AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053830 MtrunA17_Chr1g0150781 97.288 553 15 0 1 553 1 553 0.0 1101
Msa0053830 MtrunA17_Chr3g0135961 67.029 552 168 4 8 553 6 549 0.0 718
Msa0053830 MtrunA17_Chr2g0299981 44.692 584 253 12 1 553 1 545 5.87e-154 451
Msa0053830 MtrunA17_Chr4g0070871 46.071 560 248 12 1 553 1 513 3.54e-148 436
Msa0053830 MtrunA17_Chr8g0389921 51.456 309 132 7 240 548 149 439 1.38e-88 280
Msa0053830 MtrunA17_Chr3g0112291 43.452 336 138 8 232 551 85 384 3.48e-78 251
Msa0053830 MtrunA17_Chr5g0396731 42.133 375 182 9 175 543 5 350 6.62e-76 244
Msa0053830 MtrunA17_Chr1g0158781 48.734 316 120 8 232 544 104 380 4.11e-74 240
Msa0053830 MtrunA17_Chr5g0435721 43.871 310 121 6 237 530 190 462 9.36e-69 229
Msa0053830 MtrunA17_Chr1g0150451 36.424 302 134 7 240 541 78 321 2.04e-47 168
Msa0053830 MtrunA17_Chr3g0136711 36.755 302 133 7 240 541 35 278 5.55e-47 166
Msa0053830 MtrunA17_Chr3g0126511 35.806 310 139 8 241 549 96 346 1.38e-42 156
Msa0053830 MtrunA17_Chr1g0212961 33.974 312 134 8 240 546 96 340 2.48e-42 155
Msa0053830 MtrunA17_Chr3g0105351 33.984 256 134 5 290 544 94 315 1.24e-36 138
Msa0053830 MtrunA17_Chr3g0105371 35.156 256 131 6 290 544 118 339 3.43e-36 138
Msa0053830 MtrunA17_Chr5g0430481 33.333 273 146 6 273 544 138 375 3.18e-35 136
Msa0053830 MtrunA17_Chr4g0050381 34.815 270 122 9 283 544 54 277 1.86e-32 125
Msa0053830 MtrunA17_Chr1g0171571 31.013 316 161 9 236 545 382 646 1.11e-31 129
Msa0053830 MtrunA17_Chr1g0194191 32.394 284 146 10 285 550 113 368 2.91e-31 125
Msa0053830 MtrunA17_Chr5g0407161 31.179 263 137 7 285 541 119 343 4.27e-30 121
Msa0053830 MtrunA17_Chr2g0293811 30.566 265 150 5 285 543 95 331 1.67e-29 119
Msa0053830 MtrunA17_Chr4g0065141 29.885 261 138 6 290 541 124 348 7.20e-29 118
Msa0053830 MtrunA17_Chr3g0144111 32.061 262 113 8 290 545 27 229 1.04e-28 115
Msa0053830 MtrunA17_Chr3g0138281 29.321 324 172 11 232 546 73 348 1.83e-28 117
Msa0053830 MtrunA17_Chr3g0115851 32.946 258 129 7 290 544 66 282 3.77e-28 114
Msa0053830 MtrunA17_Chr5g0426141 34.749 259 123 8 290 544 66 282 1.99e-27 112
Msa0053830 MtrunA17_Chr3g0136811 28.188 298 140 5 240 493 24 291 1.61e-26 111
Msa0053830 MtrunA17_Chr2g0279151 32.593 270 128 8 283 544 58 281 4.35e-26 108
Msa0053830 MtrunA17_Chr4g0001761 30.537 298 133 10 240 493 24 291 9.05e-26 108
Msa0053830 MtrunA17_Chr2g0317021 31.429 315 137 10 241 544 87 333 2.13e-25 107
Msa0053830 MtrunA17_Chr1g0150071 28.526 312 131 10 240 498 24 296 3.10e-25 107
Msa0053830 MtrunA17_Chr8g0360351 34.510 255 123 8 290 541 66 279 3.89e-25 105
Msa0053830 MtrunA17_Chr4g0051661 32.157 255 128 6 290 541 183 395 6.07e-25 107
Msa0053830 MtrunA17_Chr1g0185141 33.913 230 97 7 368 551 226 446 1.64e-24 108
Msa0053830 MtrunA17_Chr3g0127091 25.507 345 160 12 240 543 61 349 2.97e-22 99.0
Msa0053830 MtrunA17_Chr4g0066371 25.915 328 162 12 263 544 49 341 2.28e-21 96.7
Msa0053830 MtrunA17_Chr6g0483411 28.417 278 137 11 291 544 80 319 1.46e-20 92.8
Msa0053830 MtrunA17_Chr7g0243571 31.489 235 122 8 290 488 92 323 1.02e-19 92.0
Msa0053830 MtrunA17_Chr3g0133801 30.935 278 128 11 291 548 67 300 2.57e-19 90.5
Msa0053830 MtrunA17_Chr4g0067711 33.766 231 121 9 290 491 91 318 4.19e-19 89.4
Msa0053830 MtrunA17_Chr2g0286951 26.282 312 153 11 276 544 65 342 4.58e-19 89.7
Msa0053830 MtrunA17_Chr1g0192421 33.032 221 126 8 290 488 89 309 9.71e-19 87.8
Msa0053830 MtrunA17_Chr1g0209451 30.035 283 147 10 274 545 57 299 7.80e-18 86.3
Msa0053830 MtrunA17_Chr1g0213351 29.153 295 148 11 290 543 80 354 1.14e-17 85.1
Msa0053830 MtrunA17_Chr4g0004971 28.881 277 144 9 288 535 76 328 1.23e-17 84.7
Msa0053830 MtrunA17_Chr1g0151781 29.515 227 125 8 290 488 68 287 3.37e-17 83.2
Msa0053830 MtrunA17_Chr7g0221691 30.165 242 128 8 288 488 127 368 4.26e-17 84.0
Msa0053830 MtrunA17_Chr1g0153671 29.197 274 138 10 291 548 66 299 5.68e-17 83.6
Msa0053830 MtrunA17_Chr6g0486661 23.188 345 186 13 186 491 41 345 1.49e-16 83.6
Msa0053830 MtrunA17_Chr2g0295401 30.137 219 121 8 292 483 94 307 3.43e-16 80.5
Msa0053830 MtrunA17_Chr1g0207571 30.303 297 144 15 290 543 61 337 4.25e-16 80.5
Msa0053830 MtrunA17_Chr2g0324061 28.814 236 128 7 290 488 90 322 1.25e-15 79.7
Msa0053830 MtrunA17_Chr7g0272061 30.043 233 126 8 290 488 91 320 1.40e-15 78.6
Msa0053830 MtrunA17_Chr7g0225501 30.882 204 120 8 291 483 87 280 1.56e-15 79.0
Msa0053830 MtrunA17_Chr7g0271971 29.520 271 135 10 291 545 69 299 1.87e-15 78.6
Msa0053830 MtrunA17_Chr7g0249421 29.119 261 129 9 280 488 87 343 2.37e-15 79.0
Msa0053830 MtrunA17_Chr4g0022171 27.869 244 135 6 283 488 89 329 2.89e-15 78.6
Msa0053830 MtrunA17_Chr1g0192471 30.712 267 137 10 291 545 69 299 4.57e-15 77.4
Msa0053830 MtrunA17_Chr3g0089721 27.458 295 157 11 290 543 68 346 8.29e-15 76.3
Msa0053830 MtrunA17_Chr7g0238501 25.685 292 173 10 290 544 263 547 1.69e-14 76.3
Msa0053830 MtrunA17_Chr3g0089711 27.148 291 163 10 290 543 68 346 2.61e-14 74.7
Msa0053830 MtrunA17_Chr7g0263281 29.958 237 111 11 285 483 67 286 3.53e-14 74.3
Msa0053830 MtrunA17_Chr8g0371321 26.337 243 117 6 290 490 79 301 9.99e-14 73.2
Msa0053830 MtrunA17_Chr1g0181901 28.452 239 122 10 285 488 72 296 1.16e-13 73.2
Msa0053830 MtrunA17_Chr4g0063111 30.435 230 115 9 290 488 74 289 3.15e-13 72.4
Msa0053830 MtrunA17_Chr1g0211251 26.471 238 123 8 290 490 81 303 5.20e-13 70.9
Msa0053830 MtrunA17_Chr7g0256751 26.778 239 121 10 290 490 69 291 1.69e-12 69.7
Msa0053830 MtrunA17_Chr2g0294291 25.086 291 166 10 290 543 75 350 3.55e-12 68.2
Msa0053830 MtrunA17_Chr1g0175381 26.246 301 164 13 290 551 79 360 9.18e-12 67.0
Msa0053830 MtrunA17_Chr4g0068971 31.757 148 75 5 408 549 110 237 1.26e-11 65.5
Msa0053830 MtrunA17_Chr3g0089691 30.093 216 107 8 367 543 50 260 5.28e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053830 AT1G72770.4 56.193 436 162 5 131 553 92 511 5.44e-163 474
Msa0053830 AT1G72770.1 56.193 436 162 5 131 553 92 511 5.44e-163 474
Msa0053830 AT1G72770.3 56.193 436 162 5 131 553 92 511 5.44e-163 474
Msa0053830 AT1G17550.1 47.173 566 231 11 1 553 1 511 5.71e-159 463
Msa0053830 AT1G17550.2 47.173 566 231 11 1 553 1 511 5.71e-159 463
Msa0053830 AT5G57050.1 66.964 336 94 6 224 553 97 421 3.38e-156 453
Msa0053830 AT5G57050.2 66.964 336 94 6 224 553 57 381 3.63e-156 451
Msa0053830 AT4G26080.1 65.476 336 92 6 224 552 113 431 7.22e-149 435
Msa0053830 AT1G72770.2 51.534 326 129 5 131 443 92 401 9.56e-98 303
Msa0053830 AT1G72770.5 51.534 326 129 5 131 443 92 401 9.56e-98 303
Msa0053830 AT5G57050.3 62.667 225 71 5 224 447 97 309 1.21e-91 284
Msa0053830 AT1G07430.1 41.667 360 139 7 229 548 110 438 2.97e-78 253
Msa0053830 AT2G29380.1 46.082 319 129 9 237 544 75 361 7.14e-78 250
Msa0053830 AT3G11410.1 44.231 312 120 7 197 490 68 343 6.94e-72 235
Msa0053830 AT5G51760.2 41.641 329 157 5 233 544 72 382 7.12e-68 224
Msa0053830 AT5G51760.1 41.641 329 157 5 233 544 102 412 1.54e-67 224
Msa0053830 AT5G59220.1 43.161 329 140 8 189 501 55 352 1.08e-66 222
Msa0053830 AT5G59220.2 40.959 271 115 7 189 443 55 296 7.71e-47 166
Msa0053830 AT5G24940.1 35.974 303 134 9 240 541 34 277 3.67e-45 166
Msa0053830 AT5G10740.1 35.430 302 137 7 240 541 34 277 7.16e-45 162
Msa0053830 AT5G10740.2 35.430 302 137 7 240 541 34 277 7.16e-45 162
Msa0053830 AT4G31750.2 35.099 302 138 7 240 541 34 277 7.23e-45 161
Msa0053830 AT4G31750.1 35.099 302 138 7 240 541 34 277 7.77e-45 161
Msa0053830 AT4G31750.3 35.099 302 138 7 240 541 34 277 7.77e-45 161
Msa0053830 AT5G53140.1 36.066 305 135 9 241 544 103 348 8.12e-45 164
Msa0053830 AT5G53140.2 36.066 305 135 9 241 544 103 348 8.12e-45 164
Msa0053830 AT1G43900.1 34.628 309 135 9 240 544 124 369 3.18e-41 153
Msa0053830 AT1G67820.2 32.222 360 148 11 240 543 85 404 1.71e-39 149
Msa0053830 AT1G67820.1 32.222 360 148 11 240 543 121 440 4.53e-39 149
Msa0053830 AT2G40180.1 37.109 256 130 7 290 544 161 386 2.10e-37 142
Msa0053830 AT1G07160.1 33.550 307 148 7 241 543 122 376 6.14e-35 135
Msa0053830 AT2G30020.1 34.416 308 145 10 241 544 139 393 9.34e-35 135
Msa0053830 AT2G33700.1 33.588 262 130 8 290 545 123 346 2.87e-32 128
Msa0053830 AT3G17250.1 31.136 273 146 8 290 548 158 402 8.34e-32 127
Msa0053830 AT2G25620.1 30.449 312 156 10 247 546 97 359 7.00e-31 124
Msa0053830 AT2G25620.2 30.449 312 156 10 247 546 97 359 7.00e-31 124
Msa0053830 AT3G51470.2 31.939 263 135 8 290 546 62 286 7.14e-31 122
Msa0053830 AT2G40860.4 30.255 314 153 10 241 545 296 552 8.62e-31 126
Msa0053830 AT3G51470.1 31.939 263 135 8 290 546 106 330 1.14e-30 123
Msa0053830 AT1G48040.1 32.727 275 141 9 290 548 116 362 1.16e-30 124
Msa0053830 AT2G40860.1 29.936 314 154 9 241 545 394 650 1.77e-30 126
Msa0053830 AT3G62260.3 31.179 263 148 7 285 541 22 257 2.69e-29 117
Msa0053830 AT1G22280.3 32.950 261 131 8 290 544 65 287 8.62e-29 116
Msa0053830 AT3G62260.2 31.179 263 148 7 285 541 112 347 8.77e-29 118
Msa0053830 AT3G62260.1 31.179 263 148 7 285 541 111 346 8.89e-29 118
Msa0053830 AT2G34740.1 34.866 261 118 10 290 543 119 334 1.38e-28 117
Msa0053830 AT1G78200.5 33.721 258 130 7 290 544 19 238 1.74e-27 111
Msa0053830 AT1G78200.4 33.721 258 130 7 290 544 19 238 1.74e-27 111
Msa0053830 AT1G34750.2 33.333 258 128 8 290 544 66 282 3.94e-27 111
Msa0053830 AT1G34750.1 33.333 258 128 8 290 544 66 282 3.94e-27 111
Msa0053830 AT1G34750.3 33.333 258 128 8 290 544 66 282 3.94e-27 111
Msa0053830 AT1G22280.1 32.946 258 129 8 290 544 65 281 7.92e-27 110
Msa0053830 AT1G78200.1 33.721 258 130 7 290 544 64 283 9.27e-27 110
Msa0053830 AT1G78200.3 33.721 258 130 7 290 544 64 283 9.27e-27 110
Msa0053830 AT1G78200.2 33.721 258 130 7 290 544 64 283 9.27e-27 110
Msa0053830 AT2G40860.2 29.771 262 138 7 241 493 394 618 2.07e-26 114
Msa0053830 AT2G25070.1 31.633 294 135 13 240 493 24 291 7.17e-26 109
Msa0053830 AT2G25070.2 31.633 294 135 13 240 493 24 291 7.17e-26 109
Msa0053830 AT2G20630.1 32.950 261 125 9 290 544 63 279 1.52e-25 106
Msa0053830 AT2G20630.2 33.074 257 122 9 290 540 63 275 1.05e-24 104
Msa0053830 AT4G31860.3 29.932 294 140 11 240 493 24 291 4.03e-24 103
Msa0053830 AT4G31860.1 29.932 294 140 11 240 493 24 291 6.94e-24 103
Msa0053830 AT3G15260.2 31.783 258 132 7 290 544 73 289 7.46e-24 102
Msa0053830 AT3G15260.1 31.783 258 132 7 290 544 73 289 7.46e-24 102
Msa0053830 AT3G63340.12 35.242 227 84 8 368 544 233 446 1.36e-23 105
Msa0053830 AT4G28400.1 29.430 316 157 13 245 543 16 282 2.65e-23 100
Msa0053830 AT4G28400.3 32.075 265 120 11 290 543 45 260 2.74e-23 99.8
Msa0053830 AT3G63340.11 35.242 227 84 8 368 544 233 446 3.95e-23 104
Msa0053830 AT3G63340.6 35.242 227 84 8 368 544 233 446 4.15e-23 104
Msa0053830 AT3G63340.3 35.242 227 84 8 368 544 233 446 4.15e-23 104
Msa0053830 AT3G63340.10 35.242 227 84 8 368 544 233 446 4.15e-23 104
Msa0053830 AT3G63340.4 35.242 227 84 8 368 544 233 446 4.15e-23 104
Msa0053830 AT3G63340.7 35.242 227 84 8 368 544 233 446 5.07e-23 104
Msa0053830 AT3G63340.8 35.242 227 84 8 368 544 233 446 5.16e-23 104
Msa0053830 AT3G63340.5 35.242 227 84 8 368 544 233 446 5.53e-23 104
Msa0053830 AT3G63340.1 35.242 227 84 8 368 544 233 446 5.53e-23 104
Msa0053830 AT3G63320.1 28.221 326 146 12 292 544 71 381 1.53e-22 100
Msa0053830 AT3G63320.2 33.921 227 87 8 368 544 85 298 3.28e-22 99.0
Msa0053830 AT3G06270.1 26.460 291 145 7 289 544 87 343 8.44e-22 97.4
Msa0053830 AT1G34750.4 33.663 202 109 6 290 488 66 245 1.40e-21 94.7
Msa0053830 AT3G16800.2 32.127 221 126 7 290 490 93 309 1.07e-20 94.4
Msa0053830 AT3G16800.1 32.127 221 126 7 290 490 93 309 1.07e-20 94.4
Msa0053830 AT3G16800.3 32.127 221 126 7 290 490 93 309 1.07e-20 94.4
Msa0053830 AT4G27800.1 27.557 352 166 14 237 551 56 355 1.40e-20 94.4
Msa0053830 AT2G34740.3 36.318 201 97 9 290 483 115 291 2.00e-20 92.4
Msa0053830 AT2G34740.2 36.318 201 97 9 290 483 133 309 2.00e-20 92.8
Msa0053830 AT4G31860.2 30.216 278 128 11 240 477 24 275 3.01e-20 91.3
Msa0053830 AT3G16800.4 28.676 272 158 9 293 545 1 255 4.34e-20 90.5
Msa0053830 AT3G16800.6 28.676 272 158 9 293 545 1 255 4.34e-20 90.5
Msa0053830 AT1G09160.2 30.877 285 144 11 273 545 56 299 1.22e-19 92.0
Msa0053830 AT1G09160.1 30.877 285 144 11 273 545 56 299 1.22e-19 92.0
Msa0053830 AT4G08260.1 31.373 255 109 10 291 544 20 209 1.34e-19 87.8
Msa0053830 AT5G26010.1 32.889 225 114 9 288 488 71 282 1.90e-19 90.1
Msa0053830 AT3G63340.2 41.333 150 68 6 402 544 343 479 6.86e-19 91.3
Msa0053830 AT5G02760.1 30.603 232 115 7 290 488 72 290 1.33e-18 88.2
Msa0053830 AT1G68410.4 28.720 289 153 10 274 550 62 309 2.52e-18 88.2
Msa0053830 AT1G68410.3 28.720 289 153 10 274 550 62 309 2.52e-18 88.2
Msa0053830 AT1G68410.1 28.720 289 153 10 274 550 62 309 2.52e-18 88.2
Msa0053830 AT1G68410.2 28.720 289 153 10 274 550 62 309 2.52e-18 88.2
Msa0053830 AT4G28400.2 29.150 247 140 9 245 479 16 239 5.73e-18 84.3
Msa0053830 AT4G03415.1 29.388 245 131 6 283 488 90 331 1.47e-17 85.9
Msa0053830 AT4G03415.3 29.388 245 131 6 283 488 90 331 1.47e-17 85.9
Msa0053830 AT4G03415.2 29.388 245 131 6 283 488 90 331 1.47e-17 85.9
Msa0053830 AT1G17545.1 37.333 150 41 5 262 407 78 178 1.51e-17 81.3
Msa0053830 AT2G40860.3 27.197 239 128 7 241 470 394 595 1.70e-17 86.3
Msa0053830 AT5G01700.1 31.674 221 125 8 288 485 27 244 7.23e-17 82.4
Msa0053830 AT1G47380.1 28.881 277 135 11 291 548 65 298 1.57e-16 82.4
Msa0053830 AT5G01700.2 31.674 221 125 8 288 485 76 293 1.97e-16 81.6
Msa0053830 AT4G38520.2 26.804 291 156 11 290 541 81 353 2.33e-16 81.6
Msa0053830 AT4G38520.1 26.804 291 156 11 290 541 81 353 2.33e-16 81.6
Msa0053830 AT4G32950.1 29.137 278 144 10 292 547 74 320 2.69e-16 80.5
Msa0053830 AT5G27930.1 31.556 225 125 8 290 488 92 313 4.07e-16 80.9
Msa0053830 AT5G27930.2 31.556 225 125 8 290 488 92 313 4.07e-16 80.9
Msa0053830 AT4G27800.2 27.211 294 143 11 237 493 56 315 5.51e-16 79.7
Msa0053830 AT1G16220.1 29.084 251 135 11 280 488 86 335 6.06e-16 81.3
Msa0053830 AT4G27800.3 27.211 294 143 11 237 493 56 315 6.72e-16 79.3
Msa0053830 AT3G12620.2 27.000 300 157 11 285 543 79 357 7.43e-16 80.1
Msa0053830 AT3G12620.1 27.000 300 157 11 285 543 79 357 7.43e-16 80.1
Msa0053830 AT1G03590.1 29.339 242 132 7 283 488 83 321 1.55e-15 79.7
Msa0053830 AT3G55050.1 26.510 298 161 10 285 543 80 358 2.51e-15 78.6
Msa0053830 AT3G55050.2 26.510 298 161 10 285 543 80 358 2.51e-15 78.6
Msa0053830 AT5G36250.1 35.714 140 74 4 368 491 207 346 7.37e-15 77.4
Msa0053830 AT1G79630.2 28.044 271 132 11 280 488 19 288 8.57e-15 77.0
Msa0053830 AT1G79630.7 28.044 271 132 11 280 488 19 288 8.57e-15 77.0
Msa0053830 AT3G05640.2 31.532 222 123 8 290 488 93 308 1.00e-14 76.3
Msa0053830 AT3G05640.1 31.532 222 123 8 290 488 93 308 1.00e-14 76.3
Msa0053830 AT3G05640.3 31.532 222 123 8 290 488 93 308 1.00e-14 76.3
Msa0053830 AT4G33920.1 26.144 306 166 11 280 543 51 338 1.32e-14 76.3
Msa0053830 AT1G79630.1 28.044 271 132 11 280 488 89 358 1.49e-14 76.6
Msa0053830 AT1G79630.8 28.044 271 132 11 280 488 85 354 1.63e-14 76.6
Msa0053830 AT3G27140.1 27.757 263 104 6 290 551 19 196 3.57e-14 72.8
Msa0053830 AT1G79630.6 35.036 137 73 3 368 488 112 248 9.40e-14 73.6
Msa0053830 AT1G79630.3 35.036 137 73 3 368 488 112 248 9.40e-14 73.6
Msa0053830 AT1G79630.4 35.036 137 73 3 368 488 112 248 9.40e-14 73.6
Msa0053830 AT1G79630.5 35.036 137 73 3 368 488 112 248 9.40e-14 73.6
Msa0053830 AT3G02750.2 37.313 134 68 4 368 485 216 349 1.30e-13 73.9
Msa0053830 AT3G02750.1 37.313 134 68 4 368 485 216 349 1.30e-13 73.9
Msa0053830 AT5G06750.3 27.500 240 123 8 290 491 82 308 7.48e-13 70.9
Msa0053830 AT5G06750.1 27.500 240 123 8 290 491 82 308 7.48e-13 70.9
Msa0053830 AT4G33920.2 26.939 245 132 8 341 543 16 255 6.15e-11 63.9
Msa0053830 AT2G05050.1 33.333 138 67 4 416 544 69 190 7.20e-11 62.0
Msa0053830 AT4G33920.3 28.111 217 112 6 366 543 14 225 8.34e-11 63.2

Find 180 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTCTTTGCTTCCTTTC+TGG 0.045002 1_2:-8329700 None:intergenic
GCAACTGCGTCTTCCATTTC+TGG 0.094152 1_2:-8326649 None:intergenic
GAATCATCATCCTCACTTTC+TGG 0.164991 1_2:-8326226 None:intergenic
TTTCACCAATTGTTTCTTAA+AGG 0.174144 1_2:+8327006 Msa0053830:CDS
AATTGGATTATACCCCATTA+TGG 0.180255 1_2:+8326599 Msa0053830:CDS
GCAGTGGAGCCAACAGTTTC+TGG 0.231039 1_2:-8327073 None:intergenic
TAAATTTAGTTGCTTATTCT+AGG 0.234326 1_2:+8329956 Msa0053830:three_prime_UTR
TCATAATAAGGGTGGCAATT+TGG 0.241063 1_2:+8326081 Msa0053830:CDS
CTCGAAAACGTATACTTCTT+TGG 0.264509 1_2:+8329582 Msa0053830:CDS
GTTGCTCACACCGCTGATTT+GGG 0.265336 1_2:+8326415 Msa0053830:CDS
TTCGGACGATTGTCATAATA+AGG 0.265496 1_2:+8326069 Msa0053830:CDS
TGTTGCTCACACCGCTGATT+TGG 0.282659 1_2:+8326414 Msa0053830:CDS
CCGCAAATGACCCATTTCTT+TGG 0.291037 1_2:+8326754 Msa0053830:CDS
AGAGGATGAATGTCTCATTT+TGG 0.293893 1_2:+8329508 Msa0053830:CDS
ATTCCCATTCAGATGCTAAT+TGG 0.295899 1_2:+8326694 Msa0053830:CDS
TTTCCTCGGTCAATGCAATA+TGG 0.311399 1_2:-8326913 None:intergenic
CACCGTTGACAAACAAAATT+AGG 0.314546 1_2:+8325123 Msa0053830:five_prime_UTR
CGAGGAATGAATTGAACTTC+TGG 0.323228 1_2:-8329479 None:intergenic
TGGAATGGCCATCGTGTATT+TGG 0.332051 1_2:+8327347 Msa0053830:CDS
TTCTTGCATATTCATCTTCT+CGG 0.337117 1_2:-8327295 None:intergenic
TATTTATTGAAATTGAAGTT+TGG 0.337417 1_2:+8325624 Msa0053830:five_prime_UTR
GGTAAGTGGGTGTTTAGAAT+TGG 0.340891 1_2:-8324825 None:intergenic
TTTGAAACCGTCAATTATTC+CGG 0.343631 1_2:+8329454 Msa0053830:CDS
CTTGCAATGTCAAGATCTAT+TGG 0.345690 1_2:+8327374 Msa0053830:CDS
GTGATATGAATCCCCATAAT+GGG 0.351275 1_2:-8326612 None:intergenic
TCTGCTGCTGCTTGTGCTGC+AGG 0.357440 1_2:-8329656 None:intergenic
AGTGATATGAATCCCCATAA+TGG 0.362495 1_2:-8326613 None:intergenic
TTGCTTATTCTAGGAATGAT+AGG 0.368594 1_2:+8329965 Msa0053830:three_prime_UTR
GAGCAACTGTAGAAGGCTTT+AGG 0.372631 1_2:-8326522 None:intergenic
CATCATAGACTCCAAAGAAA+TGG 0.377707 1_2:-8326765 None:intergenic
ATTGGATTATACCCCATTAT+GGG 0.378212 1_2:+8326600 Msa0053830:CDS
AATCATCATCCTCACTTTCT+GGG 0.380381 1_2:-8326225 None:intergenic
TCTGATTCAACTCCAATCTC+TGG 0.385927 1_2:-8326499 None:intergenic
AGCTGATGAGCAACTGTAGA+AGG 0.391208 1_2:-8326529 None:intergenic
AACAAAACATGATGATTTCA+AGG 0.402769 1_2:+8329767 Msa0053830:exon
GGATGATGATTCATTATCAT+TGG 0.403575 1_2:+8326237 Msa0053830:CDS
TCATTTGCGGCCTAAAACAC+CGG 0.408501 1_2:-8326741 None:intergenic
TTGTCCTATAGGGTCTCCTT+AGG 0.412982 1_2:+8325740 Msa0053830:five_prime_UTR
TCAACTATAGAGACAACAAT+TGG 0.413133 1_2:-8325529 None:intergenic
GCATATTCATCTTCTCGGTT+CGG 0.417201 1_2:-8327290 None:intergenic
GGAAGGAGAAAGTCCTTTGA+TGG 0.419922 1_2:+8326150 Msa0053830:CDS
CATTCCTAAGGAGACCCTAT+AGG 0.420020 1_2:-8325744 None:intergenic
GGCAATTTGGATGTTGAAAT+CGG 0.424234 1_2:+8326094 Msa0053830:CDS
TCTGATAATACTTCAGAAGT+TGG 0.425515 1_2:+8326343 Msa0053830:CDS
GGAAACCTTAGCTACAGAAT+TGG 0.426314 1_2:-8326029 None:intergenic
CATTTCTTTGGAGTCTATGA+TGG 0.430905 1_2:+8326766 Msa0053830:CDS
ATCAACCTTTAAGAAACAAT+TGG 0.433425 1_2:-8327011 None:intergenic
GTTGTCTCTATAGTTGATAA+AGG 0.434512 1_2:+8325535 Msa0053830:five_prime_UTR
GTGAATCTTGACCCAGAGAT+TGG 0.434954 1_2:+8326487 Msa0053830:CDS
TATGTTGCAAAAGTGAGGTT+TGG 0.435759 1_2:+8330177 Msa0053830:three_prime_UTR
CAACGAAACTGTTGTAGGTT+CGG 0.440145 1_2:+8326051 Msa0053830:CDS
ATCTGCCATCAGCTTAAATC+TGG 0.441477 1_2:-8325993 None:intergenic
AAAAGGATCTTAAAATAAGA+AGG 0.442926 1_2:-8325778 None:intergenic
TGATGGCCATGGTGGCTCTC+AGG 0.443960 1_2:+8326783 Msa0053830:CDS
ATGTGGACGAAGACCAGAAA+TGG 0.445581 1_2:+8326636 Msa0053830:CDS
GGAGAGTTGTGAGAAGAAGT+TGG 0.445998 1_2:+8325566 Msa0053830:five_prime_UTR
AAAAGTCACTCAACCGGTAT+TGG 0.448529 1_2:+8326123 Msa0053830:CDS
TTAAAGGTTGATGCAGAAGT+TGG 0.451892 1_2:+8327022 Msa0053830:CDS
AGATGTAACTAATTTGTAAG+TGG 0.456104 1_2:+8330093 Msa0053830:three_prime_UTR
ATTCATTCCTCGTGCGAAAG+AGG 0.459888 1_2:+8329490 Msa0053830:CDS
ATGAATTGAACTTCTGGATC+CGG 0.468005 1_2:-8329473 None:intergenic
CTGATAATACTTCAGAAGTT+GGG 0.471233 1_2:+8326344 Msa0053830:CDS
TCTCCTTCCTTTACCAATAC+CGG 0.472666 1_2:-8326136 None:intergenic
AATGGAGGTGTTGTTGTATG+TGG 0.474679 1_2:+8325901 Msa0053830:exon
TCATCAGCTGCCTCAGGAAG+AGG 0.476248 1_2:+8326543 Msa0053830:CDS
AAGTTAACCTCCCACCCCTT+TGG 0.477491 1_2:-8325853 None:intergenic
TTTGTCAACGGTGTAGGGTC+TGG 0.477798 1_2:-8325113 None:intergenic
TGAGAGAGACTAAATATAGT+TGG 0.478260 1_2:+8325075 Msa0053830:five_prime_UTR
TTTAAGCTGATGGCAGATGC+AGG 0.478440 1_2:+8325998 Msa0053830:CDS
ATCACCAATTAGCATCTGAA+TGG 0.480260 1_2:-8326698 None:intergenic
ATTGTCCAATTCTGTAGCTA+AGG 0.487066 1_2:+8326024 Msa0053830:CDS
GTTTCCAACGAAACTGTTGT+AGG 0.489820 1_2:+8326046 Msa0053830:CDS
ATCATAGACTCCAAAGAAAT+GGG 0.490546 1_2:-8326764 None:intergenic
CACTCAACCGGTATTGGTAA+AGG 0.490791 1_2:+8326129 Msa0053830:CDS
CAACATAATTGAAAGGGAGA+TGG 0.494861 1_2:-8330161 None:intergenic
CCAAAGAAATGGGTCATTTG+CGG 0.495267 1_2:-8326754 None:intergenic
GTCAGTGAAAACAGTAGTAT+AGG 0.500348 1_2:+8326301 Msa0053830:CDS
AAGGTTGATGCAGAAGTTGG+AGG 0.502623 1_2:+8327025 Msa0053830:CDS
AAACACCGGTTTATTCCATC+AGG 0.504331 1_2:-8326727 None:intergenic
TTTGGCTAGTGATGGTCTAT+GGG 0.504817 1_2:+8329526 Msa0053830:CDS
AGTTGCTCATCAGCTGCCTC+AGG 0.504892 1_2:+8326537 Msa0053830:CDS
TTGCTCACACCGCTGATTTG+GGG 0.507921 1_2:+8326416 Msa0053830:CDS
AAACGAAGAGGTGTGTGATC+TGG 0.509657 1_2:+8329559 Msa0053830:CDS
TCTGGATCCGGAATAATTGA+CGG 0.509776 1_2:-8329461 None:intergenic
ACTACCCTCGGAAAGGGGAG+AGG 0.509832 1_2:+8329625 Msa0053830:CDS
ATACCTGAGTGATGTCTTGA+TGG 0.511140 1_2:-8324847 None:intergenic
CATGGAACTACCCTCGGAAA+GGG 0.512080 1_2:+8329619 Msa0053830:CDS
TATTACAAAAGTCACTCAAC+CGG 0.514290 1_2:+8326117 Msa0053830:CDS
CCTCACAGAGCCTTTGTACT+CGG 0.514596 1_2:-8330032 None:intergenic
TCACCAATTAGCATCTGAAT+GGG 0.516982 1_2:-8326697 None:intergenic
TGATGTCTTGATGGGTAAGT+GGG 0.518056 1_2:-8324838 None:intergenic
GGTGTTGTTGTATGTGGTTA+CGG 0.519900 1_2:+8325907 Msa0053830:CDS
TGTCTAGCTAGGGATTTCAA+TGG 0.521186 1_2:+8325883 Msa0053830:exon
TCAACGGTGTAGGGTCTGGT+TGG 0.523225 1_2:-8325109 None:intergenic
TCAGATCTGCTCAACAATAA+CGG 0.524626 1_2:-8325649 None:intergenic
TTCTTTGCCACGACAAAGAA+CGG 0.525190 1_2:-8327155 None:intergenic
GATGATTCATTATCATTGGA+AGG 0.525235 1_2:+8326241 Msa0053830:CDS
TCTCCTTCACTGTAGTGCAT+TGG 0.527602 1_2:+8329920 Msa0053830:three_prime_UTR
TCGAATCGCGCTCTCCAGAA+AGG 0.530906 1_2:+8329686 Msa0053830:CDS
CGAACCTACAACAGTTTCGT+TGG 0.535696 1_2:-8326050 None:intergenic
TCGAGAGCCGTTCTTTGTCG+TGG 0.537353 1_2:+8327148 Msa0053830:CDS
TCGGACGATTGTCATAATAA+GGG 0.538946 1_2:+8326070 Msa0053830:CDS
GAACGAGTGTAACAGTTGTC+CGG 0.539242 1_2:+8326566 Msa0053830:CDS
TTTGGAGTCTATGATGGCCA+TGG 0.539364 1_2:+8326772 Msa0053830:CDS
CTATAGGGTCTCCTTAGGAA+TGG 0.539724 1_2:+8325745 Msa0053830:five_prime_UTR
TCAATTAGTTGAAACATGAA+AGG 0.540711 1_2:+8325820 Msa0053830:five_prime_UTR
CTACCCTCGGAAAGGGGAGA+GGG 0.541861 1_2:+8329626 Msa0053830:CDS
CTGATTCAACTCCAATCTCT+GGG 0.546780 1_2:-8326498 None:intergenic
ACGCAGTTGCAACTGTTCCT+CGG 0.546920 1_2:+8326662 Msa0053830:CDS
ATCGATGGAGGTCTCAAAGA+TGG 0.546981 1_2:+8326959 Msa0053830:CDS
TGGTCCACTGATAACGCCAT+TGG 0.547435 1_2:-8327178 None:intergenic
CATCAGCTGCCTCAGGAAGA+GGG 0.548267 1_2:+8326544 Msa0053830:CDS
CTAAATATAGTTGGAAGTGA+AGG 0.553507 1_2:+8325084 Msa0053830:five_prime_UTR
ATTGGTGATCGAGTACCTGA+TGG 0.554508 1_2:+8326712 Msa0053830:CDS
GAGTACCTGATGGAATAAAC+CGG 0.557358 1_2:+8326722 Msa0053830:CDS
TCAATTATGTTGCAAAAGTG+AGG 0.557438 1_2:+8330172 Msa0053830:three_prime_UTR
GGTGTTTAGAATTGGAAGCA+AGG 0.557598 1_2:-8324817 None:intergenic
CTCAATCATAGCTACACACA+TGG 0.557755 1_2:+8325964 Msa0053830:CDS
GTGATGTCTTGATGGGTAAG+TGG 0.558970 1_2:-8324839 None:intergenic
CGAGGAAATAAAACTTGTCA+AGG 0.560205 1_2:+8326928 Msa0053830:CDS
AAAGGATCTTAAAATAAGAA+GGG 0.567307 1_2:-8325777 None:intergenic
TGGGATATCATATCCATCAA+AGG 0.572598 1_2:-8326163 None:intergenic
CATTCATCCTCTTTCGCACG+AGG 0.572975 1_2:-8329497 None:intergenic
TTCTCTATGTCTATCGAACA+TGG 0.573710 1_2:-8326370 None:intergenic
TTGGATTATACCCCATTATG+GGG 0.575592 1_2:+8326601 Msa0053830:CDS
TTGTCGTGGCAAAGAACCAA+TGG 0.576382 1_2:+8327162 Msa0053830:CDS
CAAGATTCACTGCCACAGCA+AGG 0.577058 1_2:-8326474 None:intergenic
TTGTTCTTATACTTTCGTTG+AGG 0.577678 1_2:-8329749 None:intergenic
AAGATTCACTGCCACAGCAA+GGG 0.578634 1_2:-8326473 None:intergenic
ACTACCCTCTCCCCTTTCCG+AGG 0.579476 1_2:-8329630 None:intergenic
AAGATGGTTGCCAAGATCAG+TGG 0.579539 1_2:+8326975 Msa0053830:CDS
AGTACAGAGGATGAATGCCC+TGG 0.580491 1_2:-8329861 None:intergenic
TATGCAAGAATTGAAGCAGC+CGG 0.584084 1_2:+8327308 Msa0053830:CDS
TGCTCACACCGCTGATTTGG+GGG 0.585335 1_2:+8326417 Msa0053830:CDS
CTAGCTAGGGATTTCAATGG+AGG 0.591613 1_2:+8325886 Msa0053830:exon
AGATTCACTGCCACAGCAAG+GGG 0.592961 1_2:-8326472 None:intergenic
GCATGGAACTACCCTCGGAA+AGG 0.594104 1_2:+8329618 Msa0053830:CDS
AAACGGCATGGAACTACCCT+CGG 0.595649 1_2:+8329613 Msa0053830:CDS
AGAACCAATGGCGTTATCAG+TGG 0.595715 1_2:+8327174 Msa0053830:CDS
AATCCAATGCACTACAGTGA+AGG 0.601510 1_2:-8329923 None:intergenic
GTCAAGGAAAGTCTAATCGA+TGG 0.602817 1_2:+8326944 Msa0053830:CDS
TATAAGAGCAACAACAGCAG+TGG 0.605251 1_2:-8327089 None:intergenic
AGTGAAAACAGTAGTATAGG+TGG 0.606908 1_2:+8326304 Msa0053830:CDS
TGTGATACCAAAGGGGTGGG+AGG 0.608389 1_2:+8325846 Msa0053830:five_prime_UTR
TGTATCCAGATTTAAGCTGA+TGG 0.613837 1_2:+8325988 Msa0053830:CDS
GTTACGGTGTCAATAAGAGT+AGG 0.615266 1_2:+8325923 Msa0053830:CDS
ATGGAACTACCCTCGGAAAG+GGG 0.615281 1_2:+8329620 Msa0053830:CDS
TACTATAATACATCTTACAT+AGG 0.617454 1_2:+8329880 Msa0053830:three_prime_UTR
TTACATCTTTATAAACACAC+TGG 0.617919 1_2:-8330078 None:intergenic
CAACCGGTATTGGTAAAGGA+AGG 0.622193 1_2:+8326133 Msa0053830:CDS
CTACCCTCTCCCCTTTCCGA+GGG 0.624958 1_2:-8329629 None:intergenic
CAACATCACTGTGATTGTTG+TGG 0.626755 1_2:+8329718 Msa0053830:CDS
ATCATCATCCTCACTTTCTG+GGG 0.630351 1_2:-8326224 None:intergenic
GGAAAAGTGATACAGTGGAA+TGG 0.631701 1_2:+8327332 Msa0053830:CDS
GAAGAAGTTGGTTATGCTTG+TGG 0.633912 1_2:+8325578 Msa0053830:five_prime_UTR
ACACTCGTTCCCTCTTCCTG+AGG 0.634544 1_2:-8326553 None:intergenic
ACGATTAGCCCCAGAAAGTG+AGG 0.636780 1_2:+8326216 Msa0053830:CDS
AGTTTACCTGAGAGCCACCA+TGG 0.637746 1_2:-8326789 None:intergenic
TGGGGATTCATATCACTATG+TGG 0.637964 1_2:+8326619 Msa0053830:CDS
GGAGTCTATGATGGCCATGG+TGG 0.638051 1_2:+8326775 Msa0053830:CDS
TTAAGCTGATGGCAGATGCA+GGG 0.638908 1_2:+8325999 Msa0053830:CDS
TATTATGCCTCCGAGTACAA+AGG 0.640166 1_2:+8330022 Msa0053830:three_prime_UTR
TAAGATGTATTATAGTACAG+AGG 0.640406 1_2:-8329874 None:intergenic
GTTGTTGCGCCAGAAACTGT+TGG 0.640473 1_2:+8327064 Msa0053830:CDS
GACGATTGTCATAATAAGGG+TGG 0.641173 1_2:+8326073 Msa0053830:CDS
CCGGAGGAAAAGTGATACAG+TGG 0.650164 1_2:+8327327 Msa0053830:CDS
ATAATTGAAAGGGAGATGGA+TGG 0.650716 1_2:-8330157 None:intergenic
CACAGAGCCTTTGTACTCGG+AGG 0.655282 1_2:-8330029 None:intergenic
CATATTATAGTTGCAAACTG+TGG 0.656409 1_2:+8327121 Msa0053830:CDS
TACCTGAGTGATGTCTTGAT+GGG 0.665263 1_2:-8324846 None:intergenic
TGATATGAATCCCCATAATG+GGG 0.675948 1_2:-8326611 None:intergenic
GCAAGAATTGAAGCAGCCGG+AGG 0.679321 1_2:+8327311 Msa0053830:CDS
AAGGAAAGTCTAATCGATGG+AGG 0.680492 1_2:+8326947 Msa0053830:CDS
TATGAATGAACCCCTTGCTG+TGG 0.687921 1_2:+8326462 Msa0053830:CDS
TACCCATCAAGACATCACTC+AGG 0.689508 1_2:+8324844 Msa0053830:five_prime_UTR
TAGTTGATAAAGGTAGACAA+AGG 0.698398 1_2:+8325545 Msa0053830:five_prime_UTR
CATCCATATTGCATTGACCG+AGG 0.698699 1_2:+8326910 Msa0053830:CDS
CCGAGTACAAAGGCTCTGTG+AGG 0.707586 1_2:+8330032 Msa0053830:three_prime_UTR
CAAGAACACCAAATACACGA+TGG 0.734296 1_2:-8327355 None:intergenic
GGATGTGATGACAAACGAAG+AGG 0.744441 1_2:+8329547 Msa0053830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTTAAGATAAAATTT+AGG + chr1_2:8328066-8328085 Msa0053830:intron 10.0%
!!! GTTTAATTTTTTTATTTGAA+TGG + chr1_2:8329250-8329269 Msa0053830:intron 10.0%
!! AAAGAGACAAATTTAAAAAA+GGG - chr1_2:8325424-8325443 None:intergenic 15.0%
!! AAAAGAGACAAATTTAAAAA+AGG - chr1_2:8325425-8325444 None:intergenic 15.0%
!!! TAAATTTGTCTCTTTTTAAT+TGG + chr1_2:8325429-8325448 Msa0053830:intron 15.0%
!!! TTGTATTTTTATATGTTTTC+AGG + chr1_2:8325500-8325519 Msa0053830:intron 15.0%
!! TATTTATTGAAATTGAAGTT+TGG + chr1_2:8325624-8325643 Msa0053830:five_prime_UTR 15.0%
!!! AACTAAAACACTTTTATTTT+GGG - chr1_2:8326185-8326204 None:intergenic 15.0%
!!! ATGATAAATTTTACTTCATT+TGG + chr1_2:8327410-8327429 Msa0053830:intron 15.0%
!! AAGTTTATTCCATAAATTAT+AGG + chr1_2:8327782-8327801 Msa0053830:intron 15.0%
!! TAAAAAAATTAGGATCAAAA+TGG - chr1_2:8328685-8328704 None:intergenic 15.0%
!! TCTAAAAACTAAAAATAAAG+TGG - chr1_2:8328803-8328822 None:intergenic 15.0%
!! AAAGGATCTTAAAATAAGAA+GGG - chr1_2:8325780-8325799 None:intergenic 20.0%
!! AAAAGGATCTTAAAATAAGA+AGG - chr1_2:8325781-8325800 None:intergenic 20.0%
!!! CAACTAAAACACTTTTATTT+TGG - chr1_2:8326186-8326205 None:intergenic 20.0%
!! CATAATAAATAAGCATGTAT+CGG - chr1_2:8327509-8327528 None:intergenic 20.0%
!! ATAAACCAGTACAAAATAAT+TGG + chr1_2:8327841-8327860 Msa0053830:intron 20.0%
!!! TAATTTTTCCTCACAAAATT+CGG + chr1_2:8327875-8327894 Msa0053830:intron 20.0%
!! AATCATGTGTACTAATTTAA+GGG + chr1_2:8328460-8328479 Msa0053830:intron 20.0%
!! GTACTTTATTAAGAAATGAA+TGG + chr1_2:8328491-8328510 Msa0053830:intron 20.0%
!!! TGTTTTTCCATGTAATTAAT+TGG + chr1_2:8328528-8328547 Msa0053830:intron 20.0%
!!! TTTCAAGCTCTAAAAAAATT+AGG - chr1_2:8328695-8328714 None:intergenic 20.0%
!!! TATCTTAATATTTCTGATGA+TGG + chr1_2:8329065-8329084 Msa0053830:intron 20.0%
!! TAATTGTGTTGTGTTTATAA+AGG + chr1_2:8329383-8329402 Msa0053830:intron 20.0%
!! TACTATAATACATCTTACAT+AGG + chr1_2:8329880-8329899 Msa0053830:three_prime_UTR 20.0%
!! TAAATTTAGTTGCTTATTCT+AGG + chr1_2:8329956-8329975 Msa0053830:three_prime_UTR 20.0%
!!! TACCTAATTTTGTTTGTCAA+CGG - chr1_2:8325128-8325147 None:intergenic 25.0%
!!! AAAAGGGTTGTTATCTTTTT+TGG + chr1_2:8325294-8325313 Msa0053830:intron 25.0%
! TTTCTTGTGTTTGTAGATAA+GGG + chr1_2:8325381-8325400 Msa0053830:intron 25.0%
!!! ATTTGTCTCTTTTTAATTGG+TGG + chr1_2:8325432-8325451 Msa0053830:intron 25.0%
!!! TTTGTCTCTTTTTAATTGGT+GGG + chr1_2:8325433-8325452 Msa0053830:intron 25.0%
! TCAATTAGTTGAAACATGAA+AGG + chr1_2:8325820-8325839 Msa0053830:five_prime_UTR 25.0%
!! GAGCTTAATTTTTCTCATTT+AGG + chr1_2:8326865-8326884 Msa0053830:intron 25.0%
!! TTTCACCAATTGTTTCTTAA+AGG + chr1_2:8327006-8327025 Msa0053830:CDS 25.0%
!! ATCAACCTTTAAGAAACAAT+TGG - chr1_2:8327014-8327033 None:intergenic 25.0%
! TAAAATTACAAACTCCAACA+CGG + chr1_2:8327442-8327461 Msa0053830:intron 25.0%
!! TCTTTTAGTCAGTTATTTAG+AGG + chr1_2:8328217-8328236 Msa0053830:intron 25.0%
!! CTTTTAGTCAGTTATTTAGA+GGG + chr1_2:8328218-8328237 Msa0053830:intron 25.0%
!!! AGAGTTGTTTTTCTTGTTTT+AGG + chr1_2:8328388-8328407 Msa0053830:intron 25.0%
!!! GAGTTGTTTTTCTTGTTTTA+GGG + chr1_2:8328389-8328408 Msa0053830:intron 25.0%
! TACACATGATTGATATAAAC+TGG - chr1_2:8328451-8328470 None:intergenic 25.0%
! CAATCATGTGTACTAATTTA+AGG + chr1_2:8328459-8328478 Msa0053830:intron 25.0%
! ACGAAATCCAATTAATTACA+TGG - chr1_2:8328538-8328557 None:intergenic 25.0%
! GATGATTAATAAGCAGTAAA+TGG - chr1_2:8328638-8328657 None:intergenic 25.0%
! CTTATTAATCATCCTTGAAT+GGG + chr1_2:8328645-8328664 Msa0053830:intron 25.0%
! TTATTAATCATCCTTGAATG+GGG + chr1_2:8328646-8328665 Msa0053830:intron 25.0%
!!! AATTTAGTTTGATCATTCCT+CGG + chr1_2:8328909-8328928 Msa0053830:intron 25.0%
! AACAAAACATGATGATTTCA+AGG + chr1_2:8329767-8329786 Msa0053830:exon 25.0%
! TAAGATGTATTATAGTACAG+AGG - chr1_2:8329877-8329896 None:intergenic 25.0%
! TTACATCTTTATAAACACAC+TGG - chr1_2:8330081-8330100 None:intergenic 25.0%
!! AGATGTAACTAATTTGTAAG+TGG + chr1_2:8330093-8330112 Msa0053830:three_prime_UTR 25.0%
!! CTTTTGCAACATAATTGAAA+GGG - chr1_2:8330170-8330189 None:intergenic 25.0%
!! ACTTTTGCAACATAATTGAA+AGG - chr1_2:8330171-8330190 None:intergenic 25.0%
!! ACTGAGCTGTTTTCATTTAA+TGG + chr1_2:8324920-8324939 Msa0053830:intron 30.0%
!! CTGAGCTGTTTTCATTTAAT+GGG + chr1_2:8324921-8324940 Msa0053830:intron 30.0%
TGGGTCAAGATTATTAAGTA+AGG + chr1_2:8324940-8324959 Msa0053830:intron 30.0%
GGGTCAAGATTATTAAGTAA+GGG + chr1_2:8324941-8324960 Msa0053830:intron 30.0%
TGAGAGAGACTAAATATAGT+TGG + chr1_2:8325075-8325094 Msa0053830:five_prime_UTR 30.0%
CTAAATATAGTTGGAAGTGA+AGG + chr1_2:8325084-8325103 Msa0053830:five_prime_UTR 30.0%
!!! TTAAGACTTTGCACTTTTTC+TGG + chr1_2:8325332-8325351 Msa0053830:intron 30.0%
!!! TAAGACTTTGCACTTTTTCT+GGG + chr1_2:8325333-8325352 Msa0053830:intron 30.0%
CTTTCTTGTGTTTGTAGATA+AGG + chr1_2:8325380-8325399 Msa0053830:intron 30.0%
TTCTTGTGTTTGTAGATAAG+GGG + chr1_2:8325382-8325401 Msa0053830:intron 30.0%
!! TTGTCTCTTTTTAATTGGTG+GGG + chr1_2:8325434-8325453 Msa0053830:intron 30.0%
TCAACTATAGAGACAACAAT+TGG - chr1_2:8325532-8325551 None:intergenic 30.0%
!! GTTGTCTCTATAGTTGATAA+AGG + chr1_2:8325535-8325554 Msa0053830:five_prime_UTR 30.0%
!! TAGTTGATAAAGGTAGACAA+AGG + chr1_2:8325545-8325564 Msa0053830:five_prime_UTR 30.0%
! TTTTGCTTCTTTTGTCCTAT+AGG + chr1_2:8325729-8325748 Msa0053830:five_prime_UTR 30.0%
! TTTGCTTCTTTTGTCCTATA+GGG + chr1_2:8325730-8325749 Msa0053830:five_prime_UTR 30.0%
!! AAAGGTTTTGTGATACCAAA+GGG + chr1_2:8325838-8325857 Msa0053830:five_prime_UTR 30.0%
TATTACAAAAGTCACTCAAC+CGG + chr1_2:8326117-8326136 Msa0053830:CDS 30.0%
GGATGATGATTCATTATCAT+TGG + chr1_2:8326237-8326256 Msa0053830:CDS 30.0%
GATGATTCATTATCATTGGA+AGG + chr1_2:8326241-8326260 Msa0053830:CDS 30.0%
TCTGATAATACTTCAGAAGT+TGG + chr1_2:8326343-8326362 Msa0053830:CDS 30.0%
CTGATAATACTTCAGAAGTT+GGG + chr1_2:8326344-8326363 Msa0053830:CDS 30.0%
AATCCAATTCAAAAACACTC+CGG - chr1_2:8326588-8326607 None:intergenic 30.0%
AATTGGATTATACCCCATTA+TGG + chr1_2:8326599-8326618 Msa0053830:CDS 30.0%
ATTGGATTATACCCCATTAT+GGG + chr1_2:8326600-8326619 Msa0053830:CDS 30.0%
ATCATAGACTCCAAAGAAAT+GGG - chr1_2:8326767-8326786 None:intergenic 30.0%
!!! CTTGACAAGTTTTATTTCCT+CGG - chr1_2:8326930-8326949 None:intergenic 30.0%
!!! AAACTTTTTTCCACTGATCT+TGG - chr1_2:8326988-8327007 None:intergenic 30.0%
CATATTATAGTTGCAAACTG+TGG + chr1_2:8327121-8327140 Msa0053830:CDS 30.0%
TCTAGAAGCAACTTACTTTA+TGG - chr1_2:8327201-8327220 None:intergenic 30.0%
TTCTTGCATATTCATCTTCT+CGG - chr1_2:8327298-8327317 None:intergenic 30.0%
!! AAACACTTTTTGGACATTGA+GGG - chr1_2:8327615-8327634 None:intergenic 30.0%
!! TAAACACTTTTTGGACATTG+AGG - chr1_2:8327616-8327635 None:intergenic 30.0%
!! CAATGTCCAAAAAGTGTTTA+AGG + chr1_2:8327616-8327635 Msa0053830:intron 30.0%
AACAAAGAGAGAGAAAAAGT+TGG + chr1_2:8327647-8327666 Msa0053830:intron 30.0%
CCTCTTACACCTATAATTTA+TGG - chr1_2:8327794-8327813 None:intergenic 30.0%
CCATAAATTATAGGTGTAAG+AGG + chr1_2:8327791-8327810 Msa0053830:intron 30.0%
AAATTATAGGTGTAAGAGGT+TGG + chr1_2:8327795-8327814 Msa0053830:intron 30.0%
!! CCAAACCAATTATTTTGTAC+TGG - chr1_2:8327849-8327868 None:intergenic 30.0%
CCAGTACAAAATAATTGGTT+TGG + chr1_2:8327846-8327865 Msa0053830:intron 30.0%
ACACACTGTAAATGATTCAA+AGG + chr1_2:8328250-8328269 Msa0053830:intron 30.0%
!! GGTATCTTTAGTTCTAAAGA+GGG + chr1_2:8328285-8328304 Msa0053830:intron 30.0%
!! TAGAGGTATCTTCTATAATC+TGG + chr1_2:8328318-8328337 Msa0053830:intron 30.0%
TACACAGGATTGATATAAAC+TGG - chr1_2:8328345-8328364 None:intergenic 30.0%
TCAATCCTGTGTACTAATTT+CGG + chr1_2:8328352-8328371 Msa0053830:intron 30.0%
! ACTGATTCAGAATTTCAGAT+GGG - chr1_2:8328602-8328621 None:intergenic 30.0%
! ATCTGAAATTCTGAATCAGT+GGG + chr1_2:8328602-8328621 Msa0053830:intron 30.0%
GCTTATTAATCATCCTTGAA+TGG + chr1_2:8328644-8328663 Msa0053830:intron 30.0%
!! ATATTTGTTTTCCCCATTCA+AGG - chr1_2:8328660-8328679 None:intergenic 30.0%
! AACCTATTTTGCATTCTTCT+CGG + chr1_2:8328718-8328737 Msa0053830:intron 30.0%
ATTCGTCATTTATGTTCAAC+AGG - chr1_2:8328760-8328779 None:intergenic 30.0%
GAGGAATGATCAAACTAAAT+TGG - chr1_2:8328910-8328929 None:intergenic 30.0%
AAGGATACTGTATGAAAAGA+GGG - chr1_2:8328986-8329005 None:intergenic 30.0%
ACTTGATTCTCTTAGAACTA+CGG - chr1_2:8329227-8329246 None:intergenic 30.0%
GAATGGAAAATGCACAAAAT+AGG + chr1_2:8329267-8329286 Msa0053830:intron 30.0%
AATCAAATACACAAGCAAGT+TGG - chr1_2:8329350-8329369 None:intergenic 30.0%
AAACACAACACAATTACTGT+GGG - chr1_2:8329379-8329398 None:intergenic 30.0%
TAAACACAACACAATTACTG+TGG - chr1_2:8329380-8329399 None:intergenic 30.0%
! TTTGAAACCGTCAATTATTC+CGG + chr1_2:8329454-8329473 Msa0053830:CDS 30.0%
CTTCTTTGGTACAAGAAAAA+CGG + chr1_2:8329596-8329615 Msa0053830:CDS 30.0%
TTGTTCTTATACTTTCGTTG+AGG - chr1_2:8329752-8329771 None:intergenic 30.0%
! TTGCTTATTCTAGGAATGAT+AGG + chr1_2:8329965-8329984 Msa0053830:three_prime_UTR 30.0%
TCAATTATGTTGCAAAAGTG+AGG + chr1_2:8330172-8330191 Msa0053830:three_prime_UTR 30.0%
!!! TTTGCTTTTTCCCAATCCAT+GGG + chr1_2:8325025-8325044 Msa0053830:intron 35.0%
!! TTTTGTTTGTCAACGGTGTA+GGG - chr1_2:8325121-8325140 None:intergenic 35.0%
!! ATTTTGTTTGTCAACGGTGT+AGG - chr1_2:8325122-8325141 None:intergenic 35.0%
CACCGTTGACAAACAAAATT+AGG + chr1_2:8325123-8325142 Msa0053830:five_prime_UTR 35.0%
AGGCAACTCTATGTGAAAAA+GGG + chr1_2:8325278-8325297 Msa0053830:intron 35.0%
!!! GGGGTTTTAATTTTCTTGAG+TGG + chr1_2:8325453-8325472 Msa0053830:intron 35.0%
TCAGATCTGCTCAACAATAA+CGG - chr1_2:8325652-8325671 None:intergenic 35.0%
! GGTAACATTTTCCATTCCTA+AGG - chr1_2:8325759-8325778 None:intergenic 35.0%
! TCCTTTTCAATCAGAAAAGC+AGG + chr1_2:8325794-8325813 Msa0053830:five_prime_UTR 35.0%
!! ACCTGCTTTTCTGATTGAAA+AGG - chr1_2:8325798-8325817 None:intergenic 35.0%
!! GAAAGGTTTTGTGATACCAA+AGG + chr1_2:8325837-8325856 Msa0053830:five_prime_UTR 35.0%
!! AAGGTTTTGTGATACCAAAG+GGG + chr1_2:8325839-8325858 Msa0053830:five_prime_UTR 35.0%
! ACTTTTTGTCTTGTCTAGCT+AGG + chr1_2:8325872-8325891 Msa0053830:five_prime_UTR 35.0%
! CTTTTTGTCTTGTCTAGCTA+GGG + chr1_2:8325873-8325892 Msa0053830:five_prime_UTR 35.0%
TGTATCCAGATTTAAGCTGA+TGG + chr1_2:8325988-8326007 Msa0053830:CDS 35.0%
ATTGTCCAATTCTGTAGCTA+AGG + chr1_2:8326024-8326043 Msa0053830:CDS 35.0%
TTCGGACGATTGTCATAATA+AGG + chr1_2:8326069-8326088 Msa0053830:CDS 35.0%
TCGGACGATTGTCATAATAA+GGG + chr1_2:8326070-8326089 Msa0053830:CDS 35.0%
TCATAATAAGGGTGGCAATT+TGG + chr1_2:8326081-8326100 Msa0053830:CDS 35.0%
GGCAATTTGGATGTTGAAAT+CGG + chr1_2:8326094-8326113 Msa0053830:CDS 35.0%
TGGGATATCATATCCATCAA+AGG - chr1_2:8326166-8326185 None:intergenic 35.0%
AATCATCATCCTCACTTTCT+GGG - chr1_2:8326228-8326247 None:intergenic 35.0%
GTCAGTGAAAACAGTAGTAT+AGG + chr1_2:8326301-8326320 Msa0053830:CDS 35.0%
AGTGAAAACAGTAGTATAGG+TGG + chr1_2:8326304-8326323 Msa0053830:CDS 35.0%
TTCTCTATGTCTATCGAACA+TGG - chr1_2:8326373-8326392 None:intergenic 35.0%
TTGGATTATACCCCATTATG+GGG + chr1_2:8326601-8326620 Msa0053830:CDS 35.0%
TGATATGAATCCCCATAATG+GGG - chr1_2:8326614-8326633 None:intergenic 35.0%
GTGATATGAATCCCCATAAT+GGG - chr1_2:8326615-8326634 None:intergenic 35.0%
AGTGATATGAATCCCCATAA+TGG - chr1_2:8326616-8326635 None:intergenic 35.0%
! ATGGGAATTTCTAAAAACCG+AGG - chr1_2:8326682-8326701 None:intergenic 35.0%
ATTCCCATTCAGATGCTAAT+TGG + chr1_2:8326694-8326713 Msa0053830:CDS 35.0%
TCACCAATTAGCATCTGAAT+GGG - chr1_2:8326700-8326719 None:intergenic 35.0%
ATCACCAATTAGCATCTGAA+TGG - chr1_2:8326701-8326720 None:intergenic 35.0%
! ATGGAATAAACCGGTGTTTT+AGG + chr1_2:8326731-8326750 Msa0053830:CDS 35.0%
CATCATAGACTCCAAAGAAA+TGG - chr1_2:8326768-8326787 None:intergenic 35.0%
!! CATTTCTTTGGAGTCTATGA+TGG + chr1_2:8326766-8326785 Msa0053830:CDS 35.0%
TCAGACAAGGCTAAAATCAA+CGG - chr1_2:8326830-8326849 None:intergenic 35.0%
AGTGAGAGTTTATTCAGACA+AGG - chr1_2:8326843-8326862 None:intergenic 35.0%
CGAGGAAATAAAACTTGTCA+AGG + chr1_2:8326928-8326947 Msa0053830:CDS 35.0%
!! TTAAAGGTTGATGCAGAAGT+TGG + chr1_2:8327022-8327041 Msa0053830:CDS 35.0%
CTTGCAATGTCAAGATCTAT+TGG + chr1_2:8327374-8327393 Msa0053830:CDS 35.0%
! CCTAGATTTTCACATTAGCA+GGG - chr1_2:8327477-8327496 None:intergenic 35.0%
! TCCTAGATTTTCACATTAGC+AGG - chr1_2:8327478-8327497 None:intergenic 35.0%
!! AACACTTTTTGGACATTGAG+GGG - chr1_2:8327614-8327633 None:intergenic 35.0%
! GACACACCTTAAACACTTTT+TGG - chr1_2:8327625-8327644 None:intergenic 35.0%
GAAAGTGAGAAGAGAGAAAA+GGG - chr1_2:8327674-8327693 None:intergenic 35.0%
AGAAAGTGAGAAGAGAGAAA+AGG - chr1_2:8327675-8327694 None:intergenic 35.0%
! ATGCTAACTAAGACTTGGTT+TGG - chr1_2:8327706-8327725 None:intergenic 35.0%
TGATCATGCTAACTAAGACT+TGG - chr1_2:8327711-8327730 None:intergenic 35.0%
! GGTTTAATCCGAATTTTGTG+AGG - chr1_2:8327886-8327905 None:intergenic 35.0%
! CCAATGTTTCTTCATCGATT+TGG - chr1_2:8327907-8327926 None:intergenic 35.0%
CCAAATCGATGAAGAAACAT+TGG + chr1_2:8327904-8327923 Msa0053830:intron 35.0%
! TCGATGAAGAAACATTGGTT+TGG + chr1_2:8327909-8327928 Msa0053830:intron 35.0%
AGATAAAGACATGTGTCCTA+CGG + chr1_2:8328118-8328137 Msa0053830:intron 35.0%
ATTCAAAGGAGAGATTAGAG+CGG + chr1_2:8328264-8328283 Msa0053830:intron 35.0%
!! CGGTATCTTTAGTTCTAAAG+AGG + chr1_2:8328284-8328303 Msa0053830:intron 35.0%
!!! AAGAGGGATTTTGAGATTAG+AGG + chr1_2:8328301-8328320 Msa0053830:intron 35.0%
! GTTGTTGATTACTCAACTTC+TGG + chr1_2:8328424-8328443 Msa0053830:intron 35.0%
AATTGGATTTCGTGAATGTG+AGG + chr1_2:8328545-8328564 Msa0053830:intron 35.0%
ATTGGATTTCGTGAATGTGA+GGG + chr1_2:8328546-8328565 Msa0053830:intron 35.0%
TGGGAACATAAAGTGATTTG+CGG - chr1_2:8328583-8328602 None:intergenic 35.0%
!! CACTGATTCAGAATTTCAGA+TGG - chr1_2:8328603-8328622 None:intergenic 35.0%
! CATCTGAAATTCTGAATCAG+TGG + chr1_2:8328601-8328620 Msa0053830:intron 35.0%
AACCGAGAAGAATGCAAAAT+AGG - chr1_2:8328723-8328742 None:intergenic 35.0%
AGGATACTGTATGAAAAGAG+GGG - chr1_2:8328985-8329004 None:intergenic 35.0%
GAAGGATACTGTATGAAAAG+AGG - chr1_2:8328987-8329006 None:intergenic 35.0%
CGAAAAATGTTTAACGCAGA+AGG - chr1_2:8329005-8329024 None:intergenic 35.0%
TGGAAAAGAACACTTGTCAT+TGG + chr1_2:8329115-8329134 Msa0053830:intron 35.0%
AACCACTAGCAAATTCAGAA+TGG - chr1_2:8329148-8329167 None:intergenic 35.0%
TGAAAATCACATCAAGGGTA+AGG - chr1_2:8329423-8329442 None:intergenic 35.0%
! TTACCCTTGATGTGATTTTC+AGG + chr1_2:8329422-8329441 Msa0053830:intron 35.0%
TCTCCTGAAAATCACATCAA+GGG - chr1_2:8329428-8329447 None:intergenic 35.0%
ATGAATTGAACTTCTGGATC+CGG - chr1_2:8329476-8329495 None:intergenic 35.0%
! AGAGGATGAATGTCTCATTT+TGG + chr1_2:8329508-8329527 Msa0053830:CDS 35.0%
CTCGAAAACGTATACTTCTT+TGG + chr1_2:8329582-8329601 Msa0053830:CDS 35.0%
! TTGCCCATTAATTTTTCACC+AGG + chr1_2:8329843-8329862 Msa0053830:three_prime_UTR 35.0%
! TGCCCATTAATTTTTCACCA+GGG + chr1_2:8329844-8329863 Msa0053830:three_prime_UTR 35.0%
TGCCCTGGTGAAAAATTAAT+GGG - chr1_2:8329849-8329868 None:intergenic 35.0%
ATGCCCTGGTGAAAAATTAA+TGG - chr1_2:8329850-8329869 None:intergenic 35.0%
ATAATTGAAAGGGAGATGGA+TGG - chr1_2:8330160-8330179 None:intergenic 35.0%
CAACATAATTGAAAGGGAGA+TGG - chr1_2:8330164-8330183 None:intergenic 35.0%
TATGTTGCAAAAGTGAGGTT+TGG + chr1_2:8330177-8330196 Msa0053830:three_prime_UTR 35.0%
! GGTGTTTAGAATTGGAAGCA+AGG - chr1_2:8324820-8324839 None:intergenic 40.0%
! GGTAAGTGGGTGTTTAGAAT+TGG - chr1_2:8324828-8324847 None:intergenic 40.0%
! TGATGTCTTGATGGGTAAGT+GGG - chr1_2:8324841-8324860 None:intergenic 40.0%
TACCTGAGTGATGTCTTGAT+GGG - chr1_2:8324849-8324868 None:intergenic 40.0%
ATACCTGAGTGATGTCTTGA+TGG - chr1_2:8324850-8324869 None:intergenic 40.0%
!!! GTTTGCTTTTTCCCAATCCA+TGG + chr1_2:8325024-8325043 Msa0053830:intron 40.0%
!! CTTTTTCACATAGAGTTGCC+TGG - chr1_2:8325279-8325298 None:intergenic 40.0%
CAGGCAACTCTATGTGAAAA+AGG + chr1_2:8325277-8325296 Msa0053830:intron 40.0%
! GAAGAAGTTGGTTATGCTTG+TGG + chr1_2:8325578-8325597 Msa0053830:five_prime_UTR 40.0%
! TTTTGTGATACCAAAGGGGT+GGG + chr1_2:8325843-8325862 Msa0053830:five_prime_UTR 40.0%
TGTCTAGCTAGGGATTTCAA+TGG + chr1_2:8325883-8325902 Msa0053830:exon 40.0%
!! AATGGAGGTGTTGTTGTATG+TGG + chr1_2:8325901-8325920 Msa0053830:exon 40.0%
!! GGTGTTGTTGTATGTGGTTA+CGG + chr1_2:8325907-8325926 Msa0053830:CDS 40.0%
! GTTACGGTGTCAATAAGAGT+AGG + chr1_2:8325923-8325942 Msa0053830:CDS 40.0%
CTCAATCATAGCTACACACA+TGG + chr1_2:8325964-8325983 Msa0053830:CDS 40.0%
ATCTGCCATCAGCTTAAATC+TGG - chr1_2:8325996-8326015 None:intergenic 40.0%
GGAAACCTTAGCTACAGAAT+TGG - chr1_2:8326032-8326051 None:intergenic 40.0%
GTTTCCAACGAAACTGTTGT+AGG + chr1_2:8326046-8326065 Msa0053830:CDS 40.0%
CAACGAAACTGTTGTAGGTT+CGG + chr1_2:8326051-8326070 Msa0053830:CDS 40.0%
GACGATTGTCATAATAAGGG+TGG + chr1_2:8326073-8326092 Msa0053830:CDS 40.0%
AAAAGTCACTCAACCGGTAT+TGG + chr1_2:8326123-8326142 Msa0053830:CDS 40.0%
TCTCCTTCCTTTACCAATAC+CGG - chr1_2:8326139-8326158 None:intergenic 40.0%
ATCATCATCCTCACTTTCTG+GGG - chr1_2:8326227-8326246 None:intergenic 40.0%
GAATCATCATCCTCACTTTC+TGG - chr1_2:8326229-8326248 None:intergenic 40.0%
CTGATTCAACTCCAATCTCT+GGG - chr1_2:8326501-8326520 None:intergenic 40.0%
TCTGATTCAACTCCAATCTC+TGG - chr1_2:8326502-8326521 None:intergenic 40.0%
!! TGTCCGGAGTGTTTTTGAAT+TGG + chr1_2:8326582-8326601 Msa0053830:CDS 40.0%
TGGGGATTCATATCACTATG+TGG + chr1_2:8326619-8326638 Msa0053830:CDS 40.0%
GAGTACCTGATGGAATAAAC+CGG + chr1_2:8326722-8326741 Msa0053830:CDS 40.0%
!! AAACACCGGTTTATTCCATC+AGG - chr1_2:8326730-8326749 None:intergenic 40.0%
CCAAAGAAATGGGTCATTTG+CGG - chr1_2:8326757-8326776 None:intergenic 40.0%
TTTCCTCGGTCAATGCAATA+TGG - chr1_2:8326916-8326935 None:intergenic 40.0%
GTCAAGGAAAGTCTAATCGA+TGG + chr1_2:8326944-8326963 Msa0053830:CDS 40.0%
AAGGAAAGTCTAATCGATGG+AGG + chr1_2:8326947-8326966 Msa0053830:CDS 40.0%
TATAAGAGCAACAACAGCAG+TGG - chr1_2:8327092-8327111 None:intergenic 40.0%
TTCTTTGCCACGACAAAGAA+CGG - chr1_2:8327158-8327177 None:intergenic 40.0%
GCATATTCATCTTCTCGGTT+CGG - chr1_2:8327293-8327312 None:intergenic 40.0%
TATGCAAGAATTGAAGCAGC+CGG + chr1_2:8327308-8327327 Msa0053830:CDS 40.0%
GGAAAAGTGATACAGTGGAA+TGG + chr1_2:8327332-8327351 Msa0053830:CDS 40.0%
CAAGAACACCAAATACACGA+TGG - chr1_2:8327358-8327377 None:intergenic 40.0%
CCCTGCTAATGTGAAAATCT+AGG + chr1_2:8327474-8327493 Msa0053830:intron 40.0%
! ATAGGTGTAAGAGGTTGGTT+TGG + chr1_2:8327800-8327819 Msa0053830:intron 40.0%
!! TGTAAGAGGTTGGTTTGGTT+CGG + chr1_2:8327805-8327824 Msa0053830:intron 40.0%
GATAAAGACATGTGTCCTAC+GGG + chr1_2:8328119-8328138 Msa0053830:intron 40.0%
! ACAAACACCTCTAGGAGATT+AGG - chr1_2:8328182-8328201 None:intergenic 40.0%
ACAAAGACACAAACACCTCT+AGG - chr1_2:8328190-8328209 None:intergenic 40.0%
! GAGGTGTTTGTGTCTTTGTT+TGG + chr1_2:8328191-8328210 Msa0053830:intron 40.0%
GACTTCCGAAATTAGTACAC+AGG - chr1_2:8328360-8328379 None:intergenic 40.0%
TTGGATTTCGTGAATGTGAG+GGG + chr1_2:8328547-8328566 Msa0053830:intron 40.0%
! GGAACATAAAGTGATTTGCG+GGG - chr1_2:8328581-8328600 None:intergenic 40.0%
! GGGAACATAAAGTGATTTGC+GGG - chr1_2:8328582-8328601 None:intergenic 40.0%
AGACCAAAGATCATTGCAGA+AGG + chr1_2:8328853-8328872 Msa0053830:intron 40.0%
TTGCCTTCTGCAATGATCTT+TGG - chr1_2:8328859-8328878 None:intergenic 40.0%
TAATTTCCCTTAGCAGCCTT+TGG - chr1_2:8328942-8328961 None:intergenic 40.0%
GGATACTGTATGAAAAGAGG+GGG - chr1_2:8328984-8329003 None:intergenic 40.0%
! GCACAATGTTGAGAGTCTTT+TGG + chr1_2:8329095-8329114 Msa0053830:intron 40.0%
!! CACCATTCTGAATTTGCTAG+TGG + chr1_2:8329143-8329162 Msa0053830:intron 40.0%
GTCTCCTGAAAATCACATCA+AGG - chr1_2:8329429-8329448 None:intergenic 40.0%
TCTGGATCCGGAATAATTGA+CGG - chr1_2:8329464-8329483 None:intergenic 40.0%
CGAGGAATGAATTGAACTTC+TGG - chr1_2:8329482-8329501 None:intergenic 40.0%
!!! TGTCTCATTTTGGCTAGTGA+TGG + chr1_2:8329518-8329537 Msa0053830:CDS 40.0%
!! TTTTGGCTAGTGATGGTCTA+TGG + chr1_2:8329525-8329544 Msa0053830:CDS 40.0%
TTTGGCTAGTGATGGTCTAT+GGG + chr1_2:8329526-8329545 Msa0053830:CDS 40.0%
TTGGTACAAGAAAAACGGCA+TGG + chr1_2:8329601-8329620 Msa0053830:CDS 40.0%
TGTTGTCTTTGCTTCCTTTC+TGG - chr1_2:8329703-8329722 None:intergenic 40.0%
CAACATCACTGTGATTGTTG+TGG + chr1_2:8329718-8329737 Msa0053830:CDS 40.0%
AATCCAATGCACTACAGTGA+AGG - chr1_2:8329926-8329945 None:intergenic 40.0%
TATTATGCCTCCGAGTACAA+AGG + chr1_2:8330022-8330041 Msa0053830:three_prime_UTR 40.0%
! GTGATGTCTTGATGGGTAAG+TGG - chr1_2:8324842-8324861 None:intergenic 45.0%
TACCCATCAAGACATCACTC+AGG + chr1_2:8324844-8324863 Msa0053830:five_prime_UTR 45.0%
TTTCCCAATCCATGGGTTTC+AGG + chr1_2:8325032-8325051 Msa0053830:intron 45.0%
ACACCTGAAACCCATGGATT+GGG - chr1_2:8325038-8325057 None:intergenic 45.0%
ACATTGACACCTGAAACCCA+TGG - chr1_2:8325044-8325063 None:intergenic 45.0%
GGAGAGTTGTGAGAAGAAGT+TGG + chr1_2:8325566-8325585 Msa0053830:five_prime_UTR 45.0%
TTGTCCTATAGGGTCTCCTT+AGG + chr1_2:8325740-8325759 Msa0053830:five_prime_UTR 45.0%
CATTCCTAAGGAGACCCTAT+AGG - chr1_2:8325747-8325766 None:intergenic 45.0%
CTATAGGGTCTCCTTAGGAA+TGG + chr1_2:8325745-8325764 Msa0053830:five_prime_UTR 45.0%
! GTTTTGTGATACCAAAGGGG+TGG + chr1_2:8325842-8325861 Msa0053830:five_prime_UTR 45.0%
CTAGCTAGGGATTTCAATGG+AGG + chr1_2:8325886-8325905 Msa0053830:exon 45.0%
TTTAAGCTGATGGCAGATGC+AGG + chr1_2:8325998-8326017 Msa0053830:CDS 45.0%
TTAAGCTGATGGCAGATGCA+GGG + chr1_2:8325999-8326018 Msa0053830:CDS 45.0%
CGAACCTACAACAGTTTCGT+TGG - chr1_2:8326053-8326072 None:intergenic 45.0%
!! CACTCAACCGGTATTGGTAA+AGG + chr1_2:8326129-8326148 Msa0053830:CDS 45.0%
!! CAACCGGTATTGGTAAAGGA+AGG + chr1_2:8326133-8326152 Msa0053830:CDS 45.0%
GGAAGGAGAAAGTCCTTTGA+TGG + chr1_2:8326150-8326169 Msa0053830:CDS 45.0%
ATTTGACTCCCCCAAATCAG+CGG - chr1_2:8326428-8326447 None:intergenic 45.0%
TATGAATGAACCCCTTGCTG+TGG + chr1_2:8326462-8326481 Msa0053830:CDS 45.0%
AAGATTCACTGCCACAGCAA+GGG - chr1_2:8326476-8326495 None:intergenic 45.0%
GTGAATCTTGACCCAGAGAT+TGG + chr1_2:8326487-8326506 Msa0053830:CDS 45.0%
GAGCAACTGTAGAAGGCTTT+AGG - chr1_2:8326525-8326544 None:intergenic 45.0%
AGCTGATGAGCAACTGTAGA+AGG - chr1_2:8326532-8326551 None:intergenic 45.0%
GAACGAGTGTAACAGTTGTC+CGG + chr1_2:8326566-8326585 Msa0053830:CDS 45.0%
ATGTGGACGAAGACCAGAAA+TGG + chr1_2:8326636-8326655 Msa0053830:CDS 45.0%
! ATTGGTGATCGAGTACCTGA+TGG + chr1_2:8326712-8326731 Msa0053830:CDS 45.0%
TCATTTGCGGCCTAAAACAC+CGG - chr1_2:8326744-8326763 None:intergenic 45.0%
CCGCAAATGACCCATTTCTT+TGG + chr1_2:8326754-8326773 Msa0053830:CDS 45.0%
! TTTGGAGTCTATGATGGCCA+TGG + chr1_2:8326772-8326791 Msa0053830:CDS 45.0%
! CATCCATATTGCATTGACCG+AGG + chr1_2:8326910-8326929 Msa0053830:CDS 45.0%
ATCGATGGAGGTCTCAAAGA+TGG + chr1_2:8326959-8326978 Msa0053830:CDS 45.0%
AAGATGGTTGCCAAGATCAG+TGG + chr1_2:8326975-8326994 Msa0053830:CDS 45.0%
!! AAGGTTGATGCAGAAGTTGG+AGG + chr1_2:8327025-8327044 Msa0053830:CDS 45.0%
TTGTCGTGGCAAAGAACCAA+TGG + chr1_2:8327162-8327181 Msa0053830:CDS 45.0%
AGAACCAATGGCGTTATCAG+TGG + chr1_2:8327174-8327193 Msa0053830:CDS 45.0%
!! CCACTGTATCACTTTTCCTC+CGG - chr1_2:8327330-8327349 None:intergenic 45.0%
TGGAATGGCCATCGTGTATT+TGG + chr1_2:8327347-8327366 Msa0053830:CDS 45.0%
!!! GTTGGTTTGGTTCGGTTTTG+AGG + chr1_2:8327813-8327832 Msa0053830:intron 45.0%
! ACATAAAGTGATTTGCGGGG+TGG - chr1_2:8328578-8328597 None:intergenic 45.0%
GTACCTTCTACTCGTAGTTG+CGG + chr1_2:8329171-8329190 Msa0053830:intron 45.0%
TACCTTCTACTCGTAGTTGC+GGG + chr1_2:8329172-8329191 Msa0053830:intron 45.0%
TGCGGGACAACATTGAGATT+TGG + chr1_2:8329189-8329208 Msa0053830:intron 45.0%
GCGGGACAACATTGAGATTT+GGG + chr1_2:8329190-8329209 Msa0053830:intron 45.0%
ATTCATTCCTCGTGCGAAAG+AGG + chr1_2:8329490-8329509 Msa0053830:CDS 45.0%
GGATGTGATGACAAACGAAG+AGG + chr1_2:8329547-8329566 Msa0053830:CDS 45.0%
! AAACGAAGAGGTGTGTGATC+TGG + chr1_2:8329559-8329578 Msa0053830:CDS 45.0%
TCTCCTTCACTGTAGTGCAT+TGG + chr1_2:8329920-8329939 Msa0053830:three_prime_UTR 45.0%
!!! TCTATTTTATTTTATTTATA+AGG + chr1_2:8324982-8325001 Msa0053830:intron 5.0%
!!! ATTTTTATACTATTAAAATA+AGG + chr1_2:8327981-8328000 Msa0053830:intron 5.0%
GACACCTGAAACCCATGGAT+TGG - chr1_2:8325039-8325058 None:intergenic 50.0%
TTTGTCAACGGTGTAGGGTC+TGG - chr1_2:8325116-8325135 None:intergenic 50.0%
TGATGTGTTGCCTCAGATCC+AGG + chr1_2:8325258-8325277 Msa0053830:intron 50.0%
CATAGAGTTGCCTGGATCTG+AGG - chr1_2:8325271-8325290 None:intergenic 50.0%
AAGTTAACCTCCCACCCCTT+TGG - chr1_2:8325856-8325875 None:intergenic 50.0%
! ACGATTAGCCCCAGAAAGTG+AGG + chr1_2:8326216-8326235 Msa0053830:CDS 50.0%
! TGTTGCTCACACCGCTGATT+TGG + chr1_2:8326414-8326433 Msa0053830:CDS 50.0%
!! GTTGCTCACACCGCTGATTT+GGG + chr1_2:8326415-8326434 Msa0053830:CDS 50.0%
!! TTGCTCACACCGCTGATTTG+GGG + chr1_2:8326416-8326435 Msa0053830:CDS 50.0%
AGATTCACTGCCACAGCAAG+GGG - chr1_2:8326475-8326494 None:intergenic 50.0%
CAAGATTCACTGCCACAGCA+AGG - chr1_2:8326477-8326496 None:intergenic 50.0%
GCAACTGCGTCTTCCATTTC+TGG - chr1_2:8326652-8326671 None:intergenic 50.0%
ACGCAGTTGCAACTGTTCCT+CGG + chr1_2:8326662-8326681 Msa0053830:CDS 50.0%
AGTTTACCTGAGAGCCACCA+TGG - chr1_2:8326792-8326811 None:intergenic 50.0%
GTTGTTGCGCCAGAAACTGT+TGG + chr1_2:8327064-8327083 Msa0053830:CDS 50.0%
! TGGTCCACTGATAACGCCAT+TGG - chr1_2:8327181-8327200 None:intergenic 50.0%
CCGGAGGAAAAGTGATACAG+TGG + chr1_2:8327327-8327346 Msa0053830:CDS 50.0%
AGACACGCCTAATCTCCTAG+AGG + chr1_2:8328172-8328191 Msa0053830:intron 50.0%
ATTCCTCGGAGTCAGTCCAA+AGG + chr1_2:8328923-8328942 Msa0053830:intron 50.0%
AGTCAGTCCAAAGGCTGCTA+AGG + chr1_2:8328932-8328951 Msa0053830:intron 50.0%
GTCAGTCCAAAGGCTGCTAA+GGG + chr1_2:8328933-8328952 Msa0053830:intron 50.0%
! GTATGAAAAGAGGGGGCACA+AGG - chr1_2:8328977-8328996 None:intergenic 50.0%
CATTCATCCTCTTTCGCACG+AGG - chr1_2:8329500-8329519 None:intergenic 50.0%
AAACGGCATGGAACTACCCT+CGG + chr1_2:8329613-8329632 Msa0053830:CDS 50.0%
CATGGAACTACCCTCGGAAA+GGG + chr1_2:8329619-8329638 Msa0053830:CDS 50.0%
ATGGAACTACCCTCGGAAAG+GGG + chr1_2:8329620-8329639 Msa0053830:CDS 50.0%
AGTACAGAGGATGAATGCCC+TGG - chr1_2:8329864-8329883 None:intergenic 50.0%
CCTCACAGAGCCTTTGTACT+CGG - chr1_2:8330035-8330054 None:intergenic 50.0%
TCAACGGTGTAGGGTCTGGT+TGG - chr1_2:8325112-8325131 None:intergenic 55.0%
TGTGATACCAAAGGGGTGGG+AGG + chr1_2:8325846-8325865 Msa0053830:five_prime_UTR 55.0%
!! TGCTCACACCGCTGATTTGG+GGG + chr1_2:8326417-8326436 Msa0053830:CDS 55.0%
AGTTGCTCATCAGCTGCCTC+AGG + chr1_2:8326537-8326556 Msa0053830:CDS 55.0%
TCATCAGCTGCCTCAGGAAG+AGG + chr1_2:8326543-8326562 Msa0053830:CDS 55.0%
CATCAGCTGCCTCAGGAAGA+GGG + chr1_2:8326544-8326563 Msa0053830:CDS 55.0%
ACACTCGTTCCCTCTTCCTG+AGG - chr1_2:8326556-8326575 None:intergenic 55.0%
GGAGTCTATGATGGCCATGG+TGG + chr1_2:8326775-8326794 Msa0053830:CDS 55.0%
GCAGTGGAGCCAACAGTTTC+TGG - chr1_2:8327076-8327095 None:intergenic 55.0%
TCGAGAGCCGTTCTTTGTCG+TGG + chr1_2:8327148-8327167 Msa0053830:CDS 55.0%
GCAAGAATTGAAGCAGCCGG+AGG + chr1_2:8327311-8327330 Msa0053830:CDS 55.0%
GACATGTGTCCTACGGGTGT+CGG + chr1_2:8328125-8328144 Msa0053830:intron 55.0%
GTCGGACACCAAACGTGTGT+CGG + chr1_2:8328143-8328162 Msa0053830:intron 55.0%
CTCTGTGTCCGACACACGTT+TGG - chr1_2:8328154-8328173 None:intergenic 55.0%
GTCCCGCAACTACGAGTAGA+AGG - chr1_2:8329177-8329196 None:intergenic 55.0%
GCATGGAACTACCCTCGGAA+AGG + chr1_2:8329618-8329637 Msa0053830:CDS 55.0%
TCGAATCGCGCTCTCCAGAA+AGG + chr1_2:8329686-8329705 Msa0053830:CDS 55.0%
CACAGAGCCTTTGTACTCGG+AGG - chr1_2:8330032-8330051 None:intergenic 55.0%
CCGAGTACAAAGGCTCTGTG+AGG + chr1_2:8330032-8330051 Msa0053830:three_prime_UTR 55.0%
TGATGGCCATGGTGGCTCTC+AGG + chr1_2:8326783-8326802 Msa0053830:CDS 60.0%
CAGGGTCAACGTGTCCGTGT+TGG - chr1_2:8327459-8327478 None:intergenic 60.0%
!! GTTTGGTGTCCGACACCCGT+AGG - chr1_2:8328137-8328156 None:intergenic 60.0%
! CAGCCTTTGGACTGACTCCG+AGG - chr1_2:8328929-8328948 None:intergenic 60.0%
ACTACCCTCGGAAAGGGGAG+AGG + chr1_2:8329625-8329644 Msa0053830:CDS 60.0%
CTACCCTCGGAAAGGGGAGA+GGG + chr1_2:8329626-8329645 Msa0053830:CDS 60.0%
CTACCCTCTCCCCTTTCCGA+GGG - chr1_2:8329632-8329651 None:intergenic 60.0%
ACTACCCTCTCCCCTTTCCG+AGG - chr1_2:8329633-8329652 None:intergenic 60.0%
! TCTGCTGCTGCTTGTGCTGC+AGG - chr1_2:8329659-8329678 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8324813 8330206 8324813 ID=Msa0053830;Name=Msa0053830
chr1_2 mRNA 8324813 8330206 8324813 ID=Msa0053830-mRNA-1;Parent=Msa0053830;Name=Msa0053830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=524|1|1|1|0.6|0.5|6|428|553
chr1_2 exon 8324813 8324878 8324813 ID=Msa0053830-mRNA-1:exon:2960;Parent=Msa0053830-mRNA-1
chr1_2 exon 8325067 8325144 8325067 ID=Msa0053830-mRNA-1:exon:2961;Parent=Msa0053830-mRNA-1
chr1_2 exon 8325522 8326804 8325522 ID=Msa0053830-mRNA-1:exon:2962;Parent=Msa0053830-mRNA-1
chr1_2 exon 8326887 8327204 8326887 ID=Msa0053830-mRNA-1:exon:2963;Parent=Msa0053830-mRNA-1
chr1_2 exon 8327290 8327395 8327290 ID=Msa0053830-mRNA-1:exon:2964;Parent=Msa0053830-mRNA-1
chr1_2 exon 8329444 8330206 8329444 ID=Msa0053830-mRNA-1:exon:2965;Parent=Msa0053830-mRNA-1
chr1_2 five_prime_UTR 8324813 8324878 8324813 ID=Msa0053830-mRNA-1:five_prime_utr;Parent=Msa0053830-mRNA-1
chr1_2 five_prime_UTR 8325067 8325144 8325067 ID=Msa0053830-mRNA-1:five_prime_utr;Parent=Msa0053830-mRNA-1
chr1_2 five_prime_UTR 8325522 8325901 8325522 ID=Msa0053830-mRNA-1:five_prime_utr;Parent=Msa0053830-mRNA-1
chr1_2 CDS 8325902 8326804 8325902 ID=Msa0053830-mRNA-1:cds;Parent=Msa0053830-mRNA-1
chr1_2 CDS 8326887 8327204 8326887 ID=Msa0053830-mRNA-1:cds;Parent=Msa0053830-mRNA-1
chr1_2 CDS 8327290 8327395 8327290 ID=Msa0053830-mRNA-1:cds;Parent=Msa0053830-mRNA-1
chr1_2 CDS 8329444 8329778 8329444 ID=Msa0053830-mRNA-1:cds;Parent=Msa0053830-mRNA-1
chr1_2 three_prime_UTR 8329779 8330206 8329779 ID=Msa0053830-mRNA-1:three_prime_utr;Parent=Msa0053830-mRNA-1
Gene Sequence

>Msa0053830

ATGGAGGTGTTGTTGTATGTGGTTACGGTGTCAATAAGAGTAGGTAACTTAGTCTGCGATAACTCAATCATAGCTACACACATGGATGTATCCAGATTTAAGCTGATGGCAGATGCAGGGTCATTGTCCAATTCTGTAGCTAAGGTTTCCAACGAAACTGTTGTAGGTTCGGACGATTGTCATAATAAGGGTGGCAATTTGGATGTTGAAATCGGTATTACAAAAGTCACTCAACCGGTATTGGTAAAGGAAGGAGAAAGTCCTTTGATGGATATGATATCCCAAAATAAAAGTGTTTTAGTTGCTAGTGATGTACGATTAGCCCCAGAAAGTGAGGATGATGATTCATTATCATTGGAAGGTGAACAATTTATTGATAGCTCATGTTCTCTATCAGTTGTCAGTGAAAACAGTAGTATAGGTGGAGAAGAGTTCATTGCTTCTGATAATACTTCAGAAGTTGGGACACCATGTTCGATAGACATAGAGAAGATCGTCAGTTCTGTCAATATTGTTGCTCACACCGCTGATTTGGGGGAGTCAAATGTTGACACAGATATTATGAATGAACCCCTTGCTGTGGCAGTGAATCTTGACCCAGAGATTGGAGTTGAATCAGACCTAAAGCCTTCTACAGTTGCTCATCAGCTGCCTCAGGAAGAGGGAACGAGTGTAACAGTTGTCCGGAGTGTTTTTGAATTGGATTATACCCCATTATGGGGATTCATATCACTATGTGGACGAAGACCAGAAATGGAAGACGCAGTTGCAACTGTTCCTCGGTTTTTAGAAATTCCCATTCAGATGCTAATTGGTGATCGAGTACCTGATGGAATAAACCGGTGTTTTAGGCCGCAAATGACCCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAATTATTGTCGCGAACGCATCCATATTGCATTGACCGAGGAAATAAAACTTGTCAAGGAAAGTCTAATCGATGGAGGTCTCAAAGATGGTTGCCAAGATCAGTGGAAAAAAGTTTTCACCAATTGTTTCTTAAAGGTTGATGCAGAAGTTGGAGGAACGACTAATGATGAAGTTGTTGCGCCAGAAACTGTTGGCTCCACTGCTGTTGTTGCTCTTATATCTTCATCTCATATTATAGTTGCAAACTGTGGTGATTCGAGAGCCGTTCTTTGTCGTGGCAAAGAACCAATGGCGTTATCAGTGGACCATAAACCGAACCGAGAAGATGAATATGCAAGAATTGAAGCAGCCGGAGGAAAAGTGATACAGTGGAATGGCCATCGTGTATTTGGTGTTCTTGCAATGTCAAGATCTATTGGAGACAGATATTTGAAACCGTCAATTATTCCGGATCCAGAAGTTCAATTCATTCCTCGTGCGAAAGAGGATGAATGTCTCATTTTGGCTAGTGATGGTCTATGGGATGTGATGACAAACGAAGAGGTGTGTGATCTGGCTCGAAAACGTATACTTCTTTGGTACAAGAAAAACGGCATGGAACTACCCTCGGAAAGGGGAGAGGGTAGTGATCCTGCAGCACAAGCAGCAGCAGAGTTGCTATCGAATCGCGCTCTCCAGAAAGGAAGCAAAGACAACATCACTGTGATTGTTGTGGATCTGAAACCTCAACGAAAGTATAAGAACAAAACATGA
Protein sequence

>Msa0053830

MEVLLYVVTVSIRVGNLVCDNSIIATHMDVSRFKLMADAGSLSNSVAKVSNETVVGSDDCHNKGGNLDVEIGITKVTQPVLVKEGESPLMDMISQNKSVLVASDVRLAPESEDDDSLSLEGEQFIDSSCSLSVVSENSSIGGEEFIASDNTSEVGTPCSIDIEKIVSSVNIVAHTADLGESNVDTDIMNEPLAVAVNLDPEIGVESDLKPSTVAHQLPQEEGTSVTVVRSVFELDYTPLWGFISLCGRRPEMEDAVATVPRFLEIPIQMLIGDRVPDGINRCFRPQMTHFFGVYDGHGGSQVANYCRERIHIALTEEIKLVKESLIDGGLKDGCQDQWKKVFTNCFLKVDAEVGGTTNDEVVAPETVGSTAVVALISSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPSIIPDPEVQFIPRAKEDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNGMELPSERGEGSDPAAQAAAELLSNRALQKGSKDNITVIVVDLKPQRKYKNKT*