-56 | -8.615850e-47 |
| Msa0636540 | Msa0741040 | 0.805831 | 1.104127e-49 | -8.615850e-47 |
| Msa0636540 | Msa0742370 | -0.826047 | 3.360594e-54 | -8.615850e-47 |
| Msa0636540 | Msa0800120 | 0.811773 | 5.920225e-51 | -8.615850e-47 |
| Msa0636540 | Msa0828950 | 0.810924 | 9.048226e-51 | -8.615850e-47 |
| Msa0636540 | Msa0828960 | 0.829319 | 5.501634e-55 | -8.615850e-47 |
| Msa0636540 | Msa0838210 | 0.808176 | 3.521346e-50 | -8.615850e-47 |
| Msa0636540 | Msa0862480 | -0.827387 | 1.608682e-54 | -8.615850e-47 |
| Msa0636540 | Msa0862740 | 0.807383 | 5.193218e-50 | -8.615850e-47 |
| Msa0636540 | Msa0905570 | 0.815281 | 1.002011e-51 | -8.615850e-47 |
| Msa0636540 | Msa0907880 | 0.805881 | 1.077776e-49 | -8.615850e-47 |
| Msa0636540 | Msa0909260 | 0.823174 | 1.596132e-53 | -8.615850e-47 |
| Msa0636540 | Msa0931680 | 0.819265 | 1.271743e-52 | -8.615850e-47 |
| Msa0636540 | Msa0945030 | 0.801251 | 9.832679e-49 | -8.615850e-47 |
| Msa0636540 | Msa0964400 | -0.809094 | 2.242208e-50 | -8.615850e-47 |
| Msa0636540 | Msa0973080 | -0.804201 | 2.419805e-49 | -8.615850e-47 |
| Msa0636540 | Msa1001120 | 0.804770 | 1.841259e-49 | -8.615850e-47 |
| Msa0636540 | Msa1002550 | -0.802133 | 6.484255e-49 | -8.615850e-47 |
| Msa0636540 | Msa1015360 | 0.813276 | 2.778827e-51 | -8.615850e-47 |
| Msa0636540 | Msa1019420 | 0.800923 | 1.147345e-48 | -8.615850e-47 |
| Msa0636540 | Msa1042300 | 0.807771 | 4.294984e-50 | -8.615850e-47 |
| Msa0636540 | Msa1044250 | 0.819274 | 1.265875e-52 | -8.615850e-47 |
| Msa0636540 | Msa1062060 | 0.813501 | 2.479651e-51 | -8.615850e-47 |
| Msa0636540 | Msa1075090 | 0.804655 | 1.946778e-49 | -8.615850e-47 |
| Msa0636540 | Msa1078120 | -0.805515 | 1.285864e-49 | -8.615850e-47 |
| Msa0636540 | Msa1106590 | 0.803760 | 2.988995e-49 | -8.615850e-47 |
| Msa0636540 | Msa1154320 | 0.810238 | 1.273378e-50 | -8.615850e-47 |
| Msa0636540 | Msa1184680 | 0.840243 | 9.776503e-58 | -8.615850e-47 |
| Msa0636540 | Msa1202800 | 0.812619 | 3.869908e-51 | -8.615850e-47 |
| Msa0636540 | Msa1203650 | 0.822372 | 2.454287e-53 | -8.615850e-47 |
| Msa0636540 | Msa1215540 | -0.800756 | 1.241081e-48 | -8.615850e-47 |
| Msa0636540 | Msa1215740 | 0.811438 | 7.001767e-51 | -8.615850e-47 |
| Msa0636540 | Msa1223710 | 0.802424 | 5.646829e-49 | -8.615850e-47 |
| Msa0636540 | Msa1255210 | 0.817349 | 3.453578e-52 | -8.615850e-47 |
| Msa0636540 | Msa1268360 | 0.814695 | 1.351665e-51 | -8.615850e-47 |
| Msa0636540 | Msa1273320 | 0.807823 | 4.187357e-50 | -8.615850e-47 |
| Msa0636540 | Msa1283930 | 0.824069 | 9.856776e-54 | -8.615850e-47 |
| Msa0636540 | Msa1284020 | 0.846012 | 2.837367e-59 | -8.615850e-47 |
| Msa0636540 | Msa1291070 | -0.803429 | 3.501522e-49 | -8.615850e-47 |
| Msa0636540 | Msa1295650 | 0.819706 | 1.009038e-52 | -8.615850e-47 |
| Msa0636540 | Msa1301280 | -0.847253 | 1.300225e-59 | -8.615850e-47 |
| Msa0636540 | Msa1322960 | 0.816631 | 5.006301e-52 | -8.615850e-47 |
| Msa0636540 | Msa1331570 | -0.808173 | 3.526691e-50 | -8.615850e-47 |
| Msa0636540 | Msa1332420 | 0.804577 | 2.020578e-49 | -8.615850e-47 |
| Msa0636540 | Msa1361980 | 0.816320 | 5.877368e-52 | -8.615850e-47 |
| Msa0636540 | Msa1404810 | -0.803034 | 4.225946e-49 | -8.615850e-47 |
| Msa0636540 | Msa1405830 | 0.814699 | 1.348887e-51 | -8.615850e-47 |
| Msa0636540 | Msa1407810 | 0.836389 | 9.630175e-57 | -8.615850e-47 |
| Msa0636540 | Msa1408390 | 0.800905 | 1.157504e-48 | -8.615850e-47 |
| Msa0636540 | Msa1422860 | 0.834303 | 3.240080e-56 | -8.615850e-47 |
| Msa0636540 | Msa1428230 | -0.805305 | 1.423487e-49 | -8.615850e-47 |
| Msa0636540 | Msa1433360 | 0.840992 | 6.225236e-58 | -8.615850e-47 |
| Msa0636540 | Msa1437780 | 0.837202 | 5.974591e-57 | -8.615850e-47 |
| Msa0636540 | Msa1439930 | 0.820506 | 6.615690e-53 | -8.615850e-47 |
| Msa0636540 | Msa1445530 | 0.814257 | 1.689163e-51 | -8.615850e-47 |
| Msa0636540 | Msa1447100 | 0.803255 | 3.804298e-49 | -8.615850e-47 |
| Msa0636540 | Msa1449900 | 0.822269 | 2.592298e-53 | -8.615850e-47 |
| Msa0636540 | Msa1459130 | -0.801812 | 7.547916e-49 | -8.615850e-47 |
| Msa0121300 | Msa0636540 | 0.814521 | 1.476513e-51 | -8.615850e-47 |
| Msa0127770 | Msa0636540 | 0.809179 | 2.150394e-50 | -8.615850e-47 |
| Msa0136180 | Msa0636540 | -0.801395 | 9.187421e-49 | -8.615850e-47 |
| Msa0141410 | Msa0636540 | 0.801380 | 9.252051e-49 | -8.615850e-47 |
| Msa0151380 | Msa0636540 | -0.812904 | 3.352387e-51 | -8.615850e-47 |
| Msa0151510 | Msa0636540 | -0.820445 | 6.833659e-53 | -8.615850e-47 |
| Msa0166190 | Msa0636540 | 0.815669 | 8.210558e-52 | -8.615850e-47 |
| Msa0168750 | Msa0636540 | 0.819230 | 1.295219e-52 | -8.615850e-47 |
| Msa0183710 | Msa0636540 | 0.809573 | 1.770020e-50 | -8.615850e-47 |
| Msa0211460 | Msa0636540 | 0.809376 | 1.951472e-50 | -8.615850e-47 |
| Msa0212950 | Msa0636540 | -0.804115 | 2.522262e-49 | -8.615850e-47 |
| Msa0217060 | Msa0636540 | 0.830199 | 3.360126e-55 | -8.615850e-47 |
| Msa0224870 | Msa0636540 | 0.824091 | 9.739197e-54 | -8.615850e-47 |
| Msa0225790 | Msa0636540 | -0.802247 | 6.141984e-49 | -8.615850e-47 |
| Msa0375790 | Msa0636540 | 0.813704 | 2.236426e-51 | -8.615850e-47 |
| Msa0412580 | Msa0636540 | -0.804187 | 2.436176e-49 | -8.615850e-47 |
| Msa0428270 | Msa0636540 | -0.805758 | 1.143543e-49 | -8.615850e-47 |
| Msa0437520 | Msa0636540 | 0.827535 | 1.482801e-54 | -8.615850e-47 |
| Msa0480900 | Msa0636540 | -0.801632 | 8.214266e-49 | -8.615850e-47 |
| Msa0241750 | Msa0636540 | 0.818199 | 2.220691e-52 | -8.615850e-47 |
| Msa0253230 | Msa0636540 | -0.813990 | 1.934355e-51 | -8.615850e-47 |
| Msa0256920 | Msa0636540 | 0.806149 | 9.462888e-50 | -8.615850e-47 |
| Msa0279810 | Msa0636540 | 0.812243 | 4.676096e-51 | -8.615850e-47 |
| Msa0282960 | Msa0636540 | 0.800254 | 1.570721e-48 | -8.615850e-47 |
| Msa0299130 | Msa0636540 | -0.805803 | 1.119050e-49 | -8.615850e-47 |
| Msa0318490 | Msa0636540 | 0.804952 | 1.686897e-49 | -8.615850e-47 |
| Msa0319220 | Msa0636540 | 0.806750 | 7.068928e-50 | -8.615850e-47 |
| Msa0326170 | Msa0636540 | -0.816933 | 4.282689e-52 | -8.615850e-47 |
| Msa0331070 | Msa0636540 | -0.803114 | 4.068120e-49 | -8.615850e-47 |
| Msa0345050 | Msa0636540 | 0.802979 | 4.339348e-49 | -8.615850e-47 |
| Msa0356270 | Msa0636540 | 0.818414 | 1.985227e-52 | -8.615850e-47 |
| Msa0534610 | Msa0636540 | 0.808018 | 3.806511e-50 | -8.615850e-47 |
| Msa0560950 | Msa0636540 | 0.803360 | 3.617326e-49 | -8.615850e-47 |
| Msa0567330 | Msa0636540 | 0.843509 | 1.341646e-58 | -8.615850e-47 |
| Msa0567570 | Msa0636540 | 0.815967 | 7.047104e-52 | -8.615850e-47 |
| Msa0576320 | Msa0636540 | 0.835219 | 1.906145e-56 | -8.615850e-47 |
| Msa0580890 | Msa0636540 | -0.800805 | 1.213128e-48 | -8.615850e-47 |
| Msa0596840 | Msa0636540 | 0.827799 | 1.281645e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636540 | MtrunA17_Chr4g0019351 | 78.788 | 99 | 16 | 2 | 1 | 97 | 1 | 96 | 2.43e-48 | 149 |
| Msa0636540 | MtrunA17_Chr4g0019341 | 77.778 | 99 | 17 | 2 | 1 | 97 | 1 | 96 | 5.49e-46 | 142 |
| Msa0636540 | MtrunA17_Chr4g0019361 | 56.122 | 98 | 18 | 2 | 1 | 97 | 1 | 74 | 1.32e-25 | 90.9 |
| Msa0636540 | MtrunA17_Chr4g0018981 | 45.361 | 97 | 34 | 2 | 1 | 97 | 1 | 78 | 6.92e-20 | 76.3 |
| Msa0636540 | MtrunA17_Chr4g0018971 | 46.875 | 96 | 30 | 2 | 1 | 96 | 1 | 75 | 1.05e-18 | 73.2 |
| Msa0636540 | MtrunA17_Chr4g0019021 | 38.739 | 111 | 48 | 4 | 1 | 97 | 1 | 105 | 1.02e-16 | 68.9 |
| Msa0636540 | MtrunA17_Chr8g0368881 | 37.755 | 98 | 46 | 2 | 1 | 97 | 1 | 84 | 1.28e-16 | 68.2 |
| Msa0636540 | MtrunA17_Chr4g0018961 | 42.268 | 97 | 34 | 2 | 1 | 97 | 1 | 75 | 1.01e-14 | 63.2 |
| Msa0636540 | MtrunA17_Chr4g0018931 | 36.735 | 98 | 41 | 2 | 1 | 97 | 1 | 78 | 6.41e-12 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGTGCTCTCTTATTT+TGG | 0.217478 | 4_3:-27195606 | Msa0636540:CDS |
| TTGTGGCCACGTGCTTTATC+AGG | 0.279751 | 4_3:+27195337 | None:intergenic |
| CGTTAGGTTGGATCAATTTA+CGG | 0.318370 | 4_3:-27194844 | Msa0636540:three_prime_UTR |
| TGTATAGTTTCAGATAAAAT+AGG | 0.333321 | 4_3:-27195394 | Msa0636540:intron |
| AATAAGAAGAGACTCCTTGC+TGG | 0.444927 | 4_3:-27195367 | Msa0636540:CDS |
| CTATGAATGATATGGGCGTT+AGG | 0.451730 | 4_3:-27194860 | Msa0636540:exon |
| GAATGATATGGGCGTTAGGT+TGG | 0.467597 | 4_3:-27194856 | Msa0636540:three_prime_UTR |
| GACTCCTTGCAGAAAATTGT+GGG | 0.487595 | 4_3:-27194931 | Msa0636540:CDS |
| GATCAATTTACGGATGAAGT+TGG | 0.531820 | 4_3:-27194834 | Msa0636540:three_prime_UTR |
| AGACTCCTTGCAGAAAATTG+TGG | 0.531866 | 4_3:-27194932 | Msa0636540:CDS |
| AAGTAAAACCTGCAAAATTG+TGG | 0.541805 | 4_3:+27195320 | None:intergenic |
| CGAAAGCTCGAGTGTTGCAC+GGG | 0.550887 | 4_3:-27194741 | Msa0636540:three_prime_UTR |
| TTGCAGAAAATTGTGGGAGT+AGG | 0.564611 | 4_3:-27194925 | Msa0636540:CDS |
| ACACTCGAGCTTTCGACCTA+GGG | 0.574814 | 4_3:+27194749 | None:intergenic |
| TCGAAAGCTCGAGTGTTGCA+CGG | 0.581217 | 4_3:-27194742 | Msa0636540:three_prime_UTR |
| AACACTCGAGCTTTCGACCT+AGG | 0.585121 | 4_3:+27194748 | None:intergenic |
| TACATGGTCCTCATGCTGAT+CGG | 0.594268 | 4_3:-27194901 | Msa0636540:CDS |
| TTTCATCAAAGACATTAGCA+AGG | 0.595257 | 4_3:-27195556 | Msa0636540:CDS |
| AATTGTGGGAGTAGGATACA+TGG | 0.612508 | 4_3:-27194917 | Msa0636540:CDS |
| ATATCATTCATAGAAAATTG+TGG | 0.617375 | 4_3:+27194870 | None:intergenic |
| AGAAGAGACTCCTTGCTGGT+AGG | 0.629830 | 4_3:-27195363 | Msa0636540:CDS |
| TATCAGGCTTCCTACCAGCA+AGG | 0.630061 | 4_3:+27195353 | None:intergenic |
| CAACGTGGCCGATCAGCATG+AGG | 0.638536 | 4_3:+27194893 | None:intergenic |
| CATAGAAAATTGTGGCAACG+TGG | 0.674818 | 4_3:+27194878 | None:intergenic |
| AGGAAGCCTGATAAAGCACG+TGG | 0.728123 | 4_3:-27195343 | Msa0636540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTTGTATTAATATT+TGG | - | chr4_3:27195321-27195340 | Msa0636540:intron | 10.0% |
| !!! | TTTTTTCTTGTATTAATATT+TGG | - | chr4_3:27195321-27195340 | Msa0636540:intron | 10.0% |
| !! | AATAACAAAATGGATATTAT+GGG | + | chr4_3:27194832-27194851 | None:intergenic | 15.0% |
| !! | TATTATTTATGGATATTATG+GGG | + | chr4_3:27195024-27195043 | None:intergenic | 15.0% |
| !! | GTATTATTTATGGATATTAT+GGG | + | chr4_3:27195025-27195044 | None:intergenic | 15.0% |
| !! | AGTATTATTTATGGATATTA+TGG | + | chr4_3:27195026-27195045 | None:intergenic | 15.0% |
| !!! | TATTTTGAGAAAAGAAAAAT+GGG | - | chr4_3:27195260-27195279 | Msa0636540:intron | 15.0% |
| !! | TTGGTAGAAAAAATAAATAA+TGG | - | chr4_3:27195503-27195522 | Msa0636540:intron | 15.0% |
| !! | TGGTAGAAAAAATAAATAAT+GGG | - | chr4_3:27195504-27195523 | Msa0636540:intron | 15.0% |
| !! | AATAACAAAATGGATATTAT+GGG | + | chr4_3:27194832-27194851 | None:intergenic | 15.0% |
| !! | TATTATTTATGGATATTATG+GGG | + | chr4_3:27195024-27195043 | None:intergenic | 15.0% |
| !! | GTATTATTTATGGATATTAT+GGG | + | chr4_3:27195025-27195044 | None:intergenic | 15.0% |
| !! | AGTATTATTTATGGATATTA+TGG | + | chr4_3:27195026-27195045 | None:intergenic | 15.0% |
| !!! | TATTTTGAGAAAAGAAAAAT+GGG | - | chr4_3:27195260-27195279 | Msa0636540:intron | 15.0% |
| !! | TTGGTAGAAAAAATAAATAA+TGG | - | chr4_3:27195503-27195522 | Msa0636540:intron | 15.0% |
| !! | TGGTAGAAAAAATAAATAAT+GGG | - | chr4_3:27195504-27195523 | Msa0636540:intron | 15.0% |
| !! | ATAACAAAATGGATATTATG+GGG | + | chr4_3:27194831-27194850 | None:intergenic | 20.0% |
| !! | CAATAACAAAATGGATATTA+TGG | + | chr4_3:27194833-27194852 | None:intergenic | 20.0% |
| !! | TGTATAGTTTCAGATAAAAT+AGG | - | chr4_3:27194924-27194943 | Msa0636540:CDS | 20.0% |
| !! | TGGATAAAGTTCAATAAATA+AGG | - | chr4_3:27195184-27195203 | Msa0636540:intron | 20.0% |
| !!! | CTATTTTGAGAAAAGAAAAA+TGG | - | chr4_3:27195259-27195278 | Msa0636540:intron | 20.0% |
| !! | ATATCATTCATAGAAAATTG+TGG | + | chr4_3:27195451-27195470 | None:intergenic | 20.0% |
| !!! | ACAATTTTCTATGAATGATA+TGG | - | chr4_3:27195450-27195469 | Msa0636540:intron | 20.0% |
| !!! | CAATTTTCTATGAATGATAT+GGG | - | chr4_3:27195451-27195470 | Msa0636540:intron | 20.0% |
| !! | ATAACAAAATGGATATTATG+GGG | + | chr4_3:27194831-27194850 | None:intergenic | 20.0% |
| !! | CAATAACAAAATGGATATTA+TGG | + | chr4_3:27194833-27194852 | None:intergenic | 20.0% |
| !! | TGTATAGTTTCAGATAAAAT+AGG | - | chr4_3:27194924-27194943 | Msa0636540:CDS | 20.0% |
| !! | TGGATAAAGTTCAATAAATA+AGG | - | chr4_3:27195184-27195203 | Msa0636540:intron | 20.0% |
| !!! | CTATTTTGAGAAAAGAAAAA+TGG | - | chr4_3:27195259-27195278 | Msa0636540:intron | 20.0% |
| !! | ATATCATTCATAGAAAATTG+TGG | + | chr4_3:27195451-27195470 | None:intergenic | 20.0% |
| !!! | ACAATTTTCTATGAATGATA+TGG | - | chr4_3:27195450-27195469 | Msa0636540:intron | 20.0% |
| !!! | CAATTTTCTATGAATGATAT+GGG | - | chr4_3:27195451-27195470 | Msa0636540:intron | 20.0% |
| ! | AAACGACTATTATTTAGAGA+CGG | + | chr4_3:27195053-27195072 | None:intergenic | 25.0% |
| ! | CTCTAAATAATAGTCGTTTA+AGG | - | chr4_3:27195054-27195073 | Msa0636540:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr4_3:27195153-27195172 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr4_3:27195154-27195173 | None:intergenic | 25.0% |
| ! | AAAGAAACAATTATTGTGAG+CGG | - | chr4_3:27195284-27195303 | Msa0636540:intron | 25.0% |
| !!! | TAGTTTGATTTATTTTCCCT+AGG | - | chr4_3:27195553-27195572 | Msa0636540:CDS | 25.0% |
| ! | AAACGACTATTATTTAGAGA+CGG | + | chr4_3:27195053-27195072 | None:intergenic | 25.0% |
| ! | CTCTAAATAATAGTCGTTTA+AGG | - | chr4_3:27195054-27195073 | Msa0636540:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr4_3:27195153-27195172 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr4_3:27195154-27195173 | None:intergenic | 25.0% |
| ! | AAAGAAACAATTATTGTGAG+CGG | - | chr4_3:27195284-27195303 | Msa0636540:intron | 25.0% |
| !!! | TAGTTTGATTTATTTTCCCT+AGG | - | chr4_3:27195553-27195572 | Msa0636540:CDS | 25.0% |
| !!! | AAAGAAGTGCTCTCTTATTT+TGG | - | chr4_3:27194712-27194731 | Msa0636540:three_prime_UTR | 30.0% |
| TTTCATCAAAGACATTAGCA+AGG | - | chr4_3:27194762-27194781 | Msa0636540:three_prime_UTR | 30.0% | |
| ! | GTTGTTCTTGTATTGATGTA+TGG | - | chr4_3:27194895-27194914 | Msa0636540:CDS | 30.0% |
| AAGTAAAACCTGCAAAATTG+TGG | + | chr4_3:27195001-27195020 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr4_3:27195150-27195169 | Msa0636540:intron | 30.0% | |
| !!! | AAAGAAGTGCTCTCTTATTT+TGG | - | chr4_3:27194712-27194731 | Msa0636540:three_prime_UTR | 30.0% |
| TTTCATCAAAGACATTAGCA+AGG | - | chr4_3:27194762-27194781 | Msa0636540:three_prime_UTR | 30.0% | |
| ! | GTTGTTCTTGTATTGATGTA+TGG | - | chr4_3:27194895-27194914 | Msa0636540:CDS | 30.0% |
| AAGTAAAACCTGCAAAATTG+TGG | + | chr4_3:27195001-27195020 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr4_3:27195150-27195169 | Msa0636540:intron | 30.0% | |
| GCGCAAATGCAATAACAAAA+TGG | + | chr4_3:27194842-27194861 | None:intergenic | 35.0% | |
| GACTATTATTTAGAGACGGA+GGG | + | chr4_3:27195049-27195068 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | - | chr4_3:27195164-27195183 | Msa0636540:intron | 35.0% | |
| AAACAATTATTGTGAGCGGA+GGG | - | chr4_3:27195288-27195307 | Msa0636540:intron | 35.0% | |
| !! | CGTTAGGTTGGATCAATTTA+CGG | - | chr4_3:27195474-27195493 | Msa0636540:intron | 35.0% |
| GATCAATTTACGGATGAAGT+TGG | - | chr4_3:27195484-27195503 | Msa0636540:intron | 35.0% | |
| GCGCAAATGCAATAACAAAA+TGG | + | chr4_3:27194842-27194861 | None:intergenic | 35.0% | |
| GACTATTATTTAGAGACGGA+GGG | + | chr4_3:27195049-27195068 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | - | chr4_3:27195164-27195183 | Msa0636540:intron | 35.0% | |
| AAACAATTATTGTGAGCGGA+GGG | - | chr4_3:27195288-27195307 | Msa0636540:intron | 35.0% | |
| !! | CGTTAGGTTGGATCAATTTA+CGG | - | chr4_3:27195474-27195493 | Msa0636540:intron | 35.0% |
| GATCAATTTACGGATGAAGT+TGG | - | chr4_3:27195484-27195503 | Msa0636540:intron | 35.0% | |
| AATAAGAAGAGACTCCTTGC+TGG | - | chr4_3:27194951-27194970 | Msa0636540:CDS | 40.0% | |
| !! | GACGGAGGGAGTATTATTTA+TGG | + | chr4_3:27195035-27195054 | None:intergenic | 40.0% |
| CGACTATTATTTAGAGACGG+AGG | + | chr4_3:27195050-27195069 | None:intergenic | 40.0% | |
| GAAACAATTATTGTGAGCGG+AGG | - | chr4_3:27195287-27195306 | Msa0636540:intron | 40.0% | |
| AGACTCCTTGCAGAAAATTG+TGG | - | chr4_3:27195386-27195405 | Msa0636540:CDS | 40.0% | |
| GACTCCTTGCAGAAAATTGT+GGG | - | chr4_3:27195387-27195406 | Msa0636540:CDS | 40.0% | |
| ! | TACTCCCACAATTTTCTGCA+AGG | + | chr4_3:27195394-27195413 | None:intergenic | 40.0% |
| TTGCAGAAAATTGTGGGAGT+AGG | - | chr4_3:27195393-27195412 | Msa0636540:intron | 40.0% | |
| AATTGTGGGAGTAGGATACA+TGG | - | chr4_3:27195401-27195420 | Msa0636540:intron | 40.0% | |
| CATAGAAAATTGTGGCAACG+TGG | + | chr4_3:27195443-27195462 | None:intergenic | 40.0% | |
| CTATGAATGATATGGGCGTT+AGG | - | chr4_3:27195458-27195477 | Msa0636540:intron | 40.0% | |
| AATAAGAAGAGACTCCTTGC+TGG | - | chr4_3:27194951-27194970 | Msa0636540:CDS | 40.0% | |
| !! | GACGGAGGGAGTATTATTTA+TGG | + | chr4_3:27195035-27195054 | None:intergenic | 40.0% |
| CGACTATTATTTAGAGACGG+AGG | + | chr4_3:27195050-27195069 | None:intergenic | 40.0% | |
| GAAACAATTATTGTGAGCGG+AGG | - | chr4_3:27195287-27195306 | Msa0636540:intron | 40.0% | |
| AGACTCCTTGCAGAAAATTG+TGG | - | chr4_3:27195386-27195405 | Msa0636540:CDS | 40.0% | |
| GACTCCTTGCAGAAAATTGT+GGG | - | chr4_3:27195387-27195406 | Msa0636540:CDS | 40.0% | |
| ! | TACTCCCACAATTTTCTGCA+AGG | + | chr4_3:27195394-27195413 | None:intergenic | 40.0% |
| TTGCAGAAAATTGTGGGAGT+AGG | - | chr4_3:27195393-27195412 | Msa0636540:intron | 40.0% | |
| AATTGTGGGAGTAGGATACA+TGG | - | chr4_3:27195401-27195420 | Msa0636540:intron | 40.0% | |
| CATAGAAAATTGTGGCAACG+TGG | + | chr4_3:27195443-27195462 | None:intergenic | 40.0% | |
| CTATGAATGATATGGGCGTT+AGG | - | chr4_3:27195458-27195477 | Msa0636540:intron | 40.0% | |
| TATGGGGAAGTTCACGTACT+TGG | + | chr4_3:27194815-27194834 | None:intergenic | 45.0% | |
| TACATGGTCCTCATGCTGAT+CGG | - | chr4_3:27195417-27195436 | Msa0636540:intron | 45.0% | |
| GAATGATATGGGCGTTAGGT+TGG | - | chr4_3:27195462-27195481 | Msa0636540:intron | 45.0% | |
| TATGGGGAAGTTCACGTACT+TGG | + | chr4_3:27194815-27194834 | None:intergenic | 45.0% | |
| TACATGGTCCTCATGCTGAT+CGG | - | chr4_3:27195417-27195436 | Msa0636540:intron | 45.0% | |
| GAATGATATGGGCGTTAGGT+TGG | - | chr4_3:27195462-27195481 | Msa0636540:intron | 45.0% | |
| AGAAGAGACTCCTTGCTGGT+AGG | - | chr4_3:27194955-27194974 | Msa0636540:CDS | 50.0% | |
| TATCAGGCTTCCTACCAGCA+AGG | + | chr4_3:27194968-27194987 | None:intergenic | 50.0% | |
| AGGAAGCCTGATAAAGCACG+TGG | - | chr4_3:27194975-27194994 | Msa0636540:intron | 50.0% | |
| TTGTGGCCACGTGCTTTATC+AGG | + | chr4_3:27194984-27195003 | None:intergenic | 50.0% | |
| ACACTCGAGCTTTCGACCTA+GGG | + | chr4_3:27195572-27195591 | None:intergenic | 50.0% | |
| AACACTCGAGCTTTCGACCT+AGG | + | chr4_3:27195573-27195592 | None:intergenic | 50.0% | |
| ! | TCGAAAGCTCGAGTGTTGCA+CGG | - | chr4_3:27195576-27195595 | Msa0636540:CDS | 50.0% |
| AGAAGAGACTCCTTGCTGGT+AGG | - | chr4_3:27194955-27194974 | Msa0636540:CDS | 50.0% | |
| TATCAGGCTTCCTACCAGCA+AGG | + | chr4_3:27194968-27194987 | None:intergenic | 50.0% | |
| AGGAAGCCTGATAAAGCACG+TGG | - | chr4_3:27194975-27194994 | Msa0636540:intron | 50.0% | |
| TTGTGGCCACGTGCTTTATC+AGG | + | chr4_3:27194984-27195003 | None:intergenic | 50.0% | |
| ACACTCGAGCTTTCGACCTA+GGG | + | chr4_3:27195572-27195591 | None:intergenic | 50.0% | |
| AACACTCGAGCTTTCGACCT+AGG | + | chr4_3:27195573-27195592 | None:intergenic | 50.0% | |
| ! | TCGAAAGCTCGAGTGTTGCA+CGG | - | chr4_3:27195576-27195595 | Msa0636540:CDS | 50.0% |
| ! | GCACGTGGCCACAATTTTGC+AGG | - | chr4_3:27194990-27195009 | Msa0636540:intron | 55.0% |
| ! | CGAAAGCTCGAGTGTTGCAC+GGG | - | chr4_3:27195577-27195596 | Msa0636540:CDS | 55.0% |
| ! | GCACGTGGCCACAATTTTGC+AGG | - | chr4_3:27194990-27195009 | Msa0636540:intron | 55.0% |
| ! | CGAAAGCTCGAGTGTTGCAC+GGG | - | chr4_3:27195577-27195596 | Msa0636540:CDS | 55.0% |
| CAACGTGGCCGATCAGCATG+AGG | + | chr4_3:27195428-27195447 | None:intergenic | 60.0% | |
| CAACGTGGCCGATCAGCATG+AGG | + | chr4_3:27195428-27195447 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 27194694 | 27195646 | 27194694 | ID=Msa0636540;Name=Msa0636540 |
| chr4_3 | mRNA | 27194694 | 27195646 | 27194694 | ID=Msa0636540-mRNA-1;Parent=Msa0636540;Name=Msa0636540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=10|1|1|1|1|1|3|183|97 |
| chr4_3 | exon | 27194694 | 27194977 | 27194694 | ID=Msa0636540-mRNA-1:exon:6754;Parent=Msa0636540-mRNA-1 |
| chr4_3 | exon | 27195329 | 27195409 | 27195329 | ID=Msa0636540-mRNA-1:exon:6753;Parent=Msa0636540-mRNA-1 |
| chr4_3 | exon | 27195525 | 27195646 | 27195525 | ID=Msa0636540-mRNA-1:exon:6752;Parent=Msa0636540-mRNA-1 |
| chr4_3 | five_prime_UTR | 27195637 | 27195646 | 27195637 | ID=Msa0636540-mRNA-1:five_prime_utr;Parent=Msa0636540-mRNA-1 |
| chr4_3 | CDS | 27195525 | 27195636 | 27195525 | ID=Msa0636540-mRNA-1:cds;Parent=Msa0636540-mRNA-1 |
| chr4_3 | CDS | 27195329 | 27195409 | 27195329 | ID=Msa0636540-mRNA-1:cds;Parent=Msa0636540-mRNA-1 |
| chr4_3 | CDS | 27194877 | 27194977 | 27194877 | ID=Msa0636540-mRNA-1:cds;Parent=Msa0636540-mRNA-1 |
| chr4_3 | three_prime_UTR | 27194694 | 27194876 | 27194694 | ID=Msa0636540-mRNA-1:three_prime_utr;Parent=Msa0636540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
