Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579370 | GAU32879.1 | 75.581 | 86 | 21 | 0 | 1 | 86 | 1 | 86 | 2.62e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579370 | A0A2Z6NMK5 | 75.581 | 86 | 21 | 0 | 1 | 86 | 1 | 86 | 1.25e-36 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0579370 | -0.849083 | 4.061018e-60 | -8.615850e-47 |
| Msa0006880 | Msa0579370 | 0.817295 | 3.551944e-52 | -8.615850e-47 |
| Msa0010820 | Msa0579370 | 0.830425 | 2.957466e-55 | -8.615850e-47 |
| Msa0026660 | Msa0579370 | 0.803481 | 3.414939e-49 | -8.615850e-47 |
| Msa0027580 | Msa0579370 | 0.810497 | 1.119420e-50 | -8.615850e-47 |
| Msa0029260 | Msa0579370 | 0.807437 | 5.056472e-50 | -8.615850e-47 |
| Msa0032610 | Msa0579370 | 0.818530 | 1.868727e-52 | -8.615850e-47 |
| Msa0036370 | Msa0579370 | 0.836461 | 9.229847e-57 | -8.615850e-47 |
| Msa0037200 | Msa0579370 | 0.819863 | 9.288249e-53 | -8.615850e-47 |
| Msa0052860 | Msa0579370 | 0.805747 | 1.149561e-49 | -8.615850e-47 |
| Msa0054720 | Msa0579370 | -0.807541 | 4.805914e-50 | -8.615850e-47 |
| Msa0055150 | Msa0579370 | 0.822502 | 2.289126e-53 | -8.615850e-47 |
| Msa0057140 | Msa0579370 | 0.809706 | 1.657588e-50 | -8.615850e-47 |
| Msa0061970 | Msa0579370 | 0.803346 | 3.641995e-49 | -8.615850e-47 |
| Msa0072170 | Msa0579370 | 0.870067 | 1.930134e-66 | -8.615850e-47 |
| Msa0075340 | Msa0579370 | 0.810938 | 8.985745e-51 | -8.615850e-47 |
| Msa0087290 | Msa0579370 | 0.803657 | 3.139215e-49 | -8.615850e-47 |
| Msa0090030 | Msa0579370 | 0.842350 | 2.728681e-58 | -8.615850e-47 |
| Msa0095010 | Msa0579370 | 0.807579 | 4.718182e-50 | -8.615850e-47 |
| Msa0099510 | Msa0579370 | 0.813874 | 2.052505e-51 | -8.615850e-47 |
| Msa0100800 | Msa0579370 | 0.827305 | 1.683696e-54 | -8.615850e-47 |
| Msa0115460 | Msa0579370 | 0.800210 | 1.603758e-48 | -8.615850e-47 |
| Msa0120540 | Msa0579370 | 0.867124 | 1.724060e-65 | -8.615850e-47 |
| Msa0121820 | Msa0579370 | 0.810168 | 1.317846e-50 | -8.615850e-47 |
| Msa0130520 | Msa0579370 | 0.809201 | 2.126841e-50 | -8.615850e-47 |
| Msa0131450 | Msa0579370 | 0.814802 | 1.279987e-51 | -8.615850e-47 |
| Msa0138160 | Msa0579370 | 0.839884 | 1.212925e-57 | -8.615850e-47 |
| Msa0140400 | Msa0579370 | 0.805852 | 1.092972e-49 | -8.615850e-47 |
| Msa0140510 | Msa0579370 | -0.827392 | 1.604909e-54 | -8.615850e-47 |
| Msa0140520 | Msa0579370 | -0.853320 | 2.583641e-61 | -8.615850e-47 |
| Msa0145150 | Msa0579370 | 0.827064 | 1.922944e-54 | -8.615850e-47 |
| Msa0148120 | Msa0579370 | 0.813220 | 2.857910e-51 | -8.615850e-47 |
| Msa0165970 | Msa0579370 | 0.804412 | 2.187607e-49 | -8.615850e-47 |
| Msa0166750 | Msa0579370 | 0.817932 | 2.551638e-52 | -8.615850e-47 |
| Msa0168640 | Msa0579370 | -0.811588 | 6.494245e-51 | -8.615850e-47 |
| Msa0169300 | Msa0579370 | 0.802437 | 5.612459e-49 | -8.615850e-47 |
| Msa0172780 | Msa0579370 | 0.817746 | 2.810760e-52 | -8.615850e-47 |
| Msa0175200 | Msa0579370 | 0.804772 | 1.839649e-49 | -8.615850e-47 |
| Msa0176330 | Msa0579370 | 0.815512 | 8.900119e-52 | -8.615850e-47 |
| Msa0178990 | Msa0579370 | 0.807967 | 3.902498e-50 | -8.615850e-47 |
| Msa0183460 | Msa0579370 | 0.814537 | 1.465018e-51 | -8.615850e-47 |
| Msa0190120 | Msa0579370 | 0.807758 | 4.322318e-50 | -8.615850e-47 |
| Msa0198940 | Msa0579370 | 0.816529 | 5.276472e-52 | -8.615850e-47 |
| Msa0208810 | Msa0579370 | 0.803451 | 3.464619e-49 | -8.615850e-47 |
| Msa0212750 | Msa0579370 | -0.817721 | 2.847730e-52 | -8.615850e-47 |
| Msa0219250 | Msa0579370 | -0.806891 | 6.598873e-50 | -8.615850e-47 |
| Msa0223290 | Msa0579370 | 0.804945 | 1.692935e-49 | -8.615850e-47 |
| Msa0223920 | Msa0579370 | 0.809495 | 1.839559e-50 | -8.615850e-47 |
| Msa0374250 | Msa0579370 | 0.802855 | 4.601028e-49 | -8.615850e-47 |
| Msa0377530 | Msa0579370 | 0.816593 | 5.104325e-52 | -8.615850e-47 |
| Msa0379410 | Msa0579370 | 0.841712 | 4.023706e-58 | -8.615850e-47 |
| Msa0381700 | Msa0579370 | 0.803283 | 3.754275e-49 | -8.615850e-47 |
| Msa0384540 | Msa0579370 | 0.829997 | 3.763206e-55 | -8.615850e-47 |
| Msa0385490 | Msa0579370 | 0.807510 | 4.880517e-50 | -8.615850e-47 |
| Msa0387910 | Msa0579370 | 0.852734 | 3.800446e-61 | -8.615850e-47 |
| Msa0404700 | Msa0579370 | 0.811722 | 6.074682e-51 | -8.615850e-47 |
| Msa0419520 | Msa0579370 | 0.823406 | 1.409148e-53 | -8.615850e-47 |
| Msa0419640 | Msa0579370 | -0.807865 | 4.101411e-50 | -8.615850e-47 |
| Msa0421260 | Msa0579370 | 0.826216 | 3.063985e-54 | -8.615850e-47 |
| Msa0426810 | Msa0579370 | 0.827025 | 1.964112e-54 | -8.615850e-47 |
| Msa0436190 | Msa0579370 | 0.817248 | 3.639322e-52 | -8.615850e-47 |
| Msa0449820 | Msa0579370 | 0.803024 | 4.246264e-49 | -8.615850e-47 |
| Msa0462540 | Msa0579370 | 0.814079 | 1.849407e-51 | -8.615850e-47 |
| Msa0465550 | Msa0579370 | 0.806562 | 7.746730e-50 | -8.615850e-47 |
| Msa0467220 | Msa0579370 | 0.829737 | 4.353926e-55 | -8.615850e-47 |
| Msa0467960 | Msa0579370 | -0.807693 | 4.461839e-50 | -8.615850e-47 |
| Msa0468130 | Msa0579370 | 0.816269 | 6.032745e-52 | -8.615850e-47 |
| Msa0475240 | Msa0579370 | 0.810494 | 1.120825e-50 | -8.615850e-47 |
| Msa0479040 | Msa0579370 | 0.803382 | 3.580100e-49 | -8.615850e-47 |
| Msa0479090 | Msa0579370 | 0.840100 | 1.065257e-57 | -8.615850e-47 |
| Msa0239940 | Msa0579370 | 0.827596 | 1.433656e-54 | -8.615850e-47 |
| Msa0241740 | Msa0579370 | 0.816160 | 6.382547e-52 | -8.615850e-47 |
| Msa0252240 | Msa0579370 | 0.822199 | 2.691264e-53 | -8.615850e-47 |
| Msa0258880 | Msa0579370 | -0.805011 | 1.640328e-49 | -8.615850e-47 |
| Msa0265160 | Msa0579370 | 0.818345 | 2.057859e-52 | -8.615850e-47 |
| Msa0266210 | Msa0579370 | 0.883676 | 3.666375e-71 | -8.615850e-47 |
| Msa0275400 | Msa0579370 | -0.814021 | 1.904483e-51 | -8.615850e-47 |
| Msa0279210 | Msa0579370 | -0.827126 | 1.857937e-54 | -8.615850e-47 |
| Msa0287670 | Msa0579370 | 0.885658 | 6.727899e-72 | -8.615850e-47 |
| Msa0288730 | Msa0579370 | 0.802691 | 4.976146e-49 | -8.615850e-47 |
| Msa0302650 | Msa0579370 | 0.804660 | 1.941261e-49 | -8.615850e-47 |
| Msa0304290 | Msa0579370 | 0.800244 | 1.578605e-48 | -8.615850e-47 |
| Msa0304330 | Msa0579370 | 0.801751 | 7.766284e-49 | -8.615850e-47 |
| Msa0307560 | Msa0579370 | 0.800298 | 1.539084e-48 | -8.615850e-47 |
| Msa0308200 | Msa0579370 | 0.849088 | 4.046294e-60 | -8.615850e-47 |
| Msa0308220 | Msa0579370 | 0.829383 | 5.307331e-55 | -8.615850e-47 |
| Msa0318970 | Msa0579370 | -0.813116 | 3.011582e-51 | -8.615850e-47 |
| Msa0347610 | Msa0579370 | 0.802043 | 6.764764e-49 | -8.615850e-47 |
| Msa0361010 | Msa0579370 | 0.807913 | 4.007545e-50 | -8.615850e-47 |
| Msa0362060 | Msa0579370 | 0.817944 | 2.534957e-52 | -8.615850e-47 |
| Msa0363170 | Msa0579370 | 0.804178 | 2.447250e-49 | -8.615850e-47 |
| Msa0489610 | Msa0579370 | 0.818127 | 2.305606e-52 | -8.615850e-47 |
| Msa0493920 | Msa0579370 | 0.821626 | 3.653295e-53 | -8.615850e-47 |
| Msa0505060 | Msa0579370 | 0.803855 | 2.856955e-49 | -8.615850e-47 |
| Msa0511490 | Msa0579370 | 0.804885 | 1.742953e-49 | -8.615850e-47 |
| Msa0517490 | Msa0579370 | 0.807722 | 4.398440e-50 | -8.615850e-47 |
| Msa0524600 | Msa0579370 | 0.828179 | 1.037962e-54 | -8.615850e-47 |
| Msa0527910 | Msa0579370 | 0.825318 | 5.005485e-54 | -8.615850e-47 |
| Msa0534900 | Msa0579370 | 0.800816 | 1.206697e-48 | -8.615850e-47 |
| Msa0553220 | Msa0579370 | -0.812838 | 3.465285e-51 | -8.615850e-47 |
| Msa0556790 | Msa0579370 | 0.800757 | 1.240776e-48 | -8.615850e-47 |
| Msa0578090 | Msa0579370 | 0.843034 | 1.795823e-58 | -8.615850e-47 |
| Msa0579350 | Msa0579370 | 0.853389 | 2.468746e-61 | -8.615850e-47 |
| Msa0579370 | Msa0586850 | 0.835471 | 1.645940e-56 | -8.615850e-47 |
| Msa0579370 | Msa0590650 | 0.803914 | 2.776953e-49 | -8.615850e-47 |
| Msa0579370 | Msa0602370 | 0.828412 | 9.118596e-55 | -8.615850e-47 |
| Msa0579370 | Msa0607290 | -0.801586 | 8.396517e-49 | -8.615850e-47 |
| Msa0579370 | Msa0607510 | 0.816912 | 4.329053e-52 | -8.615850e-47 |
| Msa0579370 | Msa0609970 | 0.855279 | 7.020147e-62 | -8.615850e-47 |
| Msa0579370 | Msa0614990 | 0.940428 | 2.373620e-100 | -8.615850e-47 |
| Msa0579370 | Msa0618200 | -0.817685 | 2.901385e-52 | -8.615850e-47 |
| Msa0579370 | Msa0625790 | 0.814641 | 1.389370e-51 | -8.615850e-47 |
| Msa0579370 | Msa0626680 | 0.815037 | 1.135029e-51 | -8.615850e-47 |
| Msa0579370 | Msa0626940 | 0.807423 | 5.092408e-50 | -8.615850e-47 |
| Msa0579370 | Msa0628290 | 0.818474 | 1.923425e-52 | -8.615850e-47 |
| Msa0579370 | Msa0643320 | 0.818994 | 1.465734e-52 | -8.615850e-47 |
| Msa0579370 | Msa0650620 | 0.859542 | 3.847832e-63 | -8.615850e-47 |
| Msa0579370 | Msa0650730 | 0.834617 | 2.702275e-56 | -8.615850e-47 |
| Msa0579370 | Msa0657460 | -0.807175 | 5.746919e-50 | -8.615850e-47 |
| Msa0579370 | Msa0659140 | 0.811805 | 5.826332e-51 | -8.615850e-47 |
| Msa0579370 | Msa0664760 | 0.842157 | 3.068692e-58 | -8.615850e-47 |
| Msa0579370 | Msa0669720 | 0.822179 | 2.721161e-53 | -8.615850e-47 |
| Msa0579370 | Msa0669760 | 0.812010 | 5.257392e-51 | -8.615850e-47 |
| Msa0579370 | Msa0670270 | 0.814217 | 1.724116e-51 | -8.615850e-47 |
| Msa0579370 | Msa0679550 | 0.801513 | 8.691901e-49 | -8.615850e-47 |
| Msa0579370 | Msa0683140 | 0.824033 | 1.005056e-53 | -8.615850e-47 |
| Msa0579370 | Msa0683600 | 0.811803 | 5.831287e-51 | -8.615850e-47 |
| Msa0579370 | Msa0693790 | 0.806499 | 7.985228e-50 | -8.615850e-47 |
| Msa0579370 | Msa0705100 | 0.802564 | 5.285562e-49 | -8.615850e-47 |
| Msa0579370 | Msa0705600 | 0.813905 | 2.020265e-51 | -8.615850e-47 |
| Msa0579370 | Msa0711490 | 0.821902 | 3.154260e-53 | -8.615850e-47 |
| Msa0579370 | Msa0713350 | 0.804052 | 2.598872e-49 | -8.615850e-47 |
| Msa0579370 | Msa0735310 | 0.807672 | 4.508167e-50 | -8.615850e-47 |
| Msa0579370 | Msa0755080 | 0.804702 | 1.902646e-49 | -8.615850e-47 |
| Msa0579370 | Msa0792090 | 0.825548 | 4.415337e-54 | -8.615850e-47 |
| Msa0579370 | Msa0793390 | 0.826033 | 3.386685e-54 | -8.615850e-47 |
| Msa0579370 | Msa0814250 | 0.821136 | 4.740508e-53 | -8.615850e-47 |
| Msa0579370 | Msa0820530 | -0.823792 | 1.144233e-53 | -8.615850e-47 |
| Msa0579370 | Msa0831870 | 0.811982 | 5.332227e-51 | -8.615850e-47 |
| Msa0579370 | Msa0834450 | 0.817436 | 3.300930e-52 | -8.615850e-47 |
| Msa0579370 | Msa0860900 | -0.805734 | 1.156780e-49 | -8.615850e-47 |
| Msa0579370 | Msa0879860 | 0.841057 | 5.983108e-58 | -8.615850e-47 |
| Msa0579370 | Msa0898860 | 0.810103 | 1.361072e-50 | -8.615850e-47 |
| Msa0579370 | Msa0905380 | 0.819205 | 1.312515e-52 | -8.615850e-47 |
| Msa0579370 | Msa0908170 | 0.806302 | 8.785073e-50 | -8.615850e-47 |
| Msa0579370 | Msa0921870 | 0.801064 | 1.073854e-48 | -8.615850e-47 |
| Msa0579370 | Msa0924150 | -0.813626 | 2.326641e-51 | -8.615850e-47 |
| Msa0579370 | Msa0928010 | 0.844268 | 8.396988e-59 | -8.615850e-47 |
| Msa0579370 | Msa0928030 | 0.823168 | 1.601588e-53 | -8.615850e-47 |
| Msa0579370 | Msa0929960 | -0.801553 | 8.530020e-49 | -8.615850e-47 |
| Msa0579370 | Msa0930140 | 0.800468 | 1.421352e-48 | -8.615850e-47 |
| Msa0579370 | Msa0937330 | 0.833522 | 5.082907e-56 | -8.615850e-47 |
| Msa0579370 | Msa0944730 | 0.819674 | 1.026107e-52 | -8.615850e-47 |
| Msa0579370 | Msa0945100 | 0.827738 | 1.325064e-54 | -8.615850e-47 |
| Msa0579370 | Msa0957450 | -0.825371 | 4.861448e-54 | -8.615850e-47 |
| Msa0579370 | Msa0993240 | 0.836420 | 9.456285e-57 | -8.615850e-47 |
| Msa0579370 | Msa1002600 | -0.809253 | 2.073259e-50 | -8.615850e-47 |
| Msa0579370 | Msa1029080 | -0.830080 | 3.591719e-55 | -8.615850e-47 |
| Msa0579370 | Msa1069660 | -0.829427 | 5.179763e-55 | -8.615850e-47 |
| Msa0579370 | Msa1073400 | 0.807403 | 5.142826e-50 | -8.615850e-47 |
| Msa0579370 | Msa1088290 | 0.830758 | 2.451525e-55 | -8.615850e-47 |
| Msa0579370 | Msa1089840 | 0.809993 | 1.437555e-50 | -8.615850e-47 |
| Msa0579370 | Msa1093330 | 0.812765 | 3.595148e-51 | -8.615850e-47 |
| Msa0579370 | Msa1094430 | 0.851800 | 7.008560e-61 | -8.615850e-47 |
| Msa0579370 | Msa1113880 | 0.807119 | 5.904499e-50 | -8.615850e-47 |
| Msa0579370 | Msa1126120 | -0.830635 | 2.628480e-55 | -8.615850e-47 |
| Msa0579370 | Msa1126850 | 0.801332 | 9.466636e-49 | -8.615850e-47 |
| Msa0579370 | Msa1144970 | 0.824466 | 7.948116e-54 | -8.615850e-47 |
| Msa0579370 | Msa1156170 | -0.822425 | 2.385291e-53 | -8.615850e-47 |
| Msa0579370 | Msa1160360 | 0.801524 | 8.645016e-49 | -8.615850e-47 |
| Msa0579370 | Msa1164020 | 0.818586 | 1.814815e-52 | -8.615850e-47 |
| Msa0579370 | Msa1172130 | -0.800655 | 1.301760e-48 | -8.615850e-47 |
| Msa0579370 | Msa1176360 | 0.821316 | 4.307229e-53 | -8.615850e-47 |
| Msa0579370 | Msa1182630 | 0.803939 | 2.743921e-49 | -8.615850e-47 |
| Msa0579370 | Msa1182640 | 0.812613 | 3.882739e-51 | -8.615850e-47 |
| Msa0579370 | Msa1229850 | 0.833752 | 4.452744e-56 | -8.615850e-47 |
| Msa0579370 | Msa1236070 | -0.826308 | 2.913251e-54 | -8.615850e-47 |
| Msa0579370 | Msa1253810 | 0.814865 | 1.239446e-51 | -8.615850e-47 |
| Msa0579370 | Msa1267260 | 0.811159 | 8.046442e-51 | -8.615850e-47 |
| Msa0579370 | Msa1269300 | 0.805618 | 1.223503e-49 | -8.615850e-47 |
| Msa0579370 | Msa1270960 | -0.804473 | 2.124331e-49 | -8.615850e-47 |
| Msa0579370 | Msa1272520 | 0.835757 | 1.393479e-56 | -8.615850e-47 |
| Msa0579370 | Msa1282920 | 0.813717 | 2.222554e-51 | -8.615850e-47 |
| Msa0579370 | Msa1293480 | -0.827398 | 1.599333e-54 | -8.615850e-47 |
| Msa0579370 | Msa1307740 | 0.800306 | 1.533014e-48 | -8.615850e-47 |
| Msa0579370 | Msa1308080 | -0.807381 | 5.198535e-50 | -8.615850e-47 |
| Msa0579370 | Msa1310660 | 0.814619 | 1.405087e-51 | -8.615850e-47 |
| Msa0579370 | Msa1338610 | 0.839524 | 1.505456e-57 | -8.615850e-47 |
| Msa0579370 | Msa1350690 | 0.883668 | 3.692252e-71 | -8.615850e-47 |
| Msa0579370 | Msa1355700 | 0.815699 | 8.084883e-52 | -8.615850e-47 |
| Msa0579370 | Msa1360280 | 0.863874 | 1.823284e-64 | -8.615850e-47 |
| Msa0579370 | Msa1363700 | 0.845984 | 2.887549e-59 | -8.615850e-47 |
| Msa0579370 | Msa1365860 | 0.805151 | 1.532910e-49 | -8.615850e-47 |
| Msa0579370 | Msa1371090 | 0.844488 | 7.327619e-59 | -8.615850e-47 |
| Msa0579370 | Msa1373800 | 0.803464 | 3.442797e-49 | -8.615850e-47 |
| Msa0579370 | Msa1383350 | 0.814293 | 1.658253e-51 | -8.615850e-47 |
| Msa0579370 | Msa1388860 | 0.804638 | 1.962316e-49 | -8.615850e-47 |
| Msa0579370 | Msa1390790 | 0.802788 | 4.750131e-49 | -8.615850e-47 |
| Msa0579370 | Msa1412930 | -0.808252 | 3.393591e-50 | -8.615850e-47 |
| Msa0579370 | Msa1417810 | -0.837250 | 5.806557e-57 | -8.615850e-47 |
| Msa0579370 | Msa1426920 | 0.820382 | 7.063598e-53 | -8.615850e-47 |
| Msa0579370 | Msa1442220 | -0.819344 | 1.220132e-52 | -8.615850e-47 |
| Msa0579370 | Msa1445400 | -0.836930 | 7.011021e-57 | -8.615850e-47 |
| Msa0579370 | Msa1449350 | -0.832391 | 9.711857e-56 | -8.615850e-47 |
| Msa0579370 | Msa1452470 | 0.817514 | 3.169423e-52 | -8.615850e-47 |
| Msa0579370 | Msa1459760 | -0.837386 | 5.360663e-57 | -8.615850e-47 |
| Msa0579370 | Msa1465960 | 0.854267 | 1.379026e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579370 | MtrunA17_Chr4g0042971 | 88.889 | 72 | 8 | 0 | 1 | 72 | 1 | 72 | 9.60e-39 | 126 |
| Msa0579370 | MtrunA17_Chr4g0042971 | 76.190 | 84 | 19 | 1 | 4 | 86 | 73 | 156 | 3.21e-36 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTGGTAGAAACTTATT+TGG | 0.193374 | 4_1:+84014849 | None:intergenic |
| GTTTCTACCAAGTGAGGTTT+TGG | 0.234806 | 4_1:-84014841 | Msa0579370:CDS |
| AGCACACCACCTTCGGATTT+AGG | 0.251846 | 4_1:+84014669 | None:intergenic |
| GAGAAGGTGTCAACTGCTGC+AGG | 0.400905 | 4_1:-84014765 | Msa0579370:CDS |
| TCCGAAGGTGGTGTGCTTGA+TGG | 0.441201 | 4_1:-84014663 | Msa0579370:CDS |
| ACCATCAAGCACACCACCTT+CGG | 0.487811 | 4_1:+84014662 | None:intergenic |
| CTGTAGTTGAGCATGTTGAC+AGG | 0.490478 | 4_1:-84014728 | Msa0579370:CDS |
| TCGGATTTAGGAGGCTCCTC+TGG | 0.493494 | 4_1:+84014681 | None:intergenic |
| GAGTCAGCAGAGACAACTGC+AGG | 0.516751 | 4_1:-84014798 | Msa0579370:CDS |
| GCACTCCCCAAAACCTCACT+TGG | 0.541506 | 4_1:+84014834 | None:intergenic |
| AAAGAAACAATGGCAGAAAG+TGG | 0.544848 | 4_1:-84014876 | None:intergenic |
| AAATAAGTTTCTACCAAGTG+AGG | 0.567992 | 4_1:-84014847 | Msa0579370:CDS |
| GGTGTCAACTGCTGCAGGGG+AGG | 0.571411 | 4_1:-84014760 | Msa0579370:CDS |
| TTTAGGAGGCTCCTCTGGTG+TGG | 0.573361 | 4_1:+84014686 | None:intergenic |
| AGAAGGTGTCAACTGCTGCA+GGG | 0.573757 | 4_1:-84014764 | Msa0579370:CDS |
| GAAGGTGTCAACTGCTGCAG+GGG | 0.582580 | 4_1:-84014763 | Msa0579370:CDS |
| ACACCACCTTCGGATTTAGG+AGG | 0.610944 | 4_1:+84014672 | None:intergenic |
| TGCAGGGAAACAATCTGAGA+AGG | 0.618025 | 4_1:-84014781 | Msa0579370:CDS |
| GAGGAGCCTCCTAAATCCGA+AGG | 0.645422 | 4_1:-84014678 | Msa0579370:CDS |
| TCATGTTCATTCCACACCAG+AGG | 0.674914 | 4_1:-84014697 | Msa0579370:CDS |
| GAGCCTCCTAAATCCGAAGG+TGG | 0.678300 | 4_1:-84014675 | Msa0579370:CDS |
| AGTCAGCAGAGACAACTGCA+GGG | 0.685909 | 4_1:-84014797 | Msa0579370:CDS |
| TGTAGTTGAGCATGTTGACA+GGG | 0.688044 | 4_1:-84014727 | Msa0579370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TCACTTGGTAGAAACTTATT+TGG | + | chr4_1:84014650-84014669 | None:intergenic | 30.0% | |
| AAATAAGTTTCTACCAAGTG+AGG | - | chr4_1:84014649-84014668 | Msa0579370:CDS | 30.0% | |
| ! | TTTCTACCAAGTGAGGTTTT+GGG | - | chr4_1:84014656-84014675 | Msa0579370:CDS | 35.0% |
| ! | GATGGTGTTAAAAAAGCTGT+TGG | - | chr4_1:84014851-84014870 | Msa0579370:CDS | 35.0% |
| ! | GTTTCTACCAAGTGAGGTTT+TGG | - | chr4_1:84014655-84014674 | Msa0579370:CDS | 40.0% |
| ! | TTCTACCAAGTGAGGTTTTG+GGG | - | chr4_1:84014657-84014676 | Msa0579370:CDS | 40.0% |
| TGTAGTTGAGCATGTTGACA+GGG | - | chr4_1:84014769-84014788 | Msa0579370:CDS | 40.0% | |
| GGTGTTAAAAAAGCTGTTGG+AGG | - | chr4_1:84014854-84014873 | Msa0579370:CDS | 40.0% | |
| TGCAGGGAAACAATCTGAGA+AGG | - | chr4_1:84014715-84014734 | Msa0579370:CDS | 45.0% | |
| CTGTAGTTGAGCATGTTGAC+AGG | - | chr4_1:84014768-84014787 | Msa0579370:CDS | 45.0% | |
| TCATGTTCATTCCACACCAG+AGG | - | chr4_1:84014799-84014818 | Msa0579370:CDS | 45.0% | |
| !!! | TGAGGTTTTGGGGAGTGCAA+AGG | - | chr4_1:84014667-84014686 | Msa0579370:CDS | 50.0% |
| !!! | GTTTTGGGGAGTGCAAAGGT+GGG | - | chr4_1:84014671-84014690 | Msa0579370:CDS | 50.0% |
| AGTCAGCAGAGACAACTGCA+GGG | - | chr4_1:84014699-84014718 | Msa0579370:CDS | 50.0% | |
| !! | AGAAGGTGTCAACTGCTGCA+GGG | - | chr4_1:84014732-84014751 | Msa0579370:CDS | 50.0% |
| ACACCACCTTCGGATTTAGG+AGG | + | chr4_1:84014827-84014846 | None:intergenic | 50.0% | |
| AGCACACCACCTTCGGATTT+AGG | + | chr4_1:84014830-84014849 | None:intergenic | 50.0% | |
| ACCATCAAGCACACCACCTT+CGG | + | chr4_1:84014837-84014856 | None:intergenic | 50.0% | |
| GCACTCCCCAAAACCTCACT+TGG | + | chr4_1:84014665-84014684 | None:intergenic | 55.0% | |
| !!! | GGTTTTGGGGAGTGCAAAGG+TGG | - | chr4_1:84014670-84014689 | Msa0579370:CDS | 55.0% |
| GAGTCAGCAGAGACAACTGC+AGG | - | chr4_1:84014698-84014717 | Msa0579370:CDS | 55.0% | |
| !! | GAGAAGGTGTCAACTGCTGC+AGG | - | chr4_1:84014731-84014750 | Msa0579370:CDS | 55.0% |
| !! | GAAGGTGTCAACTGCTGCAG+GGG | - | chr4_1:84014733-84014752 | Msa0579370:CDS | 55.0% |
| TTTAGGAGGCTCCTCTGGTG+TGG | + | chr4_1:84014813-84014832 | None:intergenic | 55.0% | |
| TCGGATTTAGGAGGCTCCTC+TGG | + | chr4_1:84014818-84014837 | None:intergenic | 55.0% | |
| GAGGAGCCTCCTAAATCCGA+AGG | - | chr4_1:84014818-84014837 | Msa0579370:CDS | 55.0% | |
| GAGCCTCCTAAATCCGAAGG+TGG | - | chr4_1:84014821-84014840 | Msa0579370:CDS | 55.0% | |
| TCCGAAGGTGGTGTGCTTGA+TGG | - | chr4_1:84014833-84014852 | Msa0579370:CDS | 55.0% | |
| GGTGTCAACTGCTGCAGGGG+AGG | - | chr4_1:84014736-84014755 | Msa0579370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 84014629 | 84014889 | 84014629 | ID=Msa0579370;Name=Msa0579370 |
| chr4_1 | mRNA | 84014629 | 84014889 | 84014629 | ID=Msa0579370-mRNA-1;Parent=Msa0579370;Name=Msa0579370-mRNA-1;_AED=0.51;_eAED=0.52;_QI=0|-1|0|1|-1|1|1|0|86 |
| chr4_1 | exon | 84014629 | 84014889 | 84014629 | ID=Msa0579370-mRNA-1:exon:30787;Parent=Msa0579370-mRNA-1 |
| chr4_1 | CDS | 84014629 | 84014889 | 84014629 | ID=Msa0579370-mRNA-1:cds;Parent=Msa0579370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
