Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055140 | AAB41813.1 | 100.000 | 374 | 0 | 0 | 1 | 374 | 1 | 374 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055140 | Q43557 | 100.000 | 374 | 0 | 0 | 1 | 374 | 1 | 374 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006870 | Msa0055140 | 0.845775 | 3.291116e-59 | -8.615850e-47 |
| Msa0055140 | Msa0100570 | 0.848745 | 5.038606e-60 | -8.615850e-47 |
| Msa0055140 | Msa0100860 | 0.856699 | 2.697000e-62 | -8.615850e-47 |
| Msa0055140 | Msa1274740 | 0.811470 | 6.890307e-51 | -8.615850e-47 |
| Msa0055140 | Msa1312730 | 0.803926 | 2.760516e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055140 | MtrunA17_Chr1g0149051 | 98.391 | 373 | 6 | 0 | 3 | 375 | 4 | 376 | 0.0 | 756 |
| Msa0055140 | MtrunA17_Chr2g0332541 | 67.027 | 370 | 116 | 2 | 11 | 375 | 1 | 369 | 0.0 | 514 |
| Msa0055140 | MtrunA17_Chr3g0089391 | 56.325 | 332 | 143 | 2 | 36 | 367 | 32 | 361 | 8.40e-133 | 384 |
| Msa0055140 | MtrunA17_Chr4g0019571 | 52.676 | 355 | 164 | 4 | 15 | 367 | 12 | 364 | 3.63e-131 | 380 |
| Msa0055140 | MtrunA17_Chr4g0019581 | 52.113 | 355 | 166 | 3 | 15 | 367 | 81 | 433 | 5.42e-130 | 380 |
| Msa0055140 | MtrunA17_Chr4g0019601 | 52.394 | 355 | 165 | 3 | 15 | 367 | 12 | 364 | 1.59e-129 | 376 |
| Msa0055140 | MtrunA17_Chr2g0286051 | 46.797 | 359 | 185 | 3 | 13 | 369 | 11 | 365 | 1.52e-120 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055140 | AT5G11420.1 | 74.722 | 360 | 90 | 1 | 16 | 375 | 8 | 366 | 0.0 | 574 |
| Msa0055140 | AT5G25460.1 | 74.444 | 360 | 88 | 2 | 19 | 375 | 11 | 369 | 0.0 | 568 |
| Msa0055140 | AT4G32460.2 | 74.510 | 357 | 90 | 1 | 19 | 375 | 10 | 365 | 0.0 | 561 |
| Msa0055140 | AT4G32460.1 | 74.510 | 357 | 90 | 1 | 19 | 375 | 10 | 365 | 0.0 | 561 |
| Msa0055140 | AT4G32460.4 | 76.687 | 326 | 75 | 1 | 50 | 375 | 1 | 325 | 0.0 | 530 |
| Msa0055140 | AT4G32460.3 | 76.687 | 326 | 75 | 1 | 50 | 375 | 1 | 325 | 0.0 | 530 |
| Msa0055140 | AT1G80240.1 | 63.793 | 348 | 125 | 1 | 27 | 374 | 21 | 367 | 2.12e-165 | 467 |
| Msa0055140 | AT3G08030.1 | 55.224 | 335 | 149 | 1 | 33 | 367 | 26 | 359 | 2.02e-132 | 384 |
| Msa0055140 | AT2G41810.1 | 50.543 | 368 | 173 | 3 | 11 | 370 | 1 | 367 | 1.27e-128 | 374 |
| Msa0055140 | AT2G41800.1 | 51.754 | 342 | 164 | 1 | 32 | 373 | 30 | 370 | 2.14e-127 | 371 |
| Msa0055140 | AT3G08030.2 | 55.660 | 318 | 140 | 1 | 50 | 367 | 1 | 317 | 3.29e-126 | 366 |
| Msa0055140 | AT1G29980.1 | 50.000 | 346 | 163 | 3 | 33 | 369 | 38 | 382 | 1.08e-120 | 355 |
| Msa0055140 | AT1G29980.2 | 49.855 | 345 | 163 | 3 | 34 | 369 | 3 | 346 | 2.86e-120 | 353 |
| Msa0055140 | AT2G34510.1 | 48.246 | 342 | 171 | 2 | 33 | 369 | 38 | 378 | 1.73e-116 | 344 |
| Msa0055140 | AT2G34510.2 | 48.630 | 292 | 145 | 1 | 83 | 369 | 1 | 292 | 1.75e-102 | 305 |
| Msa0055140 | AT5G14150.2 | 27.957 | 372 | 227 | 13 | 13 | 367 | 8 | 355 | 1.81e-36 | 136 |
| Msa0055140 | AT5G14150.1 | 27.957 | 372 | 227 | 13 | 13 | 367 | 8 | 355 | 1.81e-36 | 136 |
Find 100 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTCCGGGTTTGCCTATC+TGG | 0.191893 | 1_2:-9994240 | Msa0055140:three_prime_UTR |
| CCTTTACCTTTGGATGAATA+AGG | 0.215858 | 1_2:+9994505 | None:intergenic |
| ATATCCGTTGCTCCTGATTT+TGG | 0.234851 | 1_2:-9996712 | Msa0055140:CDS |
| GATGATCTTTCTTCTCTTTG+TGG | 0.265277 | 1_2:-9994394 | Msa0055140:CDS |
| AAACCTGATATTTCCCATTC+TGG | 0.280562 | 1_2:+9996919 | None:intergenic |
| GGTTGGGATCCAATTGCTTA+TGG | 0.285735 | 1_2:-9996655 | Msa0055140:CDS |
| TGAATGGTCATCTTCTATAT+TGG | 0.308808 | 1_2:+9994774 | None:intergenic |
| CAAAGAATAAAAGTGATTAA+AGG | 0.309159 | 1_2:-9996796 | Msa0055140:CDS |
| ACTTGTATACAATGTTTGTA+TGG | 0.316705 | 1_2:+9996681 | None:intergenic |
| AAGAAACTCTCATCGCCTTA+TGG | 0.317677 | 1_2:+9994331 | None:intergenic |
| CCAAAACCATCAGAGCTAAA+AGG | 0.348443 | 1_2:-9996973 | Msa0055140:CDS |
| TGCTGGTAAAGACACAATTA+AGG | 0.351879 | 1_2:-9994530 | Msa0055140:CDS |
| TTTGCAATTAGCAATGTTAC+AGG | 0.352622 | 1_2:+9999214 | None:intergenic |
| TTTGAATCCACCTTTACCTT+TGG | 0.354730 | 1_2:+9994495 | None:intergenic |
| CACTTAAGTTTGTAGCTGTT+GGG | 0.356396 | 1_2:-9994465 | Msa0055140:CDS |
| CACTTACTATTAGAAGCTTT+AGG | 0.364523 | 1_2:+9996520 | None:intergenic |
| GAATGGTCATCTTCTATATT+GGG | 0.367423 | 1_2:+9994775 | None:intergenic |
| TCAAGTTTGAGAAGAGGATA+TGG | 0.377434 | 1_2:+9999155 | None:intergenic |
| ATCACTCCATATGATGTGTT+AGG | 0.384394 | 1_2:+9994805 | None:intergenic |
| CTCACTGCATATGCACCTTC+TGG | 0.384872 | 1_2:+9996844 | None:intergenic |
| ATAGGCAAACCCGGACAAAA+TGG | 0.392577 | 1_2:+9994244 | None:intergenic |
| TCCATCTGGATTTATTCATC+TGG | 0.401254 | 1_2:-9994279 | Msa0055140:three_prime_UTR |
| GTCTCCCTCTCACTCATTGA+TGG | 0.401514 | 1_2:-9999054 | Msa0055140:intron |
| ATACCAGAATGGGAAATATC+AGG | 0.401676 | 1_2:-9996922 | Msa0055140:CDS |
| GCTTTAAAACCATAAGCAAT+TGG | 0.419076 | 1_2:+9996646 | None:intergenic |
| CTAAAAGGAACAGTGGTAAC+TGG | 0.422716 | 1_2:-9996958 | Msa0055140:CDS |
| GCACTTAAGTTTGTAGCTGT+TGG | 0.424811 | 1_2:-9994466 | Msa0055140:CDS |
| AACTTGACATCATCAATAAC+AGG | 0.428308 | 1_2:+9994370 | None:intergenic |
| TGAATATGATGTTGTTGAAA+TGG | 0.433098 | 1_2:-9996623 | Msa0055140:CDS |
| ATATTCCCTAACACATCATA+TGG | 0.435096 | 1_2:-9994811 | Msa0055140:CDS |
| TTATTGATTCTGTTGCTCTC+AGG | 0.435559 | 1_2:-9996555 | Msa0055140:CDS |
| AAGGATTCTACCATCCATCC+TGG | 0.450439 | 1_2:+9994745 | None:intergenic |
| TGTACAGGACTAGTGGCAAA+TGG | 0.453001 | 1_2:-9997012 | Msa0055140:intron |
| TTAGTAGAATACATAAAATC+AGG | 0.457389 | 1_2:-9996898 | Msa0055140:CDS |
| CTTAGCGTGCGTAAACCATA+AGG | 0.460821 | 1_2:-9994346 | Msa0055140:exon |
| TCCATCCTGGGAGGGGTGAA+TGG | 0.464160 | 1_2:+9994758 | None:intergenic |
| CAAGTTGCTAGAACAATTCC+AGG | 0.464538 | 1_2:-9994628 | Msa0055140:CDS |
| AAGAAGGCGCGAGAATGAAA+TGG | 0.491575 | 1_2:+9999189 | None:intergenic |
| ATGGGAATAACACCAAAATC+AGG | 0.492000 | 1_2:+9996700 | None:intergenic |
| CATAAACAAGAACACATTCA+TGG | 0.495034 | 1_2:+9999104 | None:intergenic |
| TCTACTGCTCTTGTGCCTTG+TGG | 0.498859 | 1_2:+9994682 | None:intergenic |
| TTGAGAAGAGGATATGGTAT+GGG | 0.502194 | 1_2:+9999161 | None:intergenic |
| CCTTATTCATCCAAAGGTAA+AGG | 0.506212 | 1_2:-9994505 | Msa0055140:CDS |
| ATTGTATACAAGTAGTGGTT+GGG | 0.508907 | 1_2:-9996671 | Msa0055140:CDS |
| CTTGTATACAATGTTTGTAT+GGG | 0.513275 | 1_2:+9996682 | None:intergenic |
| TCAATAAGAGGTCCACAAGC+AGG | 0.514610 | 1_2:+9996571 | None:intergenic |
| CAATGAGTGAGAGGGAGACA+TGG | 0.518955 | 1_2:+9999058 | None:intergenic |
| TCACTCCATATGATGTGTTA+GGG | 0.524767 | 1_2:+9994806 | None:intergenic |
| TTTGAGAAGAGGATATGGTA+TGG | 0.530891 | 1_2:+9999160 | None:intergenic |
| GTACAGGACTAGTGGCAAAT+GGG | 0.532908 | 1_2:-9997011 | Msa0055140:intron |
| CTTCATTCAAGTTTGAGAAG+AGG | 0.533584 | 1_2:+9999149 | None:intergenic |
| TCTACCATCCATCCTGGGAG+GGG | 0.534305 | 1_2:+9994751 | None:intergenic |
| AAGGTTCCTTATTCATCCAA+AGG | 0.534346 | 1_2:-9994511 | Msa0055140:CDS |
| TATGGTATGGGAAGGAAAGA+AGG | 0.536527 | 1_2:+9999173 | None:intergenic |
| TAGCTGTTGGGACAAGAACA+AGG | 0.536783 | 1_2:-9994453 | Msa0055140:CDS |
| CATTGTATACAAGTAGTGGT+TGG | 0.537679 | 1_2:-9996672 | Msa0055140:CDS |
| TGAGAGGGAGACATGGAAAG+TGG | 0.555486 | 1_2:+9999065 | None:intergenic |
| TATTCATAATCCTGGTGTTG+AGG | 0.556059 | 1_2:-9996599 | Msa0055140:CDS |
| GATGTGTTAGGGAATATATA+AGG | 0.557138 | 1_2:+9994817 | None:intergenic |
| TTACTATTAGAAGCTTTAGG+AGG | 0.557212 | 1_2:+9996523 | None:intergenic |
| CTGAGAAATGACCCGAGTCT+AGG | 0.557412 | 1_2:+9994707 | None:intergenic |
| GAAATGGTTATTCATAATCC+TGG | 0.558117 | 1_2:-9996607 | Msa0055140:CDS |
| ACCATTCACCCCTCCCAGGA+TGG | 0.561579 | 1_2:-9994759 | Msa0055140:CDS |
| ATCTGGATTTATTCATCTGG+CGG | 0.562198 | 1_2:-9994276 | Msa0055140:three_prime_UTR |
| AGCAGTAAAATACCTAGACT+CGG | 0.564165 | 1_2:-9994719 | Msa0055140:CDS |
| TTCACCCCTCCCAGGATGGA+TGG | 0.564481 | 1_2:-9994755 | Msa0055140:CDS |
| AGAGCAACAGAATCAATAAG+AGG | 0.567476 | 1_2:+9996559 | None:intergenic |
| TTCTACCATCCATCCTGGGA+GGG | 0.568707 | 1_2:+9994750 | None:intergenic |
| TGGTCATCTTCTATATTGGG+TGG | 0.571757 | 1_2:+9994778 | None:intergenic |
| CACAAGAGCAGTAGAACTAG+TGG | 0.572866 | 1_2:-9994674 | Msa0055140:CDS |
| AGGATTCTACCATCCATCCT+GGG | 0.576477 | 1_2:+9994746 | None:intergenic |
| TATTCATCCAAAGGTAAAGG+TGG | 0.579509 | 1_2:-9994502 | Msa0055140:CDS |
| AACACCAAAATCAGGAGCAA+CGG | 0.584828 | 1_2:+9996708 | None:intergenic |
| CAAACATTGTATACAAGTAG+TGG | 0.588966 | 1_2:-9996676 | Msa0055140:CDS |
| GTTGAGGAAGATCCTGCTTG+TGG | 0.590134 | 1_2:-9996583 | Msa0055140:CDS |
| GATGACCATTCACCCCTCCC+AGG | 0.591765 | 1_2:-9994763 | Msa0055140:CDS |
| GGTCATCTTCTATATTGGGT+GGG | 0.591855 | 1_2:+9994779 | None:intergenic |
| GCCAGATGAATAAATCCAGA+TGG | 0.592612 | 1_2:+9994278 | None:intergenic |
| AGAGCAGTAGAACTAGTGGC+AGG | 0.596449 | 1_2:-9994670 | Msa0055140:CDS |
| TTGCAATTAGCAATGTTACA+GGG | 0.599891 | 1_2:+9999215 | None:intergenic |
| GAAGAGGATATGGTATGGGA+AGG | 0.601005 | 1_2:+9999165 | None:intergenic |
| GGTGCATATGCAGTGAGACT+AGG | 0.601052 | 1_2:-9996838 | Msa0055140:CDS |
| ACTTACCATCAATGAGTGAG+AGG | 0.604105 | 1_2:+9999049 | None:intergenic |
| TGATATTTGTACAGGACTAG+TGG | 0.607209 | 1_2:-9997019 | Msa0055140:intron |
| GCAGTAAAATACCTAGACTC+GGG | 0.616478 | 1_2:-9994718 | Msa0055140:CDS |
| GCAGGATCTTCCTCAACACC+AGG | 0.631161 | 1_2:+9996589 | None:intergenic |
| GGTGTCCAGATAGGCAAACC+CGG | 0.634610 | 1_2:+9994235 | None:intergenic |
| CTTACCATCAATGAGTGAGA+GGG | 0.634839 | 1_2:+9999050 | None:intergenic |
| ATCAGAGCTAAAAGGAACAG+TGG | 0.653099 | 1_2:-9996965 | Msa0055140:CDS |
| GAAAGTGGAACAGAAAAGCA+AGG | 0.653658 | 1_2:+9999080 | None:intergenic |
| GATGCAAGTAATTCATGTGA+AGG | 0.655767 | 1_2:-9994574 | Msa0055140:CDS |
| CATCACCAACTGAAAATGAG+AGG | 0.658666 | 1_2:+9994593 | None:intergenic |
| GGTCATTTCTCAGTTCCACA+AGG | 0.663955 | 1_2:-9994697 | Msa0055140:CDS |
| AACTGAAAATGAGAGGACAT+AGG | 0.664170 | 1_2:+9994600 | None:intergenic |
| ATGTTACTAGTTGTACCAGA+AGG | 0.668517 | 1_2:-9996859 | Msa0055140:CDS |
| AAAGGAACAGTGGTAACTGG+AGG | 0.683482 | 1_2:-9996955 | Msa0055140:CDS |
| ATTCTACCATCCATCCTGGG+AGG | 0.697643 | 1_2:+9994749 | None:intergenic |
| TAAAGGTGGATTCAAACGTG+CGG | 0.707257 | 1_2:-9994488 | Msa0055140:CDS |
| AGCTGTTGGGACAAGAACAA+GGG | 0.708580 | 1_2:-9994452 | Msa0055140:CDS |
| AAACAAGAACACATTCATGG+TGG | 0.732804 | 1_2:+9999107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAACAGTTTTATATTAT+TGG | - | chr1_2:9995766-9995785 | Msa0055140:intron | 10.0% |
| !!! | TATGGTTTGTATTTTTATTT+TGG | + | chr1_2:9994769-9994788 | None:intergenic | 15.0% |
| !! | TGAAATTATTGCAAAAATTA+CGG | + | chr1_2:9995070-9995089 | None:intergenic | 15.0% |
| !! | GTATTTAAAAATAGAAATGA+TGG | - | chr1_2:9995165-9995184 | Msa0055140:intron | 15.0% |
| !!! | TACTACTTTTATGTAAAAAT+TGG | + | chr1_2:9995373-9995392 | None:intergenic | 15.0% |
| !! | AAAAATACAAATAATTTGAC+TGG | + | chr1_2:9995492-9995511 | None:intergenic | 15.0% |
| !!! | TTTTAGAAACTATAAAAAAG+TGG | - | chr1_2:9995719-9995738 | Msa0055140:intron | 15.0% |
| !!! | CTAATTTGATTTTTTTTGAA+AGG | - | chr1_2:9995998-9996017 | Msa0055140:intron | 15.0% |
| !!! | GTATTATTCAATAACTTTTA+TGG | - | chr1_2:9996671-9996690 | Msa0055140:CDS | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | - | chr1_2:9997104-9997123 | Msa0055140:intron | 15.0% |
| !! | TAATACTCATAAATCTATTT+AGG | - | chr1_2:9997480-9997499 | Msa0055140:intron | 15.0% |
| !!! | TAAGTGTTTAAGTTAAAATA+AGG | - | chr1_2:9997576-9997595 | Msa0055140:intron | 15.0% |
| !! | TATATTAATGTATATACACA+GGG | - | chr1_2:9998032-9998051 | Msa0055140:intron | 15.0% |
| !! | AGACATTATTCTATTTATAA+GGG | + | chr1_2:9998314-9998333 | None:intergenic | 15.0% |
| !! | TAGACATTATTCTATTTATA+AGG | + | chr1_2:9998315-9998334 | None:intergenic | 15.0% |
| !!! | ATACATGTAATTTTAAACTT+TGG | - | chr1_2:9998369-9998388 | Msa0055140:intron | 15.0% |
| !! | ATTATTATCATACTAAATGT+TGG | - | chr1_2:9998458-9998477 | Msa0055140:intron | 15.0% |
| !!! | GATTTTTGTCATTGTAATTT+TGG | + | chr1_2:9994706-9994725 | None:intergenic | 20.0% |
| !!! | TTTTCTAGTTATATATCTAG+GGG | + | chr1_2:9994904-9994923 | None:intergenic | 20.0% |
| !!! | GTTTTCTAGTTATATATCTA+GGG | + | chr1_2:9994905-9994924 | None:intergenic | 20.0% |
| !!! | TGTTTTCTAGTTATATATCT+AGG | + | chr1_2:9994906-9994925 | None:intergenic | 20.0% |
| !!! | AAATAGAAATGATGGTTTTT+TGG | - | chr1_2:9995173-9995192 | Msa0055140:intron | 20.0% |
| !! | AAAAGTAGTAGAATTTGTAT+TGG | - | chr1_2:9995383-9995402 | Msa0055140:intron | 20.0% |
| !! | ATCTCATAAAATTTACTAGA+CGG | + | chr1_2:9995519-9995538 | None:intergenic | 20.0% |
| !! | AGATAATAATAATAATGCCT+TGG | + | chr1_2:9995637-9995656 | None:intergenic | 20.0% |
| !! | ACAAATTATATCTAACATAG+AGG | - | chr1_2:9995794-9995813 | Msa0055140:intron | 20.0% |
| !!! | TAAATGAATATGTGTCTTTT+GGG | - | chr1_2:9995839-9995858 | Msa0055140:intron | 20.0% |
| !! | CAAATATCATACATCAATTT+AGG | + | chr1_2:9996411-9996430 | None:intergenic | 20.0% |
| !! | TTAGTAGAATACATAAAATC+AGG | - | chr1_2:9996543-9996562 | Msa0055140:CDS | 20.0% |
| !! | CAAAGAATAAAAGTGATTAA+AGG | - | chr1_2:9996645-9996664 | Msa0055140:CDS | 20.0% |
| !!! | TTATTCAATAACTTTTATGG+TGG | - | chr1_2:9996674-9996693 | Msa0055140:CDS | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | - | chr1_2:9997194-9997213 | Msa0055140:intron | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | - | chr1_2:9997195-9997214 | Msa0055140:intron | 20.0% |
| !!! | AAGTGTAGTACTTATTTTTT+TGG | - | chr1_2:9997529-9997548 | Msa0055140:intron | 20.0% |
| !! | ACCTAAAGATAATTAATCTA+GGG | + | chr1_2:9997768-9997787 | None:intergenic | 20.0% |
| !! | GCTAGTTAAATAGTATATAT+TGG | - | chr1_2:9997953-9997972 | Msa0055140:intron | 20.0% |
| !! | GTATATTAATGTATATACAC+AGG | - | chr1_2:9998031-9998050 | Msa0055140:intron | 20.0% |
| !! | CCAATAAAAGTTTAATAGTA+TGG | + | chr1_2:9998110-9998129 | None:intergenic | 20.0% |
| !!! | CCATACTATTAAACTTTTAT+TGG | - | chr1_2:9998107-9998126 | Msa0055140:intron | 20.0% |
| !! | GACATTATTCTATTTATAAG+GGG | + | chr1_2:9998313-9998332 | None:intergenic | 20.0% |
| !!! | ATTTTTTAATATGTTCTCTG+TGG | + | chr1_2:9998586-9998605 | None:intergenic | 20.0% |
| !! | ACAGAGAACATATTAAAAAA+TGG | - | chr1_2:9998585-9998604 | Msa0055140:intron | 20.0% |
| ! | CTAAACATCTTAAACAATGT+TGG | - | chr1_2:9994467-9994486 | Msa0055140:CDS | 25.0% |
| !!! | AATGTTGGTTAGTATCATTT+TGG | - | chr1_2:9994482-9994501 | Msa0055140:CDS | 25.0% |
| !! | ATGTTCTTTGTTAGTCATTT+TGG | - | chr1_2:9994575-9994594 | Msa0055140:CDS | 25.0% |
| !! | TTTAAGATGTGTTTGTAGTT+TGG | - | chr1_2:9994673-9994692 | Msa0055140:CDS | 25.0% |
| !!! | ACATTTTCAACTTTAGCTTA+TGG | + | chr1_2:9994787-9994806 | None:intergenic | 25.0% |
| ! | AAGCTAAAGTTGAAAATGTT+TGG | - | chr1_2:9994788-9994807 | Msa0055140:CDS | 25.0% |
| ! | AGCTAAAGTTGAAAATGTTT+GGG | - | chr1_2:9994789-9994808 | Msa0055140:CDS | 25.0% |
| ! | GAACAAATCTACAACAATAA+TGG | + | chr1_2:9995003-9995022 | None:intergenic | 25.0% |
| ! | TTGTTCTAGTACATAGTATT+TGG | - | chr1_2:9995017-9995036 | Msa0055140:intron | 25.0% |
| ! | TAACCATAGTATATAGTACT+AGG | + | chr1_2:9995116-9995135 | None:intergenic | 25.0% |
| ! | TATATTAGATCATTTGACCT+GGG | - | chr1_2:9995412-9995431 | Msa0055140:intron | 25.0% |
| ! | TCTCATAAAATTTACTAGAC+GGG | + | chr1_2:9995518-9995537 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATACAATG+TGG | - | chr1_2:9995530-9995549 | Msa0055140:intron | 25.0% |
| !! | TGGTAAAATTTTTGTAGAAG+TGG | - | chr1_2:9995679-9995698 | Msa0055140:intron | 25.0% |
| !! | TAAAATTTTTGTAGAAGTGG+TGG | - | chr1_2:9995682-9995701 | Msa0055140:intron | 25.0% |
| !! | GTAAATGAATATGTGTCTTT+TGG | - | chr1_2:9995838-9995857 | Msa0055140:intron | 25.0% |
| ! | TCTATAATATGATTGTCTGT+CGG | - | chr1_2:9996179-9996198 | Msa0055140:intron | 25.0% |
| !!! | TTATAAGTTTTGGCAAATAG+TGG | - | chr1_2:9996272-9996291 | Msa0055140:intron | 25.0% |
| ! | TCCTTAATCTTGATTGAAAT+AGG | + | chr1_2:9996357-9996376 | None:intergenic | 25.0% |
| !! | ATCATACATCAATTTAGGTT+AGG | + | chr1_2:9996406-9996425 | None:intergenic | 25.0% |
| ! | TTGATGTATGATATTTGTAC+AGG | - | chr1_2:9996414-9996433 | Msa0055140:intron | 25.0% |
| ! | ATAAAATCAGGACAAAAACA+AGG | - | chr1_2:9996555-9996574 | Msa0055140:CDS | 25.0% |
| ! | CTTGTATACAATGTTTGTAT+GGG | + | chr1_2:9996762-9996781 | None:intergenic | 25.0% |
| ! | ACTTGTATACAATGTTTGTA+TGG | + | chr1_2:9996763-9996782 | None:intergenic | 25.0% |
| ! | TGAATATGATGTTGTTGAAA+TGG | - | chr1_2:9996818-9996837 | Msa0055140:CDS | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr1_2:9997060-9997079 | Msa0055140:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr1_2:9997163-9997182 | Msa0055140:intron | 25.0% |
| ! | ATTATCACATGATAGATGAA+GGG | + | chr1_2:9997464-9997483 | None:intergenic | 25.0% |
| ! | TATTATCACATGATAGATGA+AGG | + | chr1_2:9997465-9997484 | None:intergenic | 25.0% |
| !! | CTACATATTTGACTTTAAAG+TGG | + | chr1_2:9997647-9997666 | None:intergenic | 25.0% |
| !!! | CACTTTAAAGTCAAATATGT+AGG | - | chr1_2:9997645-9997664 | Msa0055140:intron | 25.0% |
| ! | AAAGTCAAATATGTAGGTAT+TGG | - | chr1_2:9997651-9997670 | Msa0055140:intron | 25.0% |
| ! | TAAGTTAAGTATAGACCAAA+TGG | + | chr1_2:9997725-9997744 | None:intergenic | 25.0% |
| ! | TCCCTAGATTAATTATCTTT+AGG | - | chr1_2:9997764-9997783 | Msa0055140:intron | 25.0% |
| ! | GACCTAAAGATAATTAATCT+AGG | + | chr1_2:9997769-9997788 | None:intergenic | 25.0% |
| ! | GAGAACATATTAAAAAATGG+TGG | - | chr1_2:9998588-9998607 | Msa0055140:intron | 25.0% |
| ! | AACGCGTTTAAAAATTCATA+GGG | + | chr1_2:9999142-9999161 | None:intergenic | 25.0% |
| ! | AAACGCGTTTAAAAATTCAT+AGG | + | chr1_2:9999143-9999162 | None:intergenic | 25.0% |
| !! | GAAAAAAATACCATTTTGTC+CGG | - | chr1_2:9999187-9999206 | Msa0055140:five_prime_UTR | 25.0% |
| !! | AAAAAAATACCATTTTGTCC+GGG | - | chr1_2:9999188-9999207 | Msa0055140:five_prime_UTR | 25.0% |
| CATAAACAAGAACACATTCA+TGG | + | chr1_2:9994340-9994359 | None:intergenic | 30.0% | |
| !! | TTGGTTCTAAAATGTATGAG+AGG | - | chr1_2:9994501-9994520 | Msa0055140:CDS | 30.0% |
| !! | AGTACATGTGTTACTTTGTA+GGG | - | chr1_2:9994834-9994853 | Msa0055140:CDS | 30.0% |
| TTATATATCTAGGGGAAACA+AGG | + | chr1_2:9994896-9994915 | None:intergenic | 30.0% | |
| !! | ATTGGTTTGTAGCTAGTTAA+AGG | + | chr1_2:9995355-9995374 | None:intergenic | 30.0% |
| ! | GTAGTAGAATTTGTATTGGT+TGG | - | chr1_2:9995387-9995406 | Msa0055140:intron | 30.0% |
| CTATATTAGATCATTTGACC+TGG | - | chr1_2:9995411-9995430 | Msa0055140:intron | 30.0% | |
| TAACATAGAGGTGATTTGAT+TGG | - | chr1_2:9995806-9995825 | Msa0055140:intron | 30.0% | |
| GTGATTTGATTGGATATACA+TGG | - | chr1_2:9995816-9995835 | Msa0055140:intron | 30.0% | |
| CCAATTATTGTCATTGGAAA+AGG | + | chr1_2:9996221-9996240 | None:intergenic | 30.0% | |
| ! | CCTTTTCCAATGACAATAAT+TGG | - | chr1_2:9996218-9996237 | Msa0055140:intron | 30.0% |
| TGCAATCCAATTATTGTCAT+TGG | + | chr1_2:9996227-9996246 | None:intergenic | 30.0% | |
| GCCTATTTCAATCAAGATTA+AGG | - | chr1_2:9996353-9996372 | Msa0055140:intron | 30.0% | |
| CAAAAACTCAATACCAGAAT+GGG | - | chr1_2:9996509-9996528 | Msa0055140:intron | 30.0% | |
| CAAACATTGTATACAAGTAG+TGG | - | chr1_2:9996765-9996784 | Msa0055140:CDS | 30.0% | |
| ATTGTATACAAGTAGTGGTT+GGG | - | chr1_2:9996770-9996789 | Msa0055140:CDS | 30.0% | |
| !! | GCTTTAAAACCATAAGCAAT+TGG | + | chr1_2:9996798-9996817 | None:intergenic | 30.0% |
| GAAATGGTTATTCATAATCC+TGG | - | chr1_2:9996834-9996853 | Msa0055140:CDS | 30.0% | |
| !! | TTACTATTAGAAGCTTTAGG+AGG | + | chr1_2:9996921-9996940 | None:intergenic | 30.0% |
| CACTTACTATTAGAAGCTTT+AGG | + | chr1_2:9996924-9996943 | None:intergenic | 30.0% | |
| ATATTCAAAGCTGAACCAAA+CGG | + | chr1_2:9996986-9997005 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr1_2:9997381-9997400 | Msa0055140:intron | 30.0% |
| !! | CACTGTAGAGAATTGATTTT+GGG | - | chr1_2:9997404-9997423 | Msa0055140:intron | 30.0% |
| TTGTAGATGTAAGAACCATT+TGG | - | chr1_2:9997707-9997726 | Msa0055140:intron | 30.0% | |
| ATTGTTCACATGTGAAGATT+TGG | + | chr1_2:9997797-9997816 | None:intergenic | 30.0% | |
| ! | ATTTAACTAGCTTCCTTGAT+AGG | + | chr1_2:9997944-9997963 | None:intergenic | 30.0% |
| ATATCAGACACTAAAACCAA+TGG | - | chr1_2:9998001-9998020 | Msa0055140:intron | 30.0% | |
| !! | AAAAATGGTGGATTTGAAGA+AGG | - | chr1_2:9998600-9998619 | Msa0055140:intron | 30.0% |
| GATGTGTTAGGGAATATATA+AGG | + | chr1_2:9998627-9998646 | None:intergenic | 30.0% | |
| ATATTCCCTAACACATCATA+TGG | - | chr1_2:9998630-9998649 | Msa0055140:intron | 30.0% | |
| GAATGGTCATCTTCTATATT+GGG | + | chr1_2:9998669-9998688 | None:intergenic | 30.0% | |
| TGAATGGTCATCTTCTATAT+TGG | + | chr1_2:9998670-9998689 | None:intergenic | 30.0% | |
| AACTTGACATCATCAATAAC+AGG | + | chr1_2:9999074-9999093 | None:intergenic | 30.0% | |
| CGTTTAAAAATTCATAGGGT+AGG | + | chr1_2:9999138-9999157 | None:intergenic | 30.0% | |
| TTGAGAAGAGGATATGGTAT+GGG | + | chr1_2:9994283-9994302 | None:intergenic | 35.0% | |
| TTTGAGAAGAGGATATGGTA+TGG | + | chr1_2:9994284-9994303 | None:intergenic | 35.0% | |
| TCAAGTTTGAGAAGAGGATA+TGG | + | chr1_2:9994289-9994308 | None:intergenic | 35.0% | |
| ! | CTTCATTCAAGTTTGAGAAG+AGG | + | chr1_2:9994295-9994314 | None:intergenic | 35.0% |
| AAACAAGAACACATTCATGG+TGG | + | chr1_2:9994337-9994356 | None:intergenic | 35.0% | |
| ! | AAGTAACACATGTACTGGTA+AGG | + | chr1_2:9994830-9994849 | None:intergenic | 35.0% |
| CTACAAAGTAACACATGTAC+TGG | + | chr1_2:9994835-9994854 | None:intergenic | 35.0% | |
| !! | CAGTACATGTGTTACTTTGT+AGG | - | chr1_2:9994833-9994852 | Msa0055140:CDS | 35.0% |
| GCACCTAGTACTATATACTA+TGG | - | chr1_2:9995110-9995129 | Msa0055140:intron | 35.0% | |
| TGATGGTCTGAAAAATCACA+TGG | - | chr1_2:9995233-9995252 | Msa0055140:intron | 35.0% | |
| GATGGTCTGAAAAATCACAT+GGG | - | chr1_2:9995234-9995253 | Msa0055140:intron | 35.0% | |
| ATGGTCTGAAAAATCACATG+GGG | - | chr1_2:9995235-9995254 | Msa0055140:intron | 35.0% | |
| ACTTATCACAAATGTCTCAG+AGG | - | chr1_2:9995321-9995340 | Msa0055140:intron | 35.0% | |
| !! | GAATGAAAGATAGTGGAAAG+TGG | + | chr1_2:9995440-9995459 | None:intergenic | 35.0% |
| GGACAAAGAATGAAAGATAG+TGG | + | chr1_2:9995447-9995466 | None:intergenic | 35.0% | |
| CTAGACATGATCTAATACCA+AGG | - | chr1_2:9995617-9995636 | Msa0055140:intron | 35.0% | |
| ! | ATAGGTTTAGCTTAGCTTGA+TGG | - | chr1_2:9995659-9995678 | Msa0055140:intron | 35.0% |
| !! | TGAATATGTGTCTTTTGGGT+AGG | - | chr1_2:9995843-9995862 | Msa0055140:intron | 35.0% |
| !! | TATGATTGTCTGTCGGTTTA+TGG | - | chr1_2:9996186-9996205 | Msa0055140:intron | 35.0% |
| TGATATTTGTACAGGACTAG+TGG | - | chr1_2:9996422-9996441 | Msa0055140:intron | 35.0% | |
| GCAAAAACTCAATACCAGAA+TGG | - | chr1_2:9996508-9996527 | Msa0055140:intron | 35.0% | |
| ATACCAGAATGGGAAATATC+AGG | - | chr1_2:9996519-9996538 | Msa0055140:intron | 35.0% | |
| AAACCTGATATTTCCCATTC+TGG | + | chr1_2:9996525-9996544 | None:intergenic | 35.0% | |
| ATGTTACTAGTTGTACCAGA+AGG | - | chr1_2:9996582-9996601 | Msa0055140:CDS | 35.0% | |
| ATGGGAATAACACCAAAATC+AGG | + | chr1_2:9996744-9996763 | None:intergenic | 35.0% | |
| CATTGTATACAAGTAGTGGT+TGG | - | chr1_2:9996769-9996788 | Msa0055140:CDS | 35.0% | |
| ! | TATTCATAATCCTGGTGTTG+AGG | - | chr1_2:9996842-9996861 | Msa0055140:CDS | 35.0% |
| AGAGCAACAGAATCAATAAG+AGG | + | chr1_2:9996885-9996904 | None:intergenic | 35.0% | |
| !! | TTATTGATTCTGTTGCTCTC+AGG | - | chr1_2:9996886-9996905 | Msa0055140:CDS | 35.0% |
| TATTCAAAGCTGAACCAAAC+GGG | + | chr1_2:9996985-9997004 | None:intergenic | 35.0% | |
| AAACCTATACACGTTGTTCA+AGG | - | chr1_2:9997257-9997276 | Msa0055140:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr1_2:9997288-9997307 | Msa0055140:intron | 35.0% |
| !! | TGAACCAAACACGTTGTTTT+TGG | - | chr1_2:9997365-9997384 | Msa0055140:intron | 35.0% |
| !! | GCACTGTAGAGAATTGATTT+TGG | - | chr1_2:9997403-9997422 | Msa0055140:intron | 35.0% |
| AGCTGGATTAATACCTATCA+AGG | - | chr1_2:9997928-9997947 | Msa0055140:intron | 35.0% | |
| TTAATATACAGCCACACCAT+TGG | + | chr1_2:9998020-9998039 | None:intergenic | 35.0% | |
| TCATTGCATTGTGTGTCATA+CGG | - | chr1_2:9998216-9998235 | Msa0055140:intron | 35.0% | |
| ACTTGCCTTTAGCAAAGAAA+AGG | - | chr1_2:9998266-9998285 | Msa0055140:intron | 35.0% | |
| CTTGCCTTTAGCAAAGAAAA+GGG | - | chr1_2:9998267-9998286 | Msa0055140:intron | 35.0% | |
| ! | AGATCCCTTTTCTTTGCTAA+AGG | + | chr1_2:9998274-9998293 | None:intergenic | 35.0% |
| GTCATACATGAACTAAATCG+AGG | - | chr1_2:9998419-9998438 | Msa0055140:intron | 35.0% | |
| CAACATCATTTGCACTATGT+TGG | - | chr1_2:9998493-9998512 | Msa0055140:intron | 35.0% | |
| TCACTCCATATGATGTGTTA+GGG | + | chr1_2:9998638-9998657 | None:intergenic | 35.0% | |
| ATCACTCCATATGATGTGTT+AGG | + | chr1_2:9998639-9998658 | None:intergenic | 35.0% | |
| AACTGAAAATGAGAGGACAT+AGG | + | chr1_2:9998844-9998863 | None:intergenic | 35.0% | |
| ! | TATGTCCTCTCATTTTCAGT+TGG | - | chr1_2:9998843-9998862 | Msa0055140:intron | 35.0% |
| GATGCAAGTAATTCATGTGA+AGG | - | chr1_2:9998867-9998886 | Msa0055140:intron | 35.0% | |
| ! | ATGATTGTTGAAGCTTTTGC+TGG | - | chr1_2:9998894-9998913 | Msa0055140:intron | 35.0% |
| TGCTGGTAAAGACACAATTA+AGG | - | chr1_2:9998911-9998930 | Msa0055140:intron | 35.0% | |
| AAGGTTCCTTATTCATCCAA+AGG | - | chr1_2:9998930-9998949 | Msa0055140:intron | 35.0% | |
| CCTTTACCTTTGGATGAATA+AGG | + | chr1_2:9998939-9998958 | None:intergenic | 35.0% | |
| CCTTATTCATCCAAAGGTAA+AGG | - | chr1_2:9998936-9998955 | Msa0055140:intron | 35.0% | |
| TATTCATCCAAAGGTAAAGG+TGG | - | chr1_2:9998939-9998958 | Msa0055140:intron | 35.0% | |
| TTTGAATCCACCTTTACCTT+TGG | + | chr1_2:9998949-9998968 | None:intergenic | 35.0% | |
| CACTTAAGTTTGTAGCTGTT+GGG | - | chr1_2:9998976-9998995 | Msa0055140:intron | 35.0% | |
| GATGATCTTTCTTCTCTTTG+TGG | - | chr1_2:9999047-9999066 | Msa0055140:intron | 35.0% | |
| ! | TTTTTAAACGCGTTTCCATC+TGG | - | chr1_2:9999148-9999167 | Msa0055140:exon | 35.0% |
| TCCATCTGGATTTATTCATC+TGG | - | chr1_2:9999162-9999181 | Msa0055140:five_prime_UTR | 35.0% | |
| ATCTGGATTTATTCATCTGG+CGG | - | chr1_2:9999165-9999184 | Msa0055140:five_prime_UTR | 35.0% | |
| TATGGTATGGGAAGGAAAGA+AGG | + | chr1_2:9994271-9994290 | None:intergenic | 40.0% | |
| GAAAGTGGAACAGAAAAGCA+AGG | + | chr1_2:9994364-9994383 | None:intergenic | 40.0% | |
| CTTACCATCAATGAGTGAGA+GGG | + | chr1_2:9994394-9994413 | None:intergenic | 40.0% | |
| ACTTACCATCAATGAGTGAG+AGG | + | chr1_2:9994395-9994414 | None:intergenic | 40.0% | |
| !! | TGTGTTACTTTGTAGGGACT+TGG | - | chr1_2:9994840-9994859 | Msa0055140:CDS | 40.0% |
| TTGGACCCTCTCATATTCTT+TGG | - | chr1_2:9995192-9995211 | Msa0055140:intron | 40.0% | |
| TGGACCCTCTCATATTCTTT+GGG | - | chr1_2:9995193-9995212 | Msa0055140:intron | 40.0% | |
| CGTACCCAAAGAATATGAGA+GGG | + | chr1_2:9995200-9995219 | None:intergenic | 40.0% | |
| TCGTACCCAAAGAATATGAG+AGG | + | chr1_2:9995201-9995220 | None:intergenic | 40.0% | |
| GACATTTGTGATAAGTCACG+TGG | + | chr1_2:9995317-9995336 | None:intergenic | 40.0% | |
| CCACTGTAGGAAATCAAATC+AGG | + | chr1_2:9995468-9995487 | None:intergenic | 40.0% | |
| ! | CCTGATTTGATTTCCTACAG+TGG | - | chr1_2:9995465-9995484 | Msa0055140:intron | 40.0% |
| TAATTTGACTGGACCACTGT+AGG | + | chr1_2:9995481-9995500 | None:intergenic | 40.0% | |
| ! | GCAAATGGGAATTTTGAGCT+TGG | - | chr1_2:9996444-9996463 | Msa0055140:intron | 40.0% |
| !!! | CCTTTTAGCTCTGATGGTTT+TGG | + | chr1_2:9996471-9996490 | None:intergenic | 40.0% |
| CCAAAACCATCAGAGCTAAA+AGG | - | chr1_2:9996468-9996487 | Msa0055140:intron | 40.0% | |
| !!! | ACTGTTCCTTTTAGCTCTGA+TGG | + | chr1_2:9996477-9996496 | None:intergenic | 40.0% |
| ATCAGAGCTAAAAGGAACAG+TGG | - | chr1_2:9996476-9996495 | Msa0055140:intron | 40.0% | |
| CTAAAAGGAACAGTGGTAAC+TGG | - | chr1_2:9996483-9996502 | Msa0055140:intron | 40.0% | |
| ! | ATATCCGTTGCTCCTGATTT+TGG | - | chr1_2:9996729-9996748 | Msa0055140:CDS | 40.0% |
| AACACCAAAATCAGGAGCAA+CGG | + | chr1_2:9996736-9996755 | None:intergenic | 40.0% | |
| TAAATATCTTCGTGCCCGTT+TGG | - | chr1_2:9996968-9996987 | Msa0055140:CDS | 40.0% | |
| TCTCCTTGAACAACGTGTAT+AGG | + | chr1_2:9997263-9997282 | None:intergenic | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr1_2:9997304-9997323 | Msa0055140:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr1_2:9997318-9997337 | Msa0055140:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr1_2:9997321-9997340 | Msa0055140:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr1_2:9997372-9997391 | None:intergenic | 40.0% | |
| TAATCTAGGGATAGTGCGTT+TGG | + | chr1_2:9997755-9997774 | None:intergenic | 40.0% | |
| CACATGTGAAGATTTGGCAA+TGG | + | chr1_2:9997791-9997810 | None:intergenic | 40.0% | |
| AGCACACAATAGAACATAGC+TGG | - | chr1_2:9997911-9997930 | Msa0055140:intron | 40.0% | |
| AGACACTAAAACCAATGGTG+TGG | - | chr1_2:9998006-9998025 | Msa0055140:intron | 40.0% | |
| GTGTCATACGGAAATCAGTT+AGG | - | chr1_2:9998228-9998247 | Msa0055140:intron | 40.0% | |
| GGTCATCTTCTATATTGGGT+GGG | + | chr1_2:9998665-9998684 | None:intergenic | 40.0% | |
| TGGTCATCTTCTATATTGGG+TGG | + | chr1_2:9998666-9998685 | None:intergenic | 40.0% | |
| CAAGTTGCTAGAACAATTCC+AGG | - | chr1_2:9998813-9998832 | Msa0055140:intron | 40.0% | |
| CATCACCAACTGAAAATGAG+AGG | + | chr1_2:9998851-9998870 | None:intergenic | 40.0% | |
| ! | TAAAGGTGGATTCAAACGTG+CGG | - | chr1_2:9998953-9998972 | Msa0055140:intron | 40.0% |
| GCACTTAAGTTTGTAGCTGT+TGG | - | chr1_2:9998975-9998994 | Msa0055140:intron | 40.0% | |
| AAGAAACTCTCATCGCCTTA+TGG | + | chr1_2:9999113-9999132 | None:intergenic | 40.0% | |
| GCCAGATGAATAAATCCAGA+TGG | + | chr1_2:9999166-9999185 | None:intergenic | 40.0% | |
| ! | AAGAAGGCGCGAGAATGAAA+TGG | + | chr1_2:9994255-9994274 | None:intergenic | 45.0% |
| GAAGAGGATATGGTATGGGA+AGG | + | chr1_2:9994279-9994298 | None:intergenic | 45.0% | |
| ! | TACGAAAAGAGCACGCATGA+TGG | - | chr1_2:9995216-9995235 | Msa0055140:intron | 45.0% |
| ! | TGTACAGGACTAGTGGCAAA+TGG | - | chr1_2:9996429-9996448 | Msa0055140:intron | 45.0% |
| ! | GTACAGGACTAGTGGCAAAT+GGG | - | chr1_2:9996430-9996449 | Msa0055140:intron | 45.0% |
| AAAGGAACAGTGGTAACTGG+AGG | - | chr1_2:9996486-9996505 | Msa0055140:intron | 45.0% | |
| GGTTGGGATCCAATTGCTTA+TGG | - | chr1_2:9996786-9996805 | Msa0055140:CDS | 45.0% | |
| TCAATAAGAGGTCCACAAGC+AGG | + | chr1_2:9996873-9996892 | None:intergenic | 45.0% | |
| TCTCAGAAGCCAAACCAAAC+AGG | - | chr1_2:9997438-9997457 | Msa0055140:intron | 45.0% | |
| TGATAGATGAAGGGCCTGTT+TGG | + | chr1_2:9997455-9997474 | None:intergenic | 45.0% | |
| CACACACTATGTGCTCAAGT+TGG | + | chr1_2:9998397-9998416 | None:intergenic | 45.0% | |
| AGGATTCTACCATCCATCCT+GGG | + | chr1_2:9998698-9998717 | None:intergenic | 45.0% | |
| AAGGATTCTACCATCCATCC+TGG | + | chr1_2:9998699-9998718 | None:intergenic | 45.0% | |
| GGTCATTTCTCAGTTCCACA+AGG | - | chr1_2:9998744-9998763 | Msa0055140:intron | 45.0% | |
| CACAAGAGCAGTAGAACTAG+TGG | - | chr1_2:9998767-9998786 | Msa0055140:intron | 45.0% | |
| TAGCTGTTGGGACAAGAACA+AGG | - | chr1_2:9998988-9999007 | Msa0055140:intron | 45.0% | |
| AGCTGTTGGGACAAGAACAA+GGG | - | chr1_2:9998989-9999008 | Msa0055140:intron | 45.0% | |
| CTTAGCGTGCGTAAACCATA+AGG | - | chr1_2:9999095-9999114 | Msa0055140:CDS | 45.0% | |
| ATAGGCAAACCCGGACAAAA+TGG | + | chr1_2:9999200-9999219 | None:intergenic | 45.0% | |
| !! | ATTATTATTATTATCTATAT+AGG | - | chr1_2:9995641-9995660 | Msa0055140:intron | 5.0% |
| !!! | TTATTTTTTTTTATAAGTTT+TGG | - | chr1_2:9996262-9996281 | Msa0055140:intron | 5.0% |
| TGAGAGGGAGACATGGAAAG+TGG | + | chr1_2:9994379-9994398 | None:intergenic | 50.0% | |
| CAATGAGTGAGAGGGAGACA+TGG | + | chr1_2:9994386-9994405 | None:intergenic | 50.0% | |
| GTCTCCCTCTCACTCATTGA+TGG | - | chr1_2:9994387-9994406 | Msa0055140:CDS | 50.0% | |
| CTCACTGCATATGCACCTTC+TGG | + | chr1_2:9996600-9996619 | None:intergenic | 50.0% | |
| GGTGCATATGCAGTGAGACT+AGG | - | chr1_2:9996603-9996622 | Msa0055140:CDS | 50.0% | |
| GTTGAGGAAGATCCTGCTTG+TGG | - | chr1_2:9996858-9996877 | Msa0055140:CDS | 50.0% | |
| GATGAAGGGCCTGTTTGGTT+TGG | + | chr1_2:9997450-9997469 | None:intergenic | 50.0% | |
| TATATACACAGGGCCAGAGC+AGG | - | chr1_2:9998042-9998061 | Msa0055140:intron | 50.0% | |
| AACATCCTACCTACCTGCTC+TGG | + | chr1_2:9998058-9998077 | None:intergenic | 50.0% | |
| TTCTACCATCCATCCTGGGA+GGG | + | chr1_2:9998694-9998713 | None:intergenic | 50.0% | |
| ATTCTACCATCCATCCTGGG+AGG | + | chr1_2:9998695-9998714 | None:intergenic | 50.0% | |
| CTGAGAAATGACCCGAGTCT+AGG | + | chr1_2:9998737-9998756 | None:intergenic | 50.0% | |
| TCTACTGCTCTTGTGCCTTG+TGG | + | chr1_2:9998762-9998781 | None:intergenic | 50.0% | |
| AGAGCAGTAGAACTAGTGGC+AGG | - | chr1_2:9998771-9998790 | Msa0055140:intron | 50.0% | |
| ! | GAGAGGACATAGGTTTTGCC+TGG | + | chr1_2:9998834-9998853 | None:intergenic | 50.0% |
| TTTGTCCGGGTTTGCCTATC+TGG | - | chr1_2:9999201-9999220 | Msa0055140:five_prime_UTR | 50.0% | |
| ACATGGGGCTGTATGCCAAC+TGG | - | chr1_2:9995250-9995269 | Msa0055140:intron | 55.0% | |
| CATGGGGCTGTATGCCAACT+GGG | - | chr1_2:9995251-9995270 | Msa0055140:intron | 55.0% | |
| ATGGGGCTGTATGCCAACTG+GGG | - | chr1_2:9995252-9995271 | Msa0055140:intron | 55.0% | |
| CACTCATCAACTCCCCCAGT+TGG | + | chr1_2:9995268-9995287 | None:intergenic | 55.0% | |
| !! | GATAGTGGAAAGTGGAGCCC+AGG | + | chr1_2:9995432-9995451 | None:intergenic | 55.0% |
| GCAGGATCTTCCTCAACACC+AGG | + | chr1_2:9996855-9996874 | None:intergenic | 55.0% | |
| TCTACCATCCATCCTGGGAG+GGG | + | chr1_2:9998693-9998712 | None:intergenic | 55.0% | |
| GGTGTCCAGATAGGCAAACC+CGG | + | chr1_2:9999209-9999228 | None:intergenic | 55.0% | |
| TGGGGCTGTATGCCAACTGG+GGG | - | chr1_2:9995253-9995272 | Msa0055140:intron | 60.0% | |
| TACACAGGGCCAGAGCAGGT+AGG | - | chr1_2:9998046-9998065 | Msa0055140:intron | 60.0% | |
| GATGACCATTCACCCCTCCC+AGG | - | chr1_2:9998678-9998697 | Msa0055140:intron | 60.0% | |
| ACCATTCACCCCTCCCAGGA+TGG | - | chr1_2:9998682-9998701 | Msa0055140:intron | 60.0% | |
| TCCATCCTGGGAGGGGTGAA+TGG | + | chr1_2:9998686-9998705 | None:intergenic | 60.0% | |
| TTCACCCCTCCCAGGATGGA+TGG | - | chr1_2:9998686-9998705 | Msa0055140:intron | 60.0% | |
| CAGGGCCAGAGCAGGTAGGT+AGG | - | chr1_2:9998050-9998069 | Msa0055140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9994228 | 9999235 | 9994228 | ID=Msa0055140;Name=Msa0055140 |
| chr1_2 | mRNA | 9994228 | 9999235 | 9994228 | ID=Msa0055140-mRNA-1;Parent=Msa0055140;Name=Msa0055140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81|1|1|1|1|1|3|120|375 |
| chr1_2 | exon | 9994228 | 9994874 | 9994228 | ID=Msa0055140-mRNA-1:exon:3787;Parent=Msa0055140-mRNA-1 |
| chr1_2 | exon | 9996527 | 9997027 | 9996527 | ID=Msa0055140-mRNA-1:exon:3786;Parent=Msa0055140-mRNA-1 |
| chr1_2 | exon | 9999055 | 9999235 | 9999055 | ID=Msa0055140-mRNA-1:exon:3785;Parent=Msa0055140-mRNA-1 |
| chr1_2 | five_prime_UTR | 9999155 | 9999235 | 9999155 | ID=Msa0055140-mRNA-1:five_prime_utr;Parent=Msa0055140-mRNA-1 |
| chr1_2 | CDS | 9999055 | 9999154 | 9999055 | ID=Msa0055140-mRNA-1:cds;Parent=Msa0055140-mRNA-1 |
| chr1_2 | CDS | 9996527 | 9997027 | 9996527 | ID=Msa0055140-mRNA-1:cds;Parent=Msa0055140-mRNA-1 |
| chr1_2 | CDS | 9994348 | 9994874 | 9994348 | ID=Msa0055140-mRNA-1:cds;Parent=Msa0055140-mRNA-1 |
| chr1_2 | three_prime_UTR | 9994228 | 9994347 | 9994228 | ID=Msa0055140-mRNA-1:three_prime_utr;Parent=Msa0055140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
