AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054720 MtrunA17_Chr1g0150111 93.911 542 22 3 1 532 1 541 0.0 1005
Msa0054720 MtrunA17_Chr5g0410321 64.757 576 128 6 1 532 62 606 0.0 712
Msa0054720 MtrunA17_Chr8g0389541 30.605 281 175 8 262 529 275 548 1.07e-25 110
Msa0054720 MtrunA17_Chr7g0263951 31.206 282 174 10 262 529 325 600 8.49e-25 108
Msa0054720 MtrunA17_Chr2g0298001 23.673 490 325 15 74 524 109 588 4.91e-22 99.8
Msa0054720 MtrunA17_Chr8g0335841 22.490 498 296 18 81 524 111 572 4.13e-16 81.3
Msa0054720 MtrunA17_Chr4g0072181 22.899 345 230 10 200 511 32 373 3.24e-12 68.2
Msa0054720 MtrunA17_Chr4g0056151 42.466 73 42 0 455 527 57 129 7.73e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054720 AT4G31180.1 63.016 557 179 4 3 532 2 558 0.0 716
Msa0054720 AT4G31180.2 63.016 557 179 4 3 532 2 558 0.0 716
Msa0054720 AT4G26870.1 64.453 512 174 3 26 532 24 532 0.0 679
Msa0054720 AT5G56680.1 29.749 279 176 8 262 527 296 567 1.60e-26 114
Msa0054720 AT4G17300.1 25.322 466 253 15 113 527 141 562 4.47e-26 112
Msa0054720 AT4G17300.2 25.322 466 253 15 113 527 161 582 4.73e-26 112
Msa0054720 AT1G70980.1 28.214 280 181 7 262 527 293 566 1.12e-22 102
Msa0054720 AT3G11710.1 23.422 491 314 17 78 524 133 605 2.45e-18 89.0
Msa0054720 AT3G07420.1 24.535 269 189 8 266 525 368 631 1.68e-11 67.4

Find 172 sgRNAs with CRISPR-Local

Find 648 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACATTGATTCTTTC+AGG 0.117282 1_2:-9436780 Msa0054720:intron
CATTGATGTCCCCAAGAATT+TGG 0.169294 1_2:-9440041 Msa0054720:five_prime_UTR
CAGCTTTGCGAGTTCCTTCT+TGG 0.187183 1_2:+9439919 None:intergenic
ATTCCAGCCGCTCCTATTAA+AGG 0.200895 1_2:-9439536 Msa0054720:CDS
CACAAGCAAATGTCAATATT+TGG 0.203397 1_2:-9438641 Msa0054720:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.255342 1_2:-9439674 Msa0054720:CDS
AAGTTGACATTGGAGGTTTC+CGG 0.264653 1_2:+9439993 None:intergenic
CAAACAAATTAACACCTTTA+GGG 0.270476 1_2:+9438298 None:intergenic
CTTAACAAAATTAATAAATA+AGG 0.276011 1_2:-9440484 None:intergenic
TCAAAAGAGTTACTGTAGTT+TGG 0.284688 1_2:+9437084 None:intergenic
TCCCGCTCATTTGCTTTATT+AGG 0.289865 1_2:+9440328 None:intergenic
TATGTAAGCCGCAGAGTATT+TGG 0.299031 1_2:+9438114 None:intergenic
TGAAATTGAGAAGGCCATTC+AGG 0.299926 1_2:-9439282 Msa0054720:intron
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 1_2:+9439524 None:intergenic
TGGAAAATTCCTTGATTTGC+TGG 0.311128 1_2:+9438973 None:intergenic
AGGCATCTGTGCGAGTTTAC+AGG 0.319353 1_2:-9438557 Msa0054720:CDS
GGGTTGCAATTCCAAATTCT+TGG 0.322871 1_2:+9440030 None:intergenic
TTAATAAATAAGGATTTGTT+AGG 0.325385 1_2:-9440474 Msa0054720:five_prime_UTR
AAGTAAGTCCAAGGCATTAT+TGG 0.332543 1_2:+9436361 None:intergenic
CAAAAGAGTTACTGTAGTTT+GGG 0.335107 1_2:+9437085 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 1_2:-9439648 Msa0054720:CDS
TGGCGTCAAGCTACACCTTC+AGG 0.350829 1_2:+9436381 None:intergenic
AATTGTTTATAAGGCAGATT+GGG 0.354080 1_2:+9435947 None:intergenic
CACAATACAGTTTCCTCACT+TGG 0.354867 1_2:+9439363 None:intergenic
CATGATGGTATGAAATTGTT+TGG 0.357276 1_2:-9436000 Msa0054720:three_prime_UTR
CAGAAGATTCCTTTACTCAT+AGG 0.359787 1_2:-9438577 Msa0054720:CDS
GGTTGCAATTCCAAATTCTT+GGG 0.368431 1_2:+9440031 None:intergenic
CACACTCCTAAGTTGATTGC+TGG 0.375345 1_2:-9438743 Msa0054720:CDS
CAAGAGGATAGGAATGAAAT+TGG 0.382453 1_2:-9440399 Msa0054720:five_prime_UTR
TCAACTAGGGTCCAGTCGTT+AGG 0.388380 1_2:+9439782 None:intergenic
TAGCAAGGCATTGTATAAAA+TGG 0.394303 1_2:+9437114 None:intergenic
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 1_2:+9439879 None:intergenic
GTACCACCACACGGTGGCTT+TGG 0.402704 1_2:-9436562 Msa0054720:CDS
GAATTGTTTATAAGGCAGAT+TGG 0.409095 1_2:+9435946 None:intergenic
ACAACTTGTTCGTGTGAATC+AGG 0.411639 1_2:-9439034 Msa0054720:CDS
TACAGGTCTTGATGTTGAAA+TGG 0.423398 1_2:-9438540 Msa0054720:CDS
CAAGAAGGAACTCGCAAAGC+TGG 0.423555 1_2:-9439918 Msa0054720:CDS
CAAAGGGAAACCTGCATGCC+TGG 0.426932 1_2:-9438681 Msa0054720:CDS
AGGGTGGAGCTGCTGTCTTT+AGG 0.428133 1_2:-9438712 Msa0054720:CDS
ATGTGATTGAGTGATAAATA+TGG 0.439555 1_2:-9436128 Msa0054720:three_prime_UTR
GGAGTAGAGATTGAACCTTT+TGG 0.442706 1_2:-9437334 Msa0054720:CDS
AACACCTTTAGGGGTTCAAA+CGG 0.444877 1_2:+9438308 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 1_2:+9439620 None:intergenic
CTTGATTTGCTGGTGTTCGC+AGG 0.452358 1_2:+9438983 None:intergenic
GCCCTCCCACGGATTAGAAC+CGG 0.456211 1_2:+9439731 None:intergenic
TGGAGCTGCTGTCTTTAGGC+TGG 0.464922 1_2:-9438708 Msa0054720:CDS
GATTAAGAAACATTATTATG+AGG 0.466183 1_2:-9438516 Msa0054720:intron
TTAGGTGAGGAGATAATATC+AGG 0.470682 1_2:-9436877 Msa0054720:intron
TATTAAAGGTGCCTCACAAC+AGG 0.473545 1_2:-9439522 Msa0054720:intron
GAGTCTATTGTCGATGTTGA+AGG 0.473757 1_2:-9439569 Msa0054720:CDS
TTACAGTTCCAACTTGAGAC+TGG 0.475421 1_2:+9438947 None:intergenic
AATGCCATCTTCTTCCCAAC+TGG 0.476125 1_2:+9439695 None:intergenic
TTAAGATCTTTAGGAGCTGA+TGG 0.477807 1_2:-9436041 Msa0054720:three_prime_UTR
CTTTGCGAGTTCCTTCTTGG+AGG 0.479823 1_2:+9439922 None:intergenic
AAAATAATTGATGATGTTGA+AGG 0.484253 1_2:-9440193 Msa0054720:five_prime_UTR
TGGGGACATCAATGAGCCTA+TGG 0.485195 1_2:+9440050 None:intergenic
ACATTGGAGGTTTCCGGAGA+AGG 0.487766 1_2:+9439999 None:intergenic
AACCCTAGCAATACCTTCTC+CGG 0.488131 1_2:-9440012 Msa0054720:five_prime_UTR
TGAGATTCTGAAGTTGACAT+TGG 0.488423 1_2:+9439983 None:intergenic
CGGTGGCTTTGGAGTAGGCT+TGG 0.490259 1_2:-9436551 Msa0054720:CDS
CAACTAGGGTCCAGTCGTTA+GGG 0.490985 1_2:+9439783 None:intergenic
GCAGCATCCTCGATATTAAA+CGG 0.494569 1_2:+9439317 None:intergenic
TCACCACACCCACTTTGAAA+AGG 0.495870 1_2:-9436176 Msa0054720:three_prime_UTR
TGGTTTCACCGTACAGTGCT+TGG 0.499781 1_2:-9439654 Msa0054720:CDS
TTTGTTTCTGATGACAGTGT+CGG 0.500363 1_2:+9439956 None:intergenic
AAAATGGTCTTACAGCCAAC+GGG 0.502027 1_2:+9437130 None:intergenic
GTCTTACAGCCAACGGGTAC+CGG 0.506627 1_2:+9437136 None:intergenic
TCAGTATTCAAGTCACCAAA+AGG 0.506705 1_2:+9437319 None:intergenic
CTAGATCCAGCAATCAACTT+AGG 0.510006 1_2:+9438737 None:intergenic
GATTCTGAAGTTGACATTGG+AGG 0.510514 1_2:+9439986 None:intergenic
TTTCACCGTCAACTTGGAGC+TGG 0.511610 1_2:-9436291 Msa0054720:three_prime_UTR
GGTGACTGAGCCAGGCATGC+AGG 0.511713 1_2:+9438671 None:intergenic
TTTAATAGGAGCGGCTGGAA+TGG 0.513685 1_2:+9439538 None:intergenic
GCACCTTTAATAGGAGCGGC+TGG 0.516328 1_2:+9439533 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 1_2:-9439709 Msa0054720:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 1_2:-9439710 Msa0054720:CDS
TTCCACATCCAGTCTCAAGT+TGG 0.521976 1_2:-9438955 Msa0054720:CDS
TAACACCAGCTCCAAGTTGA+CGG 0.522048 1_2:+9436286 None:intergenic
ACACCTTTAGGGGTTCAAAC+GGG 0.524064 1_2:+9438309 None:intergenic
CAGCCAACGGGTACCGGTGA+AGG 0.524085 1_2:+9437142 None:intergenic
CTGCGGCTTACATATGAAGA+AGG 0.526092 1_2:-9438105 Msa0054720:CDS
TTTCCGGAGAAGGTATTGCT+AGG 0.528622 1_2:+9440009 None:intergenic
CATGCAGTTCTATATGAAGC+GGG 0.529598 1_2:+9436210 None:intergenic
AATGAATATATATACCTGAA+TGG 0.529761 1_2:+9439268 None:intergenic
CTGAAAGAATCAATGTAAGC+AGG 0.530318 1_2:+9436781 None:intergenic
AATCGTTGAGAGCCTCAACT+AGG 0.531734 1_2:+9439768 None:intergenic
GAAACTGTATTGTGTGAGTA+AGG 0.532678 1_2:-9439354 Msa0054720:CDS
AAACAAATTAACACCTTTAG+GGG 0.533347 1_2:+9438299 None:intergenic
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 1_2:+9439720 None:intergenic
CTGCGAACACCAGCAAATCA+AGG 0.537117 1_2:-9438982 Msa0054720:CDS
GAAGTTGAGGTGACTGAGCC+AGG 0.538658 1_2:+9438663 None:intergenic
AACAATCCGGTTCTAATCCG+TGG 0.538866 1_2:-9439737 Msa0054720:CDS
TCTTTAGGCTGGACTACAAA+GGG 0.538957 1_2:-9438697 Msa0054720:CDS
AGAAAGGAAACTAGGCCAGC+TGG 0.539715 1_2:-9437293 Msa0054720:CDS
TACTCTGCCGTTTAATATCG+AGG 0.540763 1_2:-9439324 Msa0054720:CDS
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 1_2:+9439868 None:intergenic
TCGATATTAAACGGCAGAGT+AGG 0.544830 1_2:+9439326 None:intergenic
CGGCGGCAACTTCTCGGCGG+CGG 0.544898 1_2:+9439885 None:intergenic
ACCTAATAAAGCAAATGAGC+GGG 0.545231 1_2:-9440329 Msa0054720:five_prime_UTR
CCACACGGTGGCTTTGGAGT+AGG 0.547341 1_2:-9436556 Msa0054720:CDS
TTTGAACACAAAATGTAAGA+AGG 0.547679 1_2:-9438357 Msa0054720:CDS
GCTTGACGCCAATAATGCCT+TGG 0.549853 1_2:-9436369 Msa0054720:three_prime_UTR
TAAAATGGTCTTACAGCCAA+CGG 0.552316 1_2:+9437129 None:intergenic
CGTTAGGGAGCTCAATGAGC+GGG 0.558240 1_2:+9439798 None:intergenic
GACATTTGCTTGTGAAGTTG+AGG 0.558674 1_2:+9438650 None:intergenic
GCACAGATGCCTATGAGTAA+AGG 0.560403 1_2:+9438568 None:intergenic
TTCCAACTTGAGACTGGATG+TGG 0.562506 1_2:+9438953 None:intergenic
TTCCGGAGAAGGTATTGCTA+GGG 0.566546 1_2:+9440010 None:intergenic
AAATGCTAATAACATCATCA+TGG 0.570368 1_2:+9436448 None:intergenic
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 1_2:+9439865 None:intergenic
CAGAGTTCTATATCCTTCAC+CGG 0.573477 1_2:-9437155 Msa0054720:CDS
ATTAAACGGCAGAGTAGGAA+TGG 0.575600 1_2:+9439331 None:intergenic
TAGTTTGGGTTGTCATAGCA+AGG 0.575643 1_2:+9437099 None:intergenic
GAAGAACGTGCACAAGCTTG+CGG 0.577219 1_2:-9436823 Msa0054720:CDS
CACATTCAACTGAAGCCTGA+AGG 0.578547 1_2:-9436396 Msa0054720:three_prime_UTR
GTTGCAATTCCAAATTCTTG+GGG 0.580607 1_2:+9440032 None:intergenic
TCGACCAGTTGGGAAGAAGA+TGG 0.581394 1_2:-9439699 Msa0054720:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 1_2:+9439586 None:intergenic
TGCACAAGCTTGCGGCATTG+AGG 0.583418 1_2:-9436815 Msa0054720:CDS
ACTGAAGCAGAAAGGAAACT+AGG 0.584857 1_2:-9437301 Msa0054720:CDS
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 1_2:+9439862 None:intergenic
GTCTTTAGGCTGGACTACAA+AGG 0.586503 1_2:-9438698 Msa0054720:CDS
AAACCATAATTGACAGCAAG+GGG 0.592667 1_2:+9439824 None:intergenic
ACTTGAATACTGAAGCAGAA+AGG 0.595013 1_2:-9437309 Msa0054720:CDS
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 1_2:-9439618 Msa0054720:CDS
GTACCCGTTTGAACCCCTAA+AGG 0.597654 1_2:-9438312 Msa0054720:intron
ACATCCCCTATAAAATCCAT+AGG 0.602208 1_2:-9440066 Msa0054720:five_prime_UTR
CGATTCACTAGAGAACAATC+CGG 0.602622 1_2:-9439750 Msa0054720:CDS
ACAATCCGGTTCTAATCCGT+GGG 0.603153 1_2:-9439736 Msa0054720:CDS
AGAGAGAGTCGATGTAGCAG+AGG 0.603238 1_2:+9439859 None:intergenic
TCCGGTTCTAATCCGTGGGA+GGG 0.607118 1_2:-9439732 Msa0054720:CDS
ATCAAAACCAACCTGTTGTG+AGG 0.608593 1_2:+9439511 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 1_2:+9439529 None:intergenic
TCATTGAGCTCCCTAACGAC+TGG 0.609497 1_2:-9439793 Msa0054720:CDS
TATCCTTCACCGGTACCCGT+TGG 0.609544 1_2:-9437145 Msa0054720:CDS
CAGCAATCAACTTAGGAGTG+TGG 0.611888 1_2:+9438744 None:intergenic
GCGGCAAATTTCACCATCTG+CGG 0.614321 1_2:+9439605 None:intergenic
ATTGCTGGATCTAGTGAGGG+TGG 0.614640 1_2:-9438728 Msa0054720:CDS
TATTGTCGATGTTGAAGGTG+TGG 0.616511 1_2:-9439564 Msa0054720:CDS
TCAGGCTTCAGTTGAATGTG+AGG 0.617159 1_2:+9436399 None:intergenic
ATCCGGTTCTAATCCGTGGG+AGG 0.620307 1_2:-9439733 Msa0054720:CDS
ATCATGGTGCAATCCTGAGT+GGG 0.620490 1_2:+9436464 None:intergenic
GCATGCAGTTCTATATGAAG+CGG 0.621106 1_2:+9436209 None:intergenic
AATAGACTCACGGCTGAGAG+CGG 0.623488 1_2:+9439583 None:intergenic
CGTAACAAAATTGATAAACA+AGG 0.623642 1_2:-9440280 Msa0054720:five_prime_UTR
AAGTGAAGTTGAAATTGAGA+AGG 0.624126 1_2:-9439291 Msa0054720:CDS
ATCGTTGAGAGCCTCAACTA+GGG 0.624477 1_2:+9439769 None:intergenic
TGTTTGGAAAAGTAAGTCCA+AGG 0.629031 1_2:+9436352 None:intergenic
TAAGAAGGATCTCGAAGCTG+TGG 0.629352 1_2:-9438342 Msa0054720:CDS
GTTGATTGCTGGATCTAGTG+AGG 0.632210 1_2:-9438732 Msa0054720:CDS
CAACATCGACAATAGACTCA+CGG 0.632667 1_2:+9439573 None:intergenic
AACCTAATAAAGCAAATGAG+CGG 0.635132 1_2:-9440330 Msa0054720:five_prime_UTR
CGTGTAGTAATGCTCTTCTG+TGG 0.635161 1_2:-9436526 Msa0054720:CDS
TGCCTGAACCAAGCACTGTA+CGG 0.635520 1_2:+9439646 None:intergenic
TAACGACTGGACCCTAGTTG+AGG 0.635757 1_2:-9439780 Msa0054720:CDS
AGAAGGTATTCAGATGCTCA+AGG 0.641602 1_2:-9438088 Msa0054720:intron
ATTGTTTATAAGGCAGATTG+GGG 0.642473 1_2:+9435948 None:intergenic
TTGATTGCTGGATCTAGTGA+GGG 0.644845 1_2:-9438731 Msa0054720:CDS
ACTCCAAAGCCACCGTGTGG+TGG 0.646949 1_2:+9436559 None:intergenic
ACACTATTAAAATAGTGCTG+TGG 0.647523 1_2:-9436332 Msa0054720:three_prime_UTR
CATCATGGTGCAATCCTGAG+TGG 0.650761 1_2:+9436463 None:intergenic
AGATATGGTGTACCACCACA+CGG 0.671410 1_2:-9436571 Msa0054720:CDS
AAAACCATAATTGACAGCAA+GGG 0.671638 1_2:+9439823 None:intergenic
TATAGGTTGAAATCCAAGTG+AGG 0.674003 1_2:-9439376 Msa0054720:intron
GCAATCCTGAGTGGGTCACG+TGG 0.678111 1_2:+9436472 None:intergenic
TCGTTAGGGAGCTCAATGAG+CGG 0.683815 1_2:+9439797 None:intergenic
TGGCGGCGGCAACTTCTCGG+CGG 0.684255 1_2:+9439882 None:intergenic
ATGCAGTTCTATATGAAGCG+GGG 0.701942 1_2:+9436211 None:intergenic
CCTACTCCAAAGCCACCGTG+TGG 0.729566 1_2:+9436556 None:intergenic
AACCATAATTGACAGCAAGG+GGG 0.738850 1_2:+9439825 None:intergenic
AGTATCTTCCAAATACTCTG+CGG 0.740430 1_2:-9438122 Msa0054720:CDS
TATGGTGTACCACCACACGG+TGG 0.820152 1_2:-9436568 Msa0054720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTACAACAATAAA+AGG + chr1_2:9436230-9436249 None:intergenic 10.0%
!! TCTTAAAAAATAATATTATG+TGG - chr1_2:9436344-9436363 Msa0054720:three_prime_UTR 10.0%
!! CTTAAAAAATAATATTATGT+GGG - chr1_2:9436345-9436364 Msa0054720:three_prime_UTR 10.0%
!!! AATTATTTTACAACAATAAA+AGG + chr1_2:9436230-9436249 None:intergenic 10.0%
!! TCTTAAAAAATAATATTATG+TGG - chr1_2:9436344-9436363 Msa0054720:three_prime_UTR 10.0%
!! CTTAAAAAATAATATTATGT+GGG - chr1_2:9436345-9436364 Msa0054720:three_prime_UTR 10.0%
!!! TTAATAAATAAGGATTTGTT+AGG - chr1_2:9435960-9435979 Msa0054720:three_prime_UTR 15.0%
!! AAATATTTGCTTCAAAAAAA+AGG - chr1_2:9436012-9436031 Msa0054720:three_prime_UTR 15.0%
!! GAAAAAAAGCTTAAAAATAA+GGG + chr1_2:9436274-9436293 None:intergenic 15.0%
!! TGAAAAAAAGCTTAAAAATA+AGG + chr1_2:9436275-9436294 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG - chr1_2:9437015-9437034 Msa0054720:intron 15.0%
!! AGAATAATATTAGAGAAAAT+AGG + chr1_2:9437515-9437534 None:intergenic 15.0%
!! ATTATATAAATGTCATTGAA+AGG - chr1_2:9438630-9438649 Msa0054720:CDS 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG + chr1_2:9438853-9438872 None:intergenic 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG - chr1_2:9438853-9438872 Msa0054720:intron 15.0%
!! TCATTTACTATGATATATAT+AGG - chr1_2:9439001-9439020 Msa0054720:CDS 15.0%
!! TCTTAGATAAAAATTAGAAA+GGG + chr1_2:9440333-9440352 None:intergenic 15.0%
!! TTCTTAGATAAAAATTAGAA+AGG + chr1_2:9440334-9440353 None:intergenic 15.0%
!!! TTAATAAATAAGGATTTGTT+AGG - chr1_2:9435960-9435979 Msa0054720:three_prime_UTR 15.0%
!! AAATATTTGCTTCAAAAAAA+AGG - chr1_2:9436012-9436031 Msa0054720:three_prime_UTR 15.0%
!! GAAAAAAAGCTTAAAAATAA+GGG + chr1_2:9436274-9436293 None:intergenic 15.0%
!! TGAAAAAAAGCTTAAAAATA+AGG + chr1_2:9436275-9436294 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG - chr1_2:9437015-9437034 Msa0054720:intron 15.0%
!! AGAATAATATTAGAGAAAAT+AGG + chr1_2:9437515-9437534 None:intergenic 15.0%
!! ATTATATAAATGTCATTGAA+AGG - chr1_2:9438630-9438649 Msa0054720:CDS 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG + chr1_2:9438853-9438872 None:intergenic 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG - chr1_2:9438853-9438872 Msa0054720:intron 15.0%
!! TCATTTACTATGATATATAT+AGG - chr1_2:9439001-9439020 Msa0054720:CDS 15.0%
!! TCTTAGATAAAAATTAGAAA+GGG + chr1_2:9440333-9440352 None:intergenic 15.0%
!! TTCTTAGATAAAAATTAGAA+AGG + chr1_2:9440334-9440353 None:intergenic 15.0%
!!! TTTTTTAGATGGAATTTGTT+AGG - chr1_2:9436068-9436087 Msa0054720:three_prime_UTR 20.0%
!!! AAAATAATTGATGATGTTGA+AGG - chr1_2:9436241-9436260 Msa0054720:three_prime_UTR 20.0%
!! AATGAATATATATACCTGAA+TGG + chr1_2:9437169-9437188 None:intergenic 20.0%
!! TCAATTACAACATTTCTAAT+CGG + chr1_2:9437193-9437212 None:intergenic 20.0%
!!! TGTTGTTTTGTTTAATATAC+CGG - chr1_2:9437319-9437338 Msa0054720:CDS 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG + chr1_2:9437599-9437618 None:intergenic 20.0%
!! GATTAAGAAACATTATTATG+AGG - chr1_2:9437918-9437937 Msa0054720:intron 20.0%
!!! TCAATTTATTTGTTTTGTAG+TGG - chr1_2:9438196-9438215 Msa0054720:intron 20.0%
!!! CAATTTATTTGTTTTGTAGT+GGG - chr1_2:9438197-9438216 Msa0054720:intron 20.0%
!!! TCAATTTTACAAAATAGACA+GGG + chr1_2:9438473-9438492 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG - chr1_2:9438475-9438494 Msa0054720:intron 20.0%
!! TTTAAACTTTACAACAAGAT+TGG + chr1_2:9438580-9438599 None:intergenic 20.0%
!! TAAATTGATGAAAATGTACT+TGG - chr1_2:9438671-9438690 Msa0054720:CDS 20.0%
!! AAATTGATGAAAATGTACTT+GGG - chr1_2:9438672-9438691 Msa0054720:CDS 20.0%
!! AATAGTTACAATTATTTGGT+TGG + chr1_2:9438824-9438843 None:intergenic 20.0%
!! AACCAAATAATTGTAACTAT+TGG - chr1_2:9438823-9438842 Msa0054720:intron 20.0%
!! ACCAAATAATTGTAACTATT+GGG - chr1_2:9438824-9438843 Msa0054720:intron 20.0%
!! TTACTATGATATATATAGGA+TGG - chr1_2:9439005-9439024 Msa0054720:CDS 20.0%
!! TGTAATTCTATTTATAGGTA+TGG - chr1_2:9439254-9439273 Msa0054720:intron 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG - chr1_2:9439797-9439816 Msa0054720:CDS 20.0%
!! AATACTGAATAGACAAAAAA+TGG + chr1_2:9440285-9440304 None:intergenic 20.0%
!! CTTAGATAAAAATTAGAAAG+GGG + chr1_2:9440332-9440351 None:intergenic 20.0%
!!! GAATACTTTTTAAGATCTTT+AGG - chr1_2:9440384-9440403 Msa0054720:five_prime_UTR 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG - chr1_2:9436068-9436087 Msa0054720:three_prime_UTR 20.0%
!!! AAAATAATTGATGATGTTGA+AGG - chr1_2:9436241-9436260 Msa0054720:three_prime_UTR 20.0%
!! AATGAATATATATACCTGAA+TGG + chr1_2:9437169-9437188 None:intergenic 20.0%
!! TCAATTACAACATTTCTAAT+CGG + chr1_2:9437193-9437212 None:intergenic 20.0%
!!! TGTTGTTTTGTTTAATATAC+CGG - chr1_2:9437319-9437338 Msa0054720:CDS 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG + chr1_2:9437599-9437618 None:intergenic 20.0%
!! GATTAAGAAACATTATTATG+AGG - chr1_2:9437918-9437937 Msa0054720:intron 20.0%
!!! TCAATTTATTTGTTTTGTAG+TGG - chr1_2:9438196-9438215 Msa0054720:intron 20.0%
!!! CAATTTATTTGTTTTGTAGT+GGG - chr1_2:9438197-9438216 Msa0054720:intron 20.0%
!!! TCAATTTTACAAAATAGACA+GGG + chr1_2:9438473-9438492 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG - chr1_2:9438475-9438494 Msa0054720:intron 20.0%
!! TTTAAACTTTACAACAAGAT+TGG + chr1_2:9438580-9438599 None:intergenic 20.0%
!! TAAATTGATGAAAATGTACT+TGG - chr1_2:9438671-9438690 Msa0054720:CDS 20.0%
!! AAATTGATGAAAATGTACTT+GGG - chr1_2:9438672-9438691 Msa0054720:CDS 20.0%
!! AATAGTTACAATTATTTGGT+TGG + chr1_2:9438824-9438843 None:intergenic 20.0%
!! AACCAAATAATTGTAACTAT+TGG - chr1_2:9438823-9438842 Msa0054720:intron 20.0%
!! ACCAAATAATTGTAACTATT+GGG - chr1_2:9438824-9438843 Msa0054720:intron 20.0%
!! TTACTATGATATATATAGGA+TGG - chr1_2:9439005-9439024 Msa0054720:CDS 20.0%
!! TGTAATTCTATTTATAGGTA+TGG - chr1_2:9439254-9439273 Msa0054720:intron 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG - chr1_2:9439797-9439816 Msa0054720:CDS 20.0%
!! AATACTGAATAGACAAAAAA+TGG + chr1_2:9440285-9440304 None:intergenic 20.0%
!! CTTAGATAAAAATTAGAAAG+GGG + chr1_2:9440332-9440351 None:intergenic 20.0%
!!! GAATACTTTTTAAGATCTTT+AGG - chr1_2:9440384-9440403 Msa0054720:five_prime_UTR 20.0%
! CGTAACAAAATTGATAAACA+AGG - chr1_2:9436154-9436173 Msa0054720:three_prime_UTR 25.0%
! ATCAGAAACAAAAAGCAAAA+AGG - chr1_2:9436489-9436508 Msa0054720:CDS 25.0%
!!! TTGATTATAATGGTGTTATG+TGG - chr1_2:9437025-9437044 Msa0054720:intron 25.0%
!! AACTTAAGAAATGCATTTTG+CGG - chr1_2:9437606-9437625 Msa0054720:intron 25.0%
! ACATTATTATGAGGTACATT+TGG - chr1_2:9437927-9437946 Msa0054720:intron 25.0%
!! ACTGATACTTTTGTGTTTTT+TGG - chr1_2:9438007-9438026 Msa0054720:intron 25.0%
! TTTGAACACAAAATGTAAGA+AGG - chr1_2:9438077-9438096 Msa0054720:intron 25.0%
! AAACAAATTAACACCTTTAG+GGG + chr1_2:9438138-9438157 None:intergenic 25.0%
! CAAACAAATTAACACCTTTA+GGG + chr1_2:9438139-9438158 None:intergenic 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG - chr1_2:9438138-9438157 Msa0054720:intron 25.0%
! GATAAACAAACAAATGTGAT+AGG - chr1_2:9438410-9438429 Msa0054720:intron 25.0%
!! CTCAATTTTACAAAATAGAC+AGG + chr1_2:9438474-9438493 None:intergenic 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG - chr1_2:9438474-9438493 Msa0054720:intron 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG - chr1_2:9438476-9438495 Msa0054720:intron 25.0%
! TATAAGATTAAACTGTACAC+AGG + chr1_2:9438530-9438549 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG + chr1_2:9438736-9438755 None:intergenic 25.0%
! TTTAGTCATTTCATTGATGA+TGG - chr1_2:9438751-9438770 Msa0054720:CDS 25.0%
!! TTGGAATTTTCAAAAATTGG+AGG + chr1_2:9438805-9438824 None:intergenic 25.0%
!! TGGTTGGAATTTTCAAAAAT+TGG + chr1_2:9438808-9438827 None:intergenic 25.0%
! CCAAATAATTGTAACTATTG+GGG - chr1_2:9438825-9438844 Msa0054720:intron 25.0%
! AAAGGACATAGTTATTTGAT+TGG - chr1_2:9438871-9438890 Msa0054720:intron 25.0%
!!! TTTCCTCTTTTAGTTAGTTT+TGG - chr1_2:9438955-9438974 Msa0054720:CDS 25.0%
!!! TTCCTCTTTTAGTTAGTTTT+GGG - chr1_2:9438956-9438975 Msa0054720:CDS 25.0%
!! GTTATAAAAGATTTGAGACA+GGG + chr1_2:9439183-9439202 None:intergenic 25.0%
!! AGTTATAAAAGATTTGAGAC+AGG + chr1_2:9439184-9439203 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG - chr1_2:9439249-9439268 Msa0054720:intron 25.0%
!! TATGGAAGTACAAACAAATT+TGG + chr1_2:9439482-9439501 None:intergenic 25.0%
! GTTCAATGTCTTTGTTAATA+CGG - chr1_2:9439747-9439766 Msa0054720:CDS 25.0%
! TTCAATGTCTTTGTTAATAC+GGG - chr1_2:9439748-9439767 Msa0054720:CDS 25.0%
!! CTCTGGTTATAATGATTTTA+TGG - chr1_2:9439796-9439815 Msa0054720:CDS 25.0%
!! CTGGTTATAATGATTTTATG+GGG - chr1_2:9439798-9439817 Msa0054720:CDS 25.0%
!!! TGATCAATCATTTAGTTTTC+TGG + chr1_2:9439838-9439857 None:intergenic 25.0%
! TGATTGATCATTTACAGATA+TGG - chr1_2:9439848-9439867 Msa0054720:CDS 25.0%
! AAATGCTAATAACATCATCA+TGG + chr1_2:9439989-9440008 None:intergenic 25.0%
!!! AGCACTATTTTAATAGTGTT+TGG + chr1_2:9440101-9440120 None:intergenic 25.0%
! ATGTGATTGAGTGATAAATA+TGG - chr1_2:9440306-9440325 Msa0054720:five_prime_UTR 25.0%
!! GTTTTTACTTATGTACATGA+TGG - chr1_2:9440419-9440438 Msa0054720:five_prime_UTR 25.0%
! CGTAACAAAATTGATAAACA+AGG - chr1_2:9436154-9436173 Msa0054720:three_prime_UTR 25.0%
! ATCAGAAACAAAAAGCAAAA+AGG - chr1_2:9436489-9436508 Msa0054720:CDS 25.0%
!!! TTGATTATAATGGTGTTATG+TGG - chr1_2:9437025-9437044 Msa0054720:intron 25.0%
!! AACTTAAGAAATGCATTTTG+CGG - chr1_2:9437606-9437625 Msa0054720:intron 25.0%
! ACATTATTATGAGGTACATT+TGG - chr1_2:9437927-9437946 Msa0054720:intron 25.0%
!! ACTGATACTTTTGTGTTTTT+TGG - chr1_2:9438007-9438026 Msa0054720:intron 25.0%
! TTTGAACACAAAATGTAAGA+AGG - chr1_2:9438077-9438096 Msa0054720:intron 25.0%
! AAACAAATTAACACCTTTAG+GGG + chr1_2:9438138-9438157 None:intergenic 25.0%
! CAAACAAATTAACACCTTTA+GGG + chr1_2:9438139-9438158 None:intergenic 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG - chr1_2:9438138-9438157 Msa0054720:intron 25.0%
! GATAAACAAACAAATGTGAT+AGG - chr1_2:9438410-9438429 Msa0054720:intron 25.0%
!! CTCAATTTTACAAAATAGAC+AGG + chr1_2:9438474-9438493 None:intergenic 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG - chr1_2:9438474-9438493 Msa0054720:intron 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG - chr1_2:9438476-9438495 Msa0054720:intron 25.0%
! TATAAGATTAAACTGTACAC+AGG + chr1_2:9438530-9438549 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG + chr1_2:9438736-9438755 None:intergenic 25.0%
! TTTAGTCATTTCATTGATGA+TGG - chr1_2:9438751-9438770 Msa0054720:CDS 25.0%
!! TTGGAATTTTCAAAAATTGG+AGG + chr1_2:9438805-9438824 None:intergenic 25.0%
!! TGGTTGGAATTTTCAAAAAT+TGG + chr1_2:9438808-9438827 None:intergenic 25.0%
! CCAAATAATTGTAACTATTG+GGG - chr1_2:9438825-9438844 Msa0054720:intron 25.0%
! AAAGGACATAGTTATTTGAT+TGG - chr1_2:9438871-9438890 Msa0054720:intron 25.0%
!!! TTTCCTCTTTTAGTTAGTTT+TGG - chr1_2:9438955-9438974 Msa0054720:CDS 25.0%
!!! TTCCTCTTTTAGTTAGTTTT+GGG - chr1_2:9438956-9438975 Msa0054720:CDS 25.0%
!! GTTATAAAAGATTTGAGACA+GGG + chr1_2:9439183-9439202 None:intergenic 25.0%
!! AGTTATAAAAGATTTGAGAC+AGG + chr1_2:9439184-9439203 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG - chr1_2:9439249-9439268 Msa0054720:intron 25.0%
!! TATGGAAGTACAAACAAATT+TGG + chr1_2:9439482-9439501 None:intergenic 25.0%
! GTTCAATGTCTTTGTTAATA+CGG - chr1_2:9439747-9439766 Msa0054720:CDS 25.0%
! TTCAATGTCTTTGTTAATAC+GGG - chr1_2:9439748-9439767 Msa0054720:CDS 25.0%
!! CTCTGGTTATAATGATTTTA+TGG - chr1_2:9439796-9439815 Msa0054720:CDS 25.0%
!! CTGGTTATAATGATTTTATG+GGG - chr1_2:9439798-9439817 Msa0054720:CDS 25.0%
!!! TGATCAATCATTTAGTTTTC+TGG + chr1_2:9439838-9439857 None:intergenic 25.0%
! TGATTGATCATTTACAGATA+TGG - chr1_2:9439848-9439867 Msa0054720:CDS 25.0%
! AAATGCTAATAACATCATCA+TGG + chr1_2:9439989-9440008 None:intergenic 25.0%
!!! AGCACTATTTTAATAGTGTT+TGG + chr1_2:9440101-9440120 None:intergenic 25.0%
! ATGTGATTGAGTGATAAATA+TGG - chr1_2:9440306-9440325 Msa0054720:five_prime_UTR 25.0%
!! GTTTTTACTTATGTACATGA+TGG - chr1_2:9440419-9440438 Msa0054720:five_prime_UTR 25.0%
AACCTAATAAAGCAAATGAG+CGG - chr1_2:9436104-9436123 Msa0054720:three_prime_UTR 30.0%
! ATGAGCCTATGGATTTTATA+GGG + chr1_2:9436376-9436395 None:intergenic 30.0%
! AATGAGCCTATGGATTTTAT+AGG + chr1_2:9436377-9436396 None:intergenic 30.0%
AAAACCATAATTGACAGCAA+GGG + chr1_2:9436614-9436633 None:intergenic 30.0%
AAAAACCATAATTGACAGCA+AGG + chr1_2:9436615-9436634 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr1_2:9436760-9436779 Msa0054720:intron 30.0%
!! GTTTTGATATCCTGTTACTT+AGG - chr1_2:9436938-9436957 Msa0054720:intron 30.0%
AATCACAAAACCTAAGTAAC+AGG + chr1_2:9436951-9436970 None:intergenic 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr1_2:9436993-9437012 Msa0054720:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG - chr1_2:9437041-9437060 Msa0054720:intron 30.0%
AAGTGAAGTTGAAATTGAGA+AGG - chr1_2:9437143-9437162 Msa0054720:CDS 30.0%
ACACACATCTTTAATCAGAA+AGG + chr1_2:9437295-9437314 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG - chr1_2:9437364-9437383 Msa0054720:intron 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG + chr1_2:9437595-9437614 None:intergenic 30.0%
CACAAGCAAATGTCAATATT+TGG - chr1_2:9437793-9437812 Msa0054720:intron 30.0%
!! ATACTTTTGTGTTTTTTGGC+AGG - chr1_2:9438011-9438030 Msa0054720:intron 30.0%
CCAAACAAATTAACACCTTT+AGG + chr1_2:9438140-9438159 None:intergenic 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG - chr1_2:9438137-9438156 Msa0054720:intron 30.0%
!! TTTCATTGATGATGGTAGTT+TGG - chr1_2:9438759-9438778 Msa0054720:CDS 30.0%
!! TTCATTGATGATGGTAGTTT+GGG - chr1_2:9438760-9438779 Msa0054720:CDS 30.0%
CCCCAATAGTTACAATTATT+TGG + chr1_2:9438828-9438847 None:intergenic 30.0%
!!! TTTAGTTAGTTTTGGGAGTT+TGG - chr1_2:9438963-9438982 Msa0054720:CDS 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG + chr1_2:9439159-9439178 None:intergenic 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG + chr1_2:9439323-9439342 None:intergenic 30.0%
CAAAAGAGTTACTGTAGTTT+GGG + chr1_2:9439352-9439371 None:intergenic 30.0%
TCAAAAGAGTTACTGTAGTT+TGG + chr1_2:9439353-9439372 None:intergenic 30.0%
! TATTTTGTCATGCAATGCTT+TGG - chr1_2:9439406-9439425 Msa0054720:intron 30.0%
AATGCTTTGGTATGACAATT+TGG - chr1_2:9439419-9439438 Msa0054720:intron 30.0%
AAGAATCAATGTAAGCAGAT+AGG + chr1_2:9439697-9439716 None:intergenic 30.0%
ACACTATTAAAATAGTGCTG+TGG - chr1_2:9440102-9440121 Msa0054720:five_prime_UTR 30.0%
! AAAATGGTCCTTTTCAAAGT+GGG + chr1_2:9440269-9440288 None:intergenic 30.0%
! AAAAATGGTCCTTTTCAAAG+TGG + chr1_2:9440270-9440289 None:intergenic 30.0%
CATGATGGTATGAAATTGTT+TGG - chr1_2:9440434-9440453 Msa0054720:five_prime_UTR 30.0%
AACCTAATAAAGCAAATGAG+CGG - chr1_2:9436104-9436123 Msa0054720:three_prime_UTR 30.0%
! ATGAGCCTATGGATTTTATA+GGG + chr1_2:9436376-9436395 None:intergenic 30.0%
! AATGAGCCTATGGATTTTAT+AGG + chr1_2:9436377-9436396 None:intergenic 30.0%
AAAACCATAATTGACAGCAA+GGG + chr1_2:9436614-9436633 None:intergenic 30.0%
AAAAACCATAATTGACAGCA+AGG + chr1_2:9436615-9436634 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr1_2:9436760-9436779 Msa0054720:intron 30.0%
!! GTTTTGATATCCTGTTACTT+AGG - chr1_2:9436938-9436957 Msa0054720:intron 30.0%
AATCACAAAACCTAAGTAAC+AGG + chr1_2:9436951-9436970 None:intergenic 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr1_2:9436993-9437012 Msa0054720:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG - chr1_2:9437041-9437060 Msa0054720:intron 30.0%
AAGTGAAGTTGAAATTGAGA+AGG - chr1_2:9437143-9437162 Msa0054720:CDS 30.0%
ACACACATCTTTAATCAGAA+AGG + chr1_2:9437295-9437314 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG - chr1_2:9437364-9437383 Msa0054720:intron 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG + chr1_2:9437595-9437614 None:intergenic 30.0%
CACAAGCAAATGTCAATATT+TGG - chr1_2:9437793-9437812 Msa0054720:intron 30.0%
!! ATACTTTTGTGTTTTTTGGC+AGG - chr1_2:9438011-9438030 Msa0054720:intron 30.0%
CCAAACAAATTAACACCTTT+AGG + chr1_2:9438140-9438159 None:intergenic 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG - chr1_2:9438137-9438156 Msa0054720:intron 30.0%
!! TTTCATTGATGATGGTAGTT+TGG - chr1_2:9438759-9438778 Msa0054720:CDS 30.0%
!! TTCATTGATGATGGTAGTTT+GGG - chr1_2:9438760-9438779 Msa0054720:CDS 30.0%
CCCCAATAGTTACAATTATT+TGG + chr1_2:9438828-9438847 None:intergenic 30.0%
!!! TTTAGTTAGTTTTGGGAGTT+TGG - chr1_2:9438963-9438982 Msa0054720:CDS 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG + chr1_2:9439159-9439178 None:intergenic 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG + chr1_2:9439323-9439342 None:intergenic 30.0%
CAAAAGAGTTACTGTAGTTT+GGG + chr1_2:9439352-9439371 None:intergenic 30.0%
TCAAAAGAGTTACTGTAGTT+TGG + chr1_2:9439353-9439372 None:intergenic 30.0%
! TATTTTGTCATGCAATGCTT+TGG - chr1_2:9439406-9439425 Msa0054720:intron 30.0%
AATGCTTTGGTATGACAATT+TGG - chr1_2:9439419-9439438 Msa0054720:intron 30.0%
AAGAATCAATGTAAGCAGAT+AGG + chr1_2:9439697-9439716 None:intergenic 30.0%
ACACTATTAAAATAGTGCTG+TGG - chr1_2:9440102-9440121 Msa0054720:five_prime_UTR 30.0%
! AAAATGGTCCTTTTCAAAGT+GGG + chr1_2:9440269-9440288 None:intergenic 30.0%
! AAAAATGGTCCTTTTCAAAG+TGG + chr1_2:9440270-9440289 None:intergenic 30.0%
CATGATGGTATGAAATTGTT+TGG - chr1_2:9440434-9440453 Msa0054720:five_prime_UTR 30.0%
TGCTTCAAAAAAAAGGCAAG+AGG - chr1_2:9436019-9436038 Msa0054720:three_prime_UTR 35.0%
CAAAAAAAAGGCAAGAGGAT+AGG - chr1_2:9436024-9436043 Msa0054720:three_prime_UTR 35.0%
CAAGAGGATAGGAATGAAAT+TGG - chr1_2:9436035-9436054 Msa0054720:three_prime_UTR 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - chr1_2:9436057-9436076 Msa0054720:three_prime_UTR 35.0%
ACCTAATAAAGCAAATGAGC+GGG - chr1_2:9436105-9436124 Msa0054720:three_prime_UTR 35.0%
CAAATGAGCGGGAAAAAATT+AGG - chr1_2:9436116-9436135 Msa0054720:three_prime_UTR 35.0%
ACATCCCCTATAAAATCCAT+AGG - chr1_2:9436368-9436387 Msa0054720:three_prime_UTR 35.0%
! TGAGCCTATGGATTTTATAG+GGG + chr1_2:9436375-9436394 None:intergenic 35.0%
GTTGCAATTCCAAATTCTTG+GGG + chr1_2:9436405-9436424 None:intergenic 35.0%
GGTTGCAATTCCAAATTCTT+GGG + chr1_2:9436406-9436425 None:intergenic 35.0%
!! TGAGATTCTGAAGTTGACAT+TGG + chr1_2:9436454-9436473 None:intergenic 35.0%
!! TTTGTTTCTGATGACAGTGT+CGG + chr1_2:9436481-9436500 None:intergenic 35.0%
AAACCATAATTGACAGCAAG+GGG + chr1_2:9436613-9436632 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG - chr1_2:9437058-9437077 Msa0054720:intron 35.0%
GAAACTGTATTGTGTGAGTA+AGG - chr1_2:9437080-9437099 Msa0054720:CDS 35.0%
CACCATCAACATTCATGTAA+GGG + chr1_2:9437354-9437373 None:intergenic 35.0%
TCACCATCAACATTCATGTA+AGG + chr1_2:9437355-9437374 None:intergenic 35.0%
!! TGGAAAATTCCTTGATTTGC+TGG + chr1_2:9437464-9437483 None:intergenic 35.0%
CAGAAGATTCCTTTACTCAT+AGG - chr1_2:9437857-9437876 Msa0054720:intron 35.0%
TACAGGTCTTGATGTTGAAA+TGG - chr1_2:9437894-9437913 Msa0054720:intron 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG - chr1_2:9437970-9437989 Msa0054720:intron 35.0%
!!! TTGTGTTTTTTGGCAGGTTA+TGG - chr1_2:9438017-9438036 Msa0054720:intron 35.0%
GAAGATACTGCACATTCATA+GGG + chr1_2:9438301-9438320 None:intergenic 35.0%
AGTATCTTCCAAATACTCTG+CGG - chr1_2:9438312-9438331 Msa0054720:intron 35.0%
CAAATGTGATAGGATGATGA+TGG - chr1_2:9438420-9438439 Msa0054720:intron 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG - chr1_2:9438479-9438498 Msa0054720:intron 35.0%
GAAAATGTACTTGGGTAAAC+AGG - chr1_2:9438680-9438699 Msa0054720:CDS 35.0%
!! TCATTGATGATGGTAGTTTG+GGG - chr1_2:9438761-9438780 Msa0054720:CDS 35.0%
CAAGTTAGTGACACTTGTTT+AGG - chr1_2:9438898-9438917 Msa0054720:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG - chr1_2:9438917-9438936 Msa0054720:intron 35.0%
GGAATTCCTCAACAATAGTT+AGG + chr1_2:9438926-9438945 None:intergenic 35.0%
AACTATTGTTGAGGAATTCC+TGG - chr1_2:9438926-9438945 Msa0054720:intron 35.0%
ACTATTGTTGAGGAATTCCT+GGG - chr1_2:9438927-9438946 Msa0054720:intron 35.0%
TAAAAGAGGAAAAATACCCC+AGG + chr1_2:9438947-9438966 None:intergenic 35.0%
CTCCCAAAACTAACTAAAAG+AGG + chr1_2:9438961-9438980 None:intergenic 35.0%
! GAGTAATGATTTTGCTTTGC+AGG - chr1_2:9439072-9439091 Msa0054720:intron 35.0%
TCAGTATTCAAGTCACCAAA+AGG + chr1_2:9439118-9439137 None:intergenic 35.0%
ACTTGAATACTGAAGCAGAA+AGG - chr1_2:9439125-9439144 Msa0054720:intron 35.0%
! TAAAATGGTCTTACAGCCAA+CGG + chr1_2:9439308-9439327 None:intergenic 35.0%
! TCTTTTGATGTCTTCATTCG+AGG - chr1_2:9439365-9439384 Msa0054720:CDS 35.0%
! GCACGCAATTAATCATGTTT+TGG - chr1_2:9439443-9439462 Msa0054720:intron 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG - chr1_2:9439496-9439515 Msa0054720:intron 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG - chr1_2:9439497-9439516 Msa0054720:intron 35.0%
TTAGGTGAGGAGATAATATC+AGG - chr1_2:9439557-9439576 Msa0054720:CDS 35.0%
! TATCCACATGCCTGAATTTT+TGG - chr1_2:9439589-9439608 Msa0054720:CDS 35.0%
CTGAAAGAATCAATGTAAGC+AGG + chr1_2:9439656-9439675 None:intergenic 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr1_2:9439654-9439673 Msa0054720:CDS 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr1_2:9439654-9439673 Msa0054720:CDS 35.0%
ACAAAGACATTGAACACGAT+AGG + chr1_2:9439742-9439761 None:intergenic 35.0%
CTTTGTTAATACGGGTGTTT+AGG - chr1_2:9439756-9439775 Msa0054720:CDS 35.0%
! AAGTAAGTCCAAGGCATTAT+TGG + chr1_2:9440076-9440095 None:intergenic 35.0%
TGTTTGGAAAAGTAAGTCCA+AGG + chr1_2:9440085-9440104 None:intergenic 35.0%
! TTCTATTTTCACCGTCAACT+TGG - chr1_2:9440137-9440156 Msa0054720:five_prime_UTR 35.0%
! TTAAGATCTTTAGGAGCTGA+TGG - chr1_2:9440393-9440412 Msa0054720:five_prime_UTR 35.0%
TGCTTCAAAAAAAAGGCAAG+AGG - chr1_2:9436019-9436038 Msa0054720:three_prime_UTR 35.0%
CAAAAAAAAGGCAAGAGGAT+AGG - chr1_2:9436024-9436043 Msa0054720:three_prime_UTR 35.0%
CAAGAGGATAGGAATGAAAT+TGG - chr1_2:9436035-9436054 Msa0054720:three_prime_UTR 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - chr1_2:9436057-9436076 Msa0054720:three_prime_UTR 35.0%
ACCTAATAAAGCAAATGAGC+GGG - chr1_2:9436105-9436124 Msa0054720:three_prime_UTR 35.0%
CAAATGAGCGGGAAAAAATT+AGG - chr1_2:9436116-9436135 Msa0054720:three_prime_UTR 35.0%
ACATCCCCTATAAAATCCAT+AGG - chr1_2:9436368-9436387 Msa0054720:three_prime_UTR 35.0%
! TGAGCCTATGGATTTTATAG+GGG + chr1_2:9436375-9436394 None:intergenic 35.0%
GTTGCAATTCCAAATTCTTG+GGG + chr1_2:9436405-9436424 None:intergenic 35.0%
GGTTGCAATTCCAAATTCTT+GGG + chr1_2:9436406-9436425 None:intergenic 35.0%
!! TGAGATTCTGAAGTTGACAT+TGG + chr1_2:9436454-9436473 None:intergenic 35.0%
!! TTTGTTTCTGATGACAGTGT+CGG + chr1_2:9436481-9436500 None:intergenic 35.0%
AAACCATAATTGACAGCAAG+GGG + chr1_2:9436613-9436632 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG - chr1_2:9437058-9437077 Msa0054720:intron 35.0%
GAAACTGTATTGTGTGAGTA+AGG - chr1_2:9437080-9437099 Msa0054720:CDS 35.0%
CACCATCAACATTCATGTAA+GGG + chr1_2:9437354-9437373 None:intergenic 35.0%
TCACCATCAACATTCATGTA+AGG + chr1_2:9437355-9437374 None:intergenic 35.0%
!! TGGAAAATTCCTTGATTTGC+TGG + chr1_2:9437464-9437483 None:intergenic 35.0%
CAGAAGATTCCTTTACTCAT+AGG - chr1_2:9437857-9437876 Msa0054720:intron 35.0%
TACAGGTCTTGATGTTGAAA+TGG - chr1_2:9437894-9437913 Msa0054720:intron 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG - chr1_2:9437970-9437989 Msa0054720:intron 35.0%
!!! TTGTGTTTTTTGGCAGGTTA+TGG - chr1_2:9438017-9438036 Msa0054720:intron 35.0%
GAAGATACTGCACATTCATA+GGG + chr1_2:9438301-9438320 None:intergenic 35.0%
AGTATCTTCCAAATACTCTG+CGG - chr1_2:9438312-9438331 Msa0054720:intron 35.0%
CAAATGTGATAGGATGATGA+TGG - chr1_2:9438420-9438439 Msa0054720:intron 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG - chr1_2:9438479-9438498 Msa0054720:intron 35.0%
GAAAATGTACTTGGGTAAAC+AGG - chr1_2:9438680-9438699 Msa0054720:CDS 35.0%
!! TCATTGATGATGGTAGTTTG+GGG - chr1_2:9438761-9438780 Msa0054720:CDS 35.0%
CAAGTTAGTGACACTTGTTT+AGG - chr1_2:9438898-9438917 Msa0054720:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG - chr1_2:9438917-9438936 Msa0054720:intron 35.0%
GGAATTCCTCAACAATAGTT+AGG + chr1_2:9438926-9438945 None:intergenic 35.0%
AACTATTGTTGAGGAATTCC+TGG - chr1_2:9438926-9438945 Msa0054720:intron 35.0%
ACTATTGTTGAGGAATTCCT+GGG - chr1_2:9438927-9438946 Msa0054720:intron 35.0%
TAAAAGAGGAAAAATACCCC+AGG + chr1_2:9438947-9438966 None:intergenic 35.0%
CTCCCAAAACTAACTAAAAG+AGG + chr1_2:9438961-9438980 None:intergenic 35.0%
! GAGTAATGATTTTGCTTTGC+AGG - chr1_2:9439072-9439091 Msa0054720:intron 35.0%
TCAGTATTCAAGTCACCAAA+AGG + chr1_2:9439118-9439137 None:intergenic 35.0%
ACTTGAATACTGAAGCAGAA+AGG - chr1_2:9439125-9439144 Msa0054720:intron 35.0%
! TAAAATGGTCTTACAGCCAA+CGG + chr1_2:9439308-9439327 None:intergenic 35.0%
! TCTTTTGATGTCTTCATTCG+AGG - chr1_2:9439365-9439384 Msa0054720:CDS 35.0%
! GCACGCAATTAATCATGTTT+TGG - chr1_2:9439443-9439462 Msa0054720:intron 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG - chr1_2:9439496-9439515 Msa0054720:intron 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG - chr1_2:9439497-9439516 Msa0054720:intron 35.0%
TTAGGTGAGGAGATAATATC+AGG - chr1_2:9439557-9439576 Msa0054720:CDS 35.0%
! TATCCACATGCCTGAATTTT+TGG - chr1_2:9439589-9439608 Msa0054720:CDS 35.0%
CTGAAAGAATCAATGTAAGC+AGG + chr1_2:9439656-9439675 None:intergenic 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr1_2:9439654-9439673 Msa0054720:CDS 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr1_2:9439654-9439673 Msa0054720:CDS 35.0%
ACAAAGACATTGAACACGAT+AGG + chr1_2:9439742-9439761 None:intergenic 35.0%
CTTTGTTAATACGGGTGTTT+AGG - chr1_2:9439756-9439775 Msa0054720:CDS 35.0%
! AAGTAAGTCCAAGGCATTAT+TGG + chr1_2:9440076-9440095 None:intergenic 35.0%
TGTTTGGAAAAGTAAGTCCA+AGG + chr1_2:9440085-9440104 None:intergenic 35.0%
! TTCTATTTTCACCGTCAACT+TGG - chr1_2:9440137-9440156 Msa0054720:five_prime_UTR 35.0%
! TTAAGATCTTTAGGAGCTGA+TGG - chr1_2:9440393-9440412 Msa0054720:five_prime_UTR 35.0%
! TCCCGCTCATTTGCTTTATT+AGG + chr1_2:9436109-9436128 None:intergenic 40.0%
CATTGATGTCCCCAAGAATT+TGG - chr1_2:9436393-9436412 Msa0054720:three_prime_UTR 40.0%
GGGTTGCAATTCCAAATTCT+TGG + chr1_2:9436407-9436426 None:intergenic 40.0%
AAGTTGACATTGGAGGTTTC+CGG + chr1_2:9436444-9436463 None:intergenic 40.0%
!! GATTCTGAAGTTGACATTGG+AGG + chr1_2:9436451-9436470 None:intergenic 40.0%
AACCATAATTGACAGCAAGG+GGG + chr1_2:9436612-9436631 None:intergenic 40.0%
CGATTCACTAGAGAACAATC+CGG - chr1_2:9436684-9436703 Msa0054720:intron 40.0%
CAACATCGACAATAGACTCA+CGG + chr1_2:9436864-9436883 None:intergenic 40.0%
GAGTCTATTGTCGATGTTGA+AGG - chr1_2:9436865-9436884 Msa0054720:CDS 40.0%
TATTGTCGATGTTGAAGGTG+TGG - chr1_2:9436870-9436889 Msa0054720:CDS 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr1_2:9436913-9436932 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr1_2:9436912-9436931 Msa0054720:intron 40.0%
ATCAAAACCAACCTGTTGTG+AGG + chr1_2:9436926-9436945 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG + chr1_2:9437074-9437093 None:intergenic 40.0%
ATTAAACGGCAGAGTAGGAA+TGG + chr1_2:9437106-9437125 None:intergenic 40.0%
TCGATATTAAACGGCAGAGT+AGG + chr1_2:9437111-9437130 None:intergenic 40.0%
! TACTCTGCCGTTTAATATCG+AGG - chr1_2:9437110-9437129 Msa0054720:CDS 40.0%
GCAGCATCCTCGATATTAAA+CGG + chr1_2:9437120-9437139 None:intergenic 40.0%
TGAAATTGAGAAGGCCATTC+AGG - chr1_2:9437152-9437171 Msa0054720:CDS 40.0%
CTACAATCAAGATGAGAGTG+TGG - chr1_2:9437227-9437246 Msa0054720:intron 40.0%
CTCCCTTACATGAATGTTGA+TGG - chr1_2:9437349-9437368 Msa0054720:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG - chr1_2:9437370-9437389 Msa0054720:intron 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG - chr1_2:9437374-9437393 Msa0054720:intron 40.0%
! ACAACTTGTTCGTGTGAATC+AGG - chr1_2:9437400-9437419 Msa0054720:intron 40.0%
TTACAGTTCCAACTTGAGAC+TGG + chr1_2:9437490-9437509 None:intergenic 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG - chr1_2:9437561-9437580 Msa0054720:intron 40.0%
! ATGCATTTTGCGGTGTGATA+CGG - chr1_2:9437616-9437635 Msa0054720:intron 40.0%
CTAGATCCAGCAATCAACTT+AGG + chr1_2:9437700-9437719 None:intergenic 40.0%
TTGATTGCTGGATCTAGTGA+GGG - chr1_2:9437703-9437722 Msa0054720:intron 40.0%
TCTTTAGGCTGGACTACAAA+GGG - chr1_2:9437737-9437756 Msa0054720:intron 40.0%
GACATTTGCTTGTGAAGTTG+AGG + chr1_2:9437787-9437806 None:intergenic 40.0%
!!! TTTCGCCGTGTTTTTGAGAT+TGG - chr1_2:9437820-9437839 Msa0054720:intron 40.0%
CAGCACCAATCTCAAAAACA+CGG + chr1_2:9437828-9437847 None:intergenic 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG - chr1_2:9437969-9437988 Msa0054720:intron 40.0%
! AACACCTTTAGGGGTTCAAA+CGG + chr1_2:9438129-9438148 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG + chr1_2:9438302-9438321 None:intergenic 40.0%
! TATGTAAGCCGCAGAGTATT+TGG + chr1_2:9438323-9438342 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG - chr1_2:9438346-9438365 Msa0054720:CDS 40.0%
!! ATGTGATAGGATGATGATGG+CGG - chr1_2:9438423-9438442 Msa0054720:intron 40.0%
GACAGGGATAAAAGACGTAA+AGG + chr1_2:9438457-9438476 None:intergenic 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG - chr1_2:9438499-9438518 Msa0054720:intron 40.0%
CTATTGTTGAGGAATTCCTG+GGG - chr1_2:9438928-9438947 Msa0054720:intron 40.0%
TCATTACTCGCTGCTAAACA+AGG + chr1_2:9439061-9439080 None:intergenic 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG - chr1_2:9439079-9439098 Msa0054720:intron 40.0%
! GGAGTAGAGATTGAACCTTT+TGG - chr1_2:9439100-9439119 Msa0054720:intron 40.0%
ACTGAAGCAGAAAGGAAACT+AGG - chr1_2:9439133-9439152 Msa0054720:intron 40.0%
CAGAGTTCTATATCCTTCAC+CGG - chr1_2:9439279-9439298 Msa0054720:intron 40.0%
! AAAATGGTCTTACAGCCAAC+GGG + chr1_2:9439307-9439326 None:intergenic 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG + chr1_2:9439338-9439357 None:intergenic 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG + chr1_2:9439500-9439519 None:intergenic 40.0%
! CTATGCAATCCTTGTTGCTT+AGG - chr1_2:9439539-9439558 Msa0054720:CDS 40.0%
CTTCCAAAAATTCAGGCATG+TGG + chr1_2:9439595-9439614 None:intergenic 40.0%
GCACGTTCTTCCAAAAATTC+AGG + chr1_2:9439602-9439621 None:intergenic 40.0%
ATGCAGTTCTATATGAAGCG+GGG + chr1_2:9440226-9440245 None:intergenic 40.0%
CATGCAGTTCTATATGAAGC+GGG + chr1_2:9440227-9440246 None:intergenic 40.0%
GCATGCAGTTCTATATGAAG+CGG + chr1_2:9440228-9440247 None:intergenic 40.0%
! TCCCGCTCATTTGCTTTATT+AGG + chr1_2:9436109-9436128 None:intergenic 40.0%
CATTGATGTCCCCAAGAATT+TGG - chr1_2:9436393-9436412 Msa0054720:three_prime_UTR 40.0%
GGGTTGCAATTCCAAATTCT+TGG + chr1_2:9436407-9436426 None:intergenic 40.0%
AAGTTGACATTGGAGGTTTC+CGG + chr1_2:9436444-9436463 None:intergenic 40.0%
!! GATTCTGAAGTTGACATTGG+AGG + chr1_2:9436451-9436470 None:intergenic 40.0%
AACCATAATTGACAGCAAGG+GGG + chr1_2:9436612-9436631 None:intergenic 40.0%
CGATTCACTAGAGAACAATC+CGG - chr1_2:9436684-9436703 Msa0054720:intron 40.0%
CAACATCGACAATAGACTCA+CGG + chr1_2:9436864-9436883 None:intergenic 40.0%
GAGTCTATTGTCGATGTTGA+AGG - chr1_2:9436865-9436884 Msa0054720:CDS 40.0%
TATTGTCGATGTTGAAGGTG+TGG - chr1_2:9436870-9436889 Msa0054720:CDS 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr1_2:9436913-9436932 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr1_2:9436912-9436931 Msa0054720:intron 40.0%
ATCAAAACCAACCTGTTGTG+AGG + chr1_2:9436926-9436945 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG + chr1_2:9437074-9437093 None:intergenic 40.0%
ATTAAACGGCAGAGTAGGAA+TGG + chr1_2:9437106-9437125 None:intergenic 40.0%
TCGATATTAAACGGCAGAGT+AGG + chr1_2:9437111-9437130 None:intergenic 40.0%
! TACTCTGCCGTTTAATATCG+AGG - chr1_2:9437110-9437129 Msa0054720:CDS 40.0%
GCAGCATCCTCGATATTAAA+CGG + chr1_2:9437120-9437139 None:intergenic 40.0%
TGAAATTGAGAAGGCCATTC+AGG - chr1_2:9437152-9437171 Msa0054720:CDS 40.0%
CTACAATCAAGATGAGAGTG+TGG - chr1_2:9437227-9437246 Msa0054720:intron 40.0%
CTCCCTTACATGAATGTTGA+TGG - chr1_2:9437349-9437368 Msa0054720:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG - chr1_2:9437370-9437389 Msa0054720:intron 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG - chr1_2:9437374-9437393 Msa0054720:intron 40.0%
! ACAACTTGTTCGTGTGAATC+AGG - chr1_2:9437400-9437419 Msa0054720:intron 40.0%
TTACAGTTCCAACTTGAGAC+TGG + chr1_2:9437490-9437509 None:intergenic 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG - chr1_2:9437561-9437580 Msa0054720:intron 40.0%
! ATGCATTTTGCGGTGTGATA+CGG - chr1_2:9437616-9437635 Msa0054720:intron 40.0%
CTAGATCCAGCAATCAACTT+AGG + chr1_2:9437700-9437719 None:intergenic 40.0%
TTGATTGCTGGATCTAGTGA+GGG - chr1_2:9437703-9437722 Msa0054720:intron 40.0%
TCTTTAGGCTGGACTACAAA+GGG - chr1_2:9437737-9437756 Msa0054720:intron 40.0%
GACATTTGCTTGTGAAGTTG+AGG + chr1_2:9437787-9437806 None:intergenic 40.0%
!!! TTTCGCCGTGTTTTTGAGAT+TGG - chr1_2:9437820-9437839 Msa0054720:intron 40.0%
CAGCACCAATCTCAAAAACA+CGG + chr1_2:9437828-9437847 None:intergenic 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG - chr1_2:9437969-9437988 Msa0054720:intron 40.0%
! AACACCTTTAGGGGTTCAAA+CGG + chr1_2:9438129-9438148 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG + chr1_2:9438302-9438321 None:intergenic 40.0%
! TATGTAAGCCGCAGAGTATT+TGG + chr1_2:9438323-9438342 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG - chr1_2:9438346-9438365 Msa0054720:CDS 40.0%
!! ATGTGATAGGATGATGATGG+CGG - chr1_2:9438423-9438442 Msa0054720:intron 40.0%
GACAGGGATAAAAGACGTAA+AGG + chr1_2:9438457-9438476 None:intergenic 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG - chr1_2:9438499-9438518 Msa0054720:intron 40.0%
CTATTGTTGAGGAATTCCTG+GGG - chr1_2:9438928-9438947 Msa0054720:intron 40.0%
TCATTACTCGCTGCTAAACA+AGG + chr1_2:9439061-9439080 None:intergenic 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG - chr1_2:9439079-9439098 Msa0054720:intron 40.0%
! GGAGTAGAGATTGAACCTTT+TGG - chr1_2:9439100-9439119 Msa0054720:intron 40.0%
ACTGAAGCAGAAAGGAAACT+AGG - chr1_2:9439133-9439152 Msa0054720:intron 40.0%
CAGAGTTCTATATCCTTCAC+CGG - chr1_2:9439279-9439298 Msa0054720:intron 40.0%
! AAAATGGTCTTACAGCCAAC+GGG + chr1_2:9439307-9439326 None:intergenic 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG + chr1_2:9439338-9439357 None:intergenic 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG + chr1_2:9439500-9439519 None:intergenic 40.0%
! CTATGCAATCCTTGTTGCTT+AGG - chr1_2:9439539-9439558 Msa0054720:CDS 40.0%
CTTCCAAAAATTCAGGCATG+TGG + chr1_2:9439595-9439614 None:intergenic 40.0%
GCACGTTCTTCCAAAAATTC+AGG + chr1_2:9439602-9439621 None:intergenic 40.0%
ATGCAGTTCTATATGAAGCG+GGG + chr1_2:9440226-9440245 None:intergenic 40.0%
CATGCAGTTCTATATGAAGC+GGG + chr1_2:9440227-9440246 None:intergenic 40.0%
GCATGCAGTTCTATATGAAG+CGG + chr1_2:9440228-9440247 None:intergenic 40.0%
AACCCTAGCAATACCTTCTC+CGG - chr1_2:9436422-9436441 Msa0054720:three_prime_UTR 45.0%
!! TTCCGGAGAAGGTATTGCTA+GGG + chr1_2:9436427-9436446 None:intergenic 45.0%
!! TTTCCGGAGAAGGTATTGCT+AGG + chr1_2:9436428-9436447 None:intergenic 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr1_2:9436501-9436520 Msa0054720:CDS 45.0%
ATCGTTGAGAGCCTCAACTA+GGG + chr1_2:9436668-9436687 None:intergenic 45.0%
AATCGTTGAGAGCCTCAACT+AGG + chr1_2:9436669-9436688 None:intergenic 45.0%
! AACAATCCGGTTCTAATCCG+TGG - chr1_2:9436697-9436716 Msa0054720:intron 45.0%
! ACAATCCGGTTCTAATCCGT+GGG - chr1_2:9436698-9436717 Msa0054720:intron 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr1_2:9436725-9436744 Msa0054720:intron 45.0%
AATGCCATCTTCTTCCCAAC+TGG + chr1_2:9436742-9436761 None:intergenic 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr1_2:9436817-9436836 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr1_2:9436816-9436835 Msa0054720:CDS 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr1_2:9436899-9436918 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr1_2:9436898-9436917 Msa0054720:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr1_2:9436908-9436927 None:intergenic 45.0%
CATGTAAGGGAGACAAGTTC+CGG + chr1_2:9437341-9437360 None:intergenic 45.0%
TTCCACATCCAGTCTCAAGT+TGG - chr1_2:9437479-9437498 Msa0054720:intron 45.0%
TTCCAACTTGAGACTGGATG+TGG + chr1_2:9437484-9437503 None:intergenic 45.0%
CAGCAATCAACTTAGGAGTG+TGG + chr1_2:9437693-9437712 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG - chr1_2:9437691-9437710 Msa0054720:intron 45.0%
GTTGATTGCTGGATCTAGTG+AGG - chr1_2:9437702-9437721 Msa0054720:intron 45.0%
GTCTTTAGGCTGGACTACAA+AGG - chr1_2:9437736-9437755 Msa0054720:intron 45.0%
GCACAGATGCCTATGAGTAA+AGG + chr1_2:9437869-9437888 None:intergenic 45.0%
TAAGAAGGATCTCGAAGCTG+TGG - chr1_2:9438092-9438111 Msa0054720:CDS 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG + chr1_2:9438128-9438147 None:intergenic 45.0%
CTGCGGCTTACATATGAAGA+AGG - chr1_2:9438329-9438348 Msa0054720:CDS 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG - chr1_2:9438498-9438517 Msa0054720:intron 45.0%
! CAATCCTTGTTGCTTAGGTG+AGG - chr1_2:9439544-9439563 Msa0054720:CDS 45.0%
ATCTCCTCACCTAAGCAACA+AGG + chr1_2:9439551-9439570 None:intergenic 45.0%
ATAACCAGAGCTCAGCAAGA+GGG + chr1_2:9439786-9439805 None:intergenic 45.0%
TATAACCAGAGCTCAGCAAG+AGG + chr1_2:9439787-9439806 None:intergenic 45.0%
AGATATGGTGTACCACCACA+CGG - chr1_2:9439863-9439882 Msa0054720:CDS 45.0%
CGTGTAGTAATGCTCTTCTG+TGG - chr1_2:9439908-9439927 Msa0054720:CDS 45.0%
ATCATGGTGCAATCCTGAGT+GGG + chr1_2:9439973-9439992 None:intergenic 45.0%
TCAGGCTTCAGTTGAATGTG+AGG + chr1_2:9440038-9440057 None:intergenic 45.0%
CACATTCAACTGAAGCCTGA+AGG - chr1_2:9440038-9440057 Msa0054720:five_prime_UTR 45.0%
! TAACACCAGCTCCAAGTTGA+CGG + chr1_2:9440151-9440170 None:intergenic 45.0%
! TCACCACACCCACTTTGAAA+AGG - chr1_2:9440258-9440277 Msa0054720:five_prime_UTR 45.0%
AACCCTAGCAATACCTTCTC+CGG - chr1_2:9436422-9436441 Msa0054720:three_prime_UTR 45.0%
!! TTCCGGAGAAGGTATTGCTA+GGG + chr1_2:9436427-9436446 None:intergenic 45.0%
!! TTTCCGGAGAAGGTATTGCT+AGG + chr1_2:9436428-9436447 None:intergenic 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr1_2:9436501-9436520 Msa0054720:CDS 45.0%
ATCGTTGAGAGCCTCAACTA+GGG + chr1_2:9436668-9436687 None:intergenic 45.0%
AATCGTTGAGAGCCTCAACT+AGG + chr1_2:9436669-9436688 None:intergenic 45.0%
! AACAATCCGGTTCTAATCCG+TGG - chr1_2:9436697-9436716 Msa0054720:intron 45.0%
! ACAATCCGGTTCTAATCCGT+GGG - chr1_2:9436698-9436717 Msa0054720:intron 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr1_2:9436725-9436744 Msa0054720:intron 45.0%
AATGCCATCTTCTTCCCAAC+TGG + chr1_2:9436742-9436761 None:intergenic 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr1_2:9436817-9436836 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr1_2:9436816-9436835 Msa0054720:CDS 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr1_2:9436899-9436918 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr1_2:9436898-9436917 Msa0054720:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr1_2:9436908-9436927 None:intergenic 45.0%
CATGTAAGGGAGACAAGTTC+CGG + chr1_2:9437341-9437360 None:intergenic 45.0%
TTCCACATCCAGTCTCAAGT+TGG - chr1_2:9437479-9437498 Msa0054720:intron 45.0%
TTCCAACTTGAGACTGGATG+TGG + chr1_2:9437484-9437503 None:intergenic 45.0%
CAGCAATCAACTTAGGAGTG+TGG + chr1_2:9437693-9437712 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG - chr1_2:9437691-9437710 Msa0054720:intron 45.0%
GTTGATTGCTGGATCTAGTG+AGG - chr1_2:9437702-9437721 Msa0054720:intron 45.0%
GTCTTTAGGCTGGACTACAA+AGG - chr1_2:9437736-9437755 Msa0054720:intron 45.0%
GCACAGATGCCTATGAGTAA+AGG + chr1_2:9437869-9437888 None:intergenic 45.0%
TAAGAAGGATCTCGAAGCTG+TGG - chr1_2:9438092-9438111 Msa0054720:CDS 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG + chr1_2:9438128-9438147 None:intergenic 45.0%
CTGCGGCTTACATATGAAGA+AGG - chr1_2:9438329-9438348 Msa0054720:CDS 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG - chr1_2:9438498-9438517 Msa0054720:intron 45.0%
! CAATCCTTGTTGCTTAGGTG+AGG - chr1_2:9439544-9439563 Msa0054720:CDS 45.0%
ATCTCCTCACCTAAGCAACA+AGG + chr1_2:9439551-9439570 None:intergenic 45.0%
ATAACCAGAGCTCAGCAAGA+GGG + chr1_2:9439786-9439805 None:intergenic 45.0%
TATAACCAGAGCTCAGCAAG+AGG + chr1_2:9439787-9439806 None:intergenic 45.0%
AGATATGGTGTACCACCACA+CGG - chr1_2:9439863-9439882 Msa0054720:CDS 45.0%
CGTGTAGTAATGCTCTTCTG+TGG - chr1_2:9439908-9439927 Msa0054720:CDS 45.0%
ATCATGGTGCAATCCTGAGT+GGG + chr1_2:9439973-9439992 None:intergenic 45.0%
TCAGGCTTCAGTTGAATGTG+AGG + chr1_2:9440038-9440057 None:intergenic 45.0%
CACATTCAACTGAAGCCTGA+AGG - chr1_2:9440038-9440057 Msa0054720:five_prime_UTR 45.0%
! TAACACCAGCTCCAAGTTGA+CGG + chr1_2:9440151-9440170 None:intergenic 45.0%
! TCACCACACCCACTTTGAAA+AGG - chr1_2:9440258-9440277 Msa0054720:five_prime_UTR 45.0%
TGGGGACATCAATGAGCCTA+TGG + chr1_2:9436387-9436406 None:intergenic 50.0%
ACATTGGAGGTTTCCGGAGA+AGG + chr1_2:9436438-9436457 None:intergenic 50.0%
CTTTGCGAGTTCCTTCTTGG+AGG + chr1_2:9436515-9436534 None:intergenic 50.0%
CAGCTTTGCGAGTTCCTTCT+TGG + chr1_2:9436518-9436537 None:intergenic 50.0%
CAAGAAGGAACTCGCAAAGC+TGG - chr1_2:9436516-9436535 Msa0054720:CDS 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr1_2:9436578-9436597 None:intergenic 50.0%
! GACCCCCTTGCTGTCAATTA+TGG - chr1_2:9436607-9436626 Msa0054720:intron 50.0%
TCGTTAGGGAGCTCAATGAG+CGG + chr1_2:9436640-9436659 None:intergenic 50.0%
TCATTGAGCTCCCTAACGAC+TGG - chr1_2:9436641-9436660 Msa0054720:intron 50.0%
CAACTAGGGTCCAGTCGTTA+GGG + chr1_2:9436654-9436673 None:intergenic 50.0%
TCAACTAGGGTCCAGTCGTT+AGG + chr1_2:9436655-9436674 None:intergenic 50.0%
TAACGACTGGACCCTAGTTG+AGG - chr1_2:9436654-9436673 Msa0054720:intron 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr1_2:9436724-9436743 Msa0054720:intron 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr1_2:9436735-9436754 Msa0054720:intron 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr1_2:9436780-9436799 Msa0054720:intron 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr1_2:9436791-9436810 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr1_2:9436832-9436851 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG + chr1_2:9436854-9436873 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr1_2:9436916-9436935 Msa0054720:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG + chr1_2:9437454-9437473 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG - chr1_2:9437452-9437471 Msa0054720:intron 50.0%
TTTGCGGTGTGATACGGTGT+TGG - chr1_2:9437622-9437641 Msa0054720:intron 50.0%
TTGCGGTGTGATACGGTGTT+GGG - chr1_2:9437623-9437642 Msa0054720:intron 50.0%
ATTGCTGGATCTAGTGAGGG+TGG - chr1_2:9437706-9437725 Msa0054720:intron 50.0%
AGGCATCTGTGCGAGTTTAC+AGG - chr1_2:9437877-9437896 Msa0054720:intron 50.0%
GTACCCGTTTGAACCCCTAA+AGG - chr1_2:9438122-9438141 Msa0054720:CDS 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG - chr1_2:9438494-9438513 Msa0054720:intron 50.0%
AGAAAGGAAACTAGGCCAGC+TGG - chr1_2:9439141-9439160 Msa0054720:intron 50.0%
GAAGAACGTGCACAAGCTTG+CGG - chr1_2:9439611-9439630 Msa0054720:CDS 50.0%
TAACCAGAGCTCAGCAAGAG+GGG + chr1_2:9439785-9439804 None:intergenic 50.0%
! TTTTTCCACGTGACCCACTC+AGG - chr1_2:9439957-9439976 Msa0054720:CDS 50.0%
CATCATGGTGCAATCCTGAG+TGG + chr1_2:9439974-9439993 None:intergenic 50.0%
GCTTGACGCCAATAATGCCT+TGG - chr1_2:9440065-9440084 Msa0054720:five_prime_UTR 50.0%
TTTCACCGTCAACTTGGAGC+TGG - chr1_2:9440143-9440162 Msa0054720:five_prime_UTR 50.0%
! GGTCCTTTTCAAAGTGGGTG+TGG + chr1_2:9440264-9440283 None:intergenic 50.0%
TGGGGACATCAATGAGCCTA+TGG + chr1_2:9436387-9436406 None:intergenic 50.0%
ACATTGGAGGTTTCCGGAGA+AGG + chr1_2:9436438-9436457 None:intergenic 50.0%
CTTTGCGAGTTCCTTCTTGG+AGG + chr1_2:9436515-9436534 None:intergenic 50.0%
CAGCTTTGCGAGTTCCTTCT+TGG + chr1_2:9436518-9436537 None:intergenic 50.0%
CAAGAAGGAACTCGCAAAGC+TGG - chr1_2:9436516-9436535 Msa0054720:CDS 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr1_2:9436578-9436597 None:intergenic 50.0%
! GACCCCCTTGCTGTCAATTA+TGG - chr1_2:9436607-9436626 Msa0054720:intron 50.0%
TCGTTAGGGAGCTCAATGAG+CGG + chr1_2:9436640-9436659 None:intergenic 50.0%
TCATTGAGCTCCCTAACGAC+TGG - chr1_2:9436641-9436660 Msa0054720:intron 50.0%
CAACTAGGGTCCAGTCGTTA+GGG + chr1_2:9436654-9436673 None:intergenic 50.0%
TCAACTAGGGTCCAGTCGTT+AGG + chr1_2:9436655-9436674 None:intergenic 50.0%
TAACGACTGGACCCTAGTTG+AGG - chr1_2:9436654-9436673 Msa0054720:intron 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr1_2:9436724-9436743 Msa0054720:intron 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr1_2:9436735-9436754 Msa0054720:intron 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr1_2:9436780-9436799 Msa0054720:intron 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr1_2:9436791-9436810 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr1_2:9436832-9436851 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG + chr1_2:9436854-9436873 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr1_2:9436916-9436935 Msa0054720:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG + chr1_2:9437454-9437473 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG - chr1_2:9437452-9437471 Msa0054720:intron 50.0%
TTTGCGGTGTGATACGGTGT+TGG - chr1_2:9437622-9437641 Msa0054720:intron 50.0%
TTGCGGTGTGATACGGTGTT+GGG - chr1_2:9437623-9437642 Msa0054720:intron 50.0%
ATTGCTGGATCTAGTGAGGG+TGG - chr1_2:9437706-9437725 Msa0054720:intron 50.0%
AGGCATCTGTGCGAGTTTAC+AGG - chr1_2:9437877-9437896 Msa0054720:intron 50.0%
GTACCCGTTTGAACCCCTAA+AGG - chr1_2:9438122-9438141 Msa0054720:CDS 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG - chr1_2:9438494-9438513 Msa0054720:intron 50.0%
AGAAAGGAAACTAGGCCAGC+TGG - chr1_2:9439141-9439160 Msa0054720:intron 50.0%
GAAGAACGTGCACAAGCTTG+CGG - chr1_2:9439611-9439630 Msa0054720:CDS 50.0%
TAACCAGAGCTCAGCAAGAG+GGG + chr1_2:9439785-9439804 None:intergenic 50.0%
! TTTTTCCACGTGACCCACTC+AGG - chr1_2:9439957-9439976 Msa0054720:CDS 50.0%
CATCATGGTGCAATCCTGAG+TGG + chr1_2:9439974-9439993 None:intergenic 50.0%
GCTTGACGCCAATAATGCCT+TGG - chr1_2:9440065-9440084 Msa0054720:five_prime_UTR 50.0%
TTTCACCGTCAACTTGGAGC+TGG - chr1_2:9440143-9440162 Msa0054720:five_prime_UTR 50.0%
! GGTCCTTTTCAAAGTGGGTG+TGG + chr1_2:9440264-9440283 None:intergenic 50.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr1_2:9436572-9436591 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr1_2:9436575-9436594 None:intergenic 55.0%
CGTTAGGGAGCTCAATGAGC+GGG + chr1_2:9436639-9436658 None:intergenic 55.0%
! ATCCGGTTCTAATCCGTGGG+AGG - chr1_2:9436701-9436720 Msa0054720:intron 55.0%
! TCCGGTTCTAATCCGTGGGA+GGG - chr1_2:9436702-9436721 Msa0054720:intron 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr1_2:9436717-9436736 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr1_2:9436786-9436805 Msa0054720:CDS 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr1_2:9436904-9436923 None:intergenic 55.0%
! GGTGTGATACGGTGTTGGGT+AGG - chr1_2:9437627-9437646 Msa0054720:intron 55.0%
AGGGTGGAGCTGCTGTCTTT+AGG - chr1_2:9437722-9437741 Msa0054720:intron 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG - chr1_2:9437726-9437745 Msa0054720:intron 55.0%
CAAAGGGAAACCTGCATGCC+TGG - chr1_2:9437753-9437772 Msa0054720:intron 55.0%
GAAGTTGAGGTGACTGAGCC+AGG + chr1_2:9437774-9437793 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG - chr1_2:9439289-9439308 Msa0054720:CDS 55.0%
GTCTTACAGCCAACGGGTAC+CGG + chr1_2:9439301-9439320 None:intergenic 55.0%
TGCACAAGCTTGCGGCATTG+AGG - chr1_2:9439619-9439638 Msa0054720:CDS 55.0%
TATGGTGTACCACCACACGG+TGG - chr1_2:9439866-9439885 Msa0054720:CDS 55.0%
TGGCGTCAAGCTACACCTTC+AGG + chr1_2:9440056-9440075 None:intergenic 55.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr1_2:9436572-9436591 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr1_2:9436575-9436594 None:intergenic 55.0%
CGTTAGGGAGCTCAATGAGC+GGG + chr1_2:9436639-9436658 None:intergenic 55.0%
! ATCCGGTTCTAATCCGTGGG+AGG - chr1_2:9436701-9436720 Msa0054720:intron 55.0%
! TCCGGTTCTAATCCGTGGGA+GGG - chr1_2:9436702-9436721 Msa0054720:intron 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr1_2:9436717-9436736 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr1_2:9436786-9436805 Msa0054720:CDS 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr1_2:9436904-9436923 None:intergenic 55.0%
! GGTGTGATACGGTGTTGGGT+AGG - chr1_2:9437627-9437646 Msa0054720:intron 55.0%
AGGGTGGAGCTGCTGTCTTT+AGG - chr1_2:9437722-9437741 Msa0054720:intron 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG - chr1_2:9437726-9437745 Msa0054720:intron 55.0%
CAAAGGGAAACCTGCATGCC+TGG - chr1_2:9437753-9437772 Msa0054720:intron 55.0%
GAAGTTGAGGTGACTGAGCC+AGG + chr1_2:9437774-9437793 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG - chr1_2:9439289-9439308 Msa0054720:CDS 55.0%
GTCTTACAGCCAACGGGTAC+CGG + chr1_2:9439301-9439320 None:intergenic 55.0%
TGCACAAGCTTGCGGCATTG+AGG - chr1_2:9439619-9439638 Msa0054720:CDS 55.0%
TATGGTGTACCACCACACGG+TGG - chr1_2:9439866-9439885 Msa0054720:CDS 55.0%
TGGCGTCAAGCTACACCTTC+AGG + chr1_2:9440056-9440075 None:intergenic 55.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr1_2:9436706-9436725 None:intergenic 60.0%
GTACCACCACACGGTGGCTT+TGG - chr1_2:9439872-9439891 Msa0054720:CDS 60.0%
ACTCCAAAGCCACCGTGTGG+TGG + chr1_2:9439878-9439897 None:intergenic 60.0%
CCTACTCCAAAGCCACCGTG+TGG + chr1_2:9439881-9439900 None:intergenic 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG - chr1_2:9439878-9439897 Msa0054720:CDS 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG - chr1_2:9439883-9439902 Msa0054720:CDS 60.0%
GCAATCCTGAGTGGGTCACG+TGG + chr1_2:9439965-9439984 None:intergenic 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr1_2:9436706-9436725 None:intergenic 60.0%
GTACCACCACACGGTGGCTT+TGG - chr1_2:9439872-9439891 Msa0054720:CDS 60.0%
ACTCCAAAGCCACCGTGTGG+TGG + chr1_2:9439878-9439897 None:intergenic 60.0%
CCTACTCCAAAGCCACCGTG+TGG + chr1_2:9439881-9439900 None:intergenic 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG - chr1_2:9439878-9439897 Msa0054720:CDS 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG - chr1_2:9439883-9439902 Msa0054720:CDS 60.0%
GCAATCCTGAGTGGGTCACG+TGG + chr1_2:9439965-9439984 None:intergenic 60.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr1_2:9436558-9436577 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr1_2:9436569-9436588 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG + chr1_2:9436851-9436870 None:intergenic 65.0%
GGTGACTGAGCCAGGCATGC+AGG + chr1_2:9437766-9437785 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG + chr1_2:9439295-9439314 None:intergenic 65.0%
CTGCCCCTCTTGCTGAGCTC+TGG - chr1_2:9439779-9439798 Msa0054720:CDS 65.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr1_2:9436558-9436577 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr1_2:9436569-9436588 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG + chr1_2:9436851-9436870 None:intergenic 65.0%
GGTGACTGAGCCAGGCATGC+AGG + chr1_2:9437766-9437785 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG + chr1_2:9439295-9439314 None:intergenic 65.0%
CTGCCCCTCTTGCTGAGCTC+TGG - chr1_2:9439779-9439798 Msa0054720:CDS 65.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr1_2:9436555-9436574 None:intergenic 70.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr1_2:9436555-9436574 None:intergenic 70.0%
CGGCGGCAACTTCTCGGCGG+CGG + chr1_2:9436552-9436571 None:intergenic 75.0%
CGGCGGCAACTTCTCGGCGG+CGG + chr1_2:9436552-9436571 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9435959 9440497 9435959 ID=Msa0054720;Name=Msa0054720
chr1_2 mRNA 9435959 9440497 9435959 ID=Msa0054720-mRNA-1;Parent=Msa0054720;Name=Msa0054720-mRNA-1;_AED=0.30;_eAED=0.30;_QI=495|1|1|1|1|1|10|506|532
chr1_2 exon 9435959 9436591 9435959 ID=Msa0054720-mRNA-1:exon:3515;Parent=Msa0054720-mRNA-1
chr1_2 exon 9436781 9436895 9436781 ID=Msa0054720-mRNA-1:exon:3514;Parent=Msa0054720-mRNA-1
chr1_2 exon 9437070 9437185 9437070 ID=Msa0054720-mRNA-1:exon:3513;Parent=Msa0054720-mRNA-1
chr1_2 exon 9437283 9437362 9437283 ID=Msa0054720-mRNA-1:exon:3512;Parent=Msa0054720-mRNA-1
chr1_2 exon 9438089 9438142 9438089 ID=Msa0054720-mRNA-1:exon:3511;Parent=Msa0054720-mRNA-1
chr1_2 exon 9438313 9438423 9438313 ID=Msa0054720-mRNA-1:exon:3510;Parent=Msa0054720-mRNA-1
chr1_2 exon 9438517 9438807 9438517 ID=Msa0054720-mRNA-1:exon:3509;Parent=Msa0054720-mRNA-1
chr1_2 exon 9438951 9439064 9438951 ID=Msa0054720-mRNA-1:exon:3508;Parent=Msa0054720-mRNA-1
chr1_2 exon 9439283 9439393 9439283 ID=Msa0054720-mRNA-1:exon:3507;Parent=Msa0054720-mRNA-1
chr1_2 exon 9439523 9440497 9439523 ID=Msa0054720-mRNA-1:exon:3506;Parent=Msa0054720-mRNA-1
chr1_2 five_prime_UTR 9440003 9440497 9440003 ID=Msa0054720-mRNA-1:five_prime_utr;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9439523 9440002 9439523 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9439283 9439393 9439283 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9438951 9439064 9438951 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9438517 9438807 9438517 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9438313 9438423 9438313 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9438089 9438142 9438089 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9437283 9437362 9437283 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9437070 9437185 9437070 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9436781 9436895 9436781 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 CDS 9436465 9436591 9436465 ID=Msa0054720-mRNA-1:cds;Parent=Msa0054720-mRNA-1
chr1_2 three_prime_UTR 9435959 9436464 9435959 ID=Msa0054720-mRNA-1:three_prime_utr;Parent=Msa0054720-mRNA-1
Gene Sequence

>Msa0054720

ATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCAGAAACAAAAAGCAAAAAGGCCTCCAAGAAGGAACTCGCAAAGCTGGAAAAGCAACGCCGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTTGAAGATGACCCCCTTGCTGTCAATTATGGTTTTTTCCCGCTCATTGAGCTCCCTAACGACTGGACCCTAGTTGAGGCTCTCAACGATTCACTAGAGAACAATCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCATTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTTGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGAAATCCAAGTGAGGAAACTGTATTGTGTGAGTAAGGCCATTCCTACTCTGCCGTTTAATATCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCCATTCAGGCTGGTGAACAACTTGTTCGTGTGAATCAGGATACACGATTGAATTTTAGAGTACTTGACCTGCGAACACCAGCAAATCAAGGAATTTTCCACATCCAGTCTCAAGTTGGAACTGCGTTCAGACAATTTTTATTAGCTGAAAGCTTTGTTGAAATCCACACTCCTAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTCTTTAGGCTGGACTACAAAGGGAAACCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGTCAATATTTGGTGATTTTCGCCGTGTTTTTGAGATTGGTGCTGTGTATAGAGCAGAAGATTCCTTTACTCATAGGCATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAACATTATTATGAGGTTATGGATGTAGTTGACAAATTGTTTGTTGCTATGTTTGACACTTTGAACACAAAATGTAAGAAGGATCTCGAAGCTGTGGCAAATCAGTACCCGTTTGAACCCCTAAAGTATCTTCCAAATACTCTGCGGCTTACATATGAAGAAGGTATTCAGATGCTCAAGGAAGTTGGAGTAGAGATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAGCTGGTTTTAGAAAAGTATGGAACAGAGTTCTATATCCTTCACCGGTACCCGTTGGCTGTAAGACCATTTTATACAATGCCTTGCTATGACAACCCAAACTACAGTAACTCTTTTGATGTCTTCATTCGAGGTGAGGAGATAATATCAGGAGCTCAGCGTATCCACATGCCTGAATTTTTGGAAGAACGTGCACAAGCTTGCGGCATTGAGGTCAAGACAATACCTGCTTACATTGATTCTTTCAGATATGGTGTACCACCACACGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCTTGAACAACATTCGCAAAACATCACTTTTTCCACGTGACCCACTCAGGATTGCACCATGA
Protein sequence

>Msa0054720

MSTSESQEPTLSSETKSKKASKKELAKLEKQRRRREVAAATSATSTLSVEDDPLAVNYGFFPLIELPNDWTLVEALNDSLENNPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVEIQVRKLYCVSKAIPTLPFNIEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFHIQSQVGTAFRQFLLAESFVEIHTPKLIAGSSEGGAAVFRLDYKGKPACLAQSPQLHKQMSIFGDFRRVFEIGAVYRAEDSFTHRHLCEFTGLDVEMEIKKHYYEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHMPEFLEERAQACGIEVKTIPAYIDSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP*