AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0992490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992490 MtrunA17_Chr1g0150111 98.706 541 7 0 1 541 1 541 0.0 1104
Msa0992490 MtrunA17_Chr5g0410321 65.338 577 132 4 1 541 62 606 0.0 733
Msa0992490 MtrunA17_Chr8g0389541 30.961 281 174 8 271 538 275 548 3.90e-28 118
Msa0992490 MtrunA17_Chr7g0263951 31.560 282 173 10 271 538 325 600 2.99e-27 115
Msa0992490 MtrunA17_Chr2g0298001 23.878 490 324 15 83 533 109 588 2.94e-23 103
Msa0992490 MtrunA17_Chr8g0335841 22.691 498 295 18 90 533 111 572 4.91e-16 81.3
Msa0992490 MtrunA17_Chr4g0072181 22.899 345 230 10 209 520 32 373 2.06e-13 72.0
Msa0992490 MtrunA17_Chr8g0338601 22.846 267 189 8 278 534 367 626 1.73e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992490 AT4G31180.1 64.632 557 179 4 3 541 2 558 0.0 733
Msa0992490 AT4G31180.2 64.632 557 179 4 3 541 2 558 0.0 733
Msa0992490 AT4G26870.1 65.825 515 170 4 28 541 23 532 0.0 694
Msa0992490 AT5G56680.1 30.882 272 168 8 278 536 303 567 2.74e-29 122
Msa0992490 AT4G17300.2 25.751 466 251 15 122 536 161 582 2.90e-28 119
Msa0992490 AT4G17300.1 25.751 466 251 15 122 536 141 562 3.20e-28 119
Msa0992490 AT1G70980.1 29.304 273 173 7 278 536 300 566 3.03e-25 110
Msa0992490 AT3G13490.1 22.133 497 294 17 94 533 136 596 2.57e-17 85.9

Find 163 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACATCGATTCTTTC+AGG 0.151574 6_4:-61322816 Msa0992490:intron
CAGCTTTGCGGCATCCTTCT+TGG 0.168840 6_4:+61325988 None:intergenic
ATTCCAGCCGCTCCTATTAA+AGG 0.200895 6_4:-61325587 Msa0992490:CDS
CAAACAAATTAACACCTTTA+GGG 0.270476 6_4:+61324357 None:intergenic
ATGTCAATATGTGGTGATTT+TGG 0.279212 6_4:-61324691 Msa0992490:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.279492 6_4:-61325725 Msa0992490:CDS
CGGAAAATTCCTTGATTTGC+TGG 0.282793 6_4:+61325034 None:intergenic
GATCCCCTTGCTGTCAATTA+TGG 0.290000 6_4:-61325899 Msa0992490:CDS
TATGTAAGCCGCAGAGTATT+TGG 0.299031 6_4:+61324173 None:intergenic
TGAAATTGAGAAGGCCATTC+AGG 0.299926 6_4:-61325332 Msa0992490:intron
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 6_4:+61325575 None:intergenic
TCAAAAGAGTTGCTGTAGTT+TGG 0.309589 6_4:+61323126 None:intergenic
AGGCATCTGTGCGAGTTTAC+AGG 0.319353 6_4:-61324616 Msa0992490:CDS
AAGTAAGTCCAAGGCATTAT+TGG 0.332543 6_4:+61322442 None:intergenic
CAAAAGAGTTGCTGTAGTTT+GGG 0.339138 6_4:+61323127 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 6_4:-61325699 Msa0992490:CDS
TGGCGTCAAGCTACACCTTC+AGG 0.350829 6_4:+61322462 None:intergenic
AATTGTTTATAAGGCAGATT+GGG 0.354080 6_4:+61322025 None:intergenic
CACAATACAGTTTCCTCACT+TGG 0.354867 6_4:+61325413 None:intergenic
CATGATGGTATGAAATTGTT+TGG 0.357276 6_4:-61322078 Msa0992490:three_prime_UTR
CAGAAGATTCCTTTACTCAT+AGG 0.359787 6_4:-61324636 Msa0992490:CDS
CACACTCCTAAGTTGATTGC+TGG 0.375345 6_4:-61324802 Msa0992490:CDS
GTCCAGTCGTTGACATTGAC+AGG 0.393463 6_4:+61325842 None:intergenic
TAGCAAGGCATTGTATAAAA+TGG 0.394303 6_4:+61323156 None:intergenic
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 6_4:+61325951 None:intergenic
GTACCACCACACGGTGGCTT+TGG 0.402704 6_4:-61322643 Msa0992490:CDS
GAATTGTTTATAAGGCAGAT+TGG 0.409095 6_4:+61322024 None:intergenic
ACAACTTGTTCGTGTGAATC+AGG 0.411639 6_4:-61325095 Msa0992490:CDS
CAAAGGGCAACCTGCATGCC+TGG 0.419819 6_4:-61324740 Msa0992490:CDS
TACAGGTCTTGATGTTGAAA+TGG 0.423398 6_4:-61324599 Msa0992490:CDS
CAAGAAGGATGCCGCAAAGC+TGG 0.423709 6_4:-61325987 Msa0992490:CDS
AGGGTGGAGCTGCTGTCTTT+AGG 0.428133 6_4:-61324771 Msa0992490:CDS
GATTTGAAGAAGAACGAGAT+TGG 0.431028 6_4:+61326970 None:intergenic
CTTTGCGGCATCCTTCTTGG+AGG 0.431699 6_4:+61325991 None:intergenic
ATGTGATTGAGTGATAAATA+TGG 0.439555 6_4:-61322206 Msa0992490:three_prime_UTR
GGAGTAGAGATTGAACCTTT+TGG 0.442706 6_4:-61323376 Msa0992490:CDS
CATTGACAGGGGTCTTCGAT+TGG 0.443151 6_4:+61325855 None:intergenic
AACACCTTTAGGGGTTCAAA+CGG 0.444877 6_4:+61324367 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 6_4:+61325671 None:intergenic
CTTGATTTGCTGGTGTTCGC+AGG 0.452358 6_4:+61325044 None:intergenic
AACGCCATCTTCTTCCCAAC+TGG 0.452718 6_4:+61325746 None:intergenic
GCCCTCCCACGGATTAGAAC+CGG 0.456675 6_4:+61325782 None:intergenic
GCAGCATCCTCGATATTAAT+CGG 0.461821 6_4:+61325367 None:intergenic
ATGAGAGTTTCGGAGAAATG+AGG 0.462622 6_4:+61327040 None:intergenic
TGGAGCTGCTGTCTTTAGGC+TGG 0.464922 6_4:-61324767 Msa0992490:CDS
GATTAAGAAACATTATTATG+AGG 0.466183 6_4:-61324575 Msa0992490:intron
TTACATTTCCAACTTGAGAC+TGG 0.472065 6_4:+61325008 None:intergenic
TATTAAAGGTGCCTCACAAC+AGG 0.473545 6_4:-61325573 Msa0992490:intron
CGGTGGCTTTGGAGTAGGCT+TGG 0.490259 6_4:-61322632 Msa0992490:CDS
TTAGGCGAGGAGATAATATC+AGG 0.491304 6_4:-61322913 Msa0992490:intron
TGAGGCTCTCAATGATTCAC+TGG 0.499024 6_4:-61325813 Msa0992490:CDS
TGGTTTCACCGTACAGTGCT+TGG 0.499781 6_4:-61325705 Msa0992490:CDS
AAAATGGTCTTACAGCCAAC+GGG 0.502027 6_4:+61323172 None:intergenic
GTCTTACAGCCAACGGGTAC+CGG 0.506627 6_4:+61323178 None:intergenic
TCAGTATTCAAGTCACCAAA+AGG 0.506705 6_4:+61323361 None:intergenic
TGAGAGTTTCGGAGAAATGA+GGG 0.508206 6_4:+61327041 None:intergenic
TTACCACACCCACTTTGAAA+AGG 0.509095 6_4:-61322254 Msa0992490:three_prime_UTR
CTAGATCCAGCAATCAACTT+AGG 0.510006 6_4:+61324796 None:intergenic
TTTCACCGTCAACTTGGAGC+TGG 0.511610 6_4:-61322372 Msa0992490:three_prime_UTR
TTTAATAGGAGCGGCTGGAA+TGG 0.513685 6_4:+61325589 None:intergenic
GAGTCTATTGTCGATGTCGA+AGG 0.513770 6_4:-61325620 Msa0992490:CDS
GCACCTTTAATAGGAGCGGC+TGG 0.516328 6_4:+61325584 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 6_4:-61325760 Msa0992490:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 6_4:-61325761 Msa0992490:CDS
TAACACCAGCTCCAAGTTGA+CGG 0.522048 6_4:+61322367 None:intergenic
ACACCTTTAGGGGTTCAAAC+GGG 0.524064 6_4:+61324368 None:intergenic
CAGCCAACGGGTACCGGTGA+AGG 0.524085 6_4:+61323184 None:intergenic
CTGCGGCTTACATATGAAGA+AGG 0.526092 6_4:-61324164 Msa0992490:CDS
AAGAAGAACGAGATTGGAGA+TGG 0.527588 6_4:+61326976 None:intergenic
CATGCAGTTCTATATGAAGC+GGG 0.529598 6_4:+61322288 None:intergenic
AATGAATATATATACCTGAA+TGG 0.529761 6_4:+61325318 None:intergenic
GAAACTGTATTGTGTGAGTA+AGG 0.532678 6_4:-61325404 Msa0992490:CDS
AAACAAATTAACACCTTTAG+GGG 0.533347 6_4:+61324358 None:intergenic
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 6_4:+61325771 None:intergenic
TTCCGCATCCAGTCTCAAGT+TGG 0.536075 6_4:-61325016 Msa0992490:CDS
GGAGTGAGTGATGAGAGTTT+CGG 0.536508 6_4:+61327030 None:intergenic
CTGCGAACACCAGCAAATCA+AGG 0.537117 6_4:-61325043 Msa0992490:CDS
GAAGTTGAGGTGACTGAGCC+AGG 0.538658 6_4:+61324722 None:intergenic
AGAAAGGAAACTAGGCCAGC+TGG 0.539715 6_4:-61323335 Msa0992490:CDS
TCTTTAGGCTGGACTACAAA+GGG 0.542694 6_4:-61324756 Msa0992490:CDS
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 6_4:+61325940 None:intergenic
CCACACGGTGGCTTTGGAGT+AGG 0.547341 6_4:-61322637 Msa0992490:CDS
AACAAGCCGGTTCTAATCCG+TGG 0.547533 6_4:-61325788 Msa0992490:CDS
TTTGAACACAAAATGTAAGA+AGG 0.547679 6_4:-61324416 Msa0992490:CDS
GCTTGACGCCAATAATGCCT+TGG 0.549853 6_4:-61322450 Msa0992490:three_prime_UTR
CCCCTGTCAATGTCAACGAC+TGG 0.551263 6_4:-61325844 Msa0992490:CDS
TAAAATGGTCTTACAGCCAA+CGG 0.552316 6_4:+61323171 None:intergenic
TCGATATTAATCGGCAGAGT+AGG 0.553228 6_4:+61325376 None:intergenic
GGTGACTGAGCCAGGCATGC+AGG 0.555621 6_4:+61324730 None:intergenic
TCGATTGGAGCTCAATGAGC+GGG 0.557785 6_4:+61325870 None:intergenic
GACATTTGCTTGTGAAGTTG+AGG 0.558674 6_4:+61324709 None:intergenic
GCACAGATGCCTATGAGTAA+AGG 0.560403 6_4:+61324627 None:intergenic
CACAAGCAAATGTCAATATG+TGG 0.561198 6_4:-61324700 Msa0992490:CDS
TTCCAACTTGAGACTGGATG+CGG 0.563223 6_4:+61325014 None:intergenic
TAGTTTGGGTTGTCATAGCA+AGG 0.568207 6_4:+61323141 None:intergenic
AAATGCTAATAACATCATCA+TGG 0.570368 6_4:+61322529 None:intergenic
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 6_4:+61325937 None:intergenic
CAGAGTTCTATATCCTTCAC+CGG 0.573477 6_4:-61323197 Msa0992490:CDS
ATTAATCGGCAGAGTAGGAA+TGG 0.575600 6_4:+61325381 None:intergenic
GAAGAACGTGCACAAGCTTG+CGG 0.577219 6_4:-61322859 Msa0992490:CDS
TTTATCCACGTGACCCACTC+AGG 0.577438 6_4:-61322558 Msa0992490:CDS
CACATTCAACTGAAGCCTGA+AGG 0.578547 6_4:-61322477 Msa0992490:three_prime_UTR
GTCTTTAGGCTGGACTACAA+AGG 0.579932 6_4:-61324757 Msa0992490:CDS
TCGACCAGTTGGGAAGAAGA+TGG 0.581394 6_4:-61325750 Msa0992490:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 6_4:+61325637 None:intergenic
TGCACAAGCTTGCGGCATTG+AGG 0.583418 6_4:-61322851 Msa0992490:CDS
AATCATTGAGAGCCTCAACT+CGG 0.583678 6_4:+61325819 None:intergenic
ACTGAAGCAGAAAGGAAACT+AGG 0.584857 6_4:-61323343 Msa0992490:CDS
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 6_4:+61325934 None:intergenic
TACTCTGCCGATTAATATCG+AGG 0.589627 6_4:-61325374 Msa0992490:CDS
TCCAGTCGTTGACATTGACA+GGG 0.592334 6_4:+61325843 None:intergenic
AGAGAGAGTCGATGTAGCAG+AGG 0.593608 6_4:+61325931 None:intergenic
ACTTGAATACTGAAGCAGAA+AGG 0.595013 6_4:-61323351 Msa0992490:CDS
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 6_4:-61325669 Msa0992490:CDS
GTACCCGTTTGAACCCCTAA+AGG 0.597654 6_4:-61324371 Msa0992490:intron
ATCATTGAGAGCCTCAACTC+GGG 0.599803 6_4:+61325820 None:intergenic
CAACGACTGGACCCGAGTTG+AGG 0.600329 6_4:-61325831 Msa0992490:CDS
TCAAGAGCCGACACTGTCAT+CGG 0.603493 6_4:-61326041 Msa0992490:CDS
GATCCTTCCGATGACAGTGT+CGG 0.605021 6_4:+61326034 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 6_4:+61325580 None:intergenic
TATCCTTCACCGGTACCCGT+TGG 0.609544 6_4:-61323187 Msa0992490:CDS
GCCGGTTCTAATCCGTGGGA+GGG 0.610769 6_4:-61325783 Msa0992490:CDS
TTCGATTGGAGCTCAATGAG+CGG 0.611035 6_4:+61325869 None:intergenic
CAGCAATCAACTTAGGAGTG+TGG 0.611888 6_4:+61324803 None:intergenic
TGATTCACTGGAGAACAAGC+CGG 0.613416 6_4:-61325801 Msa0992490:CDS
GCGGCAAATTTCACCATCTG+CGG 0.614321 6_4:+61325656 None:intergenic
ATTGCTGGATCTAGTGAGGG+TGG 0.614640 6_4:-61324787 Msa0992490:CDS
ATACCATAATTGACAGCAAG+GGG 0.614733 6_4:+61325896 None:intergenic
ACAAGCCGGTTCTAATCCGT+GGG 0.615482 6_4:-61325787 Msa0992490:CDS
TATTGTCGATGTCGAAGGTG+TGG 0.616371 6_4:-61325615 Msa0992490:CDS
TCAGGCTTCAGTTGAATGTG+AGG 0.617159 6_4:+61322480 None:intergenic
ATCATGGTGCAATCCTGAGT+GGG 0.620490 6_4:+61322545 None:intergenic
GCATGCAGTTCTATATGAAG+CGG 0.621106 6_4:+61322287 None:intergenic
AATAGACTCACGGCTGAGAG+CGG 0.623488 6_4:+61325634 None:intergenic
AGCCGGTTCTAATCCGTGGG+AGG 0.623958 6_4:-61325784 Msa0992490:CDS
AAGTGAAGTTGAAATTGAGA+AGG 0.624126 6_4:-61325341 Msa0992490:CDS
GAGCCGACACTGTCATCGGA+AGG 0.625324 6_4:-61326037 Msa0992490:CDS
TGTTTGGAAAAGTAAGTCCA+AGG 0.629031 6_4:+61322433 None:intergenic
TAAGAAGGATCTCGAAGCTG+TGG 0.629352 6_4:-61324401 Msa0992490:CDS
GTTGATTGCTGGATCTAGTG+AGG 0.632210 6_4:-61324791 Msa0992490:CDS
CAATACCATAATTGACAGCA+AGG 0.634292 6_4:+61325894 None:intergenic
CGTGTAGTAATGCTCTTCTG+TGG 0.635161 6_4:-61322607 Msa0992490:CDS
TGCCTGAACCAAGCACTGTA+CGG 0.635520 6_4:+61325697 None:intergenic
ATCATAACCAACCTGTTGTG+AGG 0.639858 6_4:+61325562 None:intergenic
AGAAGGTATTCAGATGCTCA+AGG 0.641602 6_4:-61324147 Msa0992490:intron
ATTGTTTATAAGGCAGATTG+GGG 0.642473 6_4:+61322026 None:intergenic
TTGATTGCTGGATCTAGTGA+GGG 0.644845 6_4:-61324790 Msa0992490:CDS
ACTCCAAAGCCACCGTGTGG+TGG 0.646949 6_4:+61322640 None:intergenic
ACACTATTAAAATAGTGCTG+TGG 0.647523 6_4:-61322413 Msa0992490:three_prime_UTR
CATCATGGTGCAATCCTGAG+TGG 0.650761 6_4:+61322544 None:intergenic
CGACATCGACAATAGACTCA+CGG 0.651944 6_4:+61325624 None:intergenic
GAATCTTCTGCTCTAAACAC+AGG 0.652142 6_4:+61324649 None:intergenic
AGATATGGTGTACCACCACA+CGG 0.671410 6_4:-61322652 Msa0992490:CDS
TATAGGTTGAAATCCAAGTG+AGG 0.674003 6_4:-61325426 Msa0992490:intron
GCAATCCTGAGTGGGTCACG+TGG 0.689157 6_4:+61322553 None:intergenic
AATACCATAATTGACAGCAA+GGG 0.690003 6_4:+61325895 None:intergenic
ATGCAGTTCTATATGAAGCG+GGG 0.701942 6_4:+61322289 None:intergenic
ACGAGATTGGAGATGGTGTG+TGG 0.706722 6_4:+61326983 None:intergenic
TGGCGGCGGCAACTTCTCGG+CGG 0.706873 6_4:+61325954 None:intergenic
CCTACTCCAAAGCCACCGTG+TGG 0.729566 6_4:+61322637 None:intergenic
CCAGTCGTTGACATTGACAG+GGG 0.731951 6_4:+61325844 None:intergenic
AGTATCTTCCAAATACTCTG+CGG 0.740430 6_4:-61324181 Msa0992490:CDS
TATGGTGTACCACCACACGG+TGG 0.820152 6_4:-61322649 Msa0992490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTAATGTAATGACTT+TGG - chr6_4:61322353-61322372 Msa0992490:three_prime_UTR 15.0%
!!! TTTGATTGAAAATTTTACAA+TGG - chr6_4:61322460-61322479 Msa0992490:three_prime_UTR 15.0%
!! ATTCTTAAAGAATCTAAAAA+TGG + chr6_4:61322524-61322543 None:intergenic 15.0%
!!! GAGTTTAATTTTATCATATA+TGG + chr6_4:61322946-61322965 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG - chr6_4:61323629-61323648 Msa0992490:intron 15.0%
!! AGAATAATATTAGAGAAAAT+AGG + chr6_4:61324118-61324137 None:intergenic 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG + chr6_4:61325440-61325459 None:intergenic 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG - chr6_4:61325440-61325459 Msa0992490:intron 15.0%
!! TCTTAGATAAAAATTAGAAA+GGG + chr6_4:61326919-61326938 None:intergenic 15.0%
!! TTCTTAGATAAAAATTAGAA+AGG + chr6_4:61326920-61326939 None:intergenic 15.0%
!! TTCTTGAAGAAACTAAAAAT+TGG + chr6_4:61322253-61322272 None:intergenic 20.0%
!!! GTTGTATTTTTTCGTTTATT+GGG - chr6_4:61322375-61322394 Msa0992490:three_prime_UTR 20.0%
!! TTTGAAGAAAAAAAATGCAA+TGG - chr6_4:61322774-61322793 Msa0992490:intron 20.0%
!! TTGAAGAAAAAAAATGCAAT+GGG - chr6_4:61322775-61322794 Msa0992490:intron 20.0%
!! TAAGTACTTGAAAATTTACT+TGG - chr6_4:61322818-61322837 Msa0992490:CDS 20.0%
!!! ATTAAGTTGAGATCAATTTT+TGG - chr6_4:61322845-61322864 Msa0992490:CDS 20.0%
!! AATGAATATATATACCTGAA+TGG + chr6_4:61323783-61323802 None:intergenic 20.0%
!! TCAATTACAACATTTCTAAT+CGG + chr6_4:61323807-61323826 None:intergenic 20.0%
!!! TGTTGTTTTGTTTAATATAC+TGG - chr6_4:61323922-61323941 Msa0992490:intron 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG + chr6_4:61324204-61324223 None:intergenic 20.0%
!! GATTAAGAAACATTATTATG+AGG - chr6_4:61324523-61324542 Msa0992490:intron 20.0%
!!! TCAATTTATTTGTTTTGTAG+TGG - chr6_4:61324801-61324820 Msa0992490:CDS 20.0%
!!! CAATTTATTTGTTTTGTAGT+GGG - chr6_4:61324802-61324821 Msa0992490:CDS 20.0%
!!! TCAATTTTACAAAATAGACA+GGG + chr6_4:61325078-61325097 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG - chr6_4:61325080-61325099 Msa0992490:CDS 20.0%
!! TTTAAACTTTACAAGAAGAT+TGG + chr6_4:61325185-61325204 None:intergenic 20.0%
!! TAAATTGATGAAAATGTACT+TGG - chr6_4:61325258-61325277 Msa0992490:intron 20.0%
!! AAATTGATGAAAATGTACTT+GGG - chr6_4:61325259-61325278 Msa0992490:intron 20.0%
!!! TAGAATTTTCAAAAATTGGA+GGG + chr6_4:61325391-61325410 None:intergenic 20.0%
!!! TTAGAATTTTCAAAAATTGG+AGG + chr6_4:61325392-61325411 None:intergenic 20.0%
!!! TGGTTAGAATTTTCAAAAAT+TGG + chr6_4:61325395-61325414 None:intergenic 20.0%
!! AACCAAATAATTGTAACTAT+TGG - chr6_4:61325410-61325429 Msa0992490:CDS 20.0%
!! ACCAAATAATTGTAACTATT+GGG - chr6_4:61325411-61325430 Msa0992490:CDS 20.0%
!! ACTGTAACTATGATATATAT+AGG - chr6_4:61325623-61325642 Msa0992490:CDS 20.0%
!! TAACTATGATATATATAGGA+TGG - chr6_4:61325627-61325646 Msa0992490:CDS 20.0%
!! TGTAATTCTATTTATAGGTA+TGG - chr6_4:61325876-61325895 Msa0992490:CDS 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG - chr6_4:61326380-61326399 Msa0992490:intron 20.0%
!!! TTATCAATCATTTAGTTTTC+TGG + chr6_4:61326421-61326440 None:intergenic 20.0%
!!! TGATTGATAATTTACAGATA+TGG - chr6_4:61326431-61326450 Msa0992490:intron 20.0%
!! AATACTGAATAGACAAAAAA+TGG + chr6_4:61326871-61326890 None:intergenic 20.0%
!! CTTAGATAAAAATTAGAAAG+GGG + chr6_4:61326918-61326937 None:intergenic 20.0%
!!! GAATACTTTTTAAGATCTTT+TGG - chr6_4:61326970-61326989 Msa0992490:five_prime_UTR 20.0%
!!! GGTTGTATTTTTTCGTTTAT+TGG - chr6_4:61322374-61322393 Msa0992490:three_prime_UTR 25.0%
! CTTAAAGAATCTAAAAATGG+AGG + chr6_4:61322521-61322540 None:intergenic 25.0%
!! GGTATTTGTTAAAAGGATTT+AGG - chr6_4:61322633-61322652 Msa0992490:CDS 25.0%
!! GTTGTATTTGTTAGCTTAAT+GGG - chr6_4:61322655-61322674 Msa0992490:intron 25.0%
!! AAAATTTTACACTGATGTTG+TGG - chr6_4:61322750-61322769 Msa0992490:intron 25.0%
! TGAAGAAAAAAAATGCAATG+GGG - chr6_4:61322776-61322795 Msa0992490:intron 25.0%
! TTGGTACTAATGTAATTTGA+TGG - chr6_4:61322864-61322883 Msa0992490:CDS 25.0%
!! GATTATCTAACCATCATTTT+TGG - chr6_4:61322890-61322909 Msa0992490:CDS 25.0%
! ATGATTAGTACCAAAAATGA+TGG + chr6_4:61322903-61322922 None:intergenic 25.0%
! ATCAGAAACAAAAAGCAAAA+AGG - chr6_4:61323084-61323103 Msa0992490:intron 25.0%
!! GTTATGATATCTTGTTACTT+AGG - chr6_4:61323551-61323570 Msa0992490:intron 25.0%
!!! TTGATTATAATGGTGTTATG+TGG - chr6_4:61323639-61323658 Msa0992490:intron 25.0%
!! AACTTAAGAAATGCATTTTG+CGG - chr6_4:61324211-61324230 Msa0992490:intron 25.0%
! ACATTATTATGAGGTACATT+TGG - chr6_4:61324532-61324551 Msa0992490:intron 25.0%
!! ACTGATACTTTTGTGTTTTT+TGG - chr6_4:61324612-61324631 Msa0992490:CDS 25.0%
! TTTGAACACAAAATGTAAGA+AGG - chr6_4:61324682-61324701 Msa0992490:CDS 25.0%
! AAACAAATTAACACCTTTAG+GGG + chr6_4:61324743-61324762 None:intergenic 25.0%
! CAAACAAATTAACACCTTTA+GGG + chr6_4:61324744-61324763 None:intergenic 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG - chr6_4:61324743-61324762 Msa0992490:CDS 25.0%
! GATAAACAAACAAATGTGAT+AGG - chr6_4:61325015-61325034 Msa0992490:CDS 25.0%
!! CTCAATTTTACAAAATAGAC+AGG + chr6_4:61325079-61325098 None:intergenic 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG - chr6_4:61325079-61325098 Msa0992490:CDS 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG - chr6_4:61325081-61325100 Msa0992490:CDS 25.0%
! TATAAGATTAAACTGTACAC+AGG + chr6_4:61325135-61325154 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG + chr6_4:61325323-61325342 None:intergenic 25.0%
! TTTAGTCATTTCATTGATGA+TGG - chr6_4:61325338-61325357 Msa0992490:CDS 25.0%
! CCAAATAATTGTAACTATTG+GGG - chr6_4:61325412-61325431 Msa0992490:CDS 25.0%
! AAAGGACATAGTTATTTGAT+TGG - chr6_4:61325458-61325477 Msa0992490:intron 25.0%
!!! TTTCCTCTTTTAGTTAGTTT+TGG - chr6_4:61325542-61325561 Msa0992490:intron 25.0%
!!! TTCCTCTTTTAGTTAGTTTT+GGG - chr6_4:61325543-61325562 Msa0992490:intron 25.0%
!! GTTATAAAAGATTTGAGACA+GGG + chr6_4:61325805-61325824 None:intergenic 25.0%
!! AGTTATAAAAGATTTGAGAC+AGG + chr6_4:61325806-61325825 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG - chr6_4:61325871-61325890 Msa0992490:CDS 25.0%
!! AATGCTTTGTTATGACAATT+TGG - chr6_4:61326041-61326060 Msa0992490:CDS 25.0%
! GTTCAATGTCTTTGTTAATA+CGG - chr6_4:61326330-61326349 Msa0992490:intron 25.0%
! TTCAATGTCTTTGTTAATAC+GGG - chr6_4:61326331-61326350 Msa0992490:intron 25.0%
!! CTCTGGTTATAATGATTTTA+TGG - chr6_4:61326379-61326398 Msa0992490:intron 25.0%
!! CTGGTTATAATGATTTTATG+GGG - chr6_4:61326381-61326400 Msa0992490:intron 25.0%
! AAATGCTAATAACATCATCA+TGG + chr6_4:61326572-61326591 None:intergenic 25.0%
!!! AGCACTATTTTAATAGTGTT+TGG + chr6_4:61326684-61326703 None:intergenic 25.0%
! ATGTGATTGAGTGATAAATA+TGG - chr6_4:61326892-61326911 Msa0992490:intron 25.0%
!!! CTTAAAAAGTATTCATACAG+AGG + chr6_4:61326964-61326983 None:intergenic 25.0%
!! GTTTTTACTTATGTACATGA+TGG - chr6_4:61327005-61327024 Msa0992490:five_prime_UTR 25.0%
! AAATTGGTTTCTACCAATAG+AGG + chr6_4:61322237-61322256 None:intergenic 30.0%
AAATTCAAAGAACACCACTT+AGG + chr6_4:61322427-61322446 None:intergenic 30.0%
TACCATTTGAGCACAAAAAA+CGG + chr6_4:61322550-61322569 None:intergenic 30.0%
! TGAATCTTGTTTCTTGAGTT+TGG - chr6_4:61322581-61322600 Msa0992490:CDS 30.0%
! GGTTGTATTTGTTAGCTTAA+TGG - chr6_4:61322654-61322673 Msa0992490:intron 30.0%
! TGTTTGTTAAGTGTTCTAAG+TGG - chr6_4:61322690-61322709 Msa0992490:intron 30.0%
AATACCATAATTGACAGCAA+GGG + chr6_4:61323206-61323225 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr6_4:61323373-61323392 Msa0992490:CDS 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr6_4:61323607-61323626 Msa0992490:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG - chr6_4:61323655-61323674 Msa0992490:intron 30.0%
AAGTGAAGTTGAAATTGAGA+AGG - chr6_4:61323757-61323776 Msa0992490:intron 30.0%
ACACACATCTTTAATCAGAA+AGG + chr6_4:61323898-61323917 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG - chr6_4:61323967-61323986 Msa0992490:intron 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG + chr6_4:61324200-61324219 None:intergenic 30.0%
! ATGTCAATATGTGGTGATTT+TGG - chr6_4:61324407-61324426 Msa0992490:CDS 30.0%
!! ATACTTTTGTGTTTTTTGGC+AGG - chr6_4:61324616-61324635 Msa0992490:CDS 30.0%
CCAAACAAATTAACACCTTT+AGG + chr6_4:61324745-61324764 None:intergenic 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG - chr6_4:61324742-61324761 Msa0992490:CDS 30.0%
!! TTTCATTGATGATGGTAGTT+TGG - chr6_4:61325346-61325365 Msa0992490:CDS 30.0%
!! TTCATTGATGATGGTAGTTT+GGG - chr6_4:61325347-61325366 Msa0992490:CDS 30.0%
CCCCAATAGTTACAATTATT+TGG + chr6_4:61325415-61325434 None:intergenic 30.0%
!!! TTTAGTTAGTTTTGGGAGTT+TGG - chr6_4:61325550-61325569 Msa0992490:intron 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG + chr6_4:61325781-61325800 None:intergenic 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG + chr6_4:61325945-61325964 None:intergenic 30.0%
! TATGGAAGTACAAACACATT+TGG + chr6_4:61326110-61326129 None:intergenic 30.0%
ACAAAGACATTGAACATGAT+AGG + chr6_4:61326325-61326344 None:intergenic 30.0%
ACACTATTAAAATAGTGCTG+TGG - chr6_4:61326685-61326704 Msa0992490:intron 30.0%
! AAAATGGTCCTTTTCAAAGT+GGG + chr6_4:61326855-61326874 None:intergenic 30.0%
! AAAAATGGTCCTTTTCAAAG+TGG + chr6_4:61326856-61326875 None:intergenic 30.0%
CATGATGGTATGAAATTGTT+TGG - chr6_4:61327020-61327039 Msa0992490:five_prime_UTR 30.0%
GATTTGAAGAAGAACGAGAT+TGG + chr6_4:61322131-61322150 None:intergenic 35.0%
TAACCTTCGATTTCCTCTAT+TGG - chr6_4:61322221-61322240 Msa0992490:three_prime_UTR 35.0%
ACATTTATCAGACACCTAGT+AGG + chr6_4:61322404-61322423 None:intergenic 35.0%
TGTCTGATAAATGTCCTAAG+TGG - chr6_4:61322410-61322429 Msa0992490:three_prime_UTR 35.0%
!!! TTCCGTTTTTTGTGCTCAAA+TGG - chr6_4:61322545-61322564 Msa0992490:exon 35.0%
TTTAACAAATACCAGCACAG+AGG + chr6_4:61322626-61322645 None:intergenic 35.0%
! CTGTGCTGGTATTTGTTAAA+AGG - chr6_4:61322626-61322645 Msa0992490:CDS 35.0%
ACACTTAACAAACACCTAGA+GGG + chr6_4:61322684-61322703 None:intergenic 35.0%
AACACTTAACAAACACCTAG+AGG + chr6_4:61322685-61322704 None:intergenic 35.0%
GAAAAAAAATGCAATGGGGT+TGG - chr6_4:61322780-61322799 Msa0992490:intron 35.0%
TATAATTCAAGCTCAGCAAG+AGG - chr6_4:61322970-61322989 Msa0992490:intron 35.0%
ATAATTCAAGCTCAGCAAGA+GGG - chr6_4:61322971-61322990 Msa0992490:intron 35.0%
TCACATTGTTTGTTTGCTTC+AGG - chr6_4:61323010-61323029 Msa0992490:intron 35.0%
ATACCATAATTGACAGCAAG+GGG + chr6_4:61323205-61323224 None:intergenic 35.0%
CAATACCATAATTGACAGCA+AGG + chr6_4:61323207-61323226 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG - chr6_4:61323672-61323691 Msa0992490:intron 35.0%
GAAACTGTATTGTGTGAGTA+AGG - chr6_4:61323694-61323713 Msa0992490:intron 35.0%
CACCATCAACATTCATGTAA+GGG + chr6_4:61323957-61323976 None:intergenic 35.0%
TCACCATCAACATTCATGTA+AGG + chr6_4:61323958-61323977 None:intergenic 35.0%
TTACATTTCCAACTTGAGAC+TGG + chr6_4:61324093-61324112 None:intergenic 35.0%
CACAAGCAAATGTCAATATG+TGG - chr6_4:61324398-61324417 Msa0992490:CDS 35.0%
CAGAAGATTCCTTTACTCAT+AGG - chr6_4:61324462-61324481 Msa0992490:CDS 35.0%
TACAGGTCTTGATGTTGAAA+TGG - chr6_4:61324499-61324518 Msa0992490:intron 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG - chr6_4:61324575-61324594 Msa0992490:intron 35.0%
!!! TTGTGTTTTTTGGCAGGTTA+TGG - chr6_4:61324622-61324641 Msa0992490:CDS 35.0%
GAAGATACTGCACATTCATA+GGG + chr6_4:61324906-61324925 None:intergenic 35.0%
AGTATCTTCCAAATACTCTG+CGG - chr6_4:61324917-61324936 Msa0992490:intron 35.0%
CAAATGTGATAGGATGATGA+TGG - chr6_4:61325025-61325044 Msa0992490:CDS 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG - chr6_4:61325084-61325103 Msa0992490:CDS 35.0%
GAAAATGTACTTGGGTAAAC+AGG - chr6_4:61325267-61325286 Msa0992490:intron 35.0%
!! TCATTGATGATGGTAGTTTG+GGG - chr6_4:61325348-61325367 Msa0992490:CDS 35.0%
CAAGTTAGTGACACTTGTTT+AGG - chr6_4:61325485-61325504 Msa0992490:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG - chr6_4:61325504-61325523 Msa0992490:intron 35.0%
GGAATTCCTCAACAATAGTT+AGG + chr6_4:61325513-61325532 None:intergenic 35.0%
AACTATTGTTGAGGAATTCC+TGG - chr6_4:61325513-61325532 Msa0992490:intron 35.0%
ACTATTGTTGAGGAATTCCT+GGG - chr6_4:61325514-61325533 Msa0992490:intron 35.0%
TAAAAGAGGAAAAATACCCC+AGG + chr6_4:61325534-61325553 None:intergenic 35.0%
CTCCCAAAACTAACTAAAAG+AGG + chr6_4:61325548-61325567 None:intergenic 35.0%
! GAGTAATGATTTTGCTTTGC+AGG - chr6_4:61325694-61325713 Msa0992490:CDS 35.0%
TCAGTATTCAAGTCACCAAA+AGG + chr6_4:61325740-61325759 None:intergenic 35.0%
ACTTGAATACTGAAGCAGAA+AGG - chr6_4:61325747-61325766 Msa0992490:CDS 35.0%
! TAAAATGGTCTTACAGCCAA+CGG + chr6_4:61325930-61325949 None:intergenic 35.0%
CAAAAGAGTTGCTGTAGTTT+GGG + chr6_4:61325974-61325993 None:intergenic 35.0%
TCAAAAGAGTTGCTGTAGTT+TGG + chr6_4:61325975-61325994 None:intergenic 35.0%
! TCTTTTGATGTCTTCATTCG+AGG - chr6_4:61325987-61326006 Msa0992490:CDS 35.0%
! GCACGCAATTAATCATGTTT+TGG - chr6_4:61326065-61326084 Msa0992490:exon 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG - chr6_4:61326124-61326143 Msa0992490:intron 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG - chr6_4:61326125-61326144 Msa0992490:intron 35.0%
! CTATTCAATCCTTGTTGCTT+AGG - chr6_4:61326167-61326186 Msa0992490:intron 35.0%
CTTTGTTAATACGGGTGTTT+AGG - chr6_4:61326339-61326358 Msa0992490:intron 35.0%
! AAGTAAGTCCAAGGCATTAT+TGG + chr6_4:61326659-61326678 None:intergenic 35.0%
TGTTTGGAAAAGTAAGTCCA+AGG + chr6_4:61326668-61326687 None:intergenic 35.0%
! TTCTATTTTCACCGTCAACT+TGG - chr6_4:61326720-61326739 Msa0992490:intron 35.0%
!!! TTAAGATCTTTTGGAGCTGA+TGG - chr6_4:61326979-61326998 Msa0992490:five_prime_UTR 35.0%
TGAGAGTTTCGGAGAAATGA+GGG + chr6_4:61322060-61322079 None:intergenic 40.0%
ATGAGAGTTTCGGAGAAATG+AGG + chr6_4:61322061-61322080 None:intergenic 40.0%
AAGAAGAACGAGATTGGAGA+TGG + chr6_4:61322125-61322144 None:intergenic 40.0%
CTACCAATAGAGGAAATCGA+AGG + chr6_4:61322227-61322246 None:intergenic 40.0%
ATCATATATGGTGCAGTCAC+TGG + chr6_4:61322934-61322953 None:intergenic 40.0%
AATCATTGAGAGCCTCAACT+CGG + chr6_4:61323282-61323301 None:intergenic 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr6_4:61323526-61323545 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr6_4:61323525-61323544 Msa0992490:intron 40.0%
ATCATAACCAACCTGTTGTG+AGG + chr6_4:61323539-61323558 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG + chr6_4:61323688-61323707 None:intergenic 40.0%
ATTAATCGGCAGAGTAGGAA+TGG + chr6_4:61323720-61323739 None:intergenic 40.0%
TCGATATTAATCGGCAGAGT+AGG + chr6_4:61323725-61323744 None:intergenic 40.0%
! TACTCTGCCGATTAATATCG+AGG - chr6_4:61323724-61323743 Msa0992490:intron 40.0%
GCAGCATCCTCGATATTAAT+CGG + chr6_4:61323734-61323753 None:intergenic 40.0%
TGAAATTGAGAAGGCCATTC+AGG - chr6_4:61323766-61323785 Msa0992490:intron 40.0%
CTACAATCAAGATGAGAGTG+TGG - chr6_4:61323841-61323860 Msa0992490:intron 40.0%
CTCCCTTACATGAATGTTGA+TGG - chr6_4:61323952-61323971 Msa0992490:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG - chr6_4:61323973-61323992 Msa0992490:intron 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG - chr6_4:61323977-61323996 Msa0992490:intron 40.0%
! ACAACTTGTTCGTGTGAATC+AGG - chr6_4:61324003-61324022 Msa0992490:intron 40.0%
!! CGGAAAATTCCTTGATTTGC+TGG + chr6_4:61324067-61324086 None:intergenic 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG - chr6_4:61324166-61324185 Msa0992490:CDS 40.0%
! ATGCATTTTGCGGTGTGATA+CGG - chr6_4:61324221-61324240 Msa0992490:intron 40.0%
CTAGATCCAGCAATCAACTT+AGG + chr6_4:61324305-61324324 None:intergenic 40.0%
TTGATTGCTGGATCTAGTGA+GGG - chr6_4:61324308-61324327 Msa0992490:intron 40.0%
TCTTTAGGCTGGACTACAAA+GGG - chr6_4:61324342-61324361 Msa0992490:intron 40.0%
GACATTTGCTTGTGAAGTTG+AGG + chr6_4:61324392-61324411 None:intergenic 40.0%
!!! TTTGGCCGTGTTTTTGAGAT+TGG - chr6_4:61324425-61324444 Msa0992490:CDS 40.0%
CAGGACCAATCTCAAAAACA+CGG + chr6_4:61324433-61324452 None:intergenic 40.0%
! GAATCTTCTGCTCTAAACAC+AGG + chr6_4:61324452-61324471 None:intergenic 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG - chr6_4:61324574-61324593 Msa0992490:intron 40.0%
! AACACCTTTAGGGGTTCAAA+CGG + chr6_4:61324734-61324753 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG + chr6_4:61324907-61324926 None:intergenic 40.0%
! TATGTAAGCCGCAGAGTATT+TGG + chr6_4:61324928-61324947 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG - chr6_4:61324951-61324970 Msa0992490:intron 40.0%
!! ATGTGATAGGATGATGATGG+CGG - chr6_4:61325028-61325047 Msa0992490:CDS 40.0%
GACAGGGATAAAAGACGTAA+AGG + chr6_4:61325062-61325081 None:intergenic 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG - chr6_4:61325104-61325123 Msa0992490:CDS 40.0%
CTATTGTTGAGGAATTCCTG+GGG - chr6_4:61325515-61325534 Msa0992490:intron 40.0%
TCATTACTCGCTGCTAAACA+AGG + chr6_4:61325683-61325702 None:intergenic 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG - chr6_4:61325701-61325720 Msa0992490:CDS 40.0%
! GGAGTAGAGATTGAACCTTT+TGG - chr6_4:61325722-61325741 Msa0992490:CDS 40.0%
ACTGAAGCAGAAAGGAAACT+AGG - chr6_4:61325755-61325774 Msa0992490:CDS 40.0%
CAGAGTTCTATATCCTTCAC+CGG - chr6_4:61325901-61325920 Msa0992490:CDS 40.0%
! AAAATGGTCTTACAGCCAAC+GGG + chr6_4:61325929-61325948 None:intergenic 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG + chr6_4:61325960-61325979 None:intergenic 40.0%
! ACACATTTGGAGAAGCATGA+TGG + chr6_4:61326097-61326116 None:intergenic 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG + chr6_4:61326128-61326147 None:intergenic 40.0%
TTAGGCGAGGAGATAATATC+AGG - chr6_4:61326185-61326204 Msa0992490:intron 40.0%
! TATCCACGTGCCTGAATTTT+TGG - chr6_4:61326217-61326236 Msa0992490:intron 40.0%
GCACGTTCTTCCAAAAATTC+AGG + chr6_4:61326230-61326249 None:intergenic 40.0%
!! CTGCTTACATCGATTCTTTC+AGG - chr6_4:61326282-61326301 Msa0992490:intron 40.0%
ATAACCAGAGCTCAGTAAGA+GGG + chr6_4:61326369-61326388 None:intergenic 40.0%
TATAACCAGAGCTCAGTAAG+AGG + chr6_4:61326370-61326389 None:intergenic 40.0%
ATGCAGTTCTATATGAAGCG+GGG + chr6_4:61326812-61326831 None:intergenic 40.0%
CATGCAGTTCTATATGAAGC+GGG + chr6_4:61326813-61326832 None:intergenic 40.0%
GCATGCAGTTCTATATGAAG+CGG + chr6_4:61326814-61326833 None:intergenic 40.0%
! TTACCACACCCACTTTGAAA+AGG - chr6_4:61326844-61326863 Msa0992490:intron 40.0%
GGAGTGAGTGATGAGAGTTT+CGG + chr6_4:61322071-61322090 None:intergenic 45.0%
GGCGAAGAAGAAAAAGAACG+CGG + chr6_4:61322097-61322116 None:intergenic 45.0%
! CGTTTATTGGGTTGCCTACT+AGG - chr6_4:61322387-61322406 Msa0992490:three_prime_UTR 45.0%
AATGCAATGGGGTTGGAATG+AGG - chr6_4:61322787-61322806 Msa0992490:intron 45.0%
ATGCAATGGGGTTGGAATGA+GGG - chr6_4:61322788-61322807 Msa0992490:intron 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr6_4:61323096-61323115 Msa0992490:intron 45.0%
! GATCCCCTTGCTGTCAATTA+TGG - chr6_4:61323199-61323218 Msa0992490:CDS 45.0%
TTCGATTGGAGCTCAATGAG+CGG + chr6_4:61323232-61323251 None:intergenic 45.0%
TCCAGTCGTTGACATTGACA+GGG + chr6_4:61323258-61323277 None:intergenic 45.0%
ATCATTGAGAGCCTCAACTC+GGG + chr6_4:61323281-61323300 None:intergenic 45.0%
TGAGGCTCTCAATGATTCAC+TGG - chr6_4:61323285-61323304 Msa0992490:intron 45.0%
TGATTCACTGGAGAACAAGC+CGG - chr6_4:61323297-61323316 Msa0992490:intron 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr6_4:61323338-61323357 Msa0992490:CDS 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr6_4:61323430-61323449 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr6_4:61323429-61323448 Msa0992490:intron 45.0%
CGACATCGACAATAGACTCA+CGG + chr6_4:61323477-61323496 None:intergenic 45.0%
GAGTCTATTGTCGATGTCGA+AGG - chr6_4:61323478-61323497 Msa0992490:intron 45.0%
TATTGTCGATGTCGAAGGTG+TGG - chr6_4:61323483-61323502 Msa0992490:intron 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr6_4:61323512-61323531 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr6_4:61323511-61323530 Msa0992490:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr6_4:61323521-61323540 None:intergenic 45.0%
TTCCAACTTGAGACTGGATG+CGG + chr6_4:61324087-61324106 None:intergenic 45.0%
CAGCAATCAACTTAGGAGTG+TGG + chr6_4:61324298-61324317 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG - chr6_4:61324296-61324315 Msa0992490:intron 45.0%
GTTGATTGCTGGATCTAGTG+AGG - chr6_4:61324307-61324326 Msa0992490:intron 45.0%
GTCTTTAGGCTGGACTACAA+AGG - chr6_4:61324341-61324360 Msa0992490:intron 45.0%
GCACAGATGCCTATGAGTAA+AGG + chr6_4:61324474-61324493 None:intergenic 45.0%
TAAGAAGGATCTCGAAGCTG+TGG - chr6_4:61324697-61324716 Msa0992490:CDS 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG + chr6_4:61324733-61324752 None:intergenic 45.0%
CTGCGGCTTACATATGAAGA+AGG - chr6_4:61324934-61324953 Msa0992490:intron 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG - chr6_4:61325103-61325122 Msa0992490:CDS 45.0%
CTTCCAAAAATTCAGGCACG+TGG + chr6_4:61326223-61326242 None:intergenic 45.0%
TAACCAGAGCTCAGTAAGAG+GGG + chr6_4:61326368-61326387 None:intergenic 45.0%
AGATATGGTGTACCACCACA+CGG - chr6_4:61326446-61326465 Msa0992490:intron 45.0%
CGTGTAGTAATGCTCTTCTG+TGG - chr6_4:61326491-61326510 Msa0992490:intron 45.0%
ATCATGGTGCAATCCTGAGT+GGG + chr6_4:61326556-61326575 None:intergenic 45.0%
TCAGGCTTCAGTTGAATGTG+AGG + chr6_4:61326621-61326640 None:intergenic 45.0%
CACATTCAACTGAAGCCTGA+AGG - chr6_4:61326621-61326640 Msa0992490:intron 45.0%
! TAACACCAGCTCCAAGTTGA+CGG + chr6_4:61326734-61326753 None:intergenic 45.0%
AGAAGAAAAAGAACGCGGCG+AGG + chr6_4:61322092-61322111 None:intergenic 50.0%
ACGAGATTGGAGATGGTGTG+TGG + chr6_4:61322118-61322137 None:intergenic 50.0%
!! AGCTTAATGGGTTGCCCTCT+AGG - chr6_4:61322667-61322686 Msa0992490:intron 50.0%
TCAAGAGCCGACACTGTCAT+CGG - chr6_4:61323057-61323076 Msa0992490:intron 50.0%
GATCCTTCCGATGACAGTGT+CGG + chr6_4:61323067-61323086 None:intergenic 50.0%
!!! GCGTTGCTTTTCCAGCTTTG+CGG + chr6_4:61323125-61323144 None:intergenic 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr6_4:61323170-61323189 None:intergenic 50.0%
TCGATTGGAGCTCAATGAGC+GGG + chr6_4:61323231-61323250 None:intergenic 50.0%
CATTGACAGGGGTCTTCGAT+TGG + chr6_4:61323246-61323265 None:intergenic 50.0%
CCAGTCGTTGACATTGACAG+GGG + chr6_4:61323257-61323276 None:intergenic 50.0%
GTCCAGTCGTTGACATTGAC+AGG + chr6_4:61323259-61323278 None:intergenic 50.0%
! AACAAGCCGGTTCTAATCCG+TGG - chr6_4:61323310-61323329 Msa0992490:intron 50.0%
! ACAAGCCGGTTCTAATCCGT+GGG - chr6_4:61323311-61323330 Msa0992490:intron 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr6_4:61323337-61323356 Msa0992490:CDS 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr6_4:61323348-61323367 Msa0992490:CDS 50.0%
AACGCCATCTTCTTCCCAAC+TGG + chr6_4:61323355-61323374 None:intergenic 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr6_4:61323393-61323412 Msa0992490:intron 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr6_4:61323404-61323423 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr6_4:61323445-61323464 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG + chr6_4:61323467-61323486 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr6_4:61323529-61323548 Msa0992490:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG + chr6_4:61324057-61324076 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG - chr6_4:61324055-61324074 Msa0992490:intron 50.0%
TTCCGCATCCAGTCTCAAGT+TGG - chr6_4:61324082-61324101 Msa0992490:intron 50.0%
TTTGCGGTGTGATACGGTGT+TGG - chr6_4:61324227-61324246 Msa0992490:intron 50.0%
TTGCGGTGTGATACGGTGTT+GGG - chr6_4:61324228-61324247 Msa0992490:intron 50.0%
ATTGCTGGATCTAGTGAGGG+TGG - chr6_4:61324311-61324330 Msa0992490:intron 50.0%
AGGCATCTGTGCGAGTTTAC+AGG - chr6_4:61324482-61324501 Msa0992490:intron 50.0%
GTACCCGTTTGAACCCCTAA+AGG - chr6_4:61324727-61324746 Msa0992490:CDS 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG - chr6_4:61325099-61325118 Msa0992490:CDS 50.0%
AGAAAGGAAACTAGGCCAGC+TGG - chr6_4:61325763-61325782 Msa0992490:CDS 50.0%
! CAATCCTTGTTGCTTAGGCG+AGG - chr6_4:61326172-61326191 Msa0992490:intron 50.0%
ATCTCCTCGCCTAAGCAACA+AGG + chr6_4:61326179-61326198 None:intergenic 50.0%
GAAGAACGTGCACAAGCTTG+CGG - chr6_4:61326239-61326258 Msa0992490:intron 50.0%
TTTATCCACGTGACCCACTC+AGG - chr6_4:61326540-61326559 Msa0992490:intron 50.0%
CATCATGGTGCAATCCTGAG+TGG + chr6_4:61326557-61326576 None:intergenic 50.0%
GCTTGACGCCAATAATGCCT+TGG - chr6_4:61326648-61326667 Msa0992490:intron 50.0%
TTTCACCGTCAACTTGGAGC+TGG - chr6_4:61326726-61326745 Msa0992490:intron 50.0%
! GGTCCTTTTCAAAGTGGGTG+TGG + chr6_4:61326850-61326869 None:intergenic 50.0%
GTGATGTGATGCCTCTGTGC+TGG - chr6_4:61322612-61322631 Msa0992490:CDS 55.0%
CTTTGCGGCATCCTTCTTGG+AGG + chr6_4:61323110-61323129 None:intergenic 55.0%
CAGCTTTGCGGCATCCTTCT+TGG + chr6_4:61323113-61323132 None:intergenic 55.0%
CAAGAAGGATGCCGCAAAGC+TGG - chr6_4:61323111-61323130 Msa0992490:intron 55.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr6_4:61323164-61323183 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr6_4:61323167-61323186 None:intergenic 55.0%
CCCCTGTCAATGTCAACGAC+TGG - chr6_4:61323254-61323273 Msa0992490:intron 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr6_4:61323330-61323349 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr6_4:61323399-61323418 Msa0992490:intron 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr6_4:61323517-61323536 None:intergenic 55.0%
! GGTGTGATACGGTGTTGGGT+AGG - chr6_4:61324232-61324251 Msa0992490:intron 55.0%
AGGGTGGAGCTGCTGTCTTT+AGG - chr6_4:61324327-61324346 Msa0992490:intron 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG - chr6_4:61324331-61324350 Msa0992490:intron 55.0%
GAAGTTGAGGTGACTGAGCC+AGG + chr6_4:61324379-61324398 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG - chr6_4:61325911-61325930 Msa0992490:CDS 55.0%
GTCTTACAGCCAACGGGTAC+CGG + chr6_4:61325923-61325942 None:intergenic 55.0%
TGCACAAGCTTGCGGCATTG+AGG - chr6_4:61326247-61326266 Msa0992490:intron 55.0%
TATGGTGTACCACCACACGG+TGG - chr6_4:61326449-61326468 Msa0992490:intron 55.0%
TGGCGTCAAGCTACACCTTC+AGG + chr6_4:61326639-61326658 None:intergenic 55.0%
GAGCCGACACTGTCATCGGA+AGG - chr6_4:61323061-61323080 Msa0992490:intron 60.0%
CAACGACTGGACCCGAGTTG+AGG - chr6_4:61323267-61323286 Msa0992490:intron 60.0%
! AGCCGGTTCTAATCCGTGGG+AGG - chr6_4:61323314-61323333 Msa0992490:intron 60.0%
! GCCGGTTCTAATCCGTGGGA+GGG - chr6_4:61323315-61323334 Msa0992490:intron 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr6_4:61323319-61323338 None:intergenic 60.0%
CAAAGGGCAACCTGCATGCC+TGG - chr6_4:61324358-61324377 Msa0992490:intron 60.0%
CTGCCCCTCTTACTGAGCTC+TGG - chr6_4:61326362-61326381 Msa0992490:intron 60.0%
GTACCACCACACGGTGGCTT+TGG - chr6_4:61326455-61326474 Msa0992490:intron 60.0%
ACTCCAAAGCCACCGTGTGG+TGG + chr6_4:61326461-61326480 None:intergenic 60.0%
CCTACTCCAAAGCCACCGTG+TGG + chr6_4:61326464-61326483 None:intergenic 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG - chr6_4:61326461-61326480 Msa0992490:intron 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG - chr6_4:61326466-61326485 Msa0992490:intron 60.0%
GCAATCCTGAGTGGGTCACG+TGG + chr6_4:61326548-61326567 None:intergenic 60.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr6_4:61323150-61323169 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr6_4:61323161-61323180 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG + chr6_4:61323464-61323483 None:intergenic 65.0%
GGTGACTGAGCCAGGCATGC+AGG + chr6_4:61324371-61324390 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG + chr6_4:61325917-61325936 None:intergenic 65.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr6_4:61323147-61323166 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 61322037 61327083 61322037 ID=Msa0992490;Name=Msa0992490
chr6_4 mRNA 61322037 61327083 61322037 ID=Msa0992490-mRNA-1;Parent=Msa0992490;Name=Msa0992490-mRNA-1;_AED=0.18;_eAED=0.18;_QI=124|1|1|1|0.9|0.81|11|509|541
chr6_4 exon 61322037 61322672 61322037 ID=Msa0992490-mRNA-1:exon:11884;Parent=Msa0992490-mRNA-1
chr6_4 exon 61322817 61322931 61322817 ID=Msa0992490-mRNA-1:exon:11883;Parent=Msa0992490-mRNA-1
chr6_4 exon 61323112 61323227 61323112 ID=Msa0992490-mRNA-1:exon:11882;Parent=Msa0992490-mRNA-1
chr6_4 exon 61323325 61323404 61323325 ID=Msa0992490-mRNA-1:exon:11881;Parent=Msa0992490-mRNA-1
chr6_4 exon 61324148 61324201 61324148 ID=Msa0992490-mRNA-1:exon:11880;Parent=Msa0992490-mRNA-1
chr6_4 exon 61324372 61324482 61324372 ID=Msa0992490-mRNA-1:exon:11879;Parent=Msa0992490-mRNA-1
chr6_4 exon 61324576 61324866 61324576 ID=Msa0992490-mRNA-1:exon:11878;Parent=Msa0992490-mRNA-1
chr6_4 exon 61325012 61325125 61325012 ID=Msa0992490-mRNA-1:exon:11877;Parent=Msa0992490-mRNA-1
chr6_4 exon 61325333 61325443 61325333 ID=Msa0992490-mRNA-1:exon:11876;Parent=Msa0992490-mRNA-1
chr6_4 exon 61325574 61326088 61325574 ID=Msa0992490-mRNA-1:exon:11875;Parent=Msa0992490-mRNA-1
chr6_4 exon 61326968 61327083 61326968 ID=Msa0992490-mRNA-1:exon:11874;Parent=Msa0992490-mRNA-1
chr6_4 five_prime_UTR 61326968 61327083 61326968 ID=Msa0992490-mRNA-1:five_prime_utr;Parent=Msa0992490-mRNA-1
chr6_4 five_prime_UTR 61326081 61326088 61326081 ID=Msa0992490-mRNA-1:five_prime_utr;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61325574 61326080 61325574 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61325333 61325443 61325333 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61325012 61325125 61325012 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61324576 61324866 61324576 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61324372 61324482 61324372 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61324148 61324201 61324148 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61323325 61323404 61323325 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61323112 61323227 61323112 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61322817 61322931 61322817 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 CDS 61322546 61322672 61322546 ID=Msa0992490-mRNA-1:cds;Parent=Msa0992490-mRNA-1
chr6_4 three_prime_UTR 61322037 61322545 61322037 ID=Msa0992490-mRNA-1:three_prime_utr;Parent=Msa0992490-mRNA-1
Gene Sequence

>Msa0992490

ATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCGGAAGGATCAGAAACAAAAAGCAAAAAGGCCTCCAAGAAGGATGCCGCAAAGCTGGAAAAGCAACGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTCGAAGATGATCCCCTTGCTGTCAATTATGGTATTGTCCCGCTCATTGAGCTCCAATCGAAGACCCCTGTCAATGTCAACGACTGGACCCGAGTTGAGGCTCTCAATGATTCACTGGAGAACAAGCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCGTTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTCGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGAAATCCAAGTGAGGAAACTGTATTGTGTGAGTAAGGCCATTCCTACTCTGCCGATTAATATCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCCATTCAGGCTGGTGAACAACTTGTTCGTGTGAATCAGGATACACGATTGAATTTTAGAGTACTTGACCTGCGAACACCAGCAAATCAAGGAATTTTCCGCATCCAGTCTCAAGTTGGAAATGCGTTCAGACAATTTTTATTAGCTGAAAGCTTTGTTGAAATCCACACTCCTAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTCTTTAGGCTGGACTACAAAGGGCAACCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGTCAATATGTGGTGATTTTGGCCGTGTTTTTGAGATTGGTCCTGTGTTTAGAGCAGAAGATTCCTTTACTCATAGGCATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAACATTATTATGAGGTTATGGATGTAGTTGACAAATTGTTTGTTGCTATGTTTGACACTTTGAACACAAAATGTAAGAAGGATCTCGAAGCTGTGGCAAATCAGTACCCGTTTGAACCCCTAAAGTATCTTCCAAATACTCTGCGGCTTACATATGAAGAAGGTATTCAGATGCTCAAGGAAGTTGGAGTAGAGATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAGCTGGTTTTAGAAAAGTATGGAACAGAGTTCTATATCCTTCACCGGTACCCGTTGGCTGTAAGACCATTTTATACAATGCCTTGCTATGACAACCCAAACTACAGCAACTCTTTTGATGTCTTCATTCGAGGCGAGGAGATAATATCAGGAGCTCAGCGTATCCACGTGCCTGAATTTTTGGAAGAACGTGCACAAGCTTGCGGCATTGAGGTCAAGACAATATCTGCTTACATCGATTCTTTCAGATATGGTGTACCACCACACGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCTTGAACAACATTCGCAAAACATCACTTTATCCACGTGACCCACTCAGGATTGCACCATGA

Protein sequence

>Msa0992490

MSTSESQEPTLSSEGSETKSKKASKKDAAKLEKQRRREVAAATSATSTLSVEDDPLAVNYGIVPLIELQSKTPVNVNDWTRVEALNDSLENKPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVEIQVRKLYCVSKAIPTLPINIEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQVGNAFRQFLLAESFVEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKKHYYEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHVPEFLEERAQACGIEVKTISAYIDSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP*