AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661180 MtrunA17_Chr1g0150111 94.096 542 21 3 1 532 1 541 0.0 1009
Msa0661180 MtrunA17_Chr5g0410321 64.931 576 127 6 1 532 62 606 0.0 717
Msa0661180 MtrunA17_Chr8g0389541 30.605 281 175 8 262 529 275 548 8.48e-26 111
Msa0661180 MtrunA17_Chr7g0263951 31.206 282 174 10 262 529 325 600 6.59e-25 108
Msa0661180 MtrunA17_Chr2g0298001 23.577 492 327 15 72 524 107 588 2.08e-22 100
Msa0661180 MtrunA17_Chr8g0335841 22.490 498 296 18 81 524 111 572 4.84e-16 81.3
Msa0661180 MtrunA17_Chr4g0072181 23.188 345 229 11 200 511 32 373 1.96e-12 68.9
Msa0661180 MtrunA17_Chr4g0056151 42.466 73 42 0 455 527 57 129 5.90e-12 63.2
Msa0661180 MtrunA17_Chr4g0025921 27.559 254 151 9 83 324 72 304 8.70e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661180 AT4G31180.1 63.016 557 179 4 3 532 2 558 0.0 717
Msa0661180 AT4G31180.2 63.016 557 179 4 3 532 2 558 0.0 717
Msa0661180 AT4G26870.1 64.453 512 174 3 26 532 24 532 0.0 678
Msa0661180 AT5G56680.1 29.749 279 176 8 262 527 296 567 1.43e-26 114
Msa0661180 AT4G17300.2 25.322 466 253 15 113 527 161 582 3.76e-26 112
Msa0661180 AT4G17300.1 25.322 466 253 15 113 527 141 562 5.42e-26 112
Msa0661180 AT1G70980.1 28.214 280 181 7 262 527 293 566 1.04e-22 102
Msa0661180 AT3G11710.1 23.422 491 314 17 78 524 133 605 1.16e-18 89.7
Msa0661180 AT3G07420.1 24.535 269 189 8 266 525 368 631 1.39e-11 67.8

Find 170 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACATTGATTCTTTC+AGG 0.118251 4_3:-72393959 Msa0661180:intron
CATTGATGTCCCCAAGAATT+TGG 0.169294 4_3:-72397371 Msa0661180:five_prime_UTR
CAGCTTTGCGAGTTCCTTCT+TGG 0.187183 4_3:+72397249 None:intergenic
ATTCCAGCCGCTCCTATTAA+AGG 0.202914 4_3:-72396866 Msa0661180:CDS
CACAAGCAAATGTCAATATT+TGG 0.203397 4_3:-72395857 Msa0661180:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.255342 4_3:-72397004 Msa0661180:CDS
AAGTTGACATTGGAGGTTTC+CGG 0.264653 4_3:+72397323 None:intergenic
CAAACAAATTAACACCTTTA+GGG 0.270476 4_3:+72395514 None:intergenic
CTTAACAAAATTAATAAATA+AGG 0.276011 4_3:-72397814 None:intergenic
TCAAAAGAGTTACTGTAGTT+TGG 0.284688 4_3:+72394263 None:intergenic
TCCCGCTCATTTGCTTTATT+AGG 0.289865 4_3:+72397658 None:intergenic
TATGTAAGCCGCAGAGTATT+TGG 0.299031 4_3:+72395330 None:intergenic
TGAAATTGAGAAGGCCATTC+AGG 0.299926 4_3:-72396612 Msa0661180:intron
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 4_3:+72396854 None:intergenic
TGGAAAATTCCTTGATTTGC+TGG 0.311128 4_3:+72396303 None:intergenic
AGGCATCTGTGCGAGTTTAC+AGG 0.319353 4_3:-72395773 Msa0661180:CDS
GGGTTGCAATTCCAAATTCT+TGG 0.322871 4_3:+72397360 None:intergenic
TTAATAAATAAGGATTTGTT+AGG 0.325385 4_3:-72397804 Msa0661180:five_prime_UTR
CGTAACAAAATTAATAAATA+AGG 0.326840 4_3:-72397610 Msa0661180:five_prime_UTR
AAGTAAGTCCAAGGCATTAT+TGG 0.332543 4_3:+72393540 None:intergenic
CAAAAGAGTTACTGTAGTTT+GGG 0.335107 4_3:+72394264 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 4_3:-72396978 Msa0661180:CDS
TGGCGTCAAGCTACACCTTC+AGG 0.350829 4_3:+72393560 None:intergenic
AATTGTTTATAAGGCAGATT+GGG 0.354080 4_3:+72393126 None:intergenic
CACAATACAGTTTCCTCACT+TGG 0.354867 4_3:+72396693 None:intergenic
CATGATGGTATGAAATTGTT+TGG 0.357276 4_3:-72393179 Msa0661180:three_prime_UTR
CAGAAGATTCCTTTACTCAT+AGG 0.359787 4_3:-72395793 Msa0661180:CDS
TCAACTTGGGTCCAGTCGTT+AGG 0.364143 4_3:+72397112 None:intergenic
GGTTGCAATTCCAAATTCTT+GGG 0.368431 4_3:+72397361 None:intergenic
CACACTCCTAAGTTGATTGC+TGG 0.375345 4_3:-72395959 Msa0661180:CDS
CAAGAGGATAGGAATGAAAT+AGG 0.388483 4_3:-72397729 Msa0661180:five_prime_UTR
TAGCAAGGCATTGTATAAAA+TGG 0.394303 4_3:+72394293 None:intergenic
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 4_3:+72397209 None:intergenic
GTACCACCACACGGTGGCTT+TGG 0.402704 4_3:-72393741 Msa0661180:CDS
GAATTGTTTATAAGGCAGAT+TGG 0.409095 4_3:+72393125 None:intergenic
ACAACTTGTTCGTGTGAATC+AGG 0.411639 4_3:-72396364 Msa0661180:CDS
TACAGGTCTTGATGTTGAAA+TGG 0.423398 4_3:-72395756 Msa0661180:CDS
CAAGAAGGAACTCGCAAAGC+TGG 0.423555 4_3:-72397248 Msa0661180:CDS
CAAAGGGAAACCTGCATGCC+TGG 0.426932 4_3:-72395897 Msa0661180:CDS
AGGGTGGAGCTGCTGTCTTT+AGG 0.428133 4_3:-72395928 Msa0661180:CDS
ATGTGATTGAGTGATAAATA+TGG 0.439555 4_3:-72393307 Msa0661180:three_prime_UTR
GGAGTAGAGATTGAACCTTT+TGG 0.442706 4_3:-72394513 Msa0661180:CDS
AACACCTTTAGGGGTTCAAA+CGG 0.444877 4_3:+72395524 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 4_3:+72396950 None:intergenic
CTTGATTTGCTGGTGTTCGC+AGG 0.452358 4_3:+72396313 None:intergenic
GCCCTCCCACGGATTAGAAC+CGG 0.456675 4_3:+72397061 None:intergenic
TGGAGCTGCTGTCTTTAGGC+TGG 0.464922 4_3:-72395924 Msa0661180:CDS
GATTAAGAAACATTATTATG+AGG 0.466183 4_3:-72395732 Msa0661180:intron
TTAGGTGAGGAGATAATATC+AGG 0.470682 4_3:-72394056 Msa0661180:intron
TATTAAAGGTGCCTCACAAC+AGG 0.473545 4_3:-72396852 Msa0661180:intron
GAGTCTATTGTCGATGTTGA+AGG 0.473757 4_3:-72396899 Msa0661180:CDS
TTACAGTTCCAACTTGAGAC+TGG 0.475421 4_3:+72396277 None:intergenic
AATGCCATCTTCTTCCCAAC+TGG 0.476125 4_3:+72397025 None:intergenic
TTAAGATCTTTAGGAGCTGA+TGG 0.477807 4_3:-72393220 Msa0661180:three_prime_UTR
CAACTTGGGTCCAGTCGTTA+GGG 0.479086 4_3:+72397113 None:intergenic
CTTTGCGAGTTCCTTCTTGG+AGG 0.479823 4_3:+72397252 None:intergenic
AAAATAATTGATGATGTTGA+AGG 0.484253 4_3:-72397523 Msa0661180:five_prime_UTR
TGGGGACATCAATGAGCCTA+TGG 0.485195 4_3:+72397380 None:intergenic
TGAGATTCTGAAGTTGACAT+TGG 0.488423 4_3:+72397313 None:intergenic
CGGTGGCTTTGGAGTAGGCT+TGG 0.490259 4_3:-72393730 Msa0661180:CDS
GCAGCATCCTCGATATTAAA+CGG 0.494569 4_3:+72396647 None:intergenic
TCACCACACCCACTTTGAAA+AGG 0.495870 4_3:-72393355 Msa0661180:three_prime_UTR
AATCGTTGAGAGCCTCAACT+TGG 0.498869 4_3:+72397098 None:intergenic
TGGTTTCACCGTACAGTGCT+TGG 0.499781 4_3:-72396984 Msa0661180:CDS
TTTGTTTCTGATGACAGTGT+CGG 0.500363 4_3:+72397286 None:intergenic
AAAATGGTCTTACAGCCAAC+GGG 0.502027 4_3:+72394309 None:intergenic
ACATTGGAGGTTTCCGGAGA+AGG 0.504078 4_3:+72397329 None:intergenic
GTCTTACAGCCAACGGGTAC+CGG 0.506627 4_3:+72394315 None:intergenic
TCAGTATTCAAGTCACCAAA+AGG 0.506705 4_3:+72394498 None:intergenic
CTAGATCCAGCAATCAACTT+AGG 0.510006 4_3:+72395953 None:intergenic
GATTCTGAAGTTGACATTGG+AGG 0.510514 4_3:+72397316 None:intergenic
TTTCACCGTCAACTTGGAGC+TGG 0.511610 4_3:-72393470 Msa0661180:three_prime_UTR
GGTGACTGAGCCAGGCATGC+AGG 0.511713 4_3:+72395887 None:intergenic
GCACCTTTAATAGGAGCGGC+TGG 0.516328 4_3:+72396863 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 4_3:-72397039 Msa0661180:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 4_3:-72397040 Msa0661180:CDS
AACCCTAGCAGTACCTTCTC+CGG 0.519240 4_3:-72397342 Msa0661180:five_prime_UTR
TTCCACATCCAGTCTCAAGT+TGG 0.521976 4_3:-72396285 Msa0661180:CDS
TAACACCAGCTCCAAGTTGA+CGG 0.522048 4_3:+72393465 None:intergenic
ACACCTTTAGGGGTTCAAAC+GGG 0.524064 4_3:+72395525 None:intergenic
CAGCCAACGGGTACCGGTGA+AGG 0.524085 4_3:+72394321 None:intergenic
CTGCGGCTTACATATGAAGA+AGG 0.526092 4_3:-72395321 Msa0661180:CDS
CATGCAGTTCTATATGAAGC+GGG 0.529598 4_3:+72393389 None:intergenic
AATGAATATATATACCTGAA+TGG 0.529761 4_3:+72396598 None:intergenic
GAAACTGTATTGTGTGAGTA+AGG 0.532678 4_3:-72396684 Msa0661180:CDS
AAACAAATTAACACCTTTAG+GGG 0.533347 4_3:+72395515 None:intergenic
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 4_3:+72397050 None:intergenic
CTGCGAACACCAGCAAATCA+AGG 0.537117 4_3:-72396312 Msa0661180:CDS
GAAGTTGAGGTGACTGAGCC+AGG 0.538658 4_3:+72395879 None:intergenic
TCTTTAGGCTGGACTACAAA+GGG 0.538957 4_3:-72395913 Msa0661180:CDS
AGAAAGGAAACTAGGCCAGC+TGG 0.539715 4_3:-72394472 Msa0661180:CDS
TACTCTGCCGTTTAATATCG+AGG 0.540763 4_3:-72396654 Msa0661180:CDS
CGTTAGGGTGCTCAATGAGC+GGG 0.542755 4_3:+72397128 None:intergenic
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 4_3:+72397198 None:intergenic
TCGATATTAAACGGCAGAGT+AGG 0.544830 4_3:+72396656 None:intergenic
CGGCGGCAACTTCTCGGCGG+CGG 0.544898 4_3:+72397215 None:intergenic
ACCTAATAAAGCAAATGAGC+GGG 0.545231 4_3:-72397659 Msa0661180:five_prime_UTR
CCACACGGTGGCTTTGGAGT+AGG 0.547341 4_3:-72393735 Msa0661180:CDS
AACAAGCCGGTTCTAATCCG+TGG 0.547533 4_3:-72397067 Msa0661180:CDS
TTTGAACACAAAATGTAAGA+AGG 0.547679 4_3:-72395573 Msa0661180:CDS
GCTTGACGCCAATAATGCCT+TGG 0.549853 4_3:-72393548 Msa0661180:three_prime_UTR
TAAAATGGTCTTACAGCCAA+CGG 0.552316 4_3:+72394308 None:intergenic
GACATTTGCTTGTGAAGTTG+AGG 0.558674 4_3:+72395866 None:intergenic
GCACAGATGCCTATGAGTAA+AGG 0.560403 4_3:+72395784 None:intergenic
TTCCAACTTGAGACTGGATG+TGG 0.562506 4_3:+72396283 None:intergenic
TTTCCGGAGAAGGTACTGCT+AGG 0.564608 4_3:+72397339 None:intergenic
AAATGCTAATAACATCATCA+TGG 0.570368 4_3:+72393627 None:intergenic
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 4_3:+72397195 None:intergenic
CAGAGTTCTATATCCTTCAC+CGG 0.573477 4_3:-72394334 Msa0661180:CDS
ATTAAACGGCAGAGTAGGAA+TGG 0.575600 4_3:+72396661 None:intergenic
TAGTTTGGGTTGTCATAGCA+AGG 0.575643 4_3:+72394278 None:intergenic
GAAGAACGTGCACAAGCTTG+CGG 0.577219 4_3:-72394002 Msa0661180:CDS
CACATTCAACTGAAGCCTGA+AGG 0.578547 4_3:-72393575 Msa0661180:three_prime_UTR
GTTGCAATTCCAAATTCTTG+GGG 0.580607 4_3:+72397362 None:intergenic
TCGACCAGTTGGGAAGAAGA+TGG 0.581394 4_3:-72397029 Msa0661180:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 4_3:+72396916 None:intergenic
TGCACAAGCTTGCGGCATTG+AGG 0.583418 4_3:-72393994 Msa0661180:CDS
ACTGAAGCAGAAAGGAAACT+AGG 0.584857 4_3:-72394480 Msa0661180:CDS
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 4_3:+72397192 None:intergenic
GTCTTTAGGCTGGACTACAA+AGG 0.586503 4_3:-72395914 Msa0661180:CDS
AAACCATAATTGACAGCAAG+GGG 0.592667 4_3:+72397154 None:intergenic
TTCCGGAGAAGGTACTGCTA+GGG 0.593081 4_3:+72397340 None:intergenic
ACTTGAATACTGAAGCAGAA+AGG 0.595013 4_3:-72394488 Msa0661180:CDS
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 4_3:-72396948 Msa0661180:CDS
GTACCCGTTTGAACCCCTAA+AGG 0.597654 4_3:-72395528 Msa0661180:intron
ACATCCCCTATAAAATCCAT+AGG 0.602208 4_3:-72397396 Msa0661180:five_prime_UTR
AGAGAGAGTCGATGTAGCAG+AGG 0.603238 4_3:+72397189 None:intergenic
ATCGTTGAGAGCCTCAACTT+GGG 0.605848 4_3:+72397099 None:intergenic
ATCAAAACCAACCTGTTGTG+AGG 0.608593 4_3:+72396841 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 4_3:+72396859 None:intergenic
TATCCTTCACCGGTACCCGT+TGG 0.609544 4_3:-72394324 Msa0661180:CDS
GCCGGTTCTAATCCGTGGGA+GGG 0.610769 4_3:-72397062 Msa0661180:CDS
TCATTGAGCACCCTAACGAC+TGG 0.611517 4_3:-72397123 Msa0661180:CDS
CAGCAATCAACTTAGGAGTG+TGG 0.611888 4_3:+72395960 None:intergenic
GCGGCAAATTTCACCATCTG+CGG 0.614321 4_3:+72396935 None:intergenic
ATTGCTGGATCTAGTGAGGG+TGG 0.614640 4_3:-72395944 Msa0661180:CDS
ACAAGCCGGTTCTAATCCGT+GGG 0.615482 4_3:-72397066 Msa0661180:CDS
TATTGTCGATGTTGAAGGTG+TGG 0.616511 4_3:-72396894 Msa0661180:CDS
TCAGGCTTCAGTTGAATGTG+AGG 0.617159 4_3:+72393578 None:intergenic
ATCATGGTGCAATCCTGAGT+GGG 0.620490 4_3:+72393643 None:intergenic
GCATGCAGTTCTATATGAAG+CGG 0.621106 4_3:+72393388 None:intergenic
AATAGACTCACGGCTGAGAG+CGG 0.623488 4_3:+72396913 None:intergenic
AGCCGGTTCTAATCCGTGGG+AGG 0.623958 4_3:-72397063 Msa0661180:CDS
AAGTGAAGTTGAAATTGAGA+AGG 0.624126 4_3:-72396621 Msa0661180:CDS
TGTTTGGAAAAGTAAGTCCA+AGG 0.629031 4_3:+72393531 None:intergenic
TAAGAAGGATCTCGAAGCTG+TGG 0.629352 4_3:-72395558 Msa0661180:CDS
GTTGATTGCTGGATCTAGTG+AGG 0.632210 4_3:-72395948 Msa0661180:CDS
CAACATCGACAATAGACTCA+CGG 0.632667 4_3:+72396903 None:intergenic
AACCTAATAAAGCAAATGAG+CGG 0.635132 4_3:-72397660 Msa0661180:five_prime_UTR
CGTGTAGTAATGCTCTTCTG+TGG 0.635161 4_3:-72393705 Msa0661180:CDS
TGCCTGAACCAAGCACTGTA+CGG 0.635520 4_3:+72396976 None:intergenic
TAACGACTGGACCCAAGTTG+AGG 0.637776 4_3:-72397110 Msa0661180:CDS
TCGTTAGGGTGCTCAATGAG+CGG 0.641022 4_3:+72397127 None:intergenic
AGAAGGTATTCAGATGCTCA+AGG 0.641602 4_3:-72395304 Msa0661180:intron
ATTGTTTATAAGGCAGATTG+GGG 0.642473 4_3:+72393127 None:intergenic
TTGATTGCTGGATCTAGTGA+GGG 0.644845 4_3:-72395947 Msa0661180:CDS
ACTCCAAAGCCACCGTGTGG+TGG 0.646949 4_3:+72393738 None:intergenic
ACACTATTAAAATAGTGCTG+TGG 0.647523 4_3:-72393511 Msa0661180:three_prime_UTR
CATCATGGTGCAATCCTGAG+TGG 0.650761 4_3:+72393642 None:intergenic
AGATATGGTGTACCACCACA+CGG 0.671410 4_3:-72393750 Msa0661180:CDS
AAAACCATAATTGACAGCAA+GGG 0.671638 4_3:+72397153 None:intergenic
TATAGGTTGAAATCCAAGTG+AGG 0.674003 4_3:-72396706 Msa0661180:intron
GCAATCCTGAGTGGGTCACG+TGG 0.678111 4_3:+72393651 None:intergenic
CGATTCACTAGAGAACAAGC+CGG 0.682693 4_3:-72397080 Msa0661180:CDS
TGGCGGCGGCAACTTCTCGG+CGG 0.684255 4_3:+72397212 None:intergenic
ATGCAGTTCTATATGAAGCG+GGG 0.701942 4_3:+72393390 None:intergenic
CCTACTCCAAAGCCACCGTG+TGG 0.729566 4_3:+72393735 None:intergenic
AACCATAATTGACAGCAAGG+GGG 0.738850 4_3:+72397155 None:intergenic
AGTATCTTCCAAATACTCTG+CGG 0.740430 4_3:-72395338 Msa0661180:CDS
TATGGTGTACCACCACACGG+TGG 0.820152 4_3:-72393747 Msa0661180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTACAACAATAAA+AGG + chr4_3:72393409-72393428 None:intergenic 10.0%
!! TCTTAAAAAATAATATTATG+TGG - chr4_3:72393523-72393542 Msa0661180:three_prime_UTR 10.0%
!! CTTAAAAAATAATATTATGT+GGG - chr4_3:72393524-72393543 Msa0661180:three_prime_UTR 10.0%
!!! TTAATAAATAAGGATTTGTT+AGG - chr4_3:72393139-72393158 Msa0661180:three_prime_UTR 15.0%
!! AAATATTTGCTTCAAAAAAA+AGG - chr4_3:72393191-72393210 Msa0661180:three_prime_UTR 15.0%
!! CGTAACAAAATTAATAAATA+AGG - chr4_3:72393333-72393352 Msa0661180:three_prime_UTR 15.0%
!! GAAAAAAAGCTTAAAAATAA+GGG + chr4_3:72393453-72393472 None:intergenic 15.0%
!! TGAAAAAAAGCTTAAAAATA+AGG + chr4_3:72393454-72393473 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG - chr4_3:72394194-72394213 Msa0661180:intron 15.0%
!! AGAATAATATTAGAGAAAAT+AGG + chr4_3:72394694-72394713 None:intergenic 15.0%
!! TGTGTAATAATACAATATAA+TGG - chr4_3:72394801-72394820 Msa0661180:intron 15.0%
!!! ATAATTTTAAACTTTACTAC+AGG + chr4_3:72395878-72395897 None:intergenic 15.0%
!! ATTATATAAATGTCATTGAA+AGG - chr4_3:72395923-72395942 Msa0661180:CDS 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG + chr4_3:72396146-72396165 None:intergenic 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG - chr4_3:72396146-72396165 Msa0661180:intron 15.0%
!! TAACTATGATATATATAAGA+TGG - chr4_3:72396335-72396354 Msa0661180:CDS 15.0%
!! TCTTAGATAAAAATTAGAAA+GGG + chr4_3:72397663-72397682 None:intergenic 15.0%
!! TTCTTAGATAAAAATTAGAA+AGG + chr4_3:72397664-72397683 None:intergenic 15.0%
!!! CAAATATTTTCTACACTTTT+AGG + chr4_3:72393180-72393199 None:intergenic 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG - chr4_3:72393247-72393266 Msa0661180:three_prime_UTR 20.0%
!!! AAAATAATTGATGATGTTGA+AGG - chr4_3:72393420-72393439 Msa0661180:three_prime_UTR 20.0%
!! AATGAATATATATACCTGAA+TGG + chr4_3:72394348-72394367 None:intergenic 20.0%
!! TCAATTACAACATTTCTAAT+CGG + chr4_3:72394372-72394391 None:intergenic 20.0%
!!! TGTTGTTTTGTTTAATATAC+CGG - chr4_3:72394498-72394517 Msa0661180:CDS 20.0%
!! TATATTGTATTATTACACAG+AGG + chr4_3:72394800-72394819 None:intergenic 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG + chr4_3:72394892-72394911 None:intergenic 20.0%
!! GATTAAGAAACATTATTATG+AGG - chr4_3:72395211-72395230 Msa0661180:intron 20.0%
!!! TCAATTTATTTGTTTTGTAG+TGG - chr4_3:72395489-72395508 Msa0661180:intron 20.0%
!!! CAATTTATTTGTTTTGTAGT+GGG - chr4_3:72395490-72395509 Msa0661180:intron 20.0%
!!! TCAATTTTACAAAATAGACA+GGG + chr4_3:72395766-72395785 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG - chr4_3:72395768-72395787 Msa0661180:CDS 20.0%
!! TAAATTGATGAAAATGTACT+TGG - chr4_3:72395964-72395983 Msa0661180:CDS 20.0%
!! AAATTGATGAAAATGTACTT+GGG - chr4_3:72395965-72395984 Msa0661180:CDS 20.0%
!! AATAGTAACAATTATTTGGT+TGG + chr4_3:72396117-72396136 None:intergenic 20.0%
!! AACCAAATAATTGTTACTAT+TGG - chr4_3:72396116-72396135 Msa0661180:intron 20.0%
!! ACCAAATAATTGTTACTATT+GGG - chr4_3:72396117-72396136 Msa0661180:intron 20.0%
!! TGTAATTCTATTTATAGGTA+TGG - chr4_3:72396584-72396603 Msa0661180:intron 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG - chr4_3:72397127-72397146 Msa0661180:CDS 20.0%
!! AATACTGAATAGACAAAAAA+TGG + chr4_3:72397615-72397634 None:intergenic 20.0%
!! CTTAGATAAAAATTAGAAAG+GGG + chr4_3:72397662-72397681 None:intergenic 20.0%
!!! GAATACTTTTTAAGATCTTT+AGG - chr4_3:72397714-72397733 Msa0661180:five_prime_UTR 20.0%
! ATCAGAAACAAAAAGCAAAA+AGG - chr4_3:72393668-72393687 Msa0661180:CDS 25.0%
!!! TTGATTATAATGGTGTTATG+TGG - chr4_3:72394204-72394223 Msa0661180:intron 25.0%
!! AACTTAAGAAATGCATTTTG+CGG - chr4_3:72394899-72394918 Msa0661180:intron 25.0%
! ACATTATTATGAGGTACATT+TGG - chr4_3:72395220-72395239 Msa0661180:intron 25.0%
!!! ACTGATACTTTTCTGTTTTT+TGG - chr4_3:72395300-72395319 Msa0661180:intron 25.0%
! TTTGAACACAAAATGTAAGA+AGG - chr4_3:72395370-72395389 Msa0661180:intron 25.0%
! AAACAAATTAACACCTTTAG+GGG + chr4_3:72395431-72395450 None:intergenic 25.0%
! CAAACAAATTAACACCTTTA+GGG + chr4_3:72395432-72395451 None:intergenic 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG - chr4_3:72395431-72395450 Msa0661180:intron 25.0%
! GATAAACAAACAAATGTGAT+AGG - chr4_3:72395703-72395722 Msa0661180:intron 25.0%
!! CTCAATTTTACAAAATAGAC+AGG + chr4_3:72395767-72395786 None:intergenic 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG - chr4_3:72395767-72395786 Msa0661180:CDS 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG - chr4_3:72395769-72395788 Msa0661180:CDS 25.0%
! TATAAGATTAAACTGTACAC+AGG + chr4_3:72395823-72395842 None:intergenic 25.0%
! TTTAAACTTTACTACAGGAT+TGG + chr4_3:72395873-72395892 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG + chr4_3:72396029-72396048 None:intergenic 25.0%
! TTTAGTCATTTCATTGATGA+TGG - chr4_3:72396044-72396063 Msa0661180:intron 25.0%
!! TGGAATTTTCAAAAATTGGA+GGG + chr4_3:72396097-72396116 None:intergenic 25.0%
!! TTGGAATTTTCAAAAATTGG+AGG + chr4_3:72396098-72396117 None:intergenic 25.0%
!! TGGTTGGAATTTTCAAAAAT+TGG + chr4_3:72396101-72396120 None:intergenic 25.0%
! CCAAATAATTGTTACTATTG+GGG - chr4_3:72396118-72396137 Msa0661180:intron 25.0%
! AGGACATATAGTTATTTGAT+TGG - chr4_3:72396166-72396185 Msa0661180:intron 25.0%
!! GTTATAAAAGATTTGAGACA+GGG + chr4_3:72396513-72396532 None:intergenic 25.0%
!! AGTTATAAAAGATTTGAGAC+AGG + chr4_3:72396514-72396533 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG - chr4_3:72396579-72396598 Msa0661180:intron 25.0%
!! TATGGAAGTACAAACAAATT+TGG + chr4_3:72396812-72396831 None:intergenic 25.0%
! GTTCAATGTCTTTGTTAATA+CGG - chr4_3:72397077-72397096 Msa0661180:CDS 25.0%
! TTCAATGTCTTTGTTAATAC+GGG - chr4_3:72397078-72397097 Msa0661180:CDS 25.0%
!! CTCTGGTTATAATGATTTTA+TGG - chr4_3:72397126-72397145 Msa0661180:CDS 25.0%
!! CTGGTTATAATGATTTTATG+GGG - chr4_3:72397128-72397147 Msa0661180:CDS 25.0%
!!! TGATCAATCATTTAGTTTTC+TGG + chr4_3:72397168-72397187 None:intergenic 25.0%
! TGATTGATCATTTACAGATA+TGG - chr4_3:72397178-72397197 Msa0661180:CDS 25.0%
! AAATGCTAATAACATCATCA+TGG + chr4_3:72397319-72397338 None:intergenic 25.0%
!!! AGCACTATTTTAATAGTGTT+TGG + chr4_3:72397431-72397450 None:intergenic 25.0%
! ATGTGATTGAGTGATAAATA+TGG - chr4_3:72397636-72397655 Msa0661180:five_prime_UTR 25.0%
!! GTTTTTACTTATGTACATGA+TGG - chr4_3:72397749-72397768 Msa0661180:five_prime_UTR 25.0%
AACCTAATAAAGCAAATGAG+CGG - chr4_3:72393283-72393302 Msa0661180:three_prime_UTR 30.0%
! ATGAGCCTATGGATTTTATA+GGG + chr4_3:72393555-72393574 None:intergenic 30.0%
! AATGAGCCTATGGATTTTAT+AGG + chr4_3:72393556-72393575 None:intergenic 30.0%
AAAACCATAATTGACAGCAA+GGG + chr4_3:72393793-72393812 None:intergenic 30.0%
AAAAACCATAATTGACAGCA+AGG + chr4_3:72393794-72393813 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr4_3:72393939-72393958 Msa0661180:intron 30.0%
!! GTTTTGATATCCTGTTACTT+AGG - chr4_3:72394117-72394136 Msa0661180:intron 30.0%
AATCACAAAACCTAAGTAAC+AGG + chr4_3:72394130-72394149 None:intergenic 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr4_3:72394172-72394191 Msa0661180:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG - chr4_3:72394220-72394239 Msa0661180:intron 30.0%
AAGTGAAGTTGAAATTGAGA+AGG - chr4_3:72394322-72394341 Msa0661180:CDS 30.0%
ACACACATCTTTAATCAGAA+AGG + chr4_3:72394474-72394493 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG - chr4_3:72394543-72394562 Msa0661180:intron 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG + chr4_3:72394888-72394907 None:intergenic 30.0%
CACAAGCAAATGTCAATATT+TGG - chr4_3:72395086-72395105 Msa0661180:intron 30.0%
!!! ATACTTTTCTGTTTTTTGGC+AGG - chr4_3:72395304-72395323 Msa0661180:intron 30.0%
CCAAACAAATTAACACCTTT+AGG + chr4_3:72395433-72395452 None:intergenic 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG - chr4_3:72395430-72395449 Msa0661180:intron 30.0%
!! TTTCATTGATGATGGTAGTT+TGG - chr4_3:72396052-72396071 Msa0661180:intron 30.0%
!! TTCATTGATGATGGTAGTTT+GGG - chr4_3:72396053-72396072 Msa0661180:intron 30.0%
CCCCAATAGTAACAATTATT+TGG + chr4_3:72396121-72396140 None:intergenic 30.0%
CAAGTTAGTGACACTTATTT+AGG - chr4_3:72396193-72396212 Msa0661180:intron 30.0%
!! TTTCCTCTTGTAGTTAGTTT+TGG - chr4_3:72396250-72396269 Msa0661180:intron 30.0%
!!! TTCCTCTTGTAGTTAGTTTT+GGG - chr4_3:72396251-72396270 Msa0661180:intron 30.0%
TTTACATCAAGACTCAGAAA+AGG - chr4_3:72396299-72396318 Msa0661180:CDS 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG + chr4_3:72396489-72396508 None:intergenic 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG + chr4_3:72396653-72396672 None:intergenic 30.0%
CAAAAGAGTTACTGTAGTTT+GGG + chr4_3:72396682-72396701 None:intergenic 30.0%
TCAAAAGAGTTACTGTAGTT+TGG + chr4_3:72396683-72396702 None:intergenic 30.0%
! TATTTTGTCATGCAATGCTT+TGG - chr4_3:72396736-72396755 Msa0661180:intron 30.0%
AATGCTTTGGTATGACAATT+TGG - chr4_3:72396749-72396768 Msa0661180:intron 30.0%
AAGAATCAATGTAAGCAGAT+AGG + chr4_3:72396982-72397001 None:intergenic 30.0%
ACACTATTAAAATAGTGCTG+TGG - chr4_3:72397432-72397451 Msa0661180:five_prime_UTR 30.0%
! AAAATGGTCCTTTTCAAAGT+GGG + chr4_3:72397599-72397618 None:intergenic 30.0%
! AAAAATGGTCCTTTTCAAAG+TGG + chr4_3:72397600-72397619 None:intergenic 30.0%
CATGATGGTATGAAATTGTT+TGG - chr4_3:72397764-72397783 Msa0661180:five_prime_UTR 30.0%
TGCTTCAAAAAAAAGGCAAG+AGG - chr4_3:72393198-72393217 Msa0661180:three_prime_UTR 35.0%
CAAAAAAAAGGCAAGAGGAT+AGG - chr4_3:72393203-72393222 Msa0661180:three_prime_UTR 35.0%
CAAGAGGATAGGAATGAAAT+AGG - chr4_3:72393214-72393233 Msa0661180:three_prime_UTR 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - chr4_3:72393236-72393255 Msa0661180:three_prime_UTR 35.0%
ACCTAATAAAGCAAATGAGC+GGG - chr4_3:72393284-72393303 Msa0661180:three_prime_UTR 35.0%
CAAATGAGCGGGAAAAAATT+AGG - chr4_3:72393295-72393314 Msa0661180:three_prime_UTR 35.0%
ACATCCCCTATAAAATCCAT+AGG - chr4_3:72393547-72393566 Msa0661180:three_prime_UTR 35.0%
! TGAGCCTATGGATTTTATAG+GGG + chr4_3:72393554-72393573 None:intergenic 35.0%
GTTGCAATTCCAAATTCTTG+GGG + chr4_3:72393584-72393603 None:intergenic 35.0%
GGTTGCAATTCCAAATTCTT+GGG + chr4_3:72393585-72393604 None:intergenic 35.0%
!! TGAGATTCTGAAGTTGACAT+TGG + chr4_3:72393633-72393652 None:intergenic 35.0%
!! TTTGTTTCTGATGACAGTGT+CGG + chr4_3:72393660-72393679 None:intergenic 35.0%
AAACCATAATTGACAGCAAG+GGG + chr4_3:72393792-72393811 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG - chr4_3:72394237-72394256 Msa0661180:intron 35.0%
GAAACTGTATTGTGTGAGTA+AGG - chr4_3:72394259-72394278 Msa0661180:CDS 35.0%
CACCATCAACATTCATGTAA+GGG + chr4_3:72394533-72394552 None:intergenic 35.0%
TCACCATCAACATTCATGTA+AGG + chr4_3:72394534-72394553 None:intergenic 35.0%
!! TGGAAAATTCCTTGATTTGC+TGG + chr4_3:72394643-72394662 None:intergenic 35.0%
TTATTACACAGAGGCTGTTT+AGG + chr4_3:72394791-72394810 None:intergenic 35.0%
CAGAAGATTCCTTTACTCAT+AGG - chr4_3:72395150-72395169 Msa0661180:intron 35.0%
TACAGGTCTTGATGTTGAAA+TGG - chr4_3:72395187-72395206 Msa0661180:intron 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG - chr4_3:72395263-72395282 Msa0661180:intron 35.0%
!!! TTCTGTTTTTTGGCAGGTTA+TGG - chr4_3:72395310-72395329 Msa0661180:CDS 35.0%
GAAGATACTGCACATTCATA+GGG + chr4_3:72395594-72395613 None:intergenic 35.0%
AGTATCTTCCAAATACTCTG+CGG - chr4_3:72395605-72395624 Msa0661180:CDS 35.0%
CAAATGTGATAGGATGATGA+TGG - chr4_3:72395713-72395732 Msa0661180:intron 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG - chr4_3:72395772-72395791 Msa0661180:CDS 35.0%
!! TCATTGATGATGGTAGTTTG+GGG - chr4_3:72396054-72396073 Msa0661180:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG - chr4_3:72396212-72396231 Msa0661180:intron 35.0%
GGAATTCCTCAACAATAGTT+AGG + chr4_3:72396221-72396240 None:intergenic 35.0%
AACTATTGTTGAGGAATTCC+TGG - chr4_3:72396221-72396240 Msa0661180:intron 35.0%
ACTATTGTTGAGGAATTCCT+GGG - chr4_3:72396222-72396241 Msa0661180:intron 35.0%
!!! TGTAGTTAGTTTTGGGAGTT+TGG - chr4_3:72396258-72396277 Msa0661180:intron 35.0%
! GAGTAATGATTTTGCTTTGC+AGG - chr4_3:72396402-72396421 Msa0661180:intron 35.0%
TCAGTATTCAAGTCACCAAA+AGG + chr4_3:72396448-72396467 None:intergenic 35.0%
ACTTGAATACTGAAGCAGAA+AGG - chr4_3:72396455-72396474 Msa0661180:intron 35.0%
! TAAAATGGTCTTACAGCCAA+CGG + chr4_3:72396638-72396657 None:intergenic 35.0%
! TCTTTTGATGTCTTCATTCG+AGG - chr4_3:72396695-72396714 Msa0661180:CDS 35.0%
! GCACGCAATTAATCATGTTT+TGG - chr4_3:72396773-72396792 Msa0661180:intron 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG - chr4_3:72396826-72396845 Msa0661180:intron 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG - chr4_3:72396827-72396846 Msa0661180:intron 35.0%
TTAGGTGAGGAGATAATATC+AGG - chr4_3:72396887-72396906 Msa0661180:CDS 35.0%
! TATCCACATGCCTGAATTTT+TGG - chr4_3:72396919-72396938 Msa0661180:CDS 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr4_3:72396984-72397003 Msa0661180:CDS 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr4_3:72396984-72397003 Msa0661180:CDS 35.0%
ACAAAGACATTGAACACGAT+AGG + chr4_3:72397072-72397091 None:intergenic 35.0%
CTTTGTTAATACGGGTGTTT+AGG - chr4_3:72397086-72397105 Msa0661180:CDS 35.0%
! AAGTAAGTCCAAGGCATTAT+TGG + chr4_3:72397406-72397425 None:intergenic 35.0%
TGTTTGGAAAAGTAAGTCCA+AGG + chr4_3:72397415-72397434 None:intergenic 35.0%
! TTCTATTTTCACCGTCAACT+TGG - chr4_3:72397467-72397486 Msa0661180:five_prime_UTR 35.0%
! TTAAGATCTTTAGGAGCTGA+TGG - chr4_3:72397723-72397742 Msa0661180:five_prime_UTR 35.0%
! TCCCGCTCATTTGCTTTATT+AGG + chr4_3:72393288-72393307 None:intergenic 40.0%
CATTGATGTCCCCAAGAATT+TGG - chr4_3:72393572-72393591 Msa0661180:three_prime_UTR 40.0%
GGGTTGCAATTCCAAATTCT+TGG + chr4_3:72393586-72393605 None:intergenic 40.0%
AAGTTGACATTGGAGGTTTC+CGG + chr4_3:72393623-72393642 None:intergenic 40.0%
!! GATTCTGAAGTTGACATTGG+AGG + chr4_3:72393630-72393649 None:intergenic 40.0%
AACCATAATTGACAGCAAGG+GGG + chr4_3:72393791-72393810 None:intergenic 40.0%
CAACATCGACAATAGACTCA+CGG + chr4_3:72394043-72394062 None:intergenic 40.0%
GAGTCTATTGTCGATGTTGA+AGG - chr4_3:72394044-72394063 Msa0661180:CDS 40.0%
TATTGTCGATGTTGAAGGTG+TGG - chr4_3:72394049-72394068 Msa0661180:CDS 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr4_3:72394092-72394111 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr4_3:72394091-72394110 Msa0661180:intron 40.0%
ATCAAAACCAACCTGTTGTG+AGG + chr4_3:72394105-72394124 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG + chr4_3:72394253-72394272 None:intergenic 40.0%
ATTAAACGGCAGAGTAGGAA+TGG + chr4_3:72394285-72394304 None:intergenic 40.0%
TCGATATTAAACGGCAGAGT+AGG + chr4_3:72394290-72394309 None:intergenic 40.0%
! TACTCTGCCGTTTAATATCG+AGG - chr4_3:72394289-72394308 Msa0661180:CDS 40.0%
GCAGCATCCTCGATATTAAA+CGG + chr4_3:72394299-72394318 None:intergenic 40.0%
TGAAATTGAGAAGGCCATTC+AGG - chr4_3:72394331-72394350 Msa0661180:CDS 40.0%
CTACAATCAAGATGAGAGTG+TGG - chr4_3:72394406-72394425 Msa0661180:intron 40.0%
CTCCCTTACATGAATGTTGA+TGG - chr4_3:72394528-72394547 Msa0661180:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG - chr4_3:72394549-72394568 Msa0661180:intron 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG - chr4_3:72394553-72394572 Msa0661180:intron 40.0%
! ACAACTTGTTCGTGTGAATC+AGG - chr4_3:72394579-72394598 Msa0661180:intron 40.0%
TTACAGTTCCAACTTGAGAC+TGG + chr4_3:72394669-72394688 None:intergenic 40.0%
CACATGACAACAACTTACCA+AGG + chr4_3:72394759-72394778 None:intergenic 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG - chr4_3:72394854-72394873 Msa0661180:intron 40.0%
! ATGCATTTTGCGGTGTGATA+CGG - chr4_3:72394909-72394928 Msa0661180:intron 40.0%
CTAGATCCAGCAATCAACTT+AGG + chr4_3:72394993-72395012 None:intergenic 40.0%
TTGATTGCTGGATCTAGTGA+GGG - chr4_3:72394996-72395015 Msa0661180:intron 40.0%
TCTTTAGGCTGGACTACAAA+GGG - chr4_3:72395030-72395049 Msa0661180:intron 40.0%
GACATTTGCTTGTGAAGTTG+AGG + chr4_3:72395080-72395099 None:intergenic 40.0%
!!! TTTCGCCGTGTTTTTGAGAT+TGG - chr4_3:72395113-72395132 Msa0661180:intron 40.0%
CAGCACCAATCTCAAAAACA+CGG + chr4_3:72395121-72395140 None:intergenic 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG - chr4_3:72395262-72395281 Msa0661180:intron 40.0%
! AACACCTTTAGGGGTTCAAA+CGG + chr4_3:72395422-72395441 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG + chr4_3:72395595-72395614 None:intergenic 40.0%
! TATGTAAGCCGCAGAGTATT+TGG + chr4_3:72395616-72395635 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG - chr4_3:72395639-72395658 Msa0661180:intron 40.0%
!! ATGTGATAGGATGATGATGG+CGG - chr4_3:72395716-72395735 Msa0661180:intron 40.0%
GACAGGGATAAAAGACGTAA+AGG + chr4_3:72395750-72395769 None:intergenic 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG - chr4_3:72395792-72395811 Msa0661180:CDS 40.0%
GAAAATGTACTTGGGTAGAC+AGG - chr4_3:72395973-72395992 Msa0661180:CDS 40.0%
CTATTGTTGAGGAATTCCTG+GGG - chr4_3:72396223-72396242 Msa0661180:intron 40.0%
TACAAGAGGAAAAATACCCC+AGG + chr4_3:72396242-72396261 None:intergenic 40.0%
CTCCCAAAACTAACTACAAG+AGG + chr4_3:72396256-72396275 None:intergenic 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG - chr4_3:72396409-72396428 Msa0661180:intron 40.0%
! GGAGTAGAGATTGAACCTTT+TGG - chr4_3:72396430-72396449 Msa0661180:intron 40.0%
ACTGAAGCAGAAAGGAAACT+AGG - chr4_3:72396463-72396482 Msa0661180:intron 40.0%
CAGAGTTCTATATCCTTCAC+CGG - chr4_3:72396609-72396628 Msa0661180:intron 40.0%
! AAAATGGTCTTACAGCCAAC+GGG + chr4_3:72396637-72396656 None:intergenic 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG + chr4_3:72396668-72396687 None:intergenic 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG + chr4_3:72396830-72396849 None:intergenic 40.0%
! CTATGCAATCCTTGTTGCTT+AGG - chr4_3:72396869-72396888 Msa0661180:CDS 40.0%
CTTCCAAAAATTCAGGCATG+TGG + chr4_3:72396925-72396944 None:intergenic 40.0%
GCACGTTCTTCCAAAAATTC+AGG + chr4_3:72396932-72396951 None:intergenic 40.0%
ATGCAGTTCTATATGAAGCG+GGG + chr4_3:72397556-72397575 None:intergenic 40.0%
CATGCAGTTCTATATGAAGC+GGG + chr4_3:72397557-72397576 None:intergenic 40.0%
GCATGCAGTTCTATATGAAG+CGG + chr4_3:72397558-72397577 None:intergenic 40.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr4_3:72393680-72393699 Msa0661180:CDS 45.0%
ATCGTTGAGAGCCTCAACTT+GGG + chr4_3:72393847-72393866 None:intergenic 45.0%
AATCGTTGAGAGCCTCAACT+TGG + chr4_3:72393848-72393867 None:intergenic 45.0%
CGATTCACTAGAGAACAAGC+CGG - chr4_3:72393863-72393882 Msa0661180:intron 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr4_3:72393904-72393923 Msa0661180:intron 45.0%
AATGCCATCTTCTTCCCAAC+TGG + chr4_3:72393921-72393940 None:intergenic 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr4_3:72393996-72394015 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr4_3:72393995-72394014 Msa0661180:CDS 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr4_3:72394077-72394096 Msa0661180:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr4_3:72394087-72394106 None:intergenic 45.0%
CATGTAAGGGAGACAAGTTC+CGG + chr4_3:72394520-72394539 None:intergenic 45.0%
TTCCACATCCAGTCTCAAGT+TGG - chr4_3:72394658-72394677 Msa0661180:intron 45.0%
TTCCAACTTGAGACTGGATG+TGG + chr4_3:72394663-72394682 None:intergenic 45.0%
! AGTTGCTGCTTGTGAAACCT+TGG - chr4_3:72394739-72394758 Msa0661180:intron 45.0%
CAGCAATCAACTTAGGAGTG+TGG + chr4_3:72394986-72395005 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG - chr4_3:72394984-72395003 Msa0661180:intron 45.0%
GTTGATTGCTGGATCTAGTG+AGG - chr4_3:72394995-72395014 Msa0661180:intron 45.0%
GTCTTTAGGCTGGACTACAA+AGG - chr4_3:72395029-72395048 Msa0661180:intron 45.0%
GCACAGATGCCTATGAGTAA+AGG + chr4_3:72395162-72395181 None:intergenic 45.0%
TAAGAAGGATCTCGAAGCTG+TGG - chr4_3:72395385-72395404 Msa0661180:intron 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG + chr4_3:72395421-72395440 None:intergenic 45.0%
CTGCGGCTTACATATGAAGA+AGG - chr4_3:72395622-72395641 Msa0661180:intron 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG - chr4_3:72395791-72395810 Msa0661180:CDS 45.0%
TCATTACTCGCTGCAAGACA+AGG + chr4_3:72396391-72396410 None:intergenic 45.0%
! CAATCCTTGTTGCTTAGGTG+AGG - chr4_3:72396874-72396893 Msa0661180:CDS 45.0%
ATCTCCTCACCTAAGCAACA+AGG + chr4_3:72396881-72396900 None:intergenic 45.0%
ATAACCAGAGCTCAGCAAGA+GGG + chr4_3:72397116-72397135 None:intergenic 45.0%
TATAACCAGAGCTCAGCAAG+AGG + chr4_3:72397117-72397136 None:intergenic 45.0%
AGATATGGTGTACCACCACA+CGG - chr4_3:72397193-72397212 Msa0661180:CDS 45.0%
CGTGTAGTAATGCTCTTCTG+TGG - chr4_3:72397238-72397257 Msa0661180:CDS 45.0%
ATCATGGTGCAATCCTGAGT+GGG + chr4_3:72397303-72397322 None:intergenic 45.0%
TCAGGCTTCAGTTGAATGTG+AGG + chr4_3:72397368-72397387 None:intergenic 45.0%
CACATTCAACTGAAGCCTGA+AGG - chr4_3:72397368-72397387 Msa0661180:five_prime_UTR 45.0%
! TAACACCAGCTCCAAGTTGA+CGG + chr4_3:72397481-72397500 None:intergenic 45.0%
! TCACCACACCCACTTTGAAA+AGG - chr4_3:72397588-72397607 Msa0661180:five_prime_UTR 45.0%
TGGGGACATCAATGAGCCTA+TGG + chr4_3:72393566-72393585 None:intergenic 50.0%
AACCCTAGCAGTACCTTCTC+CGG - chr4_3:72393601-72393620 Msa0661180:three_prime_UTR 50.0%
!! TTCCGGAGAAGGTACTGCTA+GGG + chr4_3:72393606-72393625 None:intergenic 50.0%
!! TTTCCGGAGAAGGTACTGCT+AGG + chr4_3:72393607-72393626 None:intergenic 50.0%
ACATTGGAGGTTTCCGGAGA+AGG + chr4_3:72393617-72393636 None:intergenic 50.0%
CTTTGCGAGTTCCTTCTTGG+AGG + chr4_3:72393694-72393713 None:intergenic 50.0%
CAGCTTTGCGAGTTCCTTCT+TGG + chr4_3:72393697-72393716 None:intergenic 50.0%
CAAGAAGGAACTCGCAAAGC+TGG - chr4_3:72393695-72393714 Msa0661180:CDS 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr4_3:72393757-72393776 None:intergenic 50.0%
! GACCCCCTTGCTGTCAATTA+TGG - chr4_3:72393786-72393805 Msa0661180:intron 50.0%
! TCGTTAGGGTGCTCAATGAG+CGG + chr4_3:72393819-72393838 None:intergenic 50.0%
TCATTGAGCACCCTAACGAC+TGG - chr4_3:72393820-72393839 Msa0661180:intron 50.0%
CAACTTGGGTCCAGTCGTTA+GGG + chr4_3:72393833-72393852 None:intergenic 50.0%
TCAACTTGGGTCCAGTCGTT+AGG + chr4_3:72393834-72393853 None:intergenic 50.0%
TAACGACTGGACCCAAGTTG+AGG - chr4_3:72393833-72393852 Msa0661180:intron 50.0%
! AACAAGCCGGTTCTAATCCG+TGG - chr4_3:72393876-72393895 Msa0661180:intron 50.0%
! ACAAGCCGGTTCTAATCCGT+GGG - chr4_3:72393877-72393896 Msa0661180:intron 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr4_3:72393903-72393922 Msa0661180:intron 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr4_3:72393914-72393933 Msa0661180:intron 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr4_3:72393959-72393978 Msa0661180:intron 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr4_3:72393970-72393989 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr4_3:72394011-72394030 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG + chr4_3:72394033-72394052 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr4_3:72394095-72394114 Msa0661180:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG + chr4_3:72394633-72394652 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG - chr4_3:72394631-72394650 Msa0661180:intron 50.0%
TTTGCGGTGTGATACGGTGT+TGG - chr4_3:72394915-72394934 Msa0661180:intron 50.0%
TTGCGGTGTGATACGGTGTT+GGG - chr4_3:72394916-72394935 Msa0661180:intron 50.0%
ATTGCTGGATCTAGTGAGGG+TGG - chr4_3:72394999-72395018 Msa0661180:intron 50.0%
AGGCATCTGTGCGAGTTTAC+AGG - chr4_3:72395170-72395189 Msa0661180:intron 50.0%
GTACCCGTTTGAACCCCTAA+AGG - chr4_3:72395415-72395434 Msa0661180:intron 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG - chr4_3:72395787-72395806 Msa0661180:CDS 50.0%
AGAAAGGAAACTAGGCCAGC+TGG - chr4_3:72396471-72396490 Msa0661180:intron 50.0%
GAAGAACGTGCACAAGCTTG+CGG - chr4_3:72396941-72396960 Msa0661180:CDS 50.0%
TAACCAGAGCTCAGCAAGAG+GGG + chr4_3:72397115-72397134 None:intergenic 50.0%
! TTTTTCCACGTGACCCACTC+AGG - chr4_3:72397287-72397306 Msa0661180:CDS 50.0%
CATCATGGTGCAATCCTGAG+TGG + chr4_3:72397304-72397323 None:intergenic 50.0%
GCTTGACGCCAATAATGCCT+TGG - chr4_3:72397395-72397414 Msa0661180:five_prime_UTR 50.0%
TTTCACCGTCAACTTGGAGC+TGG - chr4_3:72397473-72397492 Msa0661180:five_prime_UTR 50.0%
! GGTCCTTTTCAAAGTGGGTG+TGG + chr4_3:72397594-72397613 None:intergenic 50.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr4_3:72393751-72393770 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr4_3:72393754-72393773 None:intergenic 55.0%
! CGTTAGGGTGCTCAATGAGC+GGG + chr4_3:72393818-72393837 None:intergenic 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr4_3:72393896-72393915 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr4_3:72393965-72393984 Msa0661180:CDS 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr4_3:72394083-72394102 None:intergenic 55.0%
! GGTGTGATACGGTGTTGGGT+AGG - chr4_3:72394920-72394939 Msa0661180:intron 55.0%
AGGGTGGAGCTGCTGTCTTT+AGG - chr4_3:72395015-72395034 Msa0661180:intron 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG - chr4_3:72395019-72395038 Msa0661180:intron 55.0%
CAAAGGGAAACCTGCATGCC+TGG - chr4_3:72395046-72395065 Msa0661180:intron 55.0%
GAAGTTGAGGTGACTGAGCC+AGG + chr4_3:72395067-72395086 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG - chr4_3:72396619-72396638 Msa0661180:CDS 55.0%
GTCTTACAGCCAACGGGTAC+CGG + chr4_3:72396631-72396650 None:intergenic 55.0%
TGCACAAGCTTGCGGCATTG+AGG - chr4_3:72396949-72396968 Msa0661180:CDS 55.0%
TATGGTGTACCACCACACGG+TGG - chr4_3:72397196-72397215 Msa0661180:CDS 55.0%
TGGCGTCAAGCTACACCTTC+AGG + chr4_3:72397386-72397405 None:intergenic 55.0%
! AGCCGGTTCTAATCCGTGGG+AGG - chr4_3:72393880-72393899 Msa0661180:intron 60.0%
! GCCGGTTCTAATCCGTGGGA+GGG - chr4_3:72393881-72393900 Msa0661180:intron 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr4_3:72393885-72393904 None:intergenic 60.0%
GTACCACCACACGGTGGCTT+TGG - chr4_3:72397202-72397221 Msa0661180:CDS 60.0%
ACTCCAAAGCCACCGTGTGG+TGG + chr4_3:72397208-72397227 None:intergenic 60.0%
CCTACTCCAAAGCCACCGTG+TGG + chr4_3:72397211-72397230 None:intergenic 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG - chr4_3:72397208-72397227 Msa0661180:CDS 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG - chr4_3:72397213-72397232 Msa0661180:CDS 60.0%
GCAATCCTGAGTGGGTCACG+TGG + chr4_3:72397295-72397314 None:intergenic 60.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr4_3:72393737-72393756 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr4_3:72393748-72393767 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG + chr4_3:72394030-72394049 None:intergenic 65.0%
GGTGACTGAGCCAGGCATGC+AGG + chr4_3:72395059-72395078 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG + chr4_3:72396625-72396644 None:intergenic 65.0%
CTGCCCCTCTTGCTGAGCTC+TGG - chr4_3:72397109-72397128 Msa0661180:CDS 65.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr4_3:72393734-72393753 None:intergenic 70.0%
CGGCGGCAACTTCTCGGCGG+CGG + chr4_3:72393731-72393750 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 72393138 72397827 72393138 ID=Msa0661180;Name=Msa0661180
chr4_3 mRNA 72393138 72397827 72393138 ID=Msa0661180-mRNA-1;Parent=Msa0661180;Name=Msa0661180-mRNA-1;_AED=0.30;_eAED=0.30;_QI=495|1|1|1|1|1|10|506|532
chr4_3 exon 72393138 72393770 72393138 ID=Msa0661180-mRNA-1:exon:21758;Parent=Msa0661180-mRNA-1
chr4_3 exon 72393960 72394074 72393960 ID=Msa0661180-mRNA-1:exon:21757;Parent=Msa0661180-mRNA-1
chr4_3 exon 72394249 72394364 72394249 ID=Msa0661180-mRNA-1:exon:21756;Parent=Msa0661180-mRNA-1
chr4_3 exon 72394462 72394541 72394462 ID=Msa0661180-mRNA-1:exon:21755;Parent=Msa0661180-mRNA-1
chr4_3 exon 72395305 72395358 72395305 ID=Msa0661180-mRNA-1:exon:21754;Parent=Msa0661180-mRNA-1
chr4_3 exon 72395529 72395639 72395529 ID=Msa0661180-mRNA-1:exon:21753;Parent=Msa0661180-mRNA-1
chr4_3 exon 72395733 72396023 72395733 ID=Msa0661180-mRNA-1:exon:21752;Parent=Msa0661180-mRNA-1
chr4_3 exon 72396281 72396394 72396281 ID=Msa0661180-mRNA-1:exon:21751;Parent=Msa0661180-mRNA-1
chr4_3 exon 72396613 72396723 72396613 ID=Msa0661180-mRNA-1:exon:21750;Parent=Msa0661180-mRNA-1
chr4_3 exon 72396853 72397827 72396853 ID=Msa0661180-mRNA-1:exon:21749;Parent=Msa0661180-mRNA-1
chr4_3 five_prime_UTR 72397333 72397827 72397333 ID=Msa0661180-mRNA-1:five_prime_utr;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72396853 72397332 72396853 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72396613 72396723 72396613 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72396281 72396394 72396281 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72395733 72396023 72395733 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72395529 72395639 72395529 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72395305 72395358 72395305 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72394462 72394541 72394462 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72394249 72394364 72394249 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72393960 72394074 72393960 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 CDS 72393644 72393770 72393644 ID=Msa0661180-mRNA-1:cds;Parent=Msa0661180-mRNA-1
chr4_3 three_prime_UTR 72393138 72393643 72393138 ID=Msa0661180-mRNA-1:three_prime_utr;Parent=Msa0661180-mRNA-1
Gene Sequence

>Msa0661180

ATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCAGAAACAAAAAGCAAAAAGGCCTCCAAGAAGGAACTCGCAAAGCTGGAAAAGCAACGCCGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTTGAAGATGACCCCCTTGCTGTCAATTATGGTTTTTTCCCGCTCATTGAGCACCCTAACGACTGGACCCAAGTTGAGGCTCTCAACGATTCACTAGAGAACAAGCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCATTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTTGAAGGTGTGGTTTCAATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGAAATCCAAGTGAGGAAACTGTATTGTGTGAGTAAGGCCATTCCTACTCTGCCGTTTAATATCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCCATTCAGGCTGGTGAACAACTTGTTCGTGTGAATCAGGATACACGATTGAATTTTAGAGTACTTGACCTGCGAACACCAGCAAATCAAGGAATTTTCCACATCCAGTCTCAAGTTGGAACTGCGTTCAGACAATTTTTATTAGCTGAAAGCTTTGTTGAAATCCACACTCCTAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTCTTTAGGCTGGACTACAAAGGGAAACCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGTCAATATTTGGTGATTTTCGCCGTGTTTTTGAGATTGGTGCTGTGTATAGAGCAGAAGATTCCTTTACTCATAGGCATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAACATTATTATGAGGTTATGGATGTAGTTGACAAATTGTTTGTTGCTATGTTTGACACTTTGAACACAAAATGTAAGAAGGATCTCGAAGCTGTGGCAAATCAGTACCCGTTTGAACCCCTAAAGTATCTTCCAAATACTCTGCGGCTTACATATGAAGAAGGTATTCAGATGCTCAAGGAAGTTGGAGTAGAGATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAGCTGGTTTTAGAAAAGTATGGAACAGAGTTCTATATCCTTCACCGGTACCCGTTGGCTGTAAGACCATTTTATACAATGCCTTGCTATGACAACCCAAACTACAGTAACTCTTTTGATGTCTTCATTCGAGGTGAGGAGATAATATCAGGAGCTCAGCGTATCCACATGCCTGAATTTTTGGAAGAACGTGCACAAGCTTGCGGCATTGAGGTCAAGACAATATCTGCTTACATTGATTCTTTCAGATATGGTGTACCACCACACGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCTTGAACAACATTCGCAAAACATCACTTTTTCCACGTGACCCACTCAGGATTGCACCATGA
Protein sequence

>Msa0661180

MSTSESQEPTLSSETKSKKASKKELAKLEKQRRRREVAAATSATSTLSVEDDPLAVNYGFFPLIEHPNDWTQVEALNDSLENKPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVEIQVRKLYCVSKAIPTLPFNIEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFHIQSQVGTAFRQFLLAESFVEIHTPKLIAGSSEGGAAVFRLDYKGKPACLAQSPQLHKQMSIFGDFRRVFEIGAVYRAEDSFTHRHLCEFTGLDVEMEIKKHYYEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHMPEFLEERAQACGIEVKTISAYIDSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP*