Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146680 | sp|P25804|CYSP_PEA | 93.305 | 239 | 16 | 0 | 14 | 252 | 123 | 361 | 3.59e-171 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146680 | A0A396JH07 | 97.908 | 239 | 5 | 0 | 14 | 252 | 126 | 364 | 2.44e-175 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003090 | Msa0146680 | 0.909859 | 3.570295e-82 | -8.615850e-47 |
| Msa0050650 | Msa0146680 | 0.969004 | 1.728057e-129 | -8.615850e-47 |
| Msa0050690 | Msa0146680 | 0.971653 | 1.669127e-133 | -8.615850e-47 |
| Msa0050800 | Msa0146680 | 0.902044 | 1.448190e-78 | -8.615850e-47 |
| Msa0053020 | Msa0146680 | 0.805968 | 1.033100e-49 | -8.615850e-47 |
| Msa0146680 | Msa0435010 | 0.804720 | 1.886561e-49 | -8.615850e-47 |
| Msa0146680 | Msa0479030 | 0.825709 | 4.043612e-54 | -8.615850e-47 |
| Msa0146680 | Msa0479100 | 0.810699 | 1.012499e-50 | -8.615850e-47 |
| Msa0146680 | Msa0709660 | 0.813500 | 2.480968e-51 | -8.615850e-47 |
| Msa0146680 | Msa0947430 | -0.803463 | 3.444633e-49 | -8.615850e-47 |
| Msa0146680 | Msa1180050 | 0.810343 | 1.208353e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146680 | MtrunA17_Chr1g0155781 | 97.908 | 239 | 5 | 0 | 14 | 252 | 126 | 364 | 4.70e-179 | 496 |
| Msa0146680 | MtrunA17_Chr4g0035551 | 80.328 | 244 | 46 | 2 | 10 | 252 | 118 | 360 | 3.95e-149 | 420 |
| Msa0146680 | MtrunA17_Chr1g0199131 | 62.605 | 238 | 89 | 0 | 15 | 252 | 133 | 370 | 1.12e-115 | 336 |
| Msa0146680 | MtrunA17_Chr4g0036731 | 61.066 | 244 | 57 | 5 | 10 | 252 | 118 | 324 | 6.52e-100 | 294 |
| Msa0146680 | MtrunA17_Chr4g0036281 | 58.436 | 243 | 69 | 4 | 10 | 252 | 118 | 328 | 7.05e-97 | 286 |
| Msa0146680 | MtrunA17_Chr4g0037291 | 58.436 | 243 | 69 | 4 | 10 | 252 | 159 | 369 | 1.14e-96 | 287 |
| Msa0146680 | MtrunA17_Chr4g0041521 | 44.643 | 224 | 102 | 6 | 23 | 240 | 124 | 331 | 7.34e-58 | 187 |
| Msa0146680 | MtrunA17_Chr4g0040881 | 44.583 | 240 | 103 | 8 | 13 | 240 | 115 | 336 | 1.07e-57 | 187 |
| Msa0146680 | MtrunA17_Chr4g0041061 | 44.583 | 240 | 103 | 8 | 13 | 240 | 115 | 336 | 1.21e-57 | 187 |
| Msa0146680 | MtrunA17_Chr4g0060251 | 45.175 | 228 | 97 | 7 | 23 | 240 | 127 | 336 | 1.96e-57 | 186 |
| Msa0146680 | MtrunA17_Chr4g0041481 | 44.643 | 224 | 102 | 6 | 23 | 240 | 124 | 331 | 2.02e-57 | 186 |
| Msa0146680 | MtrunA17_Chr1g0208261 | 44.783 | 230 | 107 | 6 | 7 | 233 | 163 | 375 | 1.35e-56 | 188 |
| Msa0146680 | MtrunA17_Chr5g0405751 | 44.737 | 228 | 98 | 7 | 23 | 240 | 126 | 335 | 3.02e-56 | 183 |
| Msa0146680 | MtrunA17_Chr4g0024411 | 44.298 | 228 | 99 | 7 | 23 | 240 | 125 | 334 | 5.80e-56 | 182 |
| Msa0146680 | MtrunA17_Chr4g0041081 | 43.348 | 233 | 104 | 7 | 23 | 245 | 127 | 341 | 8.43e-56 | 182 |
| Msa0146680 | MtrunA17_Chr4g0053311 | 45.370 | 216 | 98 | 6 | 21 | 233 | 123 | 321 | 1.21e-54 | 179 |
| Msa0146680 | MtrunA17_Chr3g0134231 | 45.833 | 216 | 97 | 6 | 21 | 233 | 143 | 341 | 3.47e-54 | 181 |
| Msa0146680 | MtrunA17_Chr4g0040851 | 42.478 | 226 | 107 | 7 | 22 | 240 | 142 | 351 | 5.62e-54 | 177 |
| Msa0146680 | MtrunA17_Chr3g0116551 | 44.643 | 224 | 101 | 7 | 24 | 240 | 129 | 336 | 9.98e-54 | 177 |
| Msa0146680 | MtrunA17_Chr4g0070441 | 41.296 | 247 | 122 | 6 | 5 | 247 | 120 | 347 | 5.18e-53 | 175 |
| Msa0146680 | MtrunA17_Chr2g0283671 | 45.455 | 220 | 100 | 8 | 16 | 233 | 7 | 208 | 8.70e-53 | 171 |
| Msa0146680 | MtrunA17_Chr2g0315491 | 43.033 | 244 | 111 | 7 | 7 | 240 | 107 | 332 | 3.25e-52 | 172 |
| Msa0146680 | MtrunA17_Chr0c27g0493921 | 42.083 | 240 | 116 | 6 | 5 | 240 | 120 | 340 | 3.50e-52 | 172 |
| Msa0146680 | MtrunA17_Chr3g0144281 | 41.991 | 231 | 110 | 7 | 22 | 245 | 131 | 344 | 7.90e-52 | 172 |
| Msa0146680 | MtrunA17_Chr1g0153011 | 45.370 | 216 | 98 | 6 | 21 | 233 | 124 | 322 | 1.68e-50 | 171 |
| Msa0146680 | MtrunA17_Chr4g0058081 | 40.244 | 246 | 121 | 9 | 4 | 240 | 107 | 335 | 2.01e-50 | 168 |
| Msa0146680 | MtrunA17_Chr3g0142071 | 41.558 | 231 | 109 | 7 | 23 | 245 | 140 | 352 | 2.21e-50 | 171 |
| Msa0146680 | MtrunA17_Chr4g0041471 | 40.625 | 224 | 112 | 6 | 23 | 240 | 125 | 333 | 4.64e-50 | 167 |
| Msa0146680 | MtrunA17_Chr2g0283901 | 40.851 | 235 | 110 | 8 | 21 | 245 | 137 | 352 | 9.18e-49 | 167 |
| Msa0146680 | MtrunA17_Chr2g0319991 | 42.424 | 231 | 110 | 9 | 23 | 246 | 126 | 340 | 1.17e-48 | 163 |
| Msa0146680 | MtrunA17_Chr2g0325121 | 42.991 | 214 | 103 | 6 | 23 | 233 | 120 | 317 | 1.30e-48 | 163 |
| Msa0146680 | MtrunA17_Chr8g0379151 | 42.056 | 214 | 104 | 6 | 22 | 233 | 156 | 351 | 1.38e-47 | 162 |
| Msa0146680 | MtrunA17_Chr8g0379671 | 56.296 | 135 | 45 | 2 | 64 | 198 | 23 | 143 | 1.87e-47 | 155 |
| Msa0146680 | MtrunA17_Chr7g0248391 | 38.222 | 225 | 116 | 7 | 22 | 240 | 122 | 329 | 4.68e-44 | 151 |
| Msa0146680 | MtrunA17_Chr7g0248811 | 37.946 | 224 | 118 | 6 | 22 | 240 | 120 | 327 | 9.32e-44 | 150 |
| Msa0146680 | MtrunA17_Chr2g0283741 | 37.826 | 230 | 113 | 8 | 24 | 242 | 142 | 352 | 6.49e-43 | 149 |
| Msa0146680 | MtrunA17_Chr2g0311471 | 37.705 | 244 | 120 | 8 | 13 | 245 | 120 | 342 | 6.38e-38 | 135 |
| Msa0146680 | MtrunA17_Chr1g0156161 | 37.838 | 222 | 118 | 6 | 21 | 239 | 47 | 251 | 1.60e-36 | 130 |
| Msa0146680 | MtrunA17_Chr2g0311381 | 34.818 | 247 | 123 | 11 | 17 | 247 | 123 | 347 | 3.53e-34 | 125 |
| Msa0146680 | MtrunA17_Chr2g0311391 | 33.191 | 235 | 123 | 9 | 23 | 245 | 155 | 367 | 8.83e-31 | 117 |
| Msa0146680 | MtrunA17_Chr2g0283751 | 46.789 | 109 | 46 | 2 | 21 | 128 | 141 | 238 | 8.85e-28 | 107 |
| Msa0146680 | MtrunA17_Chr7g0271031 | 30.534 | 262 | 141 | 9 | 11 | 245 | 132 | 379 | 2.13e-24 | 100 |
| Msa0146680 | MtrunA17_Chr7g0271041 | 29.658 | 263 | 144 | 9 | 10 | 245 | 87 | 335 | 1.60e-23 | 97.4 |
| Msa0146680 | MtrunA17_Chr1g0156771 | 46.018 | 113 | 49 | 3 | 21 | 130 | 53 | 156 | 1.27e-22 | 90.9 |
| Msa0146680 | MtrunA17_Chr7g0248421 | 35.065 | 154 | 88 | 4 | 47 | 199 | 57 | 199 | 1.03e-19 | 84.3 |
| Msa0146680 | MtrunA17_Chr2g0311091 | 52.941 | 68 | 23 | 2 | 6 | 73 | 126 | 184 | 9.12e-14 | 67.8 |
| Msa0146680 | MtrunA17_Chr2g0283661 | 34.513 | 113 | 58 | 5 | 141 | 249 | 168 | 268 | 1.06e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146680 | AT4G39090.1 | 79.508 | 244 | 48 | 2 | 10 | 252 | 122 | 364 | 1.48e-148 | 419 |
| Msa0146680 | AT2G21430.1 | 78.689 | 244 | 50 | 2 | 10 | 252 | 119 | 361 | 1.29e-146 | 414 |
| Msa0146680 | AT4G16190.1 | 77.500 | 240 | 51 | 3 | 15 | 252 | 132 | 370 | 1.52e-131 | 376 |
| Msa0146680 | AT3G54940.2 | 62.762 | 239 | 89 | 0 | 14 | 252 | 128 | 366 | 8.36e-121 | 349 |
| Msa0146680 | AT3G54940.3 | 62.416 | 149 | 56 | 0 | 14 | 162 | 128 | 276 | 7.65e-71 | 219 |
| Msa0146680 | AT5G60360.1 | 46.288 | 229 | 101 | 6 | 23 | 245 | 141 | 353 | 6.24e-58 | 188 |
| Msa0146680 | AT1G06260.1 | 43.600 | 250 | 113 | 9 | 5 | 245 | 109 | 339 | 1.96e-57 | 186 |
| Msa0146680 | AT5G60360.3 | 47.085 | 223 | 96 | 6 | 23 | 239 | 141 | 347 | 5.07e-57 | 186 |
| Msa0146680 | AT3G19400.1 | 44.828 | 232 | 103 | 8 | 23 | 245 | 130 | 345 | 1.28e-56 | 185 |
| Msa0146680 | AT5G60360.2 | 46.847 | 222 | 96 | 6 | 23 | 238 | 141 | 346 | 1.37e-56 | 185 |
| Msa0146680 | AT4G36880.1 | 45.622 | 217 | 92 | 6 | 23 | 233 | 145 | 341 | 8.26e-56 | 183 |
| Msa0146680 | AT3G45310.1 | 45.536 | 224 | 100 | 6 | 23 | 240 | 141 | 348 | 1.49e-55 | 182 |
| Msa0146680 | AT1G47128.1 | 42.739 | 241 | 108 | 7 | 3 | 233 | 113 | 333 | 2.10e-55 | 184 |
| Msa0146680 | AT3G19390.1 | 45.106 | 235 | 100 | 9 | 21 | 245 | 127 | 342 | 4.28e-55 | 183 |
| Msa0146680 | AT1G09850.1 | 43.290 | 231 | 105 | 7 | 23 | 245 | 118 | 330 | 1.05e-54 | 182 |
| Msa0146680 | AT3G45310.2 | 45.045 | 222 | 100 | 6 | 23 | 238 | 141 | 346 | 3.66e-54 | 178 |
| Msa0146680 | AT5G43060.1 | 46.262 | 214 | 95 | 6 | 23 | 233 | 138 | 334 | 2.50e-53 | 179 |
| Msa0146680 | AT5G50260.1 | 44.493 | 227 | 103 | 7 | 21 | 240 | 124 | 334 | 3.16e-53 | 176 |
| Msa0146680 | AT4G35350.1 | 42.308 | 234 | 105 | 7 | 22 | 245 | 136 | 349 | 6.16e-53 | 175 |
| Msa0146680 | AT3G48340.1 | 45.161 | 217 | 93 | 6 | 23 | 233 | 128 | 324 | 6.40e-52 | 172 |
| Msa0146680 | AT1G20850.1 | 43.043 | 230 | 107 | 7 | 23 | 245 | 138 | 350 | 8.06e-52 | 172 |
| Msa0146680 | AT5G45890.1 | 39.919 | 248 | 120 | 7 | 5 | 240 | 107 | 337 | 2.82e-51 | 171 |
| Msa0146680 | AT3G43960.1 | 45.116 | 215 | 100 | 6 | 23 | 233 | 127 | 327 | 1.71e-50 | 169 |
| Msa0146680 | AT4G23520.1 | 40.084 | 237 | 115 | 8 | 18 | 245 | 128 | 346 | 6.46e-50 | 167 |
| Msa0146680 | AT2G34080.1 | 40.351 | 228 | 111 | 8 | 20 | 240 | 127 | 336 | 1.04e-46 | 159 |
| Msa0146680 | AT1G29090.1 | 41.441 | 222 | 108 | 8 | 25 | 240 | 141 | 346 | 1.09e-45 | 156 |
| Msa0146680 | AT3G48350.1 | 42.273 | 220 | 99 | 9 | 23 | 234 | 126 | 325 | 1.42e-44 | 154 |
| Msa0146680 | AT1G29080.1 | 40.167 | 239 | 116 | 9 | 13 | 245 | 125 | 342 | 2.50e-44 | 152 |
| Msa0146680 | AT4G11310.1 | 37.118 | 229 | 112 | 7 | 23 | 240 | 137 | 344 | 3.35e-43 | 150 |
| Msa0146680 | AT4G11320.2 | 36.681 | 229 | 113 | 7 | 23 | 240 | 144 | 351 | 2.27e-42 | 148 |
| Msa0146680 | AT4G11320.1 | 36.681 | 229 | 113 | 7 | 23 | 240 | 144 | 351 | 2.27e-42 | 148 |
| Msa0146680 | AT2G27420.1 | 38.073 | 218 | 107 | 6 | 25 | 233 | 130 | 328 | 8.77e-42 | 146 |
| Msa0146680 | AT3G49340.1 | 34.274 | 248 | 141 | 6 | 1 | 243 | 105 | 335 | 8.61e-41 | 143 |
| Msa0146680 | AT3G19400.2 | 46.980 | 149 | 69 | 3 | 23 | 168 | 130 | 271 | 1.13e-40 | 142 |
| Msa0146680 | AT4G35350.2 | 45.946 | 148 | 71 | 2 | 22 | 168 | 136 | 275 | 8.15e-40 | 139 |
| Msa0146680 | AT3G48350.2 | 43.624 | 149 | 70 | 4 | 23 | 167 | 126 | 264 | 6.41e-31 | 116 |
| Msa0146680 | AT1G29110.1 | 34.529 | 223 | 110 | 9 | 25 | 240 | 132 | 325 | 8.79e-31 | 117 |
| Msa0146680 | AT4G01610.1 | 31.325 | 249 | 129 | 9 | 19 | 241 | 99 | 331 | 5.92e-21 | 90.9 |
| Msa0146680 | AT1G02305.1 | 30.645 | 248 | 130 | 8 | 23 | 244 | 106 | 337 | 6.29e-21 | 90.9 |
| Msa0146680 | AT4G01610.2 | 30.522 | 249 | 131 | 9 | 19 | 241 | 99 | 331 | 7.73e-19 | 84.7 |
| Msa0146680 | AT1G02300.1 | 29.148 | 223 | 124 | 7 | 42 | 244 | 146 | 354 | 3.42e-17 | 80.5 |
Find 74 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGACTTTGTATGCGAGTT+TGG | 0.265258 | 1_4:+6375311 | None:intergenic |
| TTTGGAAGGAGCAAATTATT+TGG | 0.286718 | 1_4:+6376402 | Msa0146680:CDS |
| GATTGAAGGAAAAGCCTTAC+TGG | 0.291151 | 1_4:+6378041 | Msa0146680:CDS |
| ATCCTTCCTCACCCCAATTC+TGG | 0.294023 | 1_4:-6378084 | None:intergenic |
| AGAATTCATGGGGCCAGAAT+TGG | 0.303276 | 1_4:+6378071 | Msa0146680:CDS |
| GTAAAGAATGGCCCTCTTGC+AGG | 0.324125 | 1_4:+6377740 | Msa0146680:CDS |
| TTACTAGATTTGCAGCAATT+TGG | 0.338194 | 1_4:-6377721 | None:intergenic |
| GATCATGGGGTTCTTCTAGT+TGG | 0.348875 | 1_4:+6377989 | Msa0146680:CDS |
| GGGGTTCTTCTAGTTGGTTT+TGG | 0.352074 | 1_4:+6377995 | Msa0146680:CDS |
| GAATTCATGGGGCCAGAATT+GGG | 0.378415 | 1_4:+6378072 | Msa0146680:CDS |
| CATCTGTGCCAAAGCACGTT+TGG | 0.391375 | 1_4:+6377967 | Msa0146680:CDS |
| ACTGGATCATAAAGAATTCA+TGG | 0.401274 | 1_4:+6378059 | Msa0146680:CDS |
| TTCGAATACATACTCCAGTC+TGG | 0.403345 | 1_4:+6377581 | Msa0146680:CDS |
| CGTGCTTTGGCACAGATGTA+TGG | 0.406234 | 1_4:-6377962 | None:intergenic |
| CCCATGATCCAAACGTGCTT+TGG | 0.406480 | 1_4:-6377975 | None:intergenic |
| GGGTTCATGCGGTTCGTGTT+GGG | 0.409026 | 1_4:+6376360 | Msa0146680:intron |
| CTTGCAGGATCCATCTCTTC+CGG | 0.413354 | 1_4:-6377636 | None:intergenic |
| AGGGTTCATGCGGTTCGTGT+TGG | 0.415010 | 1_4:+6376359 | Msa0146680:intron |
| TCGCGCCAATCAAAATCCTC+TGG | 0.420389 | 1_4:-6376182 | None:intergenic |
| CCAAAGCACGTTTGGATCAT+GGG | 0.425598 | 1_4:+6377975 | Msa0146680:CDS |
| CTATGCTCCCATTCGATTGA+AGG | 0.426934 | 1_4:+6378027 | Msa0146680:CDS |
| AATCCACTCCACATACATTT+CGG | 0.439462 | 1_4:-6378126 | None:intergenic |
| CGTCACTCCCGTCAAGGATC+AGG | 0.443966 | 1_4:+6376214 | Msa0146680:CDS |
| GCCAAAGCACGTTTGGATCA+TGG | 0.451166 | 1_4:+6377974 | Msa0146680:CDS |
| GAATTCTTTATGATCCAGTA+AGG | 0.473251 | 1_4:-6378055 | None:intergenic |
| GGAGCAAATTATTTGGCGAC+TGG | 0.478944 | 1_4:+6376409 | Msa0146680:CDS |
| AACAATTAGCTACCTGCAAG+AGG | 0.483963 | 1_4:-6377752 | None:intergenic |
| TGCGAGTTTGGAGGGGAAGG+AGG | 0.490670 | 1_4:+6375323 | Msa0146680:CDS |
| TCACAAGAATTACGTTCCTC+TGG | 0.490836 | 1_4:-6377524 | None:intergenic |
| CGCGCCAATCAAAATCCTCT+GGG | 0.504763 | 1_4:-6376181 | None:intergenic |
| CTGGATCATAAAGAATTCAT+GGG | 0.512632 | 1_4:+6378060 | Msa0146680:CDS |
| GCTGCAAATCTAGTAAAGAA+TGG | 0.519363 | 1_4:+6377728 | Msa0146680:CDS |
| TCTTAGTGAGCAACAGCTTG+TGG | 0.523786 | 1_4:+6376444 | Msa0146680:CDS |
| GACTTTGTATGCGAGTTTGG+AGG | 0.524131 | 1_4:+6375314 | Msa0146680:CDS |
| TCGAATACATACTCCAGTCT+GGG | 0.524172 | 1_4:+6377582 | Msa0146680:CDS |
| TTTGGAGGGGAAGGAGGAGA+CGG | 0.527064 | 1_4:+6375329 | Msa0146680:CDS |
| GATACATGCCTGATCCTTGA+CGG | 0.527318 | 1_4:-6376222 | None:intergenic |
| GAACGTAATTCTTGTGACTC+TGG | 0.537907 | 1_4:+6377530 | Msa0146680:CDS |
| AGATTGTTAGTAGGAAGAAT+CGG | 0.540576 | 1_4:-6376158 | None:intergenic |
| ACTTTGTATGCGAGTTTGGA+GGG | 0.542131 | 1_4:+6375315 | Msa0146680:CDS |
| TATGCTTACACCGGAAGAGA+TGG | 0.544908 | 1_4:+6377626 | Msa0146680:CDS |
| GTGCTTTGGCACAGATGTAT+GGG | 0.545478 | 1_4:-6377961 | None:intergenic |
| GGCCAGAATTGGGGTGAGGA+AGG | 0.548238 | 1_4:+6378082 | Msa0146680:CDS |
| TGTGACTCTGGCTGTAACGG+TGG | 0.548240 | 1_4:+6377542 | Msa0146680:CDS |
| AGTACAACTGGAGCTTTGGA+AGG | 0.555301 | 1_4:+6376388 | Msa0146680:CDS |
| TCCTCTGGGAGATTGTTAGT+AGG | 0.556352 | 1_4:-6376167 | None:intergenic |
| TCTTGTGACTCTGGCTGTAA+CGG | 0.557182 | 1_4:+6377539 | Msa0146680:CDS |
| GTATGCGAGTTTGGAGGGGA+AGG | 0.557350 | 1_4:+6375320 | Msa0146680:CDS |
| TGCAGAGGCCGAAATGTATG+TGG | 0.559622 | 1_4:+6378118 | Msa0146680:CDS |
| AACGACACTGAAGTTAGATA+CGG | 0.563918 | 1_4:-6377684 | None:intergenic |
| AATTCATGGGGCCAGAATTG+GGG | 0.569604 | 1_4:+6378073 | Msa0146680:CDS |
| ATACATGCCTGATCCTTGAC+GGG | 0.580358 | 1_4:-6376221 | None:intergenic |
| GAGCAAATTATTTGGCGACT+GGG | 0.581395 | 1_4:+6376410 | Msa0146680:CDS |
| ATGGGGCCAGAATTGGGGTG+AGG | 0.585321 | 1_4:+6378078 | Msa0146680:CDS |
| CTGATCCTTGACGGGAGTGA+CGG | 0.594529 | 1_4:-6376213 | None:intergenic |
| AGATTGAGCTGCAGCAACAG+TGG | 0.595282 | 1_4:-6378158 | None:intergenic |
| CTTTGTATGCGAGTTTGGAG+GGG | 0.600398 | 1_4:+6375316 | Msa0146680:CDS |
| TGGTGTGATTAGGGTTCATG+CGG | 0.605339 | 1_4:+6376349 | Msa0146680:intron |
| TGGTGCCGTCACTCCCGTCA+AGG | 0.610158 | 1_4:+6376208 | Msa0146680:CDS |
| CAAAGCACGTTTGGATCATG+GGG | 0.618631 | 1_4:+6377976 | Msa0146680:CDS |
| AGGCCGAAATGTATGTGGAG+TGG | 0.625354 | 1_4:+6378123 | Msa0146680:CDS |
| CGAATACATACTCCAGTCTG+GGG | 0.633443 | 1_4:+6377583 | Msa0146680:CDS |
| TGCAGCAACAGTGGAGACCA+TGG | 0.639409 | 1_4:-6378149 | None:intergenic |
| GGATATTATAAGATCTGCAG+AGG | 0.643121 | 1_4:+6378103 | Msa0146680:CDS |
| AATCTTGCAGTGTGATCCAG+AGG | 0.643554 | 1_4:+6377508 | Msa0146680:intron |
| TGTATGTGGAGTGGATTCCA+TGG | 0.649722 | 1_4:+6378132 | Msa0146680:CDS |
| ACAATTAGCTACCTGCAAGA+GGG | 0.660807 | 1_4:-6377751 | None:intergenic |
| GCTTGTGGATTGTGATCATG+TGG | 0.675150 | 1_4:+6376459 | Msa0146680:CDS |
| GAAAAGGACTATGCTTACAC+CGG | 0.677300 | 1_4:+6377617 | Msa0146680:CDS |
| TCCTACTAACAATCTCCCAG+AGG | 0.684912 | 1_4:+6376166 | Msa0146680:CDS |
| TGGATCATAAAGAATTCATG+GGG | 0.698117 | 1_4:+6378061 | Msa0146680:CDS |
| GAATACATACTCCAGTCTGG+GGG | 0.711512 | 1_4:+6377584 | Msa0146680:CDS |
| CAGTTGCTATCAATGCTGCG+TGG | 0.724510 | 1_4:+6377909 | Msa0146680:intron |
| TGGATGCAGACATATATGAG+TGG | 0.766052 | 1_4:+6377929 | Msa0146680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAATTATAATATGCT+TGG | + | chr1_4:6375979-6375998 | Msa0146680:intron | 10.0% |
| !!! | TACTAATTTTCTTTTATATT+TGG | + | chr1_4:6376247-6376266 | Msa0146680:intron | 10.0% |
| !! | AACAAAAATTTAAACAAAAA+AGG | - | chr1_4:6376509-6376528 | None:intergenic | 10.0% |
| !! | TTTGTTTATTTATTTATATG+TGG | + | chr1_4:6376693-6376712 | Msa0146680:intron | 10.0% |
| !!! | ATTTATTTTTTTAGATGAAG+TGG | + | chr1_4:6375628-6375647 | Msa0146680:intron | 15.0% |
| !! | ATGAATATTTGTAAACTTAA+AGG | + | chr1_4:6375853-6375872 | Msa0146680:intron | 15.0% |
| !! | AAAATATGATGTCAATAATT+TGG | - | chr1_4:6375919-6375938 | None:intergenic | 15.0% |
| !!! | TTTAAATAGTTTTATTTCCT+TGG | - | chr1_4:6375966-6375985 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTATATTTGGAA+CGG | + | chr1_4:6376252-6376271 | Msa0146680:intron | 15.0% |
| !! | AATTGAATTGAATCAATAAT+TGG | + | chr1_4:6376596-6376615 | Msa0146680:intron | 15.0% |
| !! | TAATAATAATATTATGGATG+AGG | - | chr1_4:6377290-6377309 | None:intergenic | 15.0% |
| !! | AAACAAAAACATCAAAATAA+GGG | - | chr1_4:6377348-6377367 | None:intergenic | 15.0% |
| !! | TAAACAAAAACATCAAAATA+AGG | - | chr1_4:6377349-6377368 | None:intergenic | 15.0% |
| !!! | TTAATTTTATAGTGATGTAA+AGG | + | chr1_4:6377366-6377385 | Msa0146680:intron | 15.0% |
| !!! | TATCTTTTAGCATAAAAAAA+TGG | - | chr1_4:6377446-6377465 | None:intergenic | 15.0% |
| !! | TTAATGATTAAGCATGATTA+TGG | + | chr1_4:6376299-6376318 | Msa0146680:intron | 20.0% |
| !!! | ATTGATGATTTGTTTTGATT+TGG | + | chr1_4:6376329-6376348 | Msa0146680:intron | 20.0% |
| !!! | TTTGTTTAAATTTTTGTTGC+AGG | + | chr1_4:6376511-6376530 | Msa0146680:intron | 20.0% |
| !! | TTCAATTCAATTCATGAATT+AGG | - | chr1_4:6376588-6376607 | None:intergenic | 20.0% |
| !!! | AGTACTTTCATTTTTAAAGA+TGG | + | chr1_4:6377059-6377078 | Msa0146680:intron | 20.0% |
| !! | GTAATAATCATAATCAAAAG+AGG | - | chr1_4:6377195-6377214 | None:intergenic | 20.0% |
| !! | AACAAAAACATCAAAATAAG+GGG | - | chr1_4:6377347-6377366 | None:intergenic | 20.0% |
| !! | AATTCGTATCATAAAAATTC+GGG | - | chr1_4:6377846-6377865 | None:intergenic | 20.0% |
| !! | CAATTCGTATCATAAAAATT+CGG | - | chr1_4:6377847-6377866 | None:intergenic | 20.0% |
| ! | CCAACAAGATTATAATCAAA+AGG | - | chr1_4:6375543-6375562 | None:intergenic | 25.0% |
| !!! | CCTTTTGATTATAATCTTGT+TGG | + | chr1_4:6375540-6375559 | Msa0146680:intron | 25.0% |
| !!! | AGACAATTTTTTCATACTTG+GGG | - | chr1_4:6375820-6375839 | None:intergenic | 25.0% |
| !!! | GAGACAATTTTTTCATACTT+GGG | - | chr1_4:6375821-6375840 | None:intergenic | 25.0% |
| ! | TCCTTAGAATTAATTAACCA+AGG | + | chr1_4:6375946-6375965 | Msa0146680:intron | 25.0% |
| ! | TCCTTGGTTAATTAATTCTA+AGG | - | chr1_4:6375950-6375969 | None:intergenic | 25.0% |
| !!! | TCTTTTTATTTTGGTGTGTA+TGG | + | chr1_4:6376535-6376554 | Msa0146680:intron | 25.0% |
| ! | GTTTGTGGTTATTATTTGTT+TGG | + | chr1_4:6376557-6376576 | Msa0146680:intron | 25.0% |
| !!! | AATTTGTTAATCCAAAGAGA+TGG | + | chr1_4:6376788-6376807 | Msa0146680:intron | 25.0% |
| ! | GACTCTAATTATTGTAAAGA+GGG | - | chr1_4:6377121-6377140 | None:intergenic | 25.0% |
| ! | AGACTCTAATTATTGTAAAG+AGG | - | chr1_4:6377122-6377141 | None:intergenic | 25.0% |
| ! | CATTAATTAATATGCATCGA+TGG | - | chr1_4:6377482-6377501 | None:intergenic | 25.0% |
| ! | CATCGATGCATATTAATTAA+TGG | + | chr1_4:6377480-6377499 | Msa0146680:intron | 25.0% |
| !! | AAGTCGGTATTTCTATAATT+AGG | - | chr1_4:6377874-6377893 | None:intergenic | 25.0% |
| ACCATTGAGAGAAAGATTTA+AGG | + | chr1_4:6375502-6375521 | Msa0146680:intron | 30.0% | |
| TCCTTAAATCTTTCTCTCAA+TGG | - | chr1_4:6375506-6375525 | None:intergenic | 30.0% | |
| !!! | AGTAGTGTTATTTTCTCTGT+AGG | - | chr1_4:6375600-6375619 | None:intergenic | 30.0% |
| !!! | GACAATTTTTTCATACTTGG+GGG | - | chr1_4:6375819-6375838 | None:intergenic | 30.0% |
| !!! | CGAGACAATTTTTTCATACT+TGG | - | chr1_4:6375822-6375841 | None:intergenic | 30.0% |
| !! | AAACTTAAAGGTACTGTGTA+AGG | + | chr1_4:6375865-6375884 | Msa0146680:intron | 30.0% |
| !! | AACTTAAAGGTACTGTGTAA+GGG | + | chr1_4:6375866-6375885 | Msa0146680:intron | 30.0% |
| AGATTGTTAGTAGGAAGAAT+CGG | - | chr1_4:6376161-6376180 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATTTGGTGTGATT+AGG | + | chr1_4:6376339-6376358 | Msa0146680:intron | 30.0% |
| !!! | GTTTTGATTTGGTGTGATTA+GGG | + | chr1_4:6376340-6376359 | Msa0146680:intron | 30.0% |
| TTTGGAAGGAGCAAATTATT+TGG | + | chr1_4:6376402-6376421 | Msa0146680:CDS | 30.0% | |
| !! | GTTGCAGGTTCTTTTTATTT+TGG | + | chr1_4:6376526-6376545 | Msa0146680:intron | 30.0% |
| ! | TTATATGTGGATTACAAACC+TGG | + | chr1_4:6376706-6376725 | Msa0146680:intron | 30.0% |
| !!! | TGGAACCATTTGTTTTAGAA+TGG | + | chr1_4:6376808-6376827 | Msa0146680:intron | 30.0% |
| !! | GACAACCATTCTAAAACAAA+TGG | - | chr1_4:6376816-6376835 | None:intergenic | 30.0% |
| GATCATAATGTGTTCCTATA+TGG | + | chr1_4:6376904-6376923 | Msa0146680:intron | 30.0% | |
| ! | TTCTTCTTAAGCTGTTTCAA+CGG | + | chr1_4:6376977-6376996 | Msa0146680:intron | 30.0% |
| TTATGGATGAGGATAAAACT+CGG | - | chr1_4:6377279-6377298 | None:intergenic | 30.0% | |
| ! | TAATTAATATGCATCGATGG+TGG | - | chr1_4:6377479-6377498 | None:intergenic | 30.0% |
| TTACTAGATTTGCAGCAATT+TGG | - | chr1_4:6377724-6377743 | None:intergenic | 30.0% | |
| GAATTCTTTATGATCCAGTA+AGG | - | chr1_4:6378058-6378077 | None:intergenic | 30.0% | |
| ACTGGATCATAAAGAATTCA+TGG | + | chr1_4:6378059-6378078 | Msa0146680:CDS | 30.0% | |
| CTGGATCATAAAGAATTCAT+GGG | + | chr1_4:6378060-6378079 | Msa0146680:CDS | 30.0% | |
| TGGATCATAAAGAATTCATG+GGG | + | chr1_4:6378061-6378080 | Msa0146680:CDS | 30.0% | |
| !! | TTTTGGAGGGTGTGAAATAT+CGG | - | chr1_4:6375368-6375387 | None:intergenic | 35.0% |
| ! | GATTTGTTTGAGAGTTTGGA+GGG | - | chr1_4:6375406-6375425 | None:intergenic | 35.0% |
| TCTTAAATATCTGCAACTCG+AGG | - | chr1_4:6375428-6375447 | None:intergenic | 35.0% | |
| TTTGAGAGACTTTCTCTCAA+TGG | - | chr1_4:6375473-6375492 | None:intergenic | 35.0% | |
| ! | ATACCATGAGTTGAATGCAT+TGG | - | chr1_4:6375573-6375592 | None:intergenic | 35.0% |
| ACACACAATTGTGATGTCTT+GGG | + | chr1_4:6375672-6375691 | Msa0146680:intron | 35.0% | |
| TGATAAATGCCGAAATTGCA+AGG | - | chr1_4:6375723-6375742 | None:intergenic | 35.0% | |
| !! | ACTTAAAGGTACTGTGTAAG+GGG | + | chr1_4:6375867-6375886 | Msa0146680:intron | 35.0% |
| ! | TTTTAGTACAACTGGAGCTT+TGG | + | chr1_4:6376384-6376403 | Msa0146680:CDS | 35.0% |
| !! | ATTTTGGTGTGTATGGTTTG+TGG | + | chr1_4:6376542-6376561 | Msa0146680:intron | 35.0% |
| TCCTTGAGATGTTCTGTTAT+TGG | + | chr1_4:6376632-6376651 | Msa0146680:intron | 35.0% | |
| ACCAATAACAGAACATCTCA+AGG | - | chr1_4:6376636-6376655 | None:intergenic | 35.0% | |
| AACAAATGGTTCCATCTCTT+TGG | - | chr1_4:6376802-6376821 | None:intergenic | 35.0% | |
| GATTCAACTCTACTCCATAT+AGG | - | chr1_4:6376921-6376940 | None:intergenic | 35.0% | |
| TAAGAAGAATCCAACCAAAC+AGG | - | chr1_4:6376966-6376985 | None:intergenic | 35.0% | |
| ! | TCTTCTTAAGCTGTTTCAAC+GGG | + | chr1_4:6376978-6376997 | Msa0146680:intron | 35.0% |
| !!! | GACTGAGTTTTTTAAACCTG+AGG | + | chr1_4:6377236-6377255 | Msa0146680:intron | 35.0% |
| TTTAAACCTGAGGTCAAAGA+TGG | + | chr1_4:6377246-6377265 | Msa0146680:intron | 35.0% | |
| TTAAACCTGAGGTCAAAGAT+GGG | + | chr1_4:6377247-6377266 | Msa0146680:intron | 35.0% | |
| ACATGAGAATACAACAAGCA+TGG | - | chr1_4:6377418-6377437 | None:intergenic | 35.0% | |
| AACGACACTGAAGTTAGATA+CGG | - | chr1_4:6377687-6377706 | None:intergenic | 35.0% | |
| GCTGCAAATCTAGTAAAGAA+TGG | + | chr1_4:6377728-6377747 | Msa0146680:CDS | 35.0% | |
| !! | ATACCGACTTATGCTTTGTT+TGG | + | chr1_4:6377884-6377903 | Msa0146680:intron | 35.0% |
| GGATATTATAAGATCTGCAG+AGG | + | chr1_4:6378103-6378122 | Msa0146680:CDS | 35.0% | |
| AATCCACTCCACATACATTT+CGG | - | chr1_4:6378129-6378148 | None:intergenic | 35.0% | |
| ACTTTGTATGCGAGTTTGGA+GGG | + | chr1_4:6375315-6375334 | Msa0146680:CDS | 40.0% | |
| ! | GGATTTGTTTGAGAGTTTGG+AGG | - | chr1_4:6375407-6375426 | None:intergenic | 40.0% |
| ! | CGAGGATTTGTTTGAGAGTT+TGG | - | chr1_4:6375410-6375429 | None:intergenic | 40.0% |
| AGTCCAATGCATTCAACTCA+TGG | + | chr1_4:6375567-6375586 | Msa0146680:intron | 40.0% | |
| CACACACAATTGTGATGTCT+TGG | + | chr1_4:6375671-6375690 | Msa0146680:intron | 40.0% | |
| AAATGCCGAAATTGCAAGGT+CGG | - | chr1_4:6375719-6375738 | None:intergenic | 40.0% | |
| CGGCATTTATCAGTTGAGTT+AGG | + | chr1_4:6375731-6375750 | Msa0146680:intron | 40.0% | |
| !! | CTTAAAGGTACTGTGTAAGG+GGG | + | chr1_4:6375868-6375887 | Msa0146680:intron | 40.0% |
| !! | ATCTCCCAGAGGATTTTGAT+TGG | + | chr1_4:6376177-6376196 | Msa0146680:CDS | 40.0% |
| ! | TGTTGGGCTTTTAGTACAAC+TGG | + | chr1_4:6376376-6376395 | Msa0146680:CDS | 40.0% |
| GAGCAAATTATTTGGCGACT+GGG | + | chr1_4:6376410-6376429 | Msa0146680:CDS | 40.0% | |
| ACTGAATTGAACCCACATCT+TGG | + | chr1_4:6376732-6376751 | Msa0146680:intron | 40.0% | |
| AACCAACTCAACCAAGATGT+GGG | - | chr1_4:6376746-6376765 | None:intergenic | 40.0% | |
| TAACCAACTCAACCAAGATG+TGG | - | chr1_4:6376747-6376766 | None:intergenic | 40.0% | |
| !! | CATCTTGGTTGAGTTGGTTA+TGG | + | chr1_4:6376747-6376766 | Msa0146680:intron | 40.0% |
| !! | TGGTTGAGTTGGTTATGGTT+TGG | + | chr1_4:6376752-6376771 | Msa0146680:intron | 40.0% |
| !! | GGTTGAGTTGGTTATGGTTT+GGG | + | chr1_4:6376753-6376772 | Msa0146680:intron | 40.0% |
| TGGAGTAGAGTTGAATCACT+TGG | + | chr1_4:6376924-6376943 | Msa0146680:intron | 40.0% | |
| AAGAATCCAACCAAACAGGT+AGG | - | chr1_4:6376962-6376981 | None:intergenic | 40.0% | |
| TAGAGTCTGAGAAAGACTTG+AGG | + | chr1_4:6377134-6377153 | Msa0146680:intron | 40.0% | |
| CTTGAGGACTTCCTTAAGAT+CGG | + | chr1_4:6377150-6377169 | Msa0146680:intron | 40.0% | |
| ! | ACTTCCTTAAGATCGGTTCT+GGG | + | chr1_4:6377157-6377176 | Msa0146680:intron | 40.0% |
| TCACAAGAATTACGTTCCTC+TGG | - | chr1_4:6377527-6377546 | None:intergenic | 40.0% | |
| GAACGTAATTCTTGTGACTC+TGG | + | chr1_4:6377530-6377549 | Msa0146680:CDS | 40.0% | |
| TTCGAATACATACTCCAGTC+TGG | + | chr1_4:6377581-6377600 | Msa0146680:CDS | 40.0% | |
| TCGAATACATACTCCAGTCT+GGG | + | chr1_4:6377582-6377601 | Msa0146680:CDS | 40.0% | |
| GAAAAGGACTATGCTTACAC+CGG | + | chr1_4:6377617-6377636 | Msa0146680:CDS | 40.0% | |
| !! | CTTGCTTTTGTCAAACTTGC+AGG | - | chr1_4:6377654-6377673 | None:intergenic | 40.0% |
| ACAATTAGCTACCTGCAAGA+GGG | - | chr1_4:6377754-6377773 | None:intergenic | 40.0% | |
| AACAATTAGCTACCTGCAAG+AGG | - | chr1_4:6377755-6377774 | None:intergenic | 40.0% | |
| GCACCAAACAAAGCATAAGT+CGG | - | chr1_4:6377890-6377909 | None:intergenic | 40.0% | |
| TGGATGCAGACATATATGAG+TGG | + | chr1_4:6377929-6377948 | Msa0146680:CDS | 40.0% | |
| ! | GGCTTTTCCTTCAATCGAAT+GGG | - | chr1_4:6378037-6378056 | None:intergenic | 40.0% |
| ! | AGGCTTTTCCTTCAATCGAA+TGG | - | chr1_4:6378038-6378057 | None:intergenic | 40.0% |
| GATTGAAGGAAAAGCCTTAC+TGG | + | chr1_4:6378041-6378060 | Msa0146680:CDS | 40.0% | |
| GACTTTGTATGCGAGTTTGG+AGG | + | chr1_4:6375314-6375333 | Msa0146680:CDS | 45.0% | |
| CTTTGTATGCGAGTTTGGAG+GGG | + | chr1_4:6375316-6375335 | Msa0146680:CDS | 45.0% | |
| !!! | GGAAAAGAGAGGGTTTTGGA+GGG | - | chr1_4:6375381-6375400 | None:intergenic | 45.0% |
| !! | AGGAAAAGAGAGGGTTTTGG+AGG | - | chr1_4:6375382-6375401 | None:intergenic | 45.0% |
| ! | GGAAGGAAAAGAGAGGGTTT+TGG | - | chr1_4:6375385-6375404 | None:intergenic | 45.0% |
| TTGGAGGGAAGGAAAAGAGA+GGG | - | chr1_4:6375391-6375410 | None:intergenic | 45.0% | |
| TTTGGAGGGAAGGAAAAGAG+AGG | - | chr1_4:6375392-6375411 | None:intergenic | 45.0% | |
| TGTTTGAGAGTTTGGAGGGA+AGG | - | chr1_4:6375402-6375421 | None:intergenic | 45.0% | |
| GACATCCGACCTTGCAATTT+CGG | + | chr1_4:6375711-6375730 | Msa0146680:intron | 45.0% | |
| GGAGCAGTATTCTAAGCTAG+AGG | + | chr1_4:6376000-6376019 | Msa0146680:intron | 45.0% | |
| TCCTACTAACAATCTCCCAG+AGG | + | chr1_4:6376166-6376185 | Msa0146680:CDS | 45.0% | |
| ! | TCCTCTGGGAGATTGTTAGT+AGG | - | chr1_4:6376170-6376189 | None:intergenic | 45.0% |
| !!! | GATTTTGATTGGCGCGAGAA+TGG | + | chr1_4:6376188-6376207 | Msa0146680:CDS | 45.0% |
| ATACATGCCTGATCCTTGAC+GGG | - | chr1_4:6376224-6376243 | None:intergenic | 45.0% | |
| GATACATGCCTGATCCTTGA+CGG | - | chr1_4:6376225-6376244 | None:intergenic | 45.0% | |
| TGGTGTGATTAGGGTTCATG+CGG | + | chr1_4:6376349-6376368 | Msa0146680:intron | 45.0% | |
| !! | AGTACAACTGGAGCTTTGGA+AGG | + | chr1_4:6376388-6376407 | Msa0146680:CDS | 45.0% |
| GGAGCAAATTATTTGGCGAC+TGG | + | chr1_4:6376409-6376428 | Msa0146680:CDS | 45.0% | |
| TCTTAGTGAGCAACAGCTTG+TGG | + | chr1_4:6376444-6376463 | Msa0146680:CDS | 45.0% | |
| ! | GCTTGTGGATTGTGATCATG+TGG | + | chr1_4:6376459-6376478 | Msa0146680:CDS | 45.0% |
| TGGGTTCAATTCAGTTCACC+AGG | - | chr1_4:6376727-6376746 | None:intergenic | 45.0% | |
| AACCCACATCTTGGTTGAGT+TGG | + | chr1_4:6376741-6376760 | Msa0146680:intron | 45.0% | |
| TGCAATGAGTCCTACCTGTT+TGG | + | chr1_4:6376949-6376968 | Msa0146680:intron | 45.0% | |
| ATGAGTCCTACCTGTTTGGT+TGG | + | chr1_4:6376953-6376972 | Msa0146680:intron | 45.0% | |
| AAAGAGGGAGTGAGCACTTT+AGG | - | chr1_4:6377106-6377125 | None:intergenic | 45.0% | |
| ! | GACTTCCTTAAGATCGGTTC+TGG | + | chr1_4:6377156-6377175 | Msa0146680:intron | 45.0% |
| GTTTCCCAGAACCGATCTTA+AGG | - | chr1_4:6377164-6377183 | None:intergenic | 45.0% | |
| AATCTTGCAGTGTGATCCAG+AGG | + | chr1_4:6377508-6377527 | Msa0146680:intron | 45.0% | |
| TCTTGTGACTCTGGCTGTAA+CGG | + | chr1_4:6377539-6377558 | Msa0146680:CDS | 45.0% | |
| CGAATACATACTCCAGTCTG+GGG | + | chr1_4:6377583-6377602 | Msa0146680:CDS | 45.0% | |
| GAATACATACTCCAGTCTGG+GGG | + | chr1_4:6377584-6377603 | Msa0146680:CDS | 45.0% | |
| TATGCTTACACCGGAAGAGA+TGG | + | chr1_4:6377626-6377645 | Msa0146680:CDS | 45.0% | |
| GTGCTTTGGCACAGATGTAT+GGG | - | chr1_4:6377964-6377983 | None:intergenic | 45.0% | |
| CCAAAGCACGTTTGGATCAT+GGG | + | chr1_4:6377975-6377994 | Msa0146680:CDS | 45.0% | |
| CAAAGCACGTTTGGATCATG+GGG | + | chr1_4:6377976-6377995 | Msa0146680:CDS | 45.0% | |
| GATCATGGGGTTCTTCTAGT+TGG | + | chr1_4:6377989-6378008 | Msa0146680:CDS | 45.0% | |
| !! | GGGGTTCTTCTAGTTGGTTT+TGG | + | chr1_4:6377995-6378014 | Msa0146680:CDS | 45.0% |
| !!! | CTTCTAGTTGGTTTTGGCAG+TGG | + | chr1_4:6378001-6378020 | Msa0146680:CDS | 45.0% |
| CTATGCTCCCATTCGATTGA+AGG | + | chr1_4:6378027-6378046 | Msa0146680:CDS | 45.0% | |
| AGAATTCATGGGGCCAGAAT+TGG | + | chr1_4:6378071-6378090 | Msa0146680:CDS | 45.0% | |
| GAATTCATGGGGCCAGAATT+GGG | + | chr1_4:6378072-6378091 | Msa0146680:CDS | 45.0% | |
| AATTCATGGGGCCAGAATTG+GGG | + | chr1_4:6378073-6378092 | Msa0146680:CDS | 45.0% | |
| ! | TGTATGTGGAGTGGATTCCA+TGG | + | chr1_4:6378132-6378151 | Msa0146680:CDS | 45.0% |
| !! | CATAAATAATAATAATATTA+TGG | - | chr1_4:6377296-6377315 | None:intergenic | 5.0% |
| CGCGCCAATCAAAATCCTCT+GGG | - | chr1_4:6376184-6376203 | None:intergenic | 50.0% | |
| TCGCGCCAATCAAAATCCTC+TGG | - | chr1_4:6376185-6376204 | None:intergenic | 50.0% | |
| CACGCTCTGATGTCAACGTA+AGG | + | chr1_4:6377005-6377024 | Msa0146680:intron | 50.0% | |
| ACCTGAGGTCAAAGATGGGT+TGG | + | chr1_4:6377251-6377270 | Msa0146680:intron | 50.0% | |
| TCCAACCCATCTTTGACCTC+AGG | - | chr1_4:6377255-6377274 | None:intergenic | 50.0% | |
| TGGGGGAGTAGTGTCAGAAA+AGG | + | chr1_4:6377601-6377620 | Msa0146680:CDS | 50.0% | |
| CTTGCAGGATCCATCTCTTC+CGG | - | chr1_4:6377639-6377658 | None:intergenic | 50.0% | |
| GTAAAGAATGGCCCTCTTGC+AGG | + | chr1_4:6377740-6377759 | Msa0146680:CDS | 50.0% | |
| CAGTTGCTATCAATGCTGCG+TGG | + | chr1_4:6377909-6377928 | Msa0146680:intron | 50.0% | |
| CGTGCTTTGGCACAGATGTA+TGG | - | chr1_4:6377965-6377984 | None:intergenic | 50.0% | |
| CATCTGTGCCAAAGCACGTT+TGG | + | chr1_4:6377967-6377986 | Msa0146680:CDS | 50.0% | |
| GCCAAAGCACGTTTGGATCA+TGG | + | chr1_4:6377974-6377993 | Msa0146680:CDS | 50.0% | |
| CCCATGATCCAAACGTGCTT+TGG | - | chr1_4:6377978-6377997 | None:intergenic | 50.0% | |
| !!! | CTAGTTGGTTTTGGCAGTGG+TGG | + | chr1_4:6378004-6378023 | Msa0146680:CDS | 50.0% |
| ATCCTTCCTCACCCCAATTC+TGG | - | chr1_4:6378087-6378106 | None:intergenic | 50.0% | |
| TGCAGAGGCCGAAATGTATG+TGG | + | chr1_4:6378118-6378137 | Msa0146680:CDS | 50.0% | |
| AGGCCGAAATGTATGTGGAG+TGG | + | chr1_4:6378123-6378142 | Msa0146680:CDS | 50.0% | |
| AGATTGAGCTGCAGCAACAG+TGG | - | chr1_4:6378161-6378180 | None:intergenic | 50.0% | |
| GTATGCGAGTTTGGAGGGGA+AGG | + | chr1_4:6375320-6375339 | Msa0146680:CDS | 55.0% | |
| TTTGGAGGGGAAGGAGGAGA+CGG | + | chr1_4:6375329-6375348 | Msa0146680:CDS | 55.0% | |
| GATGTCTTGGGTTCGAACCC+AGG | + | chr1_4:6375684-6375703 | Msa0146680:intron | 55.0% | |
| AAGGTCGGATGTCGTGACCT+GGG | - | chr1_4:6375704-6375723 | None:intergenic | 55.0% | |
| !! | NTTACCGGCTCACGCTCAGA+AGG | + | chr1_4:6376133-6376152 | Msa0146680:intron | 55.0% |
| CTGATCCTTGACGGGAGTGA+CGG | - | chr1_4:6376216-6376235 | None:intergenic | 55.0% | |
| AGGGTTCATGCGGTTCGTGT+TGG | + | chr1_4:6376359-6376378 | Msa0146680:intron | 55.0% | |
| GGGTTCATGCGGTTCGTGTT+GGG | + | chr1_4:6376360-6376379 | Msa0146680:intron | 55.0% | |
| GGGAGTGAGCACTTTAGGCA+TGG | - | chr1_4:6377101-6377120 | None:intergenic | 55.0% | |
| TGTGACTCTGGCTGTAACGG+TGG | + | chr1_4:6377542-6377561 | Msa0146680:CDS | 55.0% | |
| TGCAGCAACAGTGGAGACCA+TGG | - | chr1_4:6378152-6378171 | None:intergenic | 55.0% | |
| TGCGAGTTTGGAGGGGAAGG+AGG | + | chr1_4:6375323-6375342 | Msa0146680:CDS | 60.0% | |
| CAAGGTCGGATGTCGTGACC+TGG | - | chr1_4:6375705-6375724 | None:intergenic | 60.0% | |
| CGTCACTCCCGTCAAGGATC+AGG | + | chr1_4:6376214-6376233 | Msa0146680:CDS | 60.0% | |
| CTGACACTACTCCCCCAGAC+TGG | - | chr1_4:6377598-6377617 | None:intergenic | 60.0% | |
| ATGGGGCCAGAATTGGGGTG+AGG | + | chr1_4:6378078-6378097 | Msa0146680:CDS | 60.0% | |
| GGCCAGAATTGGGGTGAGGA+AGG | + | chr1_4:6378082-6378101 | Msa0146680:CDS | 60.0% | |
| GGAGCCTTCTGAGCGTGAGC+CGG | - | chr1_4:6376140-6376159 | None:intergenic | 65.0% | |
| !! | TGGTGCCGTCACTCCCGTCA+AGG | + | chr1_4:6376208-6376227 | Msa0146680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6375312 | 6378183 | 6375312 | ID=Msa0146680;Name=Msa0146680 |
| chr1_4 | mRNA | 6375312 | 6378183 | 6375312 | ID=Msa0146680-mRNA-1;Parent=Msa0146680;Name=Msa0146680-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.8|1|1|5|0|252 |
| chr1_4 | exon | 6375312 | 6375350 | 6375312 | ID=Msa0146680-mRNA-1:exon:2782;Parent=Msa0146680-mRNA-1 |
| chr1_4 | exon | 6376152 | 6376235 | 6376152 | ID=Msa0146680-mRNA-1:exon:2783;Parent=Msa0146680-mRNA-1 |
| chr1_4 | exon | 6376361 | 6376480 | 6376361 | ID=Msa0146680-mRNA-1:exon:2784;Parent=Msa0146680-mRNA-1 |
| chr1_4 | exon | 6377518 | 6377761 | 6377518 | ID=Msa0146680-mRNA-1:exon:2785;Parent=Msa0146680-mRNA-1 |
| chr1_4 | exon | 6377912 | 6378183 | 6377912 | ID=Msa0146680-mRNA-1:exon:2786;Parent=Msa0146680-mRNA-1 |
| chr1_4 | CDS | 6375312 | 6375350 | 6375312 | ID=Msa0146680-mRNA-1:cds;Parent=Msa0146680-mRNA-1 |
| chr1_4 | CDS | 6376152 | 6376235 | 6376152 | ID=Msa0146680-mRNA-1:cds;Parent=Msa0146680-mRNA-1 |
| chr1_4 | CDS | 6376361 | 6376480 | 6376361 | ID=Msa0146680-mRNA-1:cds;Parent=Msa0146680-mRNA-1 |
| chr1_4 | CDS | 6377518 | 6377761 | 6377518 | ID=Msa0146680-mRNA-1:cds;Parent=Msa0146680-mRNA-1 |
| chr1_4 | CDS | 6377912 | 6378183 | 6377912 | ID=Msa0146680-mRNA-1:cds;Parent=Msa0146680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
