Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437520 | XP_013470285.1 | 95.026 | 382 | 15 | 1 | 1 | 378 | 1 | 382 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437520 | sp|Q940H3|TBL36_ARATH | 61.478 | 379 | 132 | 6 | 2 | 376 | 4 | 372 | 1.33e-171 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437520 | A0A072VSC4 | 95.026 | 382 | 15 | 1 | 1 | 378 | 1 | 382 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0437520 | 0.805000 | 1.648387e-49 | -8.615850e-47 |
| Msa0013270 | Msa0437520 | 0.821505 | 3.896891e-53 | -8.615850e-47 |
| Msa0025160 | Msa0437520 | 0.837017 | 6.660849e-57 | -8.615850e-47 |
| Msa0033220 | Msa0437520 | 0.805399 | 1.360562e-49 | -8.615850e-47 |
| Msa0044160 | Msa0437520 | 0.991356 | 3.234834e-187 | -8.615850e-47 |
| Msa0045810 | Msa0437520 | 0.837392 | 5.339719e-57 | -8.615850e-47 |
| Msa0046200 | Msa0437520 | 0.811174 | 7.988028e-51 | -8.615850e-47 |
| Msa0049010 | Msa0437520 | 0.800479 | 1.413721e-48 | -8.615850e-47 |
| Msa0062190 | Msa0437520 | 0.832512 | 9.064262e-56 | -8.615850e-47 |
| Msa0063940 | Msa0437520 | 0.809206 | 2.121562e-50 | -8.615850e-47 |
| Msa0072520 | Msa0437520 | 0.814236 | 1.707702e-51 | -8.615850e-47 |
| Msa0077340 | Msa0437520 | 0.832501 | 9.117820e-56 | -8.615850e-47 |
| Msa0077560 | Msa0437520 | 0.838887 | 2.201923e-57 | -8.615850e-47 |
| Msa0106540 | Msa0437520 | 0.833934 | 4.008047e-56 | -8.615850e-47 |
| Msa0119240 | Msa0437520 | 0.805351 | 1.392295e-49 | -8.615850e-47 |
| Msa0123070 | Msa0437520 | 0.808542 | 2.942134e-50 | -8.615850e-47 |
| Msa0124910 | Msa0437520 | 0.839682 | 1.369291e-57 | -8.615850e-47 |
| Msa0125360 | Msa0437520 | 0.840263 | 9.662464e-58 | -8.615850e-47 |
| Msa0127770 | Msa0437520 | 0.979831 | 7.700234e-149 | -8.615850e-47 |
| Msa0139500 | Msa0437520 | 0.825371 | 4.862864e-54 | -8.615850e-47 |
| Msa0142430 | Msa0437520 | 0.822523 | 2.263292e-53 | -8.615850e-47 |
| Msa0143590 | Msa0437520 | 0.802835 | 4.645351e-49 | -8.615850e-47 |
| Msa0146930 | Msa0437520 | 0.802944 | 4.410265e-49 | -8.615850e-47 |
| Msa0165640 | Msa0437520 | 0.805581 | 1.245774e-49 | -8.615850e-47 |
| Msa0169410 | Msa0437520 | 0.804545 | 2.052375e-49 | -8.615850e-47 |
| Msa0183710 | Msa0437520 | 0.984796 | 1.296089e-161 | -8.615850e-47 |
| Msa0184500 | Msa0437520 | 0.808597 | 2.863911e-50 | -8.615850e-47 |
| Msa0203080 | Msa0437520 | 0.844677 | 6.517794e-59 | -8.615850e-47 |
| Msa0204950 | Msa0437520 | 0.814098 | 1.831518e-51 | -8.615850e-47 |
| Msa0209140 | Msa0437520 | 0.800522 | 1.385339e-48 | -8.615850e-47 |
| Msa0235290 | Msa0437520 | 0.832690 | 8.184081e-56 | -8.615850e-47 |
| Msa0365210 | Msa0437520 | 0.816809 | 4.567460e-52 | -8.615850e-47 |
| Msa0375640 | Msa0437520 | 0.846180 | 2.553750e-59 | -8.615850e-47 |
| Msa0386880 | Msa0437520 | 0.805562 | 1.257470e-49 | -8.615850e-47 |
| Msa0387930 | Msa0437520 | 0.807279 | 5.463697e-50 | -8.615850e-47 |
| Msa0401970 | Msa0437520 | 0.807142 | 5.840432e-50 | -8.615850e-47 |
| Msa0402070 | Msa0437520 | -0.804847 | 1.774591e-49 | -8.615850e-47 |
| Msa0424140 | Msa0437520 | 0.801703 | 7.945649e-49 | -8.615850e-47 |
| Msa0424160 | Msa0437520 | 0.842871 | 1.983966e-58 | -8.615850e-47 |
| Msa0432010 | Msa0437520 | 0.813092 | 3.048592e-51 | -8.615850e-47 |
| Msa0437480 | Msa0437520 | 0.854719 | 1.020428e-61 | -8.615850e-47 |
| Msa0437520 | Msa0440350 | 0.863504 | 2.375573e-64 | -8.615850e-47 |
| Msa0437520 | Msa0481890 | 0.811377 | 7.218728e-51 | -8.615850e-47 |
| Msa0437520 | Msa0484210 | -0.811491 | 6.817243e-51 | -8.615850e-47 |
| Msa0437520 | Msa0490430 | 0.807633 | 4.594229e-50 | -8.615850e-47 |
| Msa0437520 | Msa0515800 | 0.830788 | 2.411353e-55 | -8.615850e-47 |
| Msa0437520 | Msa0529030 | 0.805116 | 1.559248e-49 | -8.615850e-47 |
| Msa0437520 | Msa0543560 | 0.809719 | 1.646393e-50 | -8.615850e-47 |
| Msa0437520 | Msa0554880 | 0.808536 | 2.950862e-50 | -8.615850e-47 |
| Msa0437520 | Msa0565700 | 0.810181 | 1.309728e-50 | -8.615850e-47 |
| Msa0437520 | Msa0567330 | 0.830042 | 3.668420e-55 | -8.615850e-47 |
| Msa0437520 | Msa0567570 | 0.801859 | 7.379564e-49 | -8.615850e-47 |
| Msa0437520 | Msa0574900 | 0.832900 | 7.260125e-56 | -8.615850e-47 |
| Msa0437520 | Msa0576320 | 0.822045 | 2.922168e-53 | -8.615850e-47 |
| Msa0437520 | Msa0579080 | 0.803222 | 3.863984e-49 | -8.615850e-47 |
| Msa0437520 | Msa0579160 | 0.817457 | 3.265476e-52 | -8.615850e-47 |
| Msa0437520 | Msa0579220 | 0.816368 | 5.734388e-52 | -8.615850e-47 |
| Msa0437520 | Msa0581060 | 0.817637 | 2.974049e-52 | -8.615850e-47 |
| Msa0437520 | Msa0610690 | 0.821236 | 4.495629e-53 | -8.615850e-47 |
| Msa0437520 | Msa0610700 | -0.817862 | 2.646574e-52 | -8.615850e-47 |
| Msa0437520 | Msa0618680 | 0.801749 | 7.773792e-49 | -8.615850e-47 |
| Msa0437520 | Msa0636540 | 0.827535 | 1.482801e-54 | -8.615850e-47 |
| Msa0437520 | Msa0648970 | 0.810916 | 9.084877e-51 | -8.615850e-47 |
| Msa0437520 | Msa0657710 | 0.843010 | 1.822755e-58 | -8.615850e-47 |
| Msa0437520 | Msa0657720 | 0.830038 | 3.676907e-55 | -8.615850e-47 |
| Msa0437520 | Msa0662820 | 0.804493 | 2.103553e-49 | -8.615850e-47 |
| Msa0437520 | Msa0674480 | 0.809259 | 2.066974e-50 | -8.615850e-47 |
| Msa0437520 | Msa0682770 | 0.808425 | 3.116800e-50 | -8.615850e-47 |
| Msa0437520 | Msa0686040 | 0.800260 | 1.566710e-48 | -8.615850e-47 |
| Msa0437520 | Msa0687580 | 0.825557 | 4.393155e-54 | -8.615850e-47 |
| Msa0437520 | Msa0692790 | 0.814699 | 1.349018e-51 | -8.615850e-47 |
| Msa0437520 | Msa0702790 | 0.830290 | 3.191524e-55 | -8.615850e-47 |
| Msa0437520 | Msa0702800 | 0.844967 | 5.445268e-59 | -8.615850e-47 |
| Msa0437520 | Msa0703950 | 0.852969 | 3.255992e-61 | -8.615850e-47 |
| Msa0437520 | Msa0709440 | 0.812436 | 4.243814e-51 | -8.615850e-47 |
| Msa0437520 | Msa0722890 | 0.839303 | 1.717993e-57 | -8.615850e-47 |
| Msa0437520 | Msa0723090 | 0.861796 | 7.977489e-64 | -8.615850e-47 |
| Msa0437520 | Msa0726170 | -0.801304 | 9.592378e-49 | -8.615850e-47 |
| Msa0437520 | Msa0734250 | 0.800084 | 1.700967e-48 | -8.615850e-47 |
| Msa0437520 | Msa0742370 | -0.802188 | 6.315528e-49 | -8.615850e-47 |
| Msa0437520 | Msa0745140 | 0.833245 | 5.958177e-56 | -8.615850e-47 |
| Msa0437520 | Msa0772220 | 0.849797 | 2.567951e-60 | -8.615850e-47 |
| Msa0437520 | Msa0776640 | 0.834910 | 2.281074e-56 | -8.615850e-47 |
| Msa0437520 | Msa0780910 | 0.802674 | 5.016375e-49 | -8.615850e-47 |
| Msa0437520 | Msa0795750 | 0.835550 | 1.572077e-56 | -8.615850e-47 |
| Msa0437520 | Msa0811690 | 0.802588 | 5.224469e-49 | -8.615850e-47 |
| Msa0437520 | Msa0821160 | 0.812848 | 3.447715e-51 | -8.615850e-47 |
| Msa0437520 | Msa0825920 | 0.829353 | 5.396915e-55 | -8.615850e-47 |
| Msa0437520 | Msa0828950 | 0.827448 | 1.555564e-54 | -8.615850e-47 |
| Msa0437520 | Msa0828960 | 0.846904 | 1.620034e-59 | -8.615850e-47 |
| Msa0437520 | Msa0838620 | -0.818307 | 2.098821e-52 | -8.615850e-47 |
| Msa0437520 | Msa0851850 | 0.823426 | 1.393991e-53 | -8.615850e-47 |
| Msa0437520 | Msa0865420 | 0.852688 | 3.918052e-61 | -8.615850e-47 |
| Msa0437520 | Msa0877360 | 0.807651 | 4.554577e-50 | -8.615850e-47 |
| Msa0437520 | Msa0878280 | 0.813204 | 2.881718e-51 | -8.615850e-47 |
| Msa0437520 | Msa0880910 | 0.832212 | 1.075381e-55 | -8.615850e-47 |
| Msa0437520 | Msa0903340 | 0.809238 | 2.089016e-50 | -8.615850e-47 |
| Msa0437520 | Msa0909260 | 0.817661 | 2.937492e-52 | -8.615850e-47 |
| Msa0437520 | Msa0930770 | 0.809941 | 1.475034e-50 | -8.615850e-47 |
| Msa0437520 | Msa0931680 | 0.813091 | 3.050539e-51 | -8.615850e-47 |
| Msa0437520 | Msa0942210 | 0.808639 | 2.805941e-50 | -8.615850e-47 |
| Msa0437520 | Msa0942220 | 0.803032 | 4.229888e-49 | -8.615850e-47 |
| Msa0437520 | Msa0967780 | 0.843938 | 1.029765e-58 | -8.615850e-47 |
| Msa0437520 | Msa0980290 | 0.806969 | 6.354786e-50 | -8.615850e-47 |
| Msa0437520 | Msa1013190 | 0.809704 | 1.659033e-50 | -8.615850e-47 |
| Msa0437520 | Msa1022420 | 0.833410 | 5.420264e-56 | -8.615850e-47 |
| Msa0437520 | Msa1029820 | 0.800910 | 1.154861e-48 | -8.615850e-47 |
| Msa0437520 | Msa1031410 | 0.815115 | 1.090568e-51 | -8.615850e-47 |
| Msa0437520 | Msa1041060 | 0.809209 | 2.118636e-50 | -8.615850e-47 |
| Msa0437520 | Msa1044250 | 0.869131 | 3.895282e-66 | -8.615850e-47 |
| Msa0437520 | Msa1045230 | 0.814212 | 1.728495e-51 | -8.615850e-47 |
| Msa0437520 | Msa1045280 | 0.803447 | 3.470437e-49 | -8.615850e-47 |
| Msa0437520 | Msa1068940 | 0.800741 | 1.250332e-48 | -8.615850e-47 |
| Msa0437520 | Msa1072940 | 0.809537 | 1.801654e-50 | -8.615850e-47 |
| Msa0437520 | Msa1074900 | 0.810510 | 1.111883e-50 | -8.615850e-47 |
| Msa0437520 | Msa1081970 | 0.846122 | 2.648390e-59 | -8.615850e-47 |
| Msa0437520 | Msa1082410 | 0.840504 | 8.354324e-58 | -8.615850e-47 |
| Msa0437520 | Msa1084530 | 0.801879 | 7.310061e-49 | -8.615850e-47 |
| Msa0437520 | Msa1088320 | 0.808633 | 2.813821e-50 | -8.615850e-47 |
| Msa0437520 | Msa1106590 | 0.852893 | 3.422366e-61 | -8.615850e-47 |
| Msa0437520 | Msa1125820 | 0.808035 | 3.774483e-50 | -8.615850e-47 |
| Msa0437520 | Msa1125990 | 0.809776 | 1.600513e-50 | -8.615850e-47 |
| Msa0437520 | Msa1145300 | 0.800439 | 1.440364e-48 | -8.615850e-47 |
| Msa0437520 | Msa1147700 | 0.818627 | 1.775981e-52 | -8.615850e-47 |
| Msa0437520 | Msa1149910 | 0.822001 | 2.992319e-53 | -8.615850e-47 |
| Msa0437520 | Msa1158200 | 0.806567 | 7.725010e-50 | -8.615850e-47 |
| Msa0437520 | Msa1165460 | 0.821083 | 4.873977e-53 | -8.615850e-47 |
| Msa0437520 | Msa1165760 | 0.814289 | 1.661810e-51 | -8.615850e-47 |
| Msa0437520 | Msa1169660 | 0.827630 | 1.406764e-54 | -8.615850e-47 |
| Msa0437520 | Msa1171290 | 0.814393 | 1.576534e-51 | -8.615850e-47 |
| Msa0437520 | Msa1192360 | 0.809391 | 1.936197e-50 | -8.615850e-47 |
| Msa0437520 | Msa1194240 | 0.817453 | 3.272678e-52 | -8.615850e-47 |
| Msa0437520 | Msa1242160 | 0.805795 | 1.123471e-49 | -8.615850e-47 |
| Msa0437520 | Msa1254100 | 0.827537 | 1.481493e-54 | -8.615850e-47 |
| Msa0437520 | Msa1262590 | 0.836630 | 8.358874e-57 | -8.615850e-47 |
| Msa0437520 | Msa1275160 | 0.803499 | 3.386526e-49 | -8.615850e-47 |
| Msa0437520 | Msa1283930 | 0.833455 | 5.280603e-56 | -8.615850e-47 |
| Msa0437520 | Msa1284020 | 0.802369 | 5.797736e-49 | -8.615850e-47 |
| Msa0437520 | Msa1322960 | 0.825893 | 3.656268e-54 | -8.615850e-47 |
| Msa0437520 | Msa1323070 | 0.814346 | 1.614550e-51 | -8.615850e-47 |
| Msa0437520 | Msa1326710 | 0.813951 | 1.973268e-51 | -8.615850e-47 |
| Msa0437520 | Msa1327800 | 0.814574 | 1.437406e-51 | -8.615850e-47 |
| Msa0437520 | Msa1339990 | 0.800524 | 1.384006e-48 | -8.615850e-47 |
| Msa0437520 | Msa1341840 | 0.808746 | 2.662293e-50 | -8.615850e-47 |
| Msa0437520 | Msa1365820 | 0.810717 | 1.003036e-50 | -8.615850e-47 |
| Msa0437520 | Msa1366610 | 0.814308 | 1.646034e-51 | -8.615850e-47 |
| Msa0437520 | Msa1368390 | 0.833975 | 3.915089e-56 | -8.615850e-47 |
| Msa0437520 | Msa1368750 | 0.814777 | 1.295910e-51 | -8.615850e-47 |
| Msa0437520 | Msa1374790 | 0.808330 | 3.265103e-50 | -8.615850e-47 |
| Msa0437520 | Msa1381030 | 0.806381 | 8.455724e-50 | -8.615850e-47 |
| Msa0437520 | Msa1387440 | 0.802721 | 4.904873e-49 | -8.615850e-47 |
| Msa0437520 | Msa1391500 | 0.821963 | 3.053170e-53 | -8.615850e-47 |
| Msa0437520 | Msa1396200 | -0.807277 | 5.467627e-50 | -8.615850e-47 |
| Msa0437520 | Msa1398810 | 0.819039 | 1.431875e-52 | -8.615850e-47 |
| Msa0437520 | Msa1405460 | 0.808364 | 3.212313e-50 | -8.615850e-47 |
| Msa0437520 | Msa1405830 | 0.833446 | 5.309708e-56 | -8.615850e-47 |
| Msa0437520 | Msa1407810 | 0.821098 | 4.837403e-53 | -8.615850e-47 |
| Msa0437520 | Msa1407840 | 0.822817 | 1.933139e-53 | -8.615850e-47 |
| Msa0437520 | Msa1413130 | 0.815061 | 1.121024e-51 | -8.615850e-47 |
| Msa0437520 | Msa1418080 | 0.809989 | 1.440545e-50 | -8.615850e-47 |
| Msa0437520 | Msa1422860 | 0.827970 | 1.165355e-54 | -8.615850e-47 |
| Msa0437520 | Msa1428230 | -0.804682 | 1.920937e-49 | -8.615850e-47 |
| Msa0437520 | Msa1433360 | 0.841387 | 4.901741e-58 | -8.615850e-47 |
| Msa0437520 | Msa1437780 | 0.820280 | 7.455727e-53 | -8.615850e-47 |
| Msa0437520 | Msa1437810 | 0.822317 | 2.527489e-53 | -8.615850e-47 |
| Msa0437520 | Msa1439250 | 0.808573 | 2.897881e-50 | -8.615850e-47 |
| Msa0437520 | Msa1439930 | 0.800303 | 1.535566e-48 | -8.615850e-47 |
| Msa0437520 | Msa1440430 | 0.811819 | 5.785484e-51 | -8.615850e-47 |
| Msa0437520 | Msa1445530 | 0.816228 | 6.162752e-52 | -8.615850e-47 |
| Msa0437520 | Msa1447100 | 0.982798 | 4.996792e-156 | -8.615850e-47 |
| Msa0437520 | Msa1449900 | 0.972935 | 1.386274e-135 | -8.615850e-47 |
| Msa0437520 | Msa1451820 | 0.813314 | 2.724722e-51 | -8.615850e-47 |
| Msa0437520 | Msa1454500 | 0.816803 | 4.581502e-52 | -8.615850e-47 |
| Msa0437520 | Msa1457770 | 0.819980 | 8.732028e-53 | -8.615850e-47 |
| Msa0437520 | Msa1461370 | 0.807737 | 4.366988e-50 | -8.615850e-47 |
| Msa0241750 | Msa0437520 | 0.805237 | 1.471101e-49 | -8.615850e-47 |
| Msa0246210 | Msa0437520 | 0.818923 | 1.521121e-52 | -8.615850e-47 |
| Msa0249850 | Msa0437520 | 0.812026 | 5.215612e-51 | -8.615850e-47 |
| Msa0269210 | Msa0437520 | 0.802556 | 5.305431e-49 | -8.615850e-47 |
| Msa0276860 | Msa0437520 | 0.842163 | 3.058500e-58 | -8.615850e-47 |
| Msa0281470 | Msa0437520 | 0.827176 | 1.807791e-54 | -8.615850e-47 |
| Msa0284800 | Msa0437520 | 0.847826 | 9.046265e-60 | -8.615850e-47 |
| Msa0288620 | Msa0437520 | 0.811941 | 5.440850e-51 | -8.615850e-47 |
| Msa0307270 | Msa0437520 | 0.812625 | 3.858629e-51 | -8.615850e-47 |
| Msa0313900 | Msa0437520 | 0.848337 | 6.536742e-60 | -8.615850e-47 |
| Msa0318490 | Msa0437520 | 0.814702 | 1.346394e-51 | -8.615850e-47 |
| Msa0320600 | Msa0437520 | 0.809197 | 2.130909e-50 | -8.615850e-47 |
| Msa0326710 | Msa0437520 | 0.817021 | 4.091607e-52 | -8.615850e-47 |
| Msa0330520 | Msa0437520 | 0.864852 | 9.020723e-65 | -8.615850e-47 |
| Msa0334660 | Msa0437520 | 0.803171 | 3.960056e-49 | -8.615850e-47 |
| Msa0354840 | Msa0437520 | 0.861704 | 8.511558e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437520 | MtrunA17_Chr1g0210771 | 95.026 | 382 | 15 | 1 | 1 | 378 | 1 | 382 | 0.0 | 764 |
| Msa0437520 | MtrunA17_Chr1g0171171 | 73.351 | 379 | 96 | 3 | 1 | 378 | 1 | 375 | 0.0 | 602 |
| Msa0437520 | MtrunA17_Chr3g0105301 | 42.216 | 334 | 175 | 5 | 55 | 374 | 43 | 372 | 5.50e-99 | 298 |
| Msa0437520 | MtrunA17_Chr5g0430371 | 40.233 | 343 | 181 | 5 | 53 | 374 | 56 | 395 | 1.23e-98 | 298 |
| Msa0437520 | MtrunA17_Chr2g0283581 | 42.296 | 331 | 170 | 6 | 55 | 378 | 42 | 358 | 1.42e-95 | 289 |
| Msa0437520 | MtrunA17_Chr4g0006991 | 42.075 | 347 | 177 | 8 | 53 | 378 | 84 | 427 | 1.38e-92 | 284 |
| Msa0437520 | MtrunA17_Chr3g0097891 | 42.216 | 334 | 169 | 7 | 55 | 378 | 31 | 350 | 3.40e-92 | 280 |
| Msa0437520 | MtrunA17_Chr2g0325481 | 39.458 | 332 | 180 | 6 | 54 | 378 | 49 | 366 | 1.17e-91 | 280 |
| Msa0437520 | MtrunA17_Chr7g0258851 | 38.947 | 380 | 208 | 8 | 19 | 378 | 212 | 587 | 1.09e-89 | 281 |
| Msa0437520 | MtrunA17_Chr2g0314791 | 42.687 | 335 | 167 | 8 | 53 | 378 | 27 | 345 | 2.39e-89 | 273 |
| Msa0437520 | MtrunA17_Chr1g0175671 | 41.210 | 347 | 184 | 7 | 50 | 378 | 165 | 509 | 3.83e-88 | 275 |
| Msa0437520 | MtrunA17_Chr2g0314801 | 39.339 | 333 | 181 | 6 | 51 | 374 | 29 | 349 | 1.99e-87 | 268 |
| Msa0437520 | MtrunA17_Chr5g0413851 | 37.534 | 373 | 208 | 8 | 14 | 378 | 4 | 359 | 8.61e-87 | 267 |
| Msa0437520 | MtrunA17_Chr5g0413271 | 37.265 | 373 | 217 | 9 | 15 | 378 | 112 | 476 | 1.60e-85 | 268 |
| Msa0437520 | MtrunA17_Chr7g0269991 | 37.015 | 335 | 188 | 5 | 55 | 374 | 137 | 463 | 6.24e-85 | 265 |
| Msa0437520 | MtrunA17_Chr4g0041011 | 37.725 | 334 | 181 | 8 | 55 | 378 | 47 | 363 | 7.11e-85 | 262 |
| Msa0437520 | MtrunA17_Chr7g0242701 | 40.058 | 347 | 184 | 8 | 53 | 378 | 84 | 427 | 9.31e-85 | 264 |
| Msa0437520 | MtrunA17_Chr1g0213281 | 37.662 | 385 | 215 | 8 | 17 | 378 | 133 | 515 | 2.22e-84 | 266 |
| Msa0437520 | MtrunA17_Chr3g0113671 | 40.517 | 348 | 171 | 10 | 55 | 374 | 106 | 445 | 6.37e-83 | 259 |
| Msa0437520 | MtrunA17_Chr8g0360521 | 39.595 | 346 | 180 | 10 | 55 | 378 | 71 | 409 | 1.66e-82 | 258 |
| Msa0437520 | MtrunA17_Chr4g0045951 | 37.234 | 376 | 206 | 10 | 12 | 378 | 8 | 362 | 1.94e-82 | 256 |
| Msa0437520 | MtrunA17_Chr4g0045941 | 35.756 | 344 | 201 | 6 | 42 | 378 | 20 | 350 | 4.99e-82 | 254 |
| Msa0437520 | MtrunA17_Chr4g0005491 | 35.294 | 391 | 223 | 11 | 10 | 378 | 25 | 407 | 1.32e-81 | 255 |
| Msa0437520 | MtrunA17_Chr4g0071391 | 34.896 | 384 | 220 | 8 | 21 | 378 | 67 | 446 | 4.25e-81 | 255 |
| Msa0437520 | MtrunA17_Chr5g0437291 | 40.227 | 353 | 172 | 11 | 53 | 374 | 163 | 507 | 6.67e-80 | 254 |
| Msa0437520 | MtrunA17_Chr3g0085081 | 35.211 | 355 | 207 | 7 | 30 | 376 | 7 | 346 | 1.30e-79 | 248 |
| Msa0437520 | MtrunA17_Chr3g0091031 | 35.211 | 355 | 207 | 7 | 30 | 376 | 7 | 346 | 1.16e-78 | 245 |
| Msa0437520 | MtrunA17_Chr3g0114101 | 35.969 | 392 | 222 | 10 | 14 | 378 | 41 | 430 | 3.34e-78 | 247 |
| Msa0437520 | MtrunA17_Chr4g0068111 | 36.413 | 368 | 209 | 8 | 31 | 378 | 91 | 453 | 7.61e-78 | 247 |
| Msa0437520 | MtrunA17_Chr3g0085071 | 34.473 | 351 | 197 | 7 | 34 | 376 | 36 | 361 | 3.79e-76 | 239 |
| Msa0437520 | MtrunA17_Chr5g0437601 | 37.971 | 345 | 190 | 9 | 55 | 378 | 83 | 424 | 5.62e-76 | 241 |
| Msa0437520 | MtrunA17_Chr7g0243301 | 34.870 | 347 | 204 | 9 | 54 | 378 | 63 | 409 | 7.46e-74 | 235 |
| Msa0437520 | MtrunA17_Chr8g0368461 | 34.758 | 351 | 200 | 8 | 52 | 374 | 175 | 524 | 3.81e-73 | 237 |
| Msa0437520 | MtrunA17_Chr4g0005481 | 35.244 | 349 | 207 | 7 | 47 | 378 | 100 | 446 | 6.92e-73 | 234 |
| Msa0437520 | MtrunA17_Chr7g0259711 | 35.260 | 346 | 198 | 8 | 55 | 378 | 91 | 432 | 3.73e-67 | 219 |
| Msa0437520 | MtrunA17_Chr2g0287901 | 34.232 | 371 | 206 | 9 | 32 | 376 | 77 | 435 | 7.35e-67 | 218 |
| Msa0437520 | MtrunA17_Chr3g0126021 | 35.638 | 376 | 204 | 9 | 25 | 378 | 100 | 459 | 1.70e-63 | 210 |
| Msa0437520 | MtrunA17_Chr8g0384151 | 33.724 | 341 | 199 | 6 | 53 | 378 | 88 | 416 | 9.58e-62 | 204 |
| Msa0437520 | MtrunA17_Chr1g0209921 | 40.260 | 231 | 128 | 7 | 53 | 278 | 42 | 267 | 2.76e-57 | 187 |
| Msa0437520 | MtrunA17_Chr1g0178081 | 30.326 | 399 | 199 | 12 | 1 | 378 | 1 | 341 | 6.27e-52 | 176 |
| Msa0437520 | MtrunA17_Chr6g0476041 | 29.459 | 370 | 215 | 12 | 40 | 374 | 152 | 510 | 2.05e-44 | 160 |
| Msa0437520 | MtrunA17_Chr1g0188191 | 30.110 | 362 | 193 | 15 | 55 | 374 | 234 | 577 | 1.86e-40 | 150 |
| Msa0437520 | MtrunA17_Chr8g0347321 | 28.831 | 385 | 226 | 16 | 30 | 378 | 67 | 439 | 1.92e-38 | 142 |
| Msa0437520 | MtrunA17_Chr7g0226991 | 28.611 | 360 | 203 | 13 | 53 | 374 | 55 | 398 | 5.92e-36 | 135 |
| Msa0437520 | MtrunA17_Chr8g0384421 | 28.451 | 355 | 208 | 15 | 53 | 376 | 131 | 470 | 6.21e-36 | 136 |
| Msa0437520 | MtrunA17_Chr5g0414061 | 27.596 | 366 | 212 | 13 | 46 | 374 | 85 | 434 | 4.57e-35 | 134 |
| Msa0437520 | MtrunA17_Chr8g0387921 | 27.020 | 396 | 246 | 14 | 11 | 374 | 31 | 415 | 7.10e-35 | 132 |
| Msa0437520 | MtrunA17_Chr3g0140371 | 28.169 | 355 | 204 | 13 | 55 | 374 | 18 | 356 | 6.05e-34 | 129 |
| Msa0437520 | MtrunA17_Chr8g0391481 | 28.412 | 359 | 205 | 15 | 53 | 374 | 25 | 368 | 9.78e-34 | 129 |
| Msa0437520 | MtrunA17_Chr4g0049421 | 27.920 | 351 | 214 | 11 | 55 | 375 | 48 | 389 | 2.51e-33 | 128 |
| Msa0437520 | MtrunA17_Chr6g0451321 | 27.901 | 362 | 207 | 15 | 53 | 378 | 114 | 457 | 5.65e-33 | 128 |
| Msa0437520 | MtrunA17_Chr6g0456691 | 25.735 | 408 | 254 | 12 | 7 | 374 | 17 | 415 | 6.06e-33 | 127 |
| Msa0437520 | MtrunA17_Chr5g0414091 | 26.776 | 366 | 209 | 13 | 50 | 374 | 80 | 427 | 2.88e-32 | 125 |
| Msa0437520 | MtrunA17_Chr2g0283851 | 28.652 | 356 | 196 | 13 | 59 | 374 | 59 | 396 | 9.48e-32 | 124 |
| Msa0437520 | MtrunA17_Chr5g0414051 | 27.451 | 357 | 207 | 13 | 55 | 374 | 75 | 416 | 5.91e-31 | 122 |
| Msa0437520 | MtrunA17_Chr4g0070341 | 27.642 | 369 | 215 | 16 | 45 | 376 | 116 | 469 | 7.22e-31 | 122 |
| Msa0437520 | MtrunA17_Chr5g0414041 | 29.944 | 354 | 203 | 13 | 55 | 374 | 87 | 429 | 1.23e-30 | 121 |
| Msa0437520 | MtrunA17_Chr6g0456681 | 27.042 | 355 | 214 | 10 | 53 | 374 | 62 | 404 | 2.01e-29 | 117 |
| Msa0437520 | MtrunA17_Chr6g0455901 | 26.764 | 411 | 237 | 16 | 8 | 374 | 22 | 412 | 1.06e-25 | 107 |
| Msa0437520 | MtrunA17_Chr7g0221271 | 38.931 | 131 | 79 | 1 | 51 | 180 | 75 | 205 | 2.26e-24 | 99.4 |
| Msa0437520 | MtrunA17_Chr7g0221291 | 46.875 | 96 | 50 | 1 | 51 | 145 | 75 | 170 | 1.10e-23 | 96.7 |
| Msa0437520 | MtrunA17_Chr3g0085101 | 33.645 | 107 | 64 | 2 | 240 | 339 | 1 | 107 | 1.79e-16 | 75.1 |
| Msa0437520 | MtrunA17_Chr2g0287931 | 35.593 | 118 | 64 | 3 | 115 | 220 | 3 | 120 | 1.13e-15 | 73.2 |
| Msa0437520 | MtrunA17_Chr1g0209931 | 48.101 | 79 | 28 | 3 | 301 | 378 | 26 | 92 | 9.70e-14 | 66.6 |
| Msa0437520 | MtrunA17_Chr5g0429211 | 36.000 | 75 | 48 | 0 | 108 | 182 | 194 | 268 | 1.31e-11 | 64.7 |
| Msa0437520 | MtrunA17_Chr5g0429191 | 52.174 | 46 | 20 | 1 | 326 | 371 | 2 | 45 | 3.02e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437520 | AT3G54260.1 | 61.478 | 379 | 132 | 6 | 2 | 376 | 4 | 372 | 1.35e-172 | 486 |
| Msa0437520 | AT5G58600.1 | 40.237 | 338 | 185 | 6 | 55 | 378 | 66 | 400 | 1.15e-92 | 283 |
| Msa0437520 | AT2G31110.2 | 38.462 | 364 | 198 | 7 | 21 | 374 | 11 | 358 | 7.12e-92 | 280 |
| Msa0437520 | AT1G29050.1 | 41.088 | 331 | 175 | 5 | 55 | 378 | 61 | 378 | 1.65e-91 | 280 |
| Msa0437520 | AT2G30900.1 | 40.841 | 333 | 174 | 8 | 53 | 374 | 41 | 361 | 1.50e-89 | 274 |
| Msa0437520 | AT2G34070.1 | 39.823 | 339 | 181 | 7 | 49 | 378 | 59 | 383 | 1.52e-89 | 275 |
| Msa0437520 | AT5G01360.2 | 38.329 | 347 | 191 | 8 | 53 | 378 | 34 | 378 | 5.21e-86 | 266 |
| Msa0437520 | AT3G62390.1 | 38.576 | 337 | 187 | 6 | 53 | 374 | 136 | 467 | 2.15e-85 | 267 |
| Msa0437520 | AT5G01360.1 | 38.329 | 347 | 191 | 8 | 53 | 378 | 90 | 434 | 2.33e-85 | 266 |
| Msa0437520 | AT2G30010.1 | 40.058 | 347 | 179 | 8 | 55 | 378 | 56 | 396 | 3.41e-85 | 264 |
| Msa0437520 | AT5G06700.1 | 37.978 | 366 | 202 | 7 | 37 | 378 | 230 | 594 | 4.78e-85 | 270 |
| Msa0437520 | AT2G30010.2 | 40.058 | 347 | 179 | 8 | 55 | 378 | 99 | 439 | 6.11e-85 | 265 |
| Msa0437520 | AT2G42570.1 | 38.507 | 335 | 180 | 7 | 54 | 378 | 46 | 364 | 1.59e-83 | 259 |
| Msa0437520 | AT1G78710.1 | 38.298 | 329 | 182 | 7 | 54 | 374 | 37 | 352 | 1.88e-83 | 258 |
| Msa0437520 | AT1G73140.1 | 38.728 | 346 | 187 | 8 | 53 | 378 | 65 | 405 | 3.90e-83 | 259 |
| Msa0437520 | AT3G12060.1 | 39.080 | 348 | 190 | 8 | 50 | 378 | 191 | 535 | 8.58e-83 | 263 |
| Msa0437520 | AT3G55990.1 | 37.669 | 369 | 200 | 9 | 28 | 374 | 119 | 479 | 5.91e-82 | 259 |
| Msa0437520 | AT2G40150.1 | 38.636 | 352 | 180 | 9 | 54 | 374 | 70 | 416 | 2.65e-81 | 255 |
| Msa0437520 | AT5G20590.1 | 38.663 | 344 | 190 | 8 | 53 | 378 | 139 | 479 | 5.62e-81 | 256 |
| Msa0437520 | AT5G49340.1 | 37.571 | 354 | 199 | 8 | 45 | 378 | 90 | 441 | 4.10e-80 | 253 |
| Msa0437520 | AT1G60790.1 | 36.416 | 346 | 199 | 9 | 49 | 374 | 184 | 528 | 3.09e-79 | 253 |
| Msa0437520 | AT3G14850.2 | 37.273 | 330 | 184 | 7 | 55 | 374 | 34 | 350 | 5.04e-79 | 247 |
| Msa0437520 | AT5G01620.2 | 37.101 | 345 | 195 | 8 | 53 | 378 | 108 | 449 | 1.10e-78 | 249 |
| Msa0437520 | AT5G01620.1 | 37.101 | 345 | 195 | 8 | 53 | 378 | 108 | 449 | 1.10e-78 | 249 |
| Msa0437520 | AT5G01620.3 | 37.101 | 345 | 195 | 8 | 53 | 378 | 116 | 457 | 1.13e-78 | 249 |
| Msa0437520 | AT2G40160.2 | 37.176 | 347 | 195 | 9 | 55 | 378 | 77 | 423 | 3.77e-78 | 247 |
| Msa0437520 | AT2G40160.1 | 36.888 | 347 | 196 | 9 | 55 | 378 | 77 | 423 | 4.74e-78 | 247 |
| Msa0437520 | AT3G11030.1 | 37.609 | 343 | 195 | 7 | 55 | 378 | 106 | 448 | 1.49e-76 | 244 |
| Msa0437520 | AT2G38320.1 | 32.161 | 398 | 243 | 10 | 3 | 378 | 12 | 404 | 1.48e-74 | 237 |
| Msa0437520 | AT2G40320.1 | 34.343 | 396 | 235 | 9 | 8 | 378 | 27 | 422 | 9.55e-74 | 236 |
| Msa0437520 | AT1G48880.1 | 35.345 | 348 | 180 | 8 | 54 | 378 | 114 | 439 | 1.33e-67 | 220 |
| Msa0437520 | AT5G19160.1 | 34.133 | 375 | 209 | 9 | 33 | 376 | 75 | 442 | 1.81e-66 | 218 |
| Msa0437520 | AT2G31110.3 | 38.583 | 254 | 153 | 3 | 20 | 272 | 10 | 261 | 1.86e-66 | 212 |
| Msa0437520 | AT5G58600.2 | 41.410 | 227 | 130 | 3 | 55 | 279 | 66 | 291 | 3.65e-65 | 209 |
| Msa0437520 | AT3G62390.2 | 41.176 | 238 | 129 | 3 | 53 | 279 | 136 | 373 | 4.38e-65 | 213 |
| Msa0437520 | AT3G06080.2 | 35.028 | 354 | 195 | 9 | 50 | 376 | 98 | 443 | 9.03e-65 | 213 |
| Msa0437520 | AT2G38320.2 | 33.645 | 321 | 193 | 7 | 78 | 378 | 1 | 321 | 1.15e-64 | 209 |
| Msa0437520 | AT2G30900.2 | 42.609 | 230 | 127 | 5 | 53 | 279 | 41 | 268 | 1.60e-64 | 207 |
| Msa0437520 | AT5G06230.2 | 34.561 | 353 | 197 | 8 | 53 | 378 | 19 | 364 | 1.28e-62 | 205 |
| Msa0437520 | AT2G34070.2 | 38.783 | 263 | 139 | 6 | 124 | 378 | 1 | 249 | 2.95e-62 | 200 |
| Msa0437520 | AT5G06230.1 | 34.561 | 353 | 197 | 8 | 53 | 378 | 60 | 405 | 3.26e-62 | 205 |
| Msa0437520 | AT3G11570.1 | 32.071 | 396 | 230 | 11 | 8 | 378 | 38 | 419 | 5.25e-61 | 202 |
| Msa0437520 | AT2G40160.3 | 39.407 | 236 | 132 | 6 | 55 | 279 | 77 | 312 | 1.28e-56 | 188 |
| Msa0437520 | AT1G78710.2 | 31.549 | 355 | 176 | 10 | 30 | 378 | 3 | 296 | 9.44e-56 | 185 |
| Msa0437520 | AT5G20590.2 | 38.750 | 240 | 134 | 5 | 53 | 279 | 139 | 378 | 7.04e-54 | 182 |
| Msa0437520 | AT5G19160.2 | 37.037 | 243 | 140 | 4 | 50 | 279 | 94 | 336 | 1.88e-50 | 173 |
| Msa0437520 | AT3G14850.1 | 35.000 | 260 | 147 | 6 | 124 | 374 | 1 | 247 | 8.84e-50 | 168 |
| Msa0437520 | AT3G06080.1 | 35.802 | 243 | 143 | 4 | 50 | 279 | 98 | 340 | 1.24e-48 | 168 |
| Msa0437520 | AT2G31110.1 | 39.908 | 218 | 106 | 6 | 166 | 374 | 9 | 210 | 2.41e-48 | 163 |
| Msa0437520 | AT5G06230.3 | 34.959 | 246 | 141 | 4 | 53 | 279 | 60 | 305 | 1.42e-45 | 159 |
| Msa0437520 | AT1G70230.1 | 30.447 | 358 | 190 | 14 | 55 | 378 | 79 | 411 | 1.39e-40 | 148 |
| Msa0437520 | AT4G25360.1 | 29.096 | 354 | 211 | 12 | 54 | 374 | 174 | 520 | 2.95e-39 | 147 |
| Msa0437520 | AT4G25360.2 | 29.096 | 354 | 211 | 12 | 54 | 374 | 174 | 520 | 2.95e-39 | 147 |
| Msa0437520 | AT5G51640.1 | 28.912 | 377 | 223 | 13 | 31 | 374 | 120 | 484 | 1.58e-38 | 144 |
| Msa0437520 | AT1G01430.1 | 26.216 | 370 | 237 | 12 | 35 | 374 | 80 | 443 | 3.30e-38 | 142 |
| Msa0437520 | AT5G64020.1 | 27.606 | 355 | 219 | 15 | 55 | 376 | 57 | 406 | 4.40e-37 | 139 |
| Msa0437520 | AT4G01080.1 | 28.693 | 352 | 211 | 12 | 51 | 374 | 87 | 426 | 5.91e-37 | 139 |
| Msa0437520 | AT3G28150.1 | 28.713 | 404 | 215 | 18 | 12 | 376 | 39 | 408 | 1.91e-34 | 132 |
| Msa0437520 | AT5G20680.6 | 28.205 | 390 | 221 | 16 | 26 | 378 | 90 | 457 | 2.08e-34 | 132 |
| Msa0437520 | AT5G20680.4 | 28.205 | 390 | 221 | 16 | 26 | 378 | 184 | 551 | 4.62e-34 | 132 |
| Msa0437520 | AT5G20680.1 | 28.205 | 390 | 221 | 16 | 26 | 378 | 184 | 551 | 4.62e-34 | 132 |
| Msa0437520 | AT5G20680.3 | 28.205 | 390 | 221 | 16 | 26 | 378 | 184 | 551 | 4.62e-34 | 132 |
| Msa0437520 | AT5G20680.5 | 28.205 | 390 | 221 | 16 | 26 | 378 | 184 | 551 | 4.62e-34 | 132 |
| Msa0437520 | AT5G20680.2 | 28.205 | 390 | 221 | 16 | 26 | 378 | 166 | 533 | 5.17e-34 | 132 |
| Msa0437520 | AT2G37720.1 | 28.125 | 352 | 217 | 15 | 53 | 378 | 141 | 482 | 9.50e-34 | 131 |
| Msa0437520 | AT5G15890.1 | 27.841 | 352 | 214 | 10 | 49 | 374 | 181 | 518 | 2.21e-33 | 130 |
| Msa0437520 | AT5G15900.1 | 31.378 | 392 | 202 | 16 | 26 | 378 | 46 | 409 | 2.54e-33 | 129 |
| Msa0437520 | AT5G15900.2 | 30.280 | 393 | 205 | 17 | 26 | 378 | 65 | 428 | 3.56e-33 | 129 |
| Msa0437520 | AT4G11090.1 | 28.261 | 414 | 244 | 18 | 1 | 374 | 21 | 421 | 2.48e-32 | 126 |
| Msa0437520 | AT5G64470.3 | 26.377 | 345 | 222 | 10 | 55 | 375 | 55 | 391 | 2.19e-31 | 123 |
| Msa0437520 | AT5G64470.2 | 26.211 | 351 | 221 | 11 | 55 | 375 | 55 | 397 | 5.61e-31 | 122 |
| Msa0437520 | AT2G14530.1 | 26.741 | 359 | 214 | 10 | 55 | 378 | 62 | 406 | 6.80e-31 | 122 |
| Msa0437520 | AT4G23790.1 | 27.424 | 361 | 209 | 14 | 53 | 374 | 77 | 423 | 1.85e-30 | 121 |
| Msa0437520 | AT3G02440.1 | 28.286 | 350 | 209 | 11 | 55 | 374 | 127 | 464 | 2.67e-29 | 118 |
| Msa0437520 | AT3G02440.2 | 28.286 | 350 | 209 | 11 | 55 | 374 | 135 | 472 | 2.77e-29 | 118 |
| Msa0437520 | AT5G64470.4 | 26.423 | 246 | 162 | 7 | 55 | 283 | 55 | 298 | 3.30e-21 | 93.6 |
| Msa0437520 | AT5G64470.1 | 26.423 | 246 | 162 | 7 | 55 | 283 | 55 | 298 | 3.84e-21 | 93.6 |
Find 96 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGGTGTGCCTGATATT+TGG | 0.189016 | 3_3:-1290422 | Msa0437520:CDS |
| GTGATTTCTCAGTTGGAAAA+TGG | 0.208372 | 3_3:-1291838 | Msa0437520:CDS |
| AGACATCAATTGAGTTCTTC+TGG | 0.226253 | 3_3:-1291202 | Msa0437520:CDS |
| ATTTCTTCCATGAATCTCTT+TGG | 0.226552 | 3_3:+1291861 | None:intergenic |
| GCTCATTGGTGGACTCATTC+TGG | 0.278727 | 3_3:-1291062 | Msa0437520:CDS |
| TGATTAAATTGTAGGCAAAA+TGG | 0.281278 | 3_3:-1290687 | Msa0437520:intron |
| AAAGTGGGTGGATTTGAATT+TGG | 0.291594 | 3_3:-1290839 | Msa0437520:CDS |
| TTTCTTCCATGAATCTCTTT+GGG | 0.298282 | 3_3:+1291862 | None:intergenic |
| AGCATTTCGTTCCAAATATC+AGG | 0.327867 | 3_3:+1290411 | None:intergenic |
| TTCAGCCACATGCATGTTCC+AGG | 0.356693 | 3_3:-1290627 | Msa0437520:CDS |
| GTAATATCCTGTAGATATAC+TGG | 0.367331 | 3_3:+1290561 | None:intergenic |
| GGACCAGTAGTAGTGCTAAA+AGG | 0.371991 | 3_3:-1290606 | Msa0437520:CDS |
| TAATAAGAGAATTCTACATT+TGG | 0.381121 | 3_3:-1291144 | Msa0437520:CDS |
| TTGAAGAGAATGCAAGGTAT+TGG | 0.381566 | 3_3:-1291115 | Msa0437520:CDS |
| ATAGCATGGAAAGACATTAA+AGG | 0.392314 | 3_3:+1291310 | None:intergenic |
| TTCTTCCAATGCAAGCCAAC+TGG | 0.394214 | 3_3:+1291910 | None:intergenic |
| TGCAGCCATTGGTGCCTCCC+TGG | 0.399442 | 3_3:-1290438 | Msa0437520:CDS |
| TTTAATGTCTTTCCATGCTA+TGG | 0.404785 | 3_3:-1291308 | Msa0437520:intron |
| TTGCATTTGATTCAGCTCAT+TGG | 0.406976 | 3_3:-1291076 | Msa0437520:CDS |
| TATTCCAACTGACAGGAAAA+AGG | 0.407152 | 3_3:-1291347 | Msa0437520:CDS |
| TTCTTCAGTTCTACCAATAG+TGG | 0.407885 | 3_3:+1291176 | None:intergenic |
| TGTATTGAGTCCTTTCTCAT+AGG | 0.414458 | 3_3:+1290867 | None:intergenic |
| GTTCTTCTGGGCACCACTAT+TGG | 0.416633 | 3_3:-1291189 | Msa0437520:CDS |
| CATTTGATTCAGCTCATTGG+TGG | 0.419213 | 3_3:-1291073 | Msa0437520:CDS |
| GACATCAATTGAGTTCTTCT+GGG | 0.424420 | 3_3:-1291201 | Msa0437520:CDS |
| AGCCAACTGGACACTTCCTC+TGG | 0.424797 | 3_3:+1291923 | None:intergenic |
| AAGAAATGTGATTTCTCAGT+TGG | 0.430768 | 3_3:-1291845 | Msa0437520:CDS |
| TTTGATGCACTGAAGTATCT+TGG | 0.440296 | 3_3:-1291457 | Msa0437520:CDS |
| AAATGGAAGTGGAAGCCATT+AGG | 0.444002 | 3_3:-1291716 | Msa0437520:CDS |
| AGACATTAAAGGACCATCAT+AGG | 0.444756 | 3_3:+1291321 | None:intergenic |
| CATTTCTCATAATCTGAATC+CGG | 0.445205 | 3_3:+1291734 | None:intergenic |
| CTTGGGATGGAACAACCTAA+TGG | 0.446475 | 3_3:+1291701 | None:intergenic |
| AGTCCTCTGATTGCAGCCAT+TGG | 0.458504 | 3_3:-1290449 | Msa0437520:CDS |
| CGGATTCAGATTATGAGAAA+TGG | 0.459664 | 3_3:-1291733 | Msa0437520:CDS |
| TTCTATAATGAGAAACCAAT+GGG | 0.459846 | 3_3:-1291398 | Msa0437520:CDS |
| GTATGGCACCTAGACATAAC+AGG | 0.470822 | 3_3:-1290786 | Msa0437520:intron |
| AGTGTCCAGTTGGCTTGCAT+TGG | 0.472840 | 3_3:-1291915 | Msa0437520:CDS |
| TTCCAAATATCAGGCACACC+AGG | 0.474779 | 3_3:+1290420 | None:intergenic |
| TGCAAACCCAAAGAGATTCA+TGG | 0.480389 | 3_3:-1291868 | Msa0437520:CDS |
| TCTCTTGTATGCTTAGTTCA+AGG | 0.493508 | 3_3:-1291373 | Msa0437520:CDS |
| CATCACAAACATGAATCAAA+TGG | 0.494804 | 3_3:-1290893 | Msa0437520:CDS |
| CAAATGGTTGCCTATGAGAA+AGG | 0.503172 | 3_3:-1290877 | Msa0437520:CDS |
| GAGATTTCCAGTATATCTAC+AGG | 0.504762 | 3_3:-1290568 | Msa0437520:CDS |
| GCAGTAACTTGTCAAAAGAA+TGG | 0.505516 | 3_3:-1291761 | Msa0437520:CDS |
| GTTGGAAATGTTACAATCAA+AGG | 0.507595 | 3_3:-1290665 | Msa0437520:CDS |
| TAAATTGTAGGCAAAATGGT+TGG | 0.508760 | 3_3:-1290683 | Msa0437520:intron |
| ATGAGAAAGGACTCAATACA+TGG | 0.509591 | 3_3:-1290864 | Msa0437520:CDS |
| TTTAGCACTACTACTGGTCC+TGG | 0.509768 | 3_3:+1290609 | None:intergenic |
| TATTGGTAGAACTGAAGAAA+GGG | 0.514662 | 3_3:-1291172 | Msa0437520:CDS |
| AAGGAGTTATTCCAACTGAC+AGG | 0.516555 | 3_3:-1291354 | Msa0437520:CDS |
| TACCAGGTGGGATTATTACA+TGG | 0.524110 | 3_3:-1290929 | Msa0437520:intron |
| GCACACCAGGGAGGCACCAA+TGG | 0.532334 | 3_3:+1290433 | None:intergenic |
| GTTACTGCAGTGGCGAGATA+AGG | 0.535012 | 3_3:+1291776 | None:intergenic |
| CAGATTATGAGAAATGGAAG+TGG | 0.537613 | 3_3:-1291727 | Msa0437520:CDS |
| CTATTGGTAGAACTGAAGAA+AGG | 0.537856 | 3_3:-1291173 | Msa0437520:CDS |
| ACATCCTTCAGTGTATAGTA+AGG | 0.542161 | 3_3:-1290511 | Msa0437520:CDS |
| AGCATACAAGAGATTCCCAT+TGG | 0.544133 | 3_3:+1291383 | None:intergenic |
| GACTCAATACATGGGCAAAG+TGG | 0.544827 | 3_3:-1290855 | Msa0437520:CDS |
| ATGACTGCATTTAGAAGAGA+TGG | 0.549263 | 3_3:-1290534 | Msa0437520:CDS |
| GAGAGGCAGAAACAAGGTAA+TGG | 0.549704 | 3_3:-1290474 | Msa0437520:CDS |
| ATTCTATAATGAGAAACCAA+TGG | 0.552968 | 3_3:-1291399 | Msa0437520:CDS |
| ATTAATATCCTACCATAGCA+TGG | 0.553143 | 3_3:+1291296 | None:intergenic |
| CATTAGGTTGTTCCATCCCA+AGG | 0.558505 | 3_3:-1291700 | Msa0437520:intron |
| AGGTAATAAGTGAAGAAGAG+AGG | 0.559968 | 3_3:-1290491 | Msa0437520:CDS |
| GACAGTTGGAATCATAGAGA+GGG | 0.562013 | 3_3:+1291798 | None:intergenic |
| AGTACGTACCTGTTATGTCT+AGG | 0.567486 | 3_3:+1290778 | None:intergenic |
| GCACCAATGGCTGCAATCAG+AGG | 0.571338 | 3_3:+1290446 | None:intergenic |
| GTTTCATCATCACCTTGGGA+TGG | 0.572029 | 3_3:+1291688 | None:intergenic |
| TTGTCAAAAGAATGGACGGC+CGG | 0.574038 | 3_3:-1291753 | Msa0437520:CDS |
| GGAAAGAGAATGATGTTGGT+GGG | 0.575995 | 3_3:-1291424 | Msa0437520:CDS |
| ACTCAATACATGGGCAAAGT+GGG | 0.582566 | 3_3:-1290854 | Msa0437520:CDS |
| GAGAGGAAAGAGAATGATGT+TGG | 0.587409 | 3_3:-1291428 | Msa0437520:CDS |
| AATGGCTGCAATCAGAGGAC+TGG | 0.587580 | 3_3:+1290451 | None:intergenic |
| GAGAATGCAAGGTATTGGAA+AGG | 0.589108 | 3_3:-1291110 | Msa0437520:CDS |
| ATCCAGAGGAAGTGTCCAGT+TGG | 0.594248 | 3_3:-1291925 | Msa0437520:CDS |
| ATTTGATTGAAGAGAATGCA+AGG | 0.595081 | 3_3:-1291121 | Msa0437520:CDS |
| AAGTATCTTGGTAAAATGAG+AGG | 0.596417 | 3_3:-1291445 | Msa0437520:CDS |
| AGGTGGGATTATTACATGGA+AGG | 0.598017 | 3_3:-1290925 | Msa0437520:CDS |
| CAATACATGGGCAAAGTGGG+TGG | 0.598037 | 3_3:-1290851 | Msa0437520:CDS |
| ATTACCTTACTATACACTGA+AGG | 0.598619 | 3_3:+1290507 | None:intergenic |
| GTGTATGTGGATAAGAAGGA+AGG | 0.606097 | 3_3:+1290225 | None:intergenic |
| GTTGGAATCATAGAGAGGGT+AGG | 0.612157 | 3_3:+1291802 | None:intergenic |
| TAACTTGTCAAAAGAATGGA+CGG | 0.614689 | 3_3:-1291757 | Msa0437520:CDS |
| GGAACGAAATGCTGAGTGCA+TGG | 0.615044 | 3_3:-1290401 | Msa0437520:CDS |
| GGATTGTAAGATCAGTAAGT+CGG | 0.632612 | 3_3:+1290246 | None:intergenic |
| GAAGAAGAGAGGCAGAAACA+AGG | 0.633633 | 3_3:-1290480 | Msa0437520:CDS |
| GGACAGTTGGAATCATAGAG+AGG | 0.634353 | 3_3:+1291797 | None:intergenic |
| TCCAAATATCAGGCACACCA+GGG | 0.635948 | 3_3:+1290421 | None:intergenic |
| AGTGGCGAGATAAGGACAGT+TGG | 0.638580 | 3_3:+1291784 | None:intergenic |
| AGGAAAGAGAATGATGTTGG+TGG | 0.644337 | 3_3:-1291425 | Msa0437520:CDS |
| AGTAGTAGTGCTAAAAGGAG+TGG | 0.649261 | 3_3:-1290601 | Msa0437520:CDS |
| TGAGAAAGGACTCAATACAT+GGG | 0.677756 | 3_3:-1290863 | Msa0437520:CDS |
| CTGGTCCTGGAACATGCATG+TGG | 0.678164 | 3_3:+1290622 | None:intergenic |
| ATTATCACTGATCAATCCAG+AGG | 0.696073 | 3_3:-1291939 | Msa0437520:CDS |
| AAATATCAGGCACACCAGGG+AGG | 0.749580 | 3_3:+1290424 | None:intergenic |
| AGAAACTGAAGATGTCAACA+TGG | 0.749769 | 3_3:-1291891 | Msa0437520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAATACATTTACATAAA+AGG | + | chr3_3:1290673-1290692 | None:intergenic | 15.0% |
| !! | CAAAAATAAAATATTGATGA+AGG | + | chr3_3:1291500-1291519 | None:intergenic | 15.0% |
| !! | TTTAACTATAACTAAAAAGA+TGG | - | chr3_3:1291861-1291880 | Msa0437520:CDS | 15.0% |
| !! | TTTGAATACATTTACATAAA+AGG | + | chr3_3:1290673-1290692 | None:intergenic | 15.0% |
| !! | CAAAAATAAAATATTGATGA+AGG | + | chr3_3:1291500-1291519 | None:intergenic | 15.0% |
| !! | TTTAACTATAACTAAAAAGA+TGG | - | chr3_3:1291861-1291880 | Msa0437520:CDS | 15.0% |
| !! | ATAAAAATGACAGTAAATGA+AGG | + | chr3_3:1290254-1290273 | None:intergenic | 20.0% |
| !!! | CATTTTTAGAAGGAAAATTA+AGG | + | chr3_3:1290979-1290998 | None:intergenic | 20.0% |
| !!! | GTAAGTAAATCATTTTTAGA+AGG | + | chr3_3:1290989-1291008 | None:intergenic | 20.0% |
| !! | TAATAAGAGAATTCTACATT+TGG | - | chr3_3:1291094-1291113 | Msa0437520:CDS | 20.0% |
| !!! | TAATCATTTTTACATCCTAA+TGG | - | chr3_3:1291270-1291289 | Msa0437520:intron | 20.0% |
| !! | AGAACATTTGATTAAATTGT+AGG | - | chr3_3:1291543-1291562 | Msa0437520:intron | 20.0% |
| !! | ATAAAAATGACAGTAAATGA+AGG | + | chr3_3:1290254-1290273 | None:intergenic | 20.0% |
| !!! | CATTTTTAGAAGGAAAATTA+AGG | + | chr3_3:1290979-1290998 | None:intergenic | 20.0% |
| !!! | GTAAGTAAATCATTTTTAGA+AGG | + | chr3_3:1290989-1291008 | None:intergenic | 20.0% |
| !! | TAATAAGAGAATTCTACATT+TGG | - | chr3_3:1291094-1291113 | Msa0437520:CDS | 20.0% |
| !!! | TAATCATTTTTACATCCTAA+TGG | - | chr3_3:1291270-1291289 | Msa0437520:intron | 20.0% |
| !! | AGAACATTTGATTAAATTGT+AGG | - | chr3_3:1291543-1291562 | Msa0437520:intron | 20.0% |
| !!! | CTGTCATTTTTATTCTTCTT+AGG | - | chr3_3:1290261-1290280 | Msa0437520:three_prime_UTR | 25.0% |
| ! | AAGCATGTAAGAAAACAAAA+AGG | + | chr3_3:1290596-1290615 | None:intergenic | 25.0% |
| ! | ATTCTATAATGAGAAACCAA+TGG | - | chr3_3:1290839-1290858 | Msa0437520:CDS | 25.0% |
| ! | TTCTATAATGAGAAACCAAT+GGG | - | chr3_3:1290840-1290859 | Msa0437520:CDS | 25.0% |
| !! | TAATCAAGATTGATTCCATT+AGG | + | chr3_3:1291288-1291307 | None:intergenic | 25.0% |
| ! | AATCAATCTTGATTAATACC+AGG | - | chr3_3:1291293-1291312 | Msa0437520:intron | 25.0% |
| ! | TGATTAAATTGTAGGCAAAA+TGG | - | chr3_3:1291551-1291570 | Msa0437520:intron | 25.0% |
| ! | CTATAACTAAAAAGATGGAA+TGG | - | chr3_3:1291866-1291885 | Msa0437520:CDS | 25.0% |
| !!! | CTGTCATTTTTATTCTTCTT+AGG | - | chr3_3:1290261-1290280 | Msa0437520:three_prime_UTR | 25.0% |
| ! | AAGCATGTAAGAAAACAAAA+AGG | + | chr3_3:1290596-1290615 | None:intergenic | 25.0% |
| ! | ATTCTATAATGAGAAACCAA+TGG | - | chr3_3:1290839-1290858 | Msa0437520:CDS | 25.0% |
| ! | TTCTATAATGAGAAACCAAT+GGG | - | chr3_3:1290840-1290859 | Msa0437520:CDS | 25.0% |
| !! | TAATCAAGATTGATTCCATT+AGG | + | chr3_3:1291288-1291307 | None:intergenic | 25.0% |
| ! | AATCAATCTTGATTAATACC+AGG | - | chr3_3:1291293-1291312 | Msa0437520:intron | 25.0% |
| ! | TGATTAAATTGTAGGCAAAA+TGG | - | chr3_3:1291551-1291570 | Msa0437520:intron | 25.0% |
| ! | CTATAACTAAAAAGATGGAA+TGG | - | chr3_3:1291866-1291885 | Msa0437520:CDS | 25.0% |
| TTTCTTCCATGAATCTCTTT+GGG | + | chr3_3:1290379-1290398 | None:intergenic | 30.0% | |
| ATTTCTTCCATGAATCTCTT+TGG | + | chr3_3:1290380-1290399 | None:intergenic | 30.0% | |
| AAGAAATGTGATTTCTCAGT+TGG | - | chr3_3:1290393-1290412 | Msa0437520:exon | 30.0% | |
| ! | TAACTTGTCAAAAGAATGGA+CGG | - | chr3_3:1290481-1290500 | Msa0437520:CDS | 30.0% |
| CATTTCTCATAATCTGAATC+CGG | + | chr3_3:1290507-1290526 | None:intergenic | 30.0% | |
| TAATGTTTCATCATCACCTT+GGG | + | chr3_3:1290557-1290576 | None:intergenic | 30.0% | |
| TTAATGTTTCATCATCACCT+TGG | + | chr3_3:1290558-1290577 | None:intergenic | 30.0% | |
| ! | TGCAACATTTTTGACATGTA+TGG | - | chr3_3:1290620-1290639 | Msa0437520:CDS | 30.0% |
| AGAAGCTAAATTTATCAGCA+TGG | + | chr3_3:1290745-1290764 | None:intergenic | 30.0% | |
| AAGTATCTTGGTAAAATGAG+AGG | - | chr3_3:1290793-1290812 | Msa0437520:CDS | 30.0% | |
| ATAGCATGGAAAGACATTAA+AGG | + | chr3_3:1290931-1290950 | None:intergenic | 30.0% | |
| TTTAATGTCTTTCCATGCTA+TGG | - | chr3_3:1290930-1290949 | Msa0437520:intron | 30.0% | |
| ATTAATATCCTACCATAGCA+TGG | + | chr3_3:1290945-1290964 | None:intergenic | 30.0% | |
| ACATGTTGTTCACTTATTAC+AGG | - | chr3_3:1291007-1291026 | Msa0437520:intron | 30.0% | |
| TATTGGTAGAACTGAAGAAA+GGG | - | chr3_3:1291066-1291085 | Msa0437520:CDS | 30.0% | |
| ATTTGATTGAAGAGAATGCA+AGG | - | chr3_3:1291117-1291136 | Msa0437520:CDS | 30.0% | |
| AATCTTGATTAATACCAGGT+GGG | - | chr3_3:1291297-1291316 | Msa0437520:intron | 30.0% | |
| CATCACAAACATGAATCAAA+TGG | - | chr3_3:1291345-1291364 | Msa0437520:CDS | 30.0% | |
| TAAATTGTAGGCAAAATGGT+TGG | - | chr3_3:1291555-1291574 | Msa0437520:intron | 30.0% | |
| GTTGGAAATGTTACAATCAA+AGG | - | chr3_3:1291573-1291592 | Msa0437520:intron | 30.0% | |
| ! | ATGTGGCTGAAATATTTTAC+AGG | + | chr3_3:1291602-1291621 | None:intergenic | 30.0% |
| GTAATATCCTGTAGATATAC+TGG | + | chr3_3:1291680-1291699 | None:intergenic | 30.0% | |
| ATTACCTTACTATACACTGA+AGG | + | chr3_3:1291734-1291753 | None:intergenic | 30.0% | |
| !!! | GAATGGATCTGAGTTTTTTA+TGG | - | chr3_3:1291883-1291902 | Msa0437520:CDS | 30.0% |
| TTTCTTCCATGAATCTCTTT+GGG | + | chr3_3:1290379-1290398 | None:intergenic | 30.0% | |
| ATTTCTTCCATGAATCTCTT+TGG | + | chr3_3:1290380-1290399 | None:intergenic | 30.0% | |
| AAGAAATGTGATTTCTCAGT+TGG | - | chr3_3:1290393-1290412 | Msa0437520:exon | 30.0% | |
| ! | TAACTTGTCAAAAGAATGGA+CGG | - | chr3_3:1290481-1290500 | Msa0437520:CDS | 30.0% |
| CATTTCTCATAATCTGAATC+CGG | + | chr3_3:1290507-1290526 | None:intergenic | 30.0% | |
| TAATGTTTCATCATCACCTT+GGG | + | chr3_3:1290557-1290576 | None:intergenic | 30.0% | |
| TTAATGTTTCATCATCACCT+TGG | + | chr3_3:1290558-1290577 | None:intergenic | 30.0% | |
| ! | TGCAACATTTTTGACATGTA+TGG | - | chr3_3:1290620-1290639 | Msa0437520:CDS | 30.0% |
| AGAAGCTAAATTTATCAGCA+TGG | + | chr3_3:1290745-1290764 | None:intergenic | 30.0% | |
| AAGTATCTTGGTAAAATGAG+AGG | - | chr3_3:1290793-1290812 | Msa0437520:CDS | 30.0% | |
| ATAGCATGGAAAGACATTAA+AGG | + | chr3_3:1290931-1290950 | None:intergenic | 30.0% | |
| TTTAATGTCTTTCCATGCTA+TGG | - | chr3_3:1290930-1290949 | Msa0437520:intron | 30.0% | |
| ATTAATATCCTACCATAGCA+TGG | + | chr3_3:1290945-1290964 | None:intergenic | 30.0% | |
| ACATGTTGTTCACTTATTAC+AGG | - | chr3_3:1291007-1291026 | Msa0437520:intron | 30.0% | |
| TATTGGTAGAACTGAAGAAA+GGG | - | chr3_3:1291066-1291085 | Msa0437520:CDS | 30.0% | |
| ATTTGATTGAAGAGAATGCA+AGG | - | chr3_3:1291117-1291136 | Msa0437520:CDS | 30.0% | |
| AATCTTGATTAATACCAGGT+GGG | - | chr3_3:1291297-1291316 | Msa0437520:intron | 30.0% | |
| CATCACAAACATGAATCAAA+TGG | - | chr3_3:1291345-1291364 | Msa0437520:CDS | 30.0% | |
| TAAATTGTAGGCAAAATGGT+TGG | - | chr3_3:1291555-1291574 | Msa0437520:intron | 30.0% | |
| GTTGGAAATGTTACAATCAA+AGG | - | chr3_3:1291573-1291592 | Msa0437520:intron | 30.0% | |
| ! | ATGTGGCTGAAATATTTTAC+AGG | + | chr3_3:1291602-1291621 | None:intergenic | 30.0% |
| GTAATATCCTGTAGATATAC+TGG | + | chr3_3:1291680-1291699 | None:intergenic | 30.0% | |
| ATTACCTTACTATACACTGA+AGG | + | chr3_3:1291734-1291753 | None:intergenic | 30.0% | |
| !!! | GAATGGATCTGAGTTTTTTA+TGG | - | chr3_3:1291883-1291902 | Msa0437520:CDS | 30.0% |
| ATTATCACTGATCAATCCAG+AGG | - | chr3_3:1290299-1290318 | Msa0437520:three_prime_UTR | 35.0% | |
| AGAAACTGAAGATGTCAACA+TGG | - | chr3_3:1290347-1290366 | Msa0437520:three_prime_UTR | 35.0% | |
| GTGATTTCTCAGTTGGAAAA+TGG | - | chr3_3:1290400-1290419 | Msa0437520:CDS | 35.0% | |
| ! | GCAGTAACTTGTCAAAAGAA+TGG | - | chr3_3:1290477-1290496 | Msa0437520:CDS | 35.0% |
| CGGATTCAGATTATGAGAAA+TGG | - | chr3_3:1290505-1290524 | Msa0437520:CDS | 35.0% | |
| CAGATTATGAGAAATGGAAG+TGG | - | chr3_3:1290511-1290530 | Msa0437520:CDS | 35.0% | |
| ! | TTTGATGCACTGAAGTATCT+TGG | - | chr3_3:1290781-1290800 | Msa0437520:intron | 35.0% |
| TCTCTTGTATGCTTAGTTCA+AGG | - | chr3_3:1290865-1290884 | Msa0437520:CDS | 35.0% | |
| TATTCCAACTGACAGGAAAA+AGG | - | chr3_3:1290891-1290910 | Msa0437520:CDS | 35.0% | |
| AGACATTAAAGGACCATCAT+AGG | + | chr3_3:1290920-1290939 | None:intergenic | 35.0% | |
| AGACATCAATTGAGTTCTTC+TGG | - | chr3_3:1291036-1291055 | Msa0437520:intron | 35.0% | |
| GACATCAATTGAGTTCTTCT+GGG | - | chr3_3:1291037-1291056 | Msa0437520:intron | 35.0% | |
| TTCTTCAGTTCTACCAATAG+TGG | + | chr3_3:1291065-1291084 | None:intergenic | 35.0% | |
| CTATTGGTAGAACTGAAGAA+AGG | - | chr3_3:1291065-1291084 | Msa0437520:CDS | 35.0% | |
| TTGAAGAGAATGCAAGGTAT+TGG | - | chr3_3:1291123-1291142 | Msa0437520:CDS | 35.0% | |
| TTGCATTTGATTCAGCTCAT+TGG | - | chr3_3:1291162-1291181 | Msa0437520:CDS | 35.0% | |
| CAATCTTGATTAATACCAGG+TGG | - | chr3_3:1291296-1291315 | Msa0437520:intron | 35.0% | |
| TGTATTGAGTCCTTTCTCAT+AGG | + | chr3_3:1291374-1291393 | None:intergenic | 35.0% | |
| ATGAGAAAGGACTCAATACA+TGG | - | chr3_3:1291374-1291393 | Msa0437520:CDS | 35.0% | |
| TGAGAAAGGACTCAATACAT+GGG | - | chr3_3:1291375-1291394 | Msa0437520:CDS | 35.0% | |
| ! | AAAGTGGGTGGATTTGAATT+TGG | - | chr3_3:1291399-1291418 | Msa0437520:CDS | 35.0% |
| ! | CATACTTCTAAAAACGACTC+GGG | + | chr3_3:1291437-1291456 | None:intergenic | 35.0% |
| ! | CCATACTTCTAAAAACGACT+CGG | + | chr3_3:1291438-1291457 | None:intergenic | 35.0% |
| GAGATTTCCAGTATATCTAC+AGG | - | chr3_3:1291670-1291689 | Msa0437520:intron | 35.0% | |
| ATGACTGCATTTAGAAGAGA+TGG | - | chr3_3:1291704-1291723 | Msa0437520:CDS | 35.0% | |
| ACATCCTTCAGTGTATAGTA+AGG | - | chr3_3:1291727-1291746 | Msa0437520:CDS | 35.0% | |
| AGGTAATAAGTGAAGAAGAG+AGG | - | chr3_3:1291747-1291766 | Msa0437520:CDS | 35.0% | |
| AGCATTTCGTTCCAAATATC+AGG | + | chr3_3:1291830-1291849 | None:intergenic | 35.0% | |
| GGATTGTAAGATCAGTAAGT+CGG | + | chr3_3:1291995-1292014 | None:intergenic | 35.0% | |
| ATTATCACTGATCAATCCAG+AGG | - | chr3_3:1290299-1290318 | Msa0437520:three_prime_UTR | 35.0% | |
| AGAAACTGAAGATGTCAACA+TGG | - | chr3_3:1290347-1290366 | Msa0437520:three_prime_UTR | 35.0% | |
| GTGATTTCTCAGTTGGAAAA+TGG | - | chr3_3:1290400-1290419 | Msa0437520:CDS | 35.0% | |
| ! | GCAGTAACTTGTCAAAAGAA+TGG | - | chr3_3:1290477-1290496 | Msa0437520:CDS | 35.0% |
| CGGATTCAGATTATGAGAAA+TGG | - | chr3_3:1290505-1290524 | Msa0437520:CDS | 35.0% | |
| CAGATTATGAGAAATGGAAG+TGG | - | chr3_3:1290511-1290530 | Msa0437520:CDS | 35.0% | |
| ! | TTTGATGCACTGAAGTATCT+TGG | - | chr3_3:1290781-1290800 | Msa0437520:intron | 35.0% |
| TCTCTTGTATGCTTAGTTCA+AGG | - | chr3_3:1290865-1290884 | Msa0437520:CDS | 35.0% | |
| TATTCCAACTGACAGGAAAA+AGG | - | chr3_3:1290891-1290910 | Msa0437520:CDS | 35.0% | |
| AGACATTAAAGGACCATCAT+AGG | + | chr3_3:1290920-1290939 | None:intergenic | 35.0% | |
| AGACATCAATTGAGTTCTTC+TGG | - | chr3_3:1291036-1291055 | Msa0437520:intron | 35.0% | |
| GACATCAATTGAGTTCTTCT+GGG | - | chr3_3:1291037-1291056 | Msa0437520:intron | 35.0% | |
| TTCTTCAGTTCTACCAATAG+TGG | + | chr3_3:1291065-1291084 | None:intergenic | 35.0% | |
| CTATTGGTAGAACTGAAGAA+AGG | - | chr3_3:1291065-1291084 | Msa0437520:CDS | 35.0% | |
| TTGAAGAGAATGCAAGGTAT+TGG | - | chr3_3:1291123-1291142 | Msa0437520:CDS | 35.0% | |
| TTGCATTTGATTCAGCTCAT+TGG | - | chr3_3:1291162-1291181 | Msa0437520:CDS | 35.0% | |
| CAATCTTGATTAATACCAGG+TGG | - | chr3_3:1291296-1291315 | Msa0437520:intron | 35.0% | |
| TGTATTGAGTCCTTTCTCAT+AGG | + | chr3_3:1291374-1291393 | None:intergenic | 35.0% | |
| ATGAGAAAGGACTCAATACA+TGG | - | chr3_3:1291374-1291393 | Msa0437520:CDS | 35.0% | |
| TGAGAAAGGACTCAATACAT+GGG | - | chr3_3:1291375-1291394 | Msa0437520:CDS | 35.0% | |
| ! | AAAGTGGGTGGATTTGAATT+TGG | - | chr3_3:1291399-1291418 | Msa0437520:CDS | 35.0% |
| ! | CATACTTCTAAAAACGACTC+GGG | + | chr3_3:1291437-1291456 | None:intergenic | 35.0% |
| ! | CCATACTTCTAAAAACGACT+CGG | + | chr3_3:1291438-1291457 | None:intergenic | 35.0% |
| GAGATTTCCAGTATATCTAC+AGG | - | chr3_3:1291670-1291689 | Msa0437520:intron | 35.0% | |
| ATGACTGCATTTAGAAGAGA+TGG | - | chr3_3:1291704-1291723 | Msa0437520:CDS | 35.0% | |
| ACATCCTTCAGTGTATAGTA+AGG | - | chr3_3:1291727-1291746 | Msa0437520:CDS | 35.0% | |
| AGGTAATAAGTGAAGAAGAG+AGG | - | chr3_3:1291747-1291766 | Msa0437520:CDS | 35.0% | |
| AGCATTTCGTTCCAAATATC+AGG | + | chr3_3:1291830-1291849 | None:intergenic | 35.0% | |
| GGATTGTAAGATCAGTAAGT+CGG | + | chr3_3:1291995-1292014 | None:intergenic | 35.0% | |
| TGCAAACCCAAAGAGATTCA+TGG | - | chr3_3:1290370-1290389 | Msa0437520:three_prime_UTR | 40.0% | |
| GACAGTTGGAATCATAGAGA+GGG | + | chr3_3:1290443-1290462 | None:intergenic | 40.0% | |
| ! | CTTTTGACAAGTTACTGCAG+TGG | + | chr3_3:1290475-1290494 | None:intergenic | 40.0% |
| AAATGGAAGTGGAAGCCATT+AGG | - | chr3_3:1290522-1290541 | Msa0437520:CDS | 40.0% | |
| AGCATGGTTTACGTGTGTTT+GGG | + | chr3_3:1290729-1290748 | None:intergenic | 40.0% | |
| ! | AGCTTCTCGATGACATTTTC+AGG | - | chr3_3:1290758-1290777 | Msa0437520:intron | 40.0% |
| GAGAGGAAAGAGAATGATGT+TGG | - | chr3_3:1290810-1290829 | Msa0437520:CDS | 40.0% | |
| AGGAAAGAGAATGATGTTGG+TGG | - | chr3_3:1290813-1290832 | Msa0437520:CDS | 40.0% | |
| GGAAAGAGAATGATGTTGGT+GGG | - | chr3_3:1290814-1290833 | Msa0437520:CDS | 40.0% | |
| AGCATACAAGAGATTCCCAT+TGG | + | chr3_3:1290858-1290877 | None:intergenic | 40.0% | |
| AAGGAGTTATTCCAACTGAC+AGG | - | chr3_3:1290884-1290903 | Msa0437520:CDS | 40.0% | |
| AGGAAAAAGGTCACCTATGA+TGG | - | chr3_3:1290904-1290923 | Msa0437520:CDS | 40.0% | |
| ATGTCTTTCCATGCTATGGT+AGG | - | chr3_3:1290934-1290953 | Msa0437520:intron | 40.0% | |
| !! | GAGAATGCAAGGTATTGGAA+AGG | - | chr3_3:1291128-1291147 | Msa0437520:CDS | 40.0% |
| CATTTGATTCAGCTCATTGG+TGG | - | chr3_3:1291165-1291184 | Msa0437520:CDS | 40.0% | |
| TACCAGGTGGGATTATTACA+TGG | - | chr3_3:1291309-1291328 | Msa0437520:CDS | 40.0% | |
| TTCCATGTAATAATCCCACC+TGG | + | chr3_3:1291314-1291333 | None:intergenic | 40.0% | |
| AGGTGGGATTATTACATGGA+AGG | - | chr3_3:1291313-1291332 | Msa0437520:CDS | 40.0% | |
| CAAATGGTTGCCTATGAGAA+AGG | - | chr3_3:1291361-1291380 | Msa0437520:CDS | 40.0% | |
| ACTCAATACATGGGCAAAGT+GGG | - | chr3_3:1291384-1291403 | Msa0437520:CDS | 40.0% | |
| !!! | CCGAGTCGTTTTTAGAAGTA+TGG | - | chr3_3:1291435-1291454 | Msa0437520:CDS | 40.0% |
| AGTACGTACCTGTTATGTCT+AGG | + | chr3_3:1291463-1291482 | None:intergenic | 40.0% | |
| ! | ACTCCTTTTAGCACTACTAC+TGG | + | chr3_3:1291638-1291657 | None:intergenic | 40.0% |
| AGTAGTAGTGCTAAAAGGAG+TGG | - | chr3_3:1291637-1291656 | Msa0437520:intron | 40.0% | |
| TGCAAACCCAAAGAGATTCA+TGG | - | chr3_3:1290370-1290389 | Msa0437520:three_prime_UTR | 40.0% | |
| GACAGTTGGAATCATAGAGA+GGG | + | chr3_3:1290443-1290462 | None:intergenic | 40.0% | |
| ! | CTTTTGACAAGTTACTGCAG+TGG | + | chr3_3:1290475-1290494 | None:intergenic | 40.0% |
| AAATGGAAGTGGAAGCCATT+AGG | - | chr3_3:1290522-1290541 | Msa0437520:CDS | 40.0% | |
| AGCATGGTTTACGTGTGTTT+GGG | + | chr3_3:1290729-1290748 | None:intergenic | 40.0% | |
| ! | AGCTTCTCGATGACATTTTC+AGG | - | chr3_3:1290758-1290777 | Msa0437520:intron | 40.0% |
| GAGAGGAAAGAGAATGATGT+TGG | - | chr3_3:1290810-1290829 | Msa0437520:CDS | 40.0% | |
| AGGAAAGAGAATGATGTTGG+TGG | - | chr3_3:1290813-1290832 | Msa0437520:CDS | 40.0% | |
| GGAAAGAGAATGATGTTGGT+GGG | - | chr3_3:1290814-1290833 | Msa0437520:CDS | 40.0% | |
| AGCATACAAGAGATTCCCAT+TGG | + | chr3_3:1290858-1290877 | None:intergenic | 40.0% | |
| AAGGAGTTATTCCAACTGAC+AGG | - | chr3_3:1290884-1290903 | Msa0437520:CDS | 40.0% | |
| AGGAAAAAGGTCACCTATGA+TGG | - | chr3_3:1290904-1290923 | Msa0437520:CDS | 40.0% | |
| ATGTCTTTCCATGCTATGGT+AGG | - | chr3_3:1290934-1290953 | Msa0437520:intron | 40.0% | |
| !! | GAGAATGCAAGGTATTGGAA+AGG | - | chr3_3:1291128-1291147 | Msa0437520:CDS | 40.0% |
| CATTTGATTCAGCTCATTGG+TGG | - | chr3_3:1291165-1291184 | Msa0437520:CDS | 40.0% | |
| TACCAGGTGGGATTATTACA+TGG | - | chr3_3:1291309-1291328 | Msa0437520:CDS | 40.0% | |
| TTCCATGTAATAATCCCACC+TGG | + | chr3_3:1291314-1291333 | None:intergenic | 40.0% | |
| AGGTGGGATTATTACATGGA+AGG | - | chr3_3:1291313-1291332 | Msa0437520:CDS | 40.0% | |
| CAAATGGTTGCCTATGAGAA+AGG | - | chr3_3:1291361-1291380 | Msa0437520:CDS | 40.0% | |
| ACTCAATACATGGGCAAAGT+GGG | - | chr3_3:1291384-1291403 | Msa0437520:CDS | 40.0% | |
| !!! | CCGAGTCGTTTTTAGAAGTA+TGG | - | chr3_3:1291435-1291454 | Msa0437520:CDS | 40.0% |
| AGTACGTACCTGTTATGTCT+AGG | + | chr3_3:1291463-1291482 | None:intergenic | 40.0% | |
| ! | ACTCCTTTTAGCACTACTAC+TGG | + | chr3_3:1291638-1291657 | None:intergenic | 40.0% |
| AGTAGTAGTGCTAAAAGGAG+TGG | - | chr3_3:1291637-1291656 | Msa0437520:intron | 40.0% | |
| TTCTTCCAATGCAAGCCAAC+TGG | + | chr3_3:1290331-1290350 | None:intergenic | 45.0% | |
| GTTGGAATCATAGAGAGGGT+AGG | + | chr3_3:1290439-1290458 | None:intergenic | 45.0% | |
| GGACAGTTGGAATCATAGAG+AGG | + | chr3_3:1290444-1290463 | None:intergenic | 45.0% | |
| TTGTCAAAAGAATGGACGGC+CGG | - | chr3_3:1290485-1290504 | Msa0437520:CDS | 45.0% | |
| CTTGGGATGGAACAACCTAA+TGG | + | chr3_3:1290540-1290559 | None:intergenic | 45.0% | |
| ! | CATTAGGTTGTTCCATCCCA+AGG | - | chr3_3:1290538-1290557 | Msa0437520:CDS | 45.0% |
| GTTTCATCATCACCTTGGGA+TGG | + | chr3_3:1290553-1290572 | None:intergenic | 45.0% | |
| CAGCATGGTTTACGTGTGTT+TGG | + | chr3_3:1290730-1290749 | None:intergenic | 45.0% | |
| ! | GTGACCTTTTTCCTGTCAGT+TGG | + | chr3_3:1290898-1290917 | None:intergenic | 45.0% |
| GACTCAATACATGGGCAAAG+TGG | - | chr3_3:1291383-1291402 | Msa0437520:CDS | 45.0% | |
| !! | AAAACGACTCGGGTTTTTCG+AGG | + | chr3_3:1291427-1291446 | None:intergenic | 45.0% |
| GTATGGCACCTAGACATAAC+AGG | - | chr3_3:1291452-1291471 | Msa0437520:CDS | 45.0% | |
| TTTAGCACTACTACTGGTCC+TGG | + | chr3_3:1291632-1291651 | None:intergenic | 45.0% | |
| GGACCAGTAGTAGTGCTAAA+AGG | - | chr3_3:1291632-1291651 | Msa0437520:intron | 45.0% | |
| GAAGAAGAGAGGCAGAAACA+AGG | - | chr3_3:1291758-1291777 | Msa0437520:CDS | 45.0% | |
| GAGAGGCAGAAACAAGGTAA+TGG | - | chr3_3:1291764-1291783 | Msa0437520:CDS | 45.0% | |
| TCCAAATATCAGGCACACCA+GGG | + | chr3_3:1291820-1291839 | None:intergenic | 45.0% | |
| TTCCAAATATCAGGCACACC+AGG | + | chr3_3:1291821-1291840 | None:intergenic | 45.0% | |
| TTCTTCCAATGCAAGCCAAC+TGG | + | chr3_3:1290331-1290350 | None:intergenic | 45.0% | |
| GTTGGAATCATAGAGAGGGT+AGG | + | chr3_3:1290439-1290458 | None:intergenic | 45.0% | |
| GGACAGTTGGAATCATAGAG+AGG | + | chr3_3:1290444-1290463 | None:intergenic | 45.0% | |
| TTGTCAAAAGAATGGACGGC+CGG | - | chr3_3:1290485-1290504 | Msa0437520:CDS | 45.0% | |
| CTTGGGATGGAACAACCTAA+TGG | + | chr3_3:1290540-1290559 | None:intergenic | 45.0% | |
| ! | CATTAGGTTGTTCCATCCCA+AGG | - | chr3_3:1290538-1290557 | Msa0437520:CDS | 45.0% |
| GTTTCATCATCACCTTGGGA+TGG | + | chr3_3:1290553-1290572 | None:intergenic | 45.0% | |
| CAGCATGGTTTACGTGTGTT+TGG | + | chr3_3:1290730-1290749 | None:intergenic | 45.0% | |
| ! | GTGACCTTTTTCCTGTCAGT+TGG | + | chr3_3:1290898-1290917 | None:intergenic | 45.0% |
| GACTCAATACATGGGCAAAG+TGG | - | chr3_3:1291383-1291402 | Msa0437520:CDS | 45.0% | |
| !! | AAAACGACTCGGGTTTTTCG+AGG | + | chr3_3:1291427-1291446 | None:intergenic | 45.0% |
| GTATGGCACCTAGACATAAC+AGG | - | chr3_3:1291452-1291471 | Msa0437520:CDS | 45.0% | |
| TTTAGCACTACTACTGGTCC+TGG | + | chr3_3:1291632-1291651 | None:intergenic | 45.0% | |
| GGACCAGTAGTAGTGCTAAA+AGG | - | chr3_3:1291632-1291651 | Msa0437520:intron | 45.0% | |
| GAAGAAGAGAGGCAGAAACA+AGG | - | chr3_3:1291758-1291777 | Msa0437520:CDS | 45.0% | |
| GAGAGGCAGAAACAAGGTAA+TGG | - | chr3_3:1291764-1291783 | Msa0437520:CDS | 45.0% | |
| TCCAAATATCAGGCACACCA+GGG | + | chr3_3:1291820-1291839 | None:intergenic | 45.0% | |
| TTCCAAATATCAGGCACACC+AGG | + | chr3_3:1291821-1291840 | None:intergenic | 45.0% | |
| !! | ATCCAGAGGAAGTGTCCAGT+TGG | - | chr3_3:1290313-1290332 | Msa0437520:three_prime_UTR | 50.0% |
| !! | AGTGTCCAGTTGGCTTGCAT+TGG | - | chr3_3:1290323-1290342 | Msa0437520:three_prime_UTR | 50.0% |
| AGTGGCGAGATAAGGACAGT+TGG | + | chr3_3:1290457-1290476 | None:intergenic | 50.0% | |
| GTTACTGCAGTGGCGAGATA+AGG | + | chr3_3:1290465-1290484 | None:intergenic | 50.0% | |
| GTTCTTCTGGGCACCACTAT+TGG | - | chr3_3:1291049-1291068 | Msa0437520:intron | 50.0% | |
| !! | GCTCATTGGTGGACTCATTC+TGG | - | chr3_3:1291176-1291195 | Msa0437520:CDS | 50.0% |
| CAATACATGGGCAAAGTGGG+TGG | - | chr3_3:1291387-1291406 | Msa0437520:CDS | 50.0% | |
| TTCAGCCACATGCATGTTCC+AGG | - | chr3_3:1291611-1291630 | Msa0437520:intron | 50.0% | |
| AATGGCTGCAATCAGAGGAC+TGG | + | chr3_3:1291790-1291809 | None:intergenic | 50.0% | |
| AGTCCTCTGATTGCAGCCAT+TGG | - | chr3_3:1291789-1291808 | Msa0437520:CDS | 50.0% | |
| AAATATCAGGCACACCAGGG+AGG | + | chr3_3:1291817-1291836 | None:intergenic | 50.0% | |
| TCCCTGGTGTGCCTGATATT+TGG | - | chr3_3:1291816-1291835 | Msa0437520:CDS | 50.0% | |
| GGAACGAAATGCTGAGTGCA+TGG | - | chr3_3:1291837-1291856 | Msa0437520:CDS | 50.0% | |
| !! | ATCCAGAGGAAGTGTCCAGT+TGG | - | chr3_3:1290313-1290332 | Msa0437520:three_prime_UTR | 50.0% |
| !! | AGTGTCCAGTTGGCTTGCAT+TGG | - | chr3_3:1290323-1290342 | Msa0437520:three_prime_UTR | 50.0% |
| AGTGGCGAGATAAGGACAGT+TGG | + | chr3_3:1290457-1290476 | None:intergenic | 50.0% | |
| GTTACTGCAGTGGCGAGATA+AGG | + | chr3_3:1290465-1290484 | None:intergenic | 50.0% | |
| GTTCTTCTGGGCACCACTAT+TGG | - | chr3_3:1291049-1291068 | Msa0437520:intron | 50.0% | |
| !! | GCTCATTGGTGGACTCATTC+TGG | - | chr3_3:1291176-1291195 | Msa0437520:CDS | 50.0% |
| CAATACATGGGCAAAGTGGG+TGG | - | chr3_3:1291387-1291406 | Msa0437520:CDS | 50.0% | |
| TTCAGCCACATGCATGTTCC+AGG | - | chr3_3:1291611-1291630 | Msa0437520:intron | 50.0% | |
| AATGGCTGCAATCAGAGGAC+TGG | + | chr3_3:1291790-1291809 | None:intergenic | 50.0% | |
| AGTCCTCTGATTGCAGCCAT+TGG | - | chr3_3:1291789-1291808 | Msa0437520:CDS | 50.0% | |
| AAATATCAGGCACACCAGGG+AGG | + | chr3_3:1291817-1291836 | None:intergenic | 50.0% | |
| TCCCTGGTGTGCCTGATATT+TGG | - | chr3_3:1291816-1291835 | Msa0437520:CDS | 50.0% | |
| GGAACGAAATGCTGAGTGCA+TGG | - | chr3_3:1291837-1291856 | Msa0437520:CDS | 50.0% | |
| AGCCAACTGGACACTTCCTC+TGG | + | chr3_3:1290318-1290337 | None:intergenic | 55.0% | |
| CTGGTCCTGGAACATGCATG+TGG | + | chr3_3:1291619-1291638 | None:intergenic | 55.0% | |
| GCACCAATGGCTGCAATCAG+AGG | + | chr3_3:1291795-1291814 | None:intergenic | 55.0% | |
| AGCCAACTGGACACTTCCTC+TGG | + | chr3_3:1290318-1290337 | None:intergenic | 55.0% | |
| CTGGTCCTGGAACATGCATG+TGG | + | chr3_3:1291619-1291638 | None:intergenic | 55.0% | |
| GCACCAATGGCTGCAATCAG+AGG | + | chr3_3:1291795-1291814 | None:intergenic | 55.0% | |
| ! | TGCAGCCATTGGTGCCTCCC+TGG | - | chr3_3:1291800-1291819 | Msa0437520:CDS | 65.0% |
| !! | GCACACCAGGGAGGCACCAA+TGG | + | chr3_3:1291808-1291827 | None:intergenic | 65.0% |
| ! | TGCAGCCATTGGTGCCTCCC+TGG | - | chr3_3:1291800-1291819 | Msa0437520:CDS | 65.0% |
| !! | GCACACCAGGGAGGCACCAA+TGG | + | chr3_3:1291808-1291827 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1290237 | 1292023 | 1290237 | ID=Msa0437520;Name=Msa0437520 |
| chr3_3 | mRNA | 1290237 | 1292023 | 1290237 | ID=Msa0437520-mRNA-1;Parent=Msa0437520;Name=Msa0437520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.8|1|1|1|5|158|378 |
| chr3_3 | exon | 1290237 | 1290695 | 1290237 | ID=Msa0437520-mRNA-1:exon:112;Parent=Msa0437520-mRNA-1 |
| chr3_3 | exon | 1290787 | 1290945 | 1290787 | ID=Msa0437520-mRNA-1:exon:111;Parent=Msa0437520-mRNA-1 |
| chr3_3 | exon | 1291050 | 1291231 | 1291050 | ID=Msa0437520-mRNA-1:exon:110;Parent=Msa0437520-mRNA-1 |
| chr3_3 | exon | 1291309 | 1291480 | 1291309 | ID=Msa0437520-mRNA-1:exon:109;Parent=Msa0437520-mRNA-1 |
| chr3_3 | exon | 1291701 | 1292023 | 1291701 | ID=Msa0437520-mRNA-1:exon:108;Parent=Msa0437520-mRNA-1 |
| chr3_3 | CDS | 1291701 | 1292023 | 1291701 | ID=Msa0437520-mRNA-1:cds;Parent=Msa0437520-mRNA-1 |
| chr3_3 | CDS | 1291309 | 1291480 | 1291309 | ID=Msa0437520-mRNA-1:cds;Parent=Msa0437520-mRNA-1 |
| chr3_3 | CDS | 1291050 | 1291231 | 1291050 | ID=Msa0437520-mRNA-1:cds;Parent=Msa0437520-mRNA-1 |
| chr3_3 | CDS | 1290787 | 1290945 | 1290787 | ID=Msa0437520-mRNA-1:cds;Parent=Msa0437520-mRNA-1 |
| chr3_3 | CDS | 1290395 | 1290695 | 1290395 | ID=Msa0437520-mRNA-1:cds;Parent=Msa0437520-mRNA-1 |
| chr3_3 | three_prime_UTR | 1290237 | 1290394 | 1290237 | ID=Msa0437520-mRNA-1:three_prime_utr;Parent=Msa0437520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
