AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100860 MtrunA17_Chr1g0149051 98.391 373 6 0 3 375 4 376 0.0 756
Msa0100860 MtrunA17_Chr2g0332541 67.027 370 116 2 11 375 1 369 0.0 514
Msa0100860 MtrunA17_Chr3g0089391 56.325 332 143 2 36 367 32 361 8.40e-133 384
Msa0100860 MtrunA17_Chr4g0019571 52.676 355 164 4 15 367 12 364 3.63e-131 380
Msa0100860 MtrunA17_Chr4g0019581 52.113 355 166 3 15 367 81 433 5.42e-130 380
Msa0100860 MtrunA17_Chr4g0019601 52.394 355 165 3 15 367 12 364 1.59e-129 376
Msa0100860 MtrunA17_Chr2g0286051 46.797 359 185 3 13 369 11 365 1.52e-120 354
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100860 AT5G11420.1 74.722 360 90 1 16 375 8 366 0.0 574
Msa0100860 AT5G25460.1 74.444 360 88 2 19 375 11 369 0.0 568
Msa0100860 AT4G32460.2 74.510 357 90 1 19 375 10 365 0.0 561
Msa0100860 AT4G32460.1 74.510 357 90 1 19 375 10 365 0.0 561
Msa0100860 AT4G32460.4 76.687 326 75 1 50 375 1 325 0.0 530
Msa0100860 AT4G32460.3 76.687 326 75 1 50 375 1 325 0.0 530
Msa0100860 AT1G80240.1 63.793 348 125 1 27 374 21 367 2.12e-165 467
Msa0100860 AT3G08030.1 55.224 335 149 1 33 367 26 359 2.02e-132 384
Msa0100860 AT2G41810.1 50.543 368 173 3 11 370 1 367 1.27e-128 374
Msa0100860 AT2G41800.1 51.754 342 164 1 32 373 30 370 2.14e-127 371
Msa0100860 AT3G08030.2 55.660 318 140 1 50 367 1 317 3.29e-126 366
Msa0100860 AT1G29980.1 50.000 346 163 3 33 369 38 382 1.08e-120 355
Msa0100860 AT1G29980.2 49.855 345 163 3 34 369 3 346 2.86e-120 353
Msa0100860 AT2G34510.1 48.246 342 171 2 33 369 38 378 1.73e-116 344
Msa0100860 AT2G34510.2 48.630 292 145 1 83 369 1 292 1.75e-102 305
Msa0100860 AT5G14150.2 27.957 372 227 13 13 367 8 355 1.81e-36 136
Msa0100860 AT5G14150.1 27.957 372 227 13 13 367 8 355 1.81e-36 136

Find 109 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTCCGGGTTTGCCTATC+TGG 0.191893 1_3:+7317372 Msa0100860:three_prime_UTR
ATATCTGTTGCTCCTGATTT+TGG 0.209026 1_3:+7315186 Msa0100860:CDS
CCTTTACCTTTGGATGAATA+AGG 0.215858 1_3:-7317107 None:intergenic
TCTCGAAAATTGCATTCTTC+TGG 0.248365 1_3:-7317437 None:intergenic
TAGTATCAAAATATTACTTA+TGG 0.254293 1_3:+7317533 Msa0100860:three_prime_UTR
TTATTGATTCTGTTGCTCTT+AGG 0.255935 1_3:+7315343 Msa0100860:CDS
GATGATCTTTCTTCTCTTTG+TGG 0.265277 1_3:+7317218 Msa0100860:CDS
AAACCTGATATTTCCCATTC+TGG 0.280562 1_3:-7314979 None:intergenic
GGTTGGGATCCAATTGCTTA+TGG 0.285735 1_3:+7315243 Msa0100860:CDS
TGAATGGTCATCTTCTATAT+TGG 0.308808 1_3:-7316838 None:intergenic
CAAAGAATAAAAGTGATTAA+AGG 0.309159 1_3:+7315102 Msa0100860:CDS
AAGAAACTCTCATCGCCTTA+TGG 0.317677 1_3:-7317281 None:intergenic
TCAGTTTATATATATTTGTT+AGG 0.338328 1_3:+7317572 Msa0100860:three_prime_UTR
CCAAAACCATCAGAGCTAAA+AGG 0.348443 1_3:+7314925 Msa0100860:CDS
TGCTGGTAAAGACACAATTA+AGG 0.351879 1_3:+7317082 Msa0100860:CDS
TTTGAATCCACCTTTACCTT+TGG 0.354730 1_3:-7317117 None:intergenic
CACTTAAGTTTGTAGCTGTT+GGG 0.356396 1_3:+7317147 Msa0100860:CDS
TCTAAATATACCAACATCAT+TGG 0.356599 1_3:-7317762 None:intergenic
CACTTACTATTAGAAGCTTT+AGG 0.364523 1_3:-7315378 None:intergenic
GAATGGTCATCTTCTATATT+GGG 0.367423 1_3:-7316837 None:intergenic
TCAAGTTTGAGAAGAGGATA+TGG 0.377434 1_3:-7312553 None:intergenic
ATCACTCCATATGATGTGTT+AGG 0.384394 1_3:-7316807 None:intergenic
CTCACTGCATATGCACCTTC+TGG 0.384872 1_3:-7315054 None:intergenic
ATAGGCAAACCCGGACAAAA+TGG 0.392577 1_3:-7317368 None:intergenic
TCCATCTGGATTTATTCATC+TGG 0.401254 1_3:+7317333 Msa0100860:three_prime_UTR
GTCTCCCTCTCACTCATTGA+TGG 0.401514 1_3:+7312654 Msa0100860:CDS
ATACCAGAATGGGAAATATC+AGG 0.401676 1_3:+7314976 Msa0100860:CDS
GTGAAGCTGATGAAGATTAC+AGG 0.405642 1_3:-7317833 None:intergenic
TTAGTAGAATACATAAAATC+TGG 0.416766 1_3:+7315000 Msa0100860:CDS
GCTTTAAAACCATAAGCAAT+TGG 0.419076 1_3:-7315252 None:intergenic
AGTATCAAAATATTACTTAT+GGG 0.424325 1_3:+7317534 Msa0100860:three_prime_UTR
GCACTTAAGTTTGTAGCTGT+TGG 0.424811 1_3:+7317146 Msa0100860:CDS
CTTGTATACAATGTTTGTAT+AGG 0.425750 1_3:-7315216 None:intergenic
AACTTGACATCATCAATAAC+AGG 0.428308 1_3:-7317242 None:intergenic
TGAATATGATGTTGTTGAAA+TGG 0.433098 1_3:+7315275 Msa0100860:CDS
ATATTCCCTAACACATCATA+TGG 0.435096 1_3:+7316801 Msa0100860:CDS
TTCTTCTGGATTTACCAATT+CGG 0.437198 1_3:-7317423 None:intergenic
AAGGATTCTACCATCCATCC+TGG 0.450439 1_3:-7316867 None:intergenic
AAAATAATAGTTGATGCATA+TGG 0.452672 1_3:+7317881 Msa0100860:three_prime_UTR
TGTACAGGACTAGTGGCAAA+TGG 0.453001 1_3:+7314886 Msa0100860:intron
CTAAAAGGAACAGTGGTAAC+TGG 0.459222 1_3:+7314940 Msa0100860:CDS
CTTAGCGTGCGTAAACCATA+AGG 0.460821 1_3:+7317266 Msa0100860:CDS
TCCATCCTGGGAGGGGTGAA+TGG 0.464160 1_3:-7316854 None:intergenic
CAAGTTGCTAGAACAATTCC+AGG 0.464538 1_3:+7316984 Msa0100860:CDS
ATATATATAAACTGATCAAA+AGG 0.466999 1_3:-7317564 None:intergenic
TTGCAATTAGCAATGTTACC+AGG 0.469321 1_3:-7312493 None:intergenic
ATAGGAATAACACCAAAATC+AGG 0.482295 1_3:-7315198 None:intergenic
TAGCCTCACACCCATAAAAC+AGG 0.484221 1_3:-7317512 None:intergenic
AAGAAGGCGCGAGAATGAAA+TGG 0.491575 1_3:-7312519 None:intergenic
CATAAACAAGAACACATTCA+TGG 0.495034 1_3:-7312604 None:intergenic
TCTACTGCTCTTGTGCCTTG+TGG 0.498859 1_3:-7316930 None:intergenic
TTGAGAAGAGGATATGGTAT+GGG 0.502194 1_3:-7312547 None:intergenic
CCTTATTCATCCAAAGGTAA+AGG 0.506212 1_3:+7317107 Msa0100860:CDS
ATTGTATACAAGTAGTGGTT+GGG 0.508907 1_3:+7315227 Msa0100860:CDS
TCAATAAGAGGTCCACAAGC+AGG 0.514610 1_3:-7315327 None:intergenic
CAATGAGTGAGAGGGAGACA+TGG 0.518955 1_3:-7312650 None:intergenic
TCACTCCATATGATGTGTTA+GGG 0.524767 1_3:-7316806 None:intergenic
TTTGAGAAGAGGATATGGTA+TGG 0.530891 1_3:-7312548 None:intergenic
GTACAGGACTAGTGGCAAAT+GGG 0.532908 1_3:+7314887 Msa0100860:intron
CTTCATTCAAGTTTGAGAAG+AGG 0.533584 1_3:-7312559 None:intergenic
TCTACCATCCATCCTGGGAG+GGG 0.534305 1_3:-7316861 None:intergenic
AAGGTTCCTTATTCATCCAA+AGG 0.534346 1_3:+7317101 Msa0100860:CDS
TATGGTATGGGAAGGAAAGA+AGG 0.536527 1_3:-7312535 None:intergenic
TAGCTGTTGGGACAAGAACA+AGG 0.536783 1_3:+7317159 Msa0100860:CDS
CATTGTATACAAGTAGTGGT+TGG 0.537679 1_3:+7315226 Msa0100860:CDS
AGAGCAACAGAATCAATAAG+AGG 0.543262 1_3:-7315339 None:intergenic
TGAGAGGGAGACATGGAAAG+TGG 0.555486 1_3:-7312643 None:intergenic
GATGTGTTAGGGAATATATA+AGG 0.557138 1_3:-7316795 None:intergenic
TTACTATTAGAAGCTTTAGG+AGG 0.557212 1_3:-7315375 None:intergenic
GAAATGGTTATTCATAATCC+TGG 0.558117 1_3:+7315291 Msa0100860:CDS
CTGAGAAATGACCTGAGTCT+AGG 0.559607 1_3:-7316905 None:intergenic
ACCATTCACCCCTCCCAGGA+TGG 0.561579 1_3:+7316853 Msa0100860:CDS
ATCTGGATTTATTCATCTGG+CGG 0.562198 1_3:+7317336 Msa0100860:three_prime_UTR
TTCACCCCTCCCAGGATGGA+TGG 0.564481 1_3:+7316857 Msa0100860:CDS
TTCTACCATCCATCCTGGGA+GGG 0.568707 1_3:-7316862 None:intergenic
TGGTCATCTTCTATATTGGG+TGG 0.571757 1_3:-7316834 None:intergenic
CACAAGAGCAGTAGAACTAG+TGG 0.572866 1_3:+7316938 Msa0100860:CDS
TGCAATTAGCAATGTTACCA+GGG 0.574526 1_3:-7312492 None:intergenic
AGGATTCTACCATCCATCCT+GGG 0.576477 1_3:-7316866 None:intergenic
TATTCATCCAAAGGTAAAGG+TGG 0.579509 1_3:+7317110 Msa0100860:CDS
CAAACATTGTATACAAGTAG+TGG 0.588966 1_3:+7315222 Msa0100860:CDS
GTTAATAATCATCTTAAGAG+AGG 0.589674 1_3:-7317478 None:intergenic
GATGACCATTCACCCCTCCC+AGG 0.591765 1_3:+7316849 Msa0100860:CDS
GGTCATCTTCTATATTGGGT+GGG 0.591855 1_3:-7316833 None:intergenic
GCCAGATGAATAAATCCAGA+TGG 0.592612 1_3:-7317334 None:intergenic
AGAGCAGTAGAACTAGTGGC+AGG 0.596449 1_3:+7316942 Msa0100860:CDS
GAAGAGGATATGGTATGGGA+AGG 0.601005 1_3:-7312543 None:intergenic
GGTGCATATGCAGTGAGACT+AGG 0.601052 1_3:+7315060 Msa0100860:CDS
ACTTACCATCAATGAGTGAG+AGG 0.604105 1_3:-7312659 None:intergenic
GCAGGATCTTCTTCAACACC+AGG 0.604121 1_3:-7315309 None:intergenic
TGATATTTGTACAGGACTAG+TGG 0.607209 1_3:+7314879 Msa0100860:intron
GCAGTAAAATACCTAGACTC+AGG 0.607558 1_3:+7316894 Msa0100860:CDS
TCTGGATTTACCAATTCGGA+CGG 0.614686 1_3:-7317419 None:intergenic
GTTGAAGAAGATCCTGCTTG+TGG 0.629496 1_3:+7315315 Msa0100860:CDS
GGTGTCCAGATAGGCAAACC+CGG 0.634610 1_3:-7317377 None:intergenic
CTTACCATCAATGAGTGAGA+GGG 0.634839 1_3:-7312658 None:intergenic
AAAGGAACAGTGGTAACTGG+TGG 0.638704 1_3:+7314943 Msa0100860:CDS
ATCAGAGCTAAAAGGAACAG+TGG 0.653099 1_3:+7314933 Msa0100860:CDS
GAAAGTGGAACAGAAAAGCA+AGG 0.653658 1_3:-7312628 None:intergenic
GATGCAAGTAATTCATGTGA+AGG 0.655767 1_3:+7317038 Msa0100860:CDS
CATCACCAACTGAAAATGAG+AGG 0.658666 1_3:-7317019 None:intergenic
AACTGAAAATGAGAGGACAT+AGG 0.664170 1_3:-7317012 None:intergenic
GGTCATTTCTCAGTTCCACA+AGG 0.665974 1_3:+7316915 Msa0100860:CDS
ATGTTACTAGTTGTACCAGA+AGG 0.668517 1_3:+7315039 Msa0100860:CDS
GTGTGTGTATCCAATGATGT+TGG 0.688200 1_3:+7317752 Msa0100860:three_prime_UTR
ATTCTACCATCCATCCTGGG+AGG 0.697643 1_3:-7316863 None:intergenic
TAAAGGTGGATTCAAACGTG+CGG 0.707257 1_3:+7317124 Msa0100860:CDS
AGCTGTTGGGACAAGAACAA+GGG 0.708580 1_3:+7317160 Msa0100860:CDS
AAACAAGAACACATTCATGG+TGG 0.732804 1_3:-7312601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTAAAAATAGAAATAA+TGG + chr1_3:7313678-7313697 Msa0100860:intron 10.0%
!!! TAATTTGATTTTTTTTTGAA+AGG + chr1_3:7314464-7314483 Msa0100860:intron 10.0%
!!! TATGGTTTGTATTTTTATTT+TGG - chr1_3:7313282-7313301 None:intergenic 15.0%
!! TGAAATTATTGCAAAAATTA+CGG - chr1_3:7313583-7313602 None:intergenic 15.0%
!!! AAATAGAAATAATGGTTTTT+TGG + chr1_3:7313686-7313705 Msa0100860:intron 15.0%
!!! TACTACTTTTATGTAAAAAT+TGG - chr1_3:7313889-7313908 None:intergenic 15.0%
!! AAAAATACAAATAATTTGAC+TGG - chr1_3:7314010-7314029 None:intergenic 15.0%
!!! TTTTAGAAACTATAAAAAAG+TGG + chr1_3:7314237-7314256 Msa0100860:intron 15.0%
!! TATATAAAACAGTATATACA+TGG + chr1_3:7314281-7314300 Msa0100860:intron 15.0%
!!! GTATTATTCAATAACTTTTA+TGG + chr1_3:7315128-7315147 Msa0100860:CDS 15.0%
!! TAATACTCATAAATCTATTT+AGG + chr1_3:7315449-7315468 Msa0100860:intron 15.0%
!!! AGACATTATTCTATTTTTAA+GGG - chr1_3:7316478-7316497 None:intergenic 15.0%
!!! TAGACATTATTCTATTTTTA+AGG - chr1_3:7316479-7316498 None:intergenic 15.0%
!! TAGTATCAAAATATTACTTA+TGG + chr1_3:7317533-7317552 Msa0100860:three_prime_UTR 15.0%
!! AGTATCAAAATATTACTTAT+GGG + chr1_3:7317534-7317553 Msa0100860:three_prime_UTR 15.0%
!! ATATATATAAACTGATCAAA+AGG - chr1_3:7317567-7317586 None:intergenic 15.0%
!! TCAGTTTATATATATTTGTT+AGG + chr1_3:7317572-7317591 Msa0100860:three_prime_UTR 15.0%
!!! TATTTTTCTTTATTAGAACA+TGG - chr1_3:7317867-7317886 None:intergenic 15.0%
!!! GATTTTTGTCATTGTAATTT+TGG - chr1_3:7312972-7312991 None:intergenic 20.0%
!!! TTTTCTAGTTATATATCTAG+GGG - chr1_3:7313417-7313436 None:intergenic 20.0%
!!! GTTTTCTAGTTATATATCTA+GGG - chr1_3:7313418-7313437 None:intergenic 20.0%
!!! TGTTTTCTAGTTATATATCT+AGG - chr1_3:7313419-7313438 None:intergenic 20.0%
!! AAAAGTAGTAGAATTTGTAT+TGG + chr1_3:7313899-7313918 Msa0100860:intron 20.0%
!! AGATAATAATAATAATGCCT+TGG - chr1_3:7314155-7314174 None:intergenic 20.0%
!!! TAAATGAATATGTGTCTTTT+GGG + chr1_3:7314304-7314323 Msa0100860:intron 20.0%
!!! TTTTATAAGTTTTGGCAAAT+AGG + chr1_3:7314727-7314746 Msa0100860:intron 20.0%
!!! TTTATAAGTTTTGGCAAATA+GGG + chr1_3:7314728-7314747 Msa0100860:intron 20.0%
!! CAAATATCATACATCAATTT+AGG - chr1_3:7314868-7314887 None:intergenic 20.0%
!! TTAGTAGAATACATAAAATC+TGG + chr1_3:7315000-7315019 Msa0100860:CDS 20.0%
!! CAAAGAATAAAAGTGATTAA+AGG + chr1_3:7315102-7315121 Msa0100860:CDS 20.0%
!!! TTATTCAATAACTTTTATGG+TGG + chr1_3:7315131-7315150 Msa0100860:CDS 20.0%
!!! AAGTGTAGTACTTATTTTTT+TGG + chr1_3:7315500-7315519 Msa0100860:intron 20.0%
!!! CAAGTGTTTAAGTTAAAATA+AGG + chr1_3:7315547-7315566 Msa0100860:intron 20.0%
!! ACCTAAAGATAATTAATCTA+GGG - chr1_3:7315739-7315758 None:intergenic 20.0%
!! CCAATAAAACTTTAATAGTA+TGG - chr1_3:7316081-7316100 None:intergenic 20.0%
!!! CCATACTATTAAAGTTTTAT+TGG + chr1_3:7316078-7316097 Msa0100860:intron 20.0%
!!! GACATTATTCTATTTTTAAG+GGG - chr1_3:7316477-7316496 None:intergenic 20.0%
!! CAAAATTAAATGCATATCAA+TGG + chr1_3:7316501-7316520 Msa0100860:intron 20.0%
!!! ATACATGTAATTTTAGACTT+TGG + chr1_3:7316533-7316552 Msa0100860:intron 20.0%
!!! ATTTTTTAATATGTTCTCTG+TGG - chr1_3:7316757-7316776 None:intergenic 20.0%
!! ACAGAGAACATATTAAAAAA+TGG + chr1_3:7316756-7316775 Msa0100860:intron 20.0%
!!! TCAGATCTTTTATAAAAGAA+GGG - chr1_3:7317616-7317635 None:intergenic 20.0%
!!! AAAATAATAGTTGATGCATA+TGG + chr1_3:7317881-7317900 Msa0100860:three_prime_UTR 20.0%
! AAAATATATGTATGTGTGTG+TGG - chr1_3:7312702-7312721 None:intergenic 25.0%
! CTAAACATCTTAAACAATGT+TGG + chr1_3:7312734-7312753 Msa0100860:intron 25.0%
!!! AATGTTGGTTAGTATCATTT+TGG + chr1_3:7312749-7312768 Msa0100860:intron 25.0%
!! ATGTTCTTTGTTAGTCATTT+TGG + chr1_3:7312841-7312860 Msa0100860:intron 25.0%
!! TTTAAGATGTGTTTGTAGTT+TGG + chr1_3:7312939-7312958 Msa0100860:intron 25.0%
! CTAAATAGGTCAAGTAATAT+GGG - chr1_3:7313008-7313027 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG - chr1_3:7313009-7313028 None:intergenic 25.0%
! ACAGTGCAAATATTCTAAAT+AGG - chr1_3:7313022-7313041 None:intergenic 25.0%
!!! ACATTTTCAACTTTAGCTTA+TGG - chr1_3:7313300-7313319 None:intergenic 25.0%
! AAGCTAAAGTTGAAAATGTT+TGG + chr1_3:7313301-7313320 Msa0100860:intron 25.0%
! AGCTAAAGTTGAAAATGTTT+GGG + chr1_3:7313302-7313321 Msa0100860:intron 25.0%
! GAACAAATCTACAACAATAA+TGG - chr1_3:7313516-7313535 None:intergenic 25.0%
! TTGTTCTAGTACATAGTATT+TGG + chr1_3:7313530-7313549 Msa0100860:intron 25.0%
! TAACCATAGTATATAGTACT+AGG - chr1_3:7313629-7313648 None:intergenic 25.0%
! ATATTAGATTACATTTGACC+TGG + chr1_3:7313929-7313948 Msa0100860:intron 25.0%
! TATTAGATTACATTTGACCT+GGG + chr1_3:7313930-7313949 Msa0100860:intron 25.0%
! TTATGAGATCAAATACAATG+TGG + chr1_3:7314048-7314067 Msa0100860:intron 25.0%
!! TGGTAAAATTTTTGTAGAAG+TGG + chr1_3:7314197-7314216 Msa0100860:intron 25.0%
!! TAAAATTTTTGTAGAAGTGG+TGG + chr1_3:7314200-7314219 Msa0100860:intron 25.0%
!! GTAAATGAATATGTGTCTTT+TGG + chr1_3:7314303-7314322 Msa0100860:intron 25.0%
! TCTATAATATGATTGTCTGT+CGG + chr1_3:7314637-7314656 Msa0100860:intron 25.0%
!!! TTATAAGTTTTGGCAAATAG+GGG + chr1_3:7314729-7314748 Msa0100860:intron 25.0%
! TCCTTAATCTTGATTGAAAT+AGG - chr1_3:7314814-7314833 None:intergenic 25.0%
!! ATCATACATCAATTTAGGTT+AGG - chr1_3:7314863-7314882 None:intergenic 25.0%
! TTGATGTATGATATTTGTAC+AGG + chr1_3:7314871-7314890 Msa0100860:intron 25.0%
! AAAAAACTCAATACCAGAAT+GGG + chr1_3:7314966-7314985 Msa0100860:CDS 25.0%
! ATAAAATCTGGACAAAAACA+AGG + chr1_3:7315012-7315031 Msa0100860:CDS 25.0%
! CTTGTATACAATGTTTGTAT+AGG - chr1_3:7315219-7315238 None:intergenic 25.0%
! TGAATATGATGTTGTTGAAA+TGG + chr1_3:7315275-7315294 Msa0100860:CDS 25.0%
!! CTACATATTTGACTTTAAAG+TGG - chr1_3:7315618-7315637 None:intergenic 25.0%
!!! CACTTTAAAGTCAAATATGT+AGG + chr1_3:7315616-7315635 Msa0100860:intron 25.0%
! AAAGTCAAATATGTAGGTAT+TGG + chr1_3:7315622-7315641 Msa0100860:intron 25.0%
! TAAGTTAAGTATAGACCAAA+TGG - chr1_3:7315696-7315715 None:intergenic 25.0%
! TCCCTAGATTAATTATCTTT+AGG + chr1_3:7315735-7315754 Msa0100860:intron 25.0%
! GACCTAAAGATAATTAATCT+AGG - chr1_3:7315740-7315759 None:intergenic 25.0%
!! ATTTAACTAGCTTCCTTAAT+AGG - chr1_3:7315916-7315935 None:intergenic 25.0%
! ATATCAAACACTAAAACCAA+TGG + chr1_3:7315970-7315989 Msa0100860:intron 25.0%
! ATATTAATGTGTATAGACAC+AGG + chr1_3:7316002-7316021 Msa0100860:intron 25.0%
! TATTAATGTGTATAGACACA+GGG + chr1_3:7316003-7316022 Msa0100860:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr1_3:7316173-7316192 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr1_3:7316172-7316191 Msa0100860:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr1_3:7316185-7316204 Msa0100860:intron 25.0%
! ATACTAAATGTGCACTAATT+TGG + chr1_3:7316629-7316648 Msa0100860:intron 25.0%
! GAGAACATATTAAAAAATGG+TGG + chr1_3:7316759-7316778 Msa0100860:intron 25.0%
!!! TAGGTATTTTACTGCTTTTA+AGG - chr1_3:7316889-7316908 None:intergenic 25.0%
! AACGCGTTTAAAAATTCATA+GGG - chr1_3:7317313-7317332 None:intergenic 25.0%
! AAACGCGTTTAAAAATTCAT+AGG - chr1_3:7317314-7317333 None:intergenic 25.0%
!! GAAAAAAATACCATTTTGTC+CGG + chr1_3:7317358-7317377 Msa0100860:three_prime_UTR 25.0%
!! AAAAAAATACCATTTTGTCC+GGG + chr1_3:7317359-7317378 Msa0100860:three_prime_UTR 25.0%
!!! GGAAAAAATACAGTTTTTTC+TGG - chr1_3:7317401-7317420 None:intergenic 25.0%
! GTTAATAATCATCTTAAGAG+AGG - chr1_3:7317481-7317500 None:intergenic 25.0%
!! TTATTATTGAGCCTGTTTTA+TGG + chr1_3:7317501-7317520 Msa0100860:three_prime_UTR 25.0%
!! TATTATTGAGCCTGTTTTAT+GGG + chr1_3:7317502-7317521 Msa0100860:three_prime_UTR 25.0%
!! CTCAGATCTTTTATAAAAGA+AGG - chr1_3:7317617-7317636 None:intergenic 25.0%
!! TCTTTTATAAAAGATCTGAG+AGG + chr1_3:7317617-7317636 Msa0100860:three_prime_UTR 25.0%
! TCTAAATATACCAACATCAT+TGG - chr1_3:7317765-7317784 None:intergenic 25.0%
CATAAACAAGAACACATTCA+TGG - chr1_3:7312607-7312626 None:intergenic 30.0%
!! TTGGTTCTAAAATGTATGAG+AGG + chr1_3:7312768-7312787 Msa0100860:intron 30.0%
TCAACTAGGTCAAGTAATAT+TGG + chr1_3:7313201-7313220 Msa0100860:intron 30.0%
!! AGTACATGTGTTACTTTGTA+GGG + chr1_3:7313347-7313366 Msa0100860:intron 30.0%
TTATATATCTAGGGGAAACA+AGG - chr1_3:7313409-7313428 None:intergenic 30.0%
!! ATTGGTTTGTAGCTAGTTAA+AGG - chr1_3:7313871-7313890 None:intergenic 30.0%
! GTAGTAGAATTTGTATTGGT+TGG + chr1_3:7313903-7313922 Msa0100860:intron 30.0%
CCAATTATTGTCATTGGAAA+AGG - chr1_3:7314679-7314698 None:intergenic 30.0%
! CCTTTTCCAATGACAATAAT+TGG + chr1_3:7314676-7314695 Msa0100860:intron 30.0%
TGCAATCCAATTATTGTCAT+TGG - chr1_3:7314685-7314704 None:intergenic 30.0%
GCCTATTTCAATCAAGATTA+AGG + chr1_3:7314810-7314829 Msa0100860:intron 30.0%
GAAAAAACTCAATACCAGAA+TGG + chr1_3:7314965-7314984 Msa0100860:CDS 30.0%
ATAGGAATAACACCAAAATC+AGG - chr1_3:7315201-7315220 None:intergenic 30.0%
CAAACATTGTATACAAGTAG+TGG + chr1_3:7315222-7315241 Msa0100860:CDS 30.0%
ATTGTATACAAGTAGTGGTT+GGG + chr1_3:7315227-7315246 Msa0100860:CDS 30.0%
!! GCTTTAAAACCATAAGCAAT+TGG - chr1_3:7315255-7315274 None:intergenic 30.0%
GAAATGGTTATTCATAATCC+TGG + chr1_3:7315291-7315310 Msa0100860:CDS 30.0%
!! TTATTGATTCTGTTGCTCTT+AGG + chr1_3:7315343-7315362 Msa0100860:CDS 30.0%
!! TTACTATTAGAAGCTTTAGG+AGG - chr1_3:7315378-7315397 None:intergenic 30.0%
CACTTACTATTAGAAGCTTT+AGG - chr1_3:7315381-7315400 None:intergenic 30.0%
ATTGTTCACATGTGAAGATT+TGG - chr1_3:7315768-7315787 None:intergenic 30.0%
AGCTGGATTAATACCTATTA+AGG + chr1_3:7315900-7315919 Msa0100860:intron 30.0%
TTAATATACATCCACACCAT+TGG - chr1_3:7315989-7316008 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr1_3:7316147-7316166 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr1_3:7316198-7316217 Msa0100860:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr1_3:7316270-7316289 None:intergenic 30.0%
!! AAAAATGGTGGATTTGAAGA+AGG + chr1_3:7316771-7316790 Msa0100860:CDS 30.0%
GATGTGTTAGGGAATATATA+AGG - chr1_3:7316798-7316817 None:intergenic 30.0%
ATATTCCCTAACACATCATA+TGG + chr1_3:7316801-7316820 Msa0100860:CDS 30.0%
GAATGGTCATCTTCTATATT+GGG - chr1_3:7316840-7316859 None:intergenic 30.0%
TGAATGGTCATCTTCTATAT+TGG - chr1_3:7316841-7316860 None:intergenic 30.0%
AACTTGACATCATCAATAAC+AGG - chr1_3:7317245-7317264 None:intergenic 30.0%
CGTTTAAAAATTCATAGGGT+AGG - chr1_3:7317309-7317328 None:intergenic 30.0%
TTCTTCTGGATTTACCAATT+CGG - chr1_3:7317426-7317445 None:intergenic 30.0%
!! AGAATGCAATTTTCGAGAAA+TGG + chr1_3:7317442-7317461 Msa0100860:three_prime_UTR 30.0%
!! GAATGCAATTTTCGAGAAAT+GGG + chr1_3:7317443-7317462 Msa0100860:three_prime_UTR 30.0%
! TGCTATCATTCTTTTTCTTC+AGG - chr1_3:7317716-7317735 None:intergenic 30.0%
TTGCAATTAGCAATGTTACC+AGG - chr1_3:7312496-7312515 None:intergenic 35.0%
TTGAGAAGAGGATATGGTAT+GGG - chr1_3:7312550-7312569 None:intergenic 35.0%
TTTGAGAAGAGGATATGGTA+TGG - chr1_3:7312551-7312570 None:intergenic 35.0%
TCAAGTTTGAGAAGAGGATA+TGG - chr1_3:7312556-7312575 None:intergenic 35.0%
! CTTCATTCAAGTTTGAGAAG+AGG - chr1_3:7312562-7312581 None:intergenic 35.0%
AAACAAGAACACATTCATGG+TGG - chr1_3:7312604-7312623 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG - chr1_3:7313004-7313023 None:intergenic 35.0%
CTAGGTCAAGTAATATTGGA+CGG + chr1_3:7313205-7313224 Msa0100860:intron 35.0%
! AAGTAACACATGTACTGGTA+AGG - chr1_3:7313343-7313362 None:intergenic 35.0%
CTACAAAGTAACACATGTAC+TGG - chr1_3:7313348-7313367 None:intergenic 35.0%
!! CAGTACATGTGTTACTTTGT+AGG + chr1_3:7313346-7313365 Msa0100860:intron 35.0%
GCACCTAGTACTATATACTA+TGG + chr1_3:7313623-7313642 Msa0100860:intron 35.0%
CATACCCAAAGAATATGAGA+GGG - chr1_3:7313713-7313732 None:intergenic 35.0%
TCATACCCAAAGAATATGAG+AGG - chr1_3:7313714-7313733 None:intergenic 35.0%
TGATGGTCTGAAAAATCACA+TGG + chr1_3:7313749-7313768 Msa0100860:intron 35.0%
GATGGTCTGAAAAATCACAT+GGG + chr1_3:7313750-7313769 Msa0100860:intron 35.0%
ATGGTCTGAAAAATCACATG+GGG + chr1_3:7313751-7313770 Msa0100860:intron 35.0%
ACTTATCACAAATGTCTCAG+AGG + chr1_3:7313837-7313856 Msa0100860:intron 35.0%
!! GAATGAAAGATAGTGGAAAG+TGG - chr1_3:7313958-7313977 None:intergenic 35.0%
GGACAAAGAATGAAAGATAG+TGG - chr1_3:7313965-7313984 None:intergenic 35.0%
CTAGACATGATCTAATACCA+AGG + chr1_3:7314135-7314154 Msa0100860:intron 35.0%
! ATAGGTTTAGCTTAGCTTGA+TGG + chr1_3:7314177-7314196 Msa0100860:intron 35.0%
!! TGAATATGTGTCTTTTGGGT+AGG + chr1_3:7314308-7314327 Msa0100860:intron 35.0%
!! TATGATTGTCTGTCGGTTTA+TGG + chr1_3:7314644-7314663 Msa0100860:intron 35.0%
TGATATTTGTACAGGACTAG+TGG + chr1_3:7314879-7314898 Msa0100860:intron 35.0%
ATACCAGAATGGGAAATATC+AGG + chr1_3:7314976-7314995 Msa0100860:CDS 35.0%
AAACCTGATATTTCCCATTC+TGG - chr1_3:7314982-7315001 None:intergenic 35.0%
ATGTTACTAGTTGTACCAGA+AGG + chr1_3:7315039-7315058 Msa0100860:CDS 35.0%
! ATATCTGTTGCTCCTGATTT+TGG + chr1_3:7315186-7315205 Msa0100860:CDS 35.0%
CATTGTATACAAGTAGTGGT+TGG + chr1_3:7315226-7315245 Msa0100860:CDS 35.0%
AGAGCAACAGAATCAATAAG+AGG - chr1_3:7315342-7315361 None:intergenic 35.0%
TTGTAGATGCAAGAACCATT+TGG + chr1_3:7315678-7315697 Msa0100860:intron 35.0%
AAACACTAAAACCAATGGTG+TGG + chr1_3:7315975-7315994 Msa0100860:intron 35.0%
GCTACTAGTACATATGCATA+TGG + chr1_3:7316102-7316121 Msa0100860:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr1_3:7316265-7316284 Msa0100860:intron 35.0%
TCATTGCATTGTGTGTCATA+CGG + chr1_3:7316380-7316399 Msa0100860:intron 35.0%
ACTTGCCTTTAGCAAAGAAA+AGG + chr1_3:7316430-7316449 Msa0100860:intron 35.0%
CTTGCCTTTAGCAAAGAAAA+GGG + chr1_3:7316431-7316450 Msa0100860:intron 35.0%
! AGATCCCTTTTCTTTGCTAA+AGG - chr1_3:7316438-7316457 None:intergenic 35.0%
GTCATACATGAACTAAATCG+AGG + chr1_3:7316583-7316602 Msa0100860:intron 35.0%
CAACATCATTTGCACTATGT+TGG + chr1_3:7316664-7316683 Msa0100860:intron 35.0%
TCACTCCATATGATGTGTTA+GGG - chr1_3:7316809-7316828 None:intergenic 35.0%
ATCACTCCATATGATGTGTT+AGG - chr1_3:7316810-7316829 None:intergenic 35.0%
AACTGAAAATGAGAGGACAT+AGG - chr1_3:7317015-7317034 None:intergenic 35.0%
! TATGTCCTCTCATTTTCAGT+TGG + chr1_3:7317014-7317033 Msa0100860:CDS 35.0%
GATGCAAGTAATTCATGTGA+AGG + chr1_3:7317038-7317057 Msa0100860:CDS 35.0%
! ATGATTGTTGAAGCTTTTGC+TGG + chr1_3:7317065-7317084 Msa0100860:CDS 35.0%
TGCTGGTAAAGACACAATTA+AGG + chr1_3:7317082-7317101 Msa0100860:CDS 35.0%
AAGGTTCCTTATTCATCCAA+AGG + chr1_3:7317101-7317120 Msa0100860:CDS 35.0%
CCTTTACCTTTGGATGAATA+AGG - chr1_3:7317110-7317129 None:intergenic 35.0%
CCTTATTCATCCAAAGGTAA+AGG + chr1_3:7317107-7317126 Msa0100860:CDS 35.0%
TATTCATCCAAAGGTAAAGG+TGG + chr1_3:7317110-7317129 Msa0100860:CDS 35.0%
TTTGAATCCACCTTTACCTT+TGG - chr1_3:7317120-7317139 None:intergenic 35.0%
CACTTAAGTTTGTAGCTGTT+GGG + chr1_3:7317147-7317166 Msa0100860:CDS 35.0%
GATGATCTTTCTTCTCTTTG+TGG + chr1_3:7317218-7317237 Msa0100860:CDS 35.0%
! TTTTTAAACGCGTTTCCATC+TGG + chr1_3:7317319-7317338 Msa0100860:three_prime_UTR 35.0%
TCCATCTGGATTTATTCATC+TGG + chr1_3:7317333-7317352 Msa0100860:three_prime_UTR 35.0%
ATCTGGATTTATTCATCTGG+CGG + chr1_3:7317336-7317355 Msa0100860:three_prime_UTR 35.0%
!!! TGTATTTTTTCCGTCCGAAT+TGG + chr1_3:7317409-7317428 Msa0100860:three_prime_UTR 35.0%
TCTCGAAAATTGCATTCTTC+TGG - chr1_3:7317440-7317459 None:intergenic 35.0%
TATGGTATGGGAAGGAAAGA+AGG - chr1_3:7312538-7312557 None:intergenic 40.0%
GAAAGTGGAACAGAAAAGCA+AGG - chr1_3:7312631-7312650 None:intergenic 40.0%
CTTACCATCAATGAGTGAGA+GGG - chr1_3:7312661-7312680 None:intergenic 40.0%
ACTTACCATCAATGAGTGAG+AGG - chr1_3:7312662-7312681 None:intergenic 40.0%
!! TGTGTTACTTTGTAGGGACT+TGG + chr1_3:7313353-7313372 Msa0100860:intron 40.0%
TTGGACCCTCTCATATTCTT+TGG + chr1_3:7313705-7313724 Msa0100860:intron 40.0%
TGGACCCTCTCATATTCTTT+GGG + chr1_3:7313706-7313725 Msa0100860:intron 40.0%
ATTTGTGATAAGTCACGTGG+TGG - chr1_3:7313830-7313849 None:intergenic 40.0%
GACATTTGTGATAAGTCACG+TGG - chr1_3:7313833-7313852 None:intergenic 40.0%
CCACTGTAGGAAATCAAATC+AGG - chr1_3:7313986-7314005 None:intergenic 40.0%
! CCTGATTTGATTTCCTACAG+TGG + chr1_3:7313983-7314002 Msa0100860:intron 40.0%
TAATTTGACTGGACCACTGT+AGG - chr1_3:7313999-7314018 None:intergenic 40.0%
! GCAAATGGGAATTTTGAGCT+TGG + chr1_3:7314901-7314920 Msa0100860:CDS 40.0%
!!! CCTTTTAGCTCTGATGGTTT+TGG - chr1_3:7314928-7314947 None:intergenic 40.0%
CCAAAACCATCAGAGCTAAA+AGG + chr1_3:7314925-7314944 Msa0100860:CDS 40.0%
!!! ACTGTTCCTTTTAGCTCTGA+TGG - chr1_3:7314934-7314953 None:intergenic 40.0%
ATCAGAGCTAAAAGGAACAG+TGG + chr1_3:7314933-7314952 Msa0100860:CDS 40.0%
CTAAAAGGAACAGTGGTAAC+TGG + chr1_3:7314940-7314959 Msa0100860:CDS 40.0%
TAATCTAGGGATAGTGCGTT+TGG - chr1_3:7315726-7315745 None:intergenic 40.0%
CACATGTGAAGATTTGGCAA+TGG - chr1_3:7315762-7315781 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr1_3:7316208-7316227 Msa0100860:intron 40.0%
GTGTCATACGGAAATCAGTT+AGG + chr1_3:7316392-7316411 Msa0100860:intron 40.0%
GGTCATCTTCTATATTGGGT+GGG - chr1_3:7316836-7316855 None:intergenic 40.0%
TGGTCATCTTCTATATTGGG+TGG - chr1_3:7316837-7316856 None:intergenic 40.0%
GCAGTAAAATACCTAGACTC+AGG + chr1_3:7316894-7316913 Msa0100860:CDS 40.0%
CAAGTTGCTAGAACAATTCC+AGG + chr1_3:7316984-7317003 Msa0100860:CDS 40.0%
CATCACCAACTGAAAATGAG+AGG - chr1_3:7317022-7317041 None:intergenic 40.0%
! TAAAGGTGGATTCAAACGTG+CGG + chr1_3:7317124-7317143 Msa0100860:CDS 40.0%
GCACTTAAGTTTGTAGCTGT+TGG + chr1_3:7317146-7317165 Msa0100860:CDS 40.0%
AAGAAACTCTCATCGCCTTA+TGG - chr1_3:7317284-7317303 None:intergenic 40.0%
GCCAGATGAATAAATCCAGA+TGG - chr1_3:7317337-7317356 None:intergenic 40.0%
!!! GTTTTTTCTGGTGTCCAGAT+AGG - chr1_3:7317389-7317408 None:intergenic 40.0%
TCTGGATTTACCAATTCGGA+CGG - chr1_3:7317422-7317441 None:intergenic 40.0%
!! TGCAATTTTCGAGAAATGGG+TGG + chr1_3:7317446-7317465 Msa0100860:three_prime_UTR 40.0%
!! GCAATTTTCGAGAAATGGGT+GGG + chr1_3:7317447-7317466 Msa0100860:three_prime_UTR 40.0%
!! CAATTTTCGAGAAATGGGTG+GGG + chr1_3:7317448-7317467 Msa0100860:three_prime_UTR 40.0%
GTGTGTGTATCCAATGATGT+TGG + chr1_3:7317752-7317771 Msa0100860:three_prime_UTR 40.0%
GTGAAGCTGATGAAGATTAC+AGG - chr1_3:7317836-7317855 None:intergenic 40.0%
! AAGAAGGCGCGAGAATGAAA+TGG - chr1_3:7312522-7312541 None:intergenic 45.0%
GAAGAGGATATGGTATGGGA+AGG - chr1_3:7312546-7312565 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr1_3:7313000-7313019 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG + chr1_3:7313187-7313206 Msa0100860:intron 45.0%
GGTCAAGTAATATTGGACGG+AGG + chr1_3:7313208-7313227 Msa0100860:intron 45.0%
! GAAAAGAGCACGCATGATGA+TGG + chr1_3:7313732-7313751 Msa0100860:intron 45.0%
! TGTACAGGACTAGTGGCAAA+TGG + chr1_3:7314886-7314905 Msa0100860:intron 45.0%
! GTACAGGACTAGTGGCAAAT+GGG + chr1_3:7314887-7314906 Msa0100860:intron 45.0%
AAAGGAACAGTGGTAACTGG+TGG + chr1_3:7314943-7314962 Msa0100860:CDS 45.0%
GGTTGGGATCCAATTGCTTA+TGG + chr1_3:7315243-7315262 Msa0100860:CDS 45.0%
GTTGAAGAAGATCCTGCTTG+TGG + chr1_3:7315315-7315334 Msa0100860:CDS 45.0%
TCAATAAGAGGTCCACAAGC+AGG - chr1_3:7315330-7315349 None:intergenic 45.0%
AGCACACAATAGAACACAGC+TGG + chr1_3:7315883-7315902 Msa0100860:intron 45.0%
AACATCCTACCTACCTTCTC+TGG - chr1_3:7316029-7316048 None:intergenic 45.0%
CACACACTATGTGCTCAAGT+TGG - chr1_3:7316561-7316580 None:intergenic 45.0%
AGGATTCTACCATCCATCCT+GGG - chr1_3:7316869-7316888 None:intergenic 45.0%
AAGGATTCTACCATCCATCC+TGG - chr1_3:7316870-7316889 None:intergenic 45.0%
CTGAGAAATGACCTGAGTCT+AGG - chr1_3:7316908-7316927 None:intergenic 45.0%
GGTCATTTCTCAGTTCCACA+AGG + chr1_3:7316915-7316934 Msa0100860:CDS 45.0%
CACAAGAGCAGTAGAACTAG+TGG + chr1_3:7316938-7316957 Msa0100860:CDS 45.0%
TAGCTGTTGGGACAAGAACA+AGG + chr1_3:7317159-7317178 Msa0100860:CDS 45.0%
AGCTGTTGGGACAAGAACAA+GGG + chr1_3:7317160-7317179 Msa0100860:CDS 45.0%
CTTAGCGTGCGTAAACCATA+AGG + chr1_3:7317266-7317285 Msa0100860:CDS 45.0%
ATAGGCAAACCCGGACAAAA+TGG - chr1_3:7317371-7317390 None:intergenic 45.0%
TAGCCTCACACCCATAAAAC+AGG - chr1_3:7317515-7317534 None:intergenic 45.0%
!! ATTATTATTATTATCTATAT+AGG + chr1_3:7314159-7314178 Msa0100860:intron 5.0%
!!! ATTTTTATTTTTATAAGTTT+TGG + chr1_3:7314719-7314738 Msa0100860:intron 5.0%
TGAGAGGGAGACATGGAAAG+TGG - chr1_3:7312646-7312665 None:intergenic 50.0%
CAATGAGTGAGAGGGAGACA+TGG - chr1_3:7312653-7312672 None:intergenic 50.0%
GTCTCCCTCTCACTCATTGA+TGG + chr1_3:7312654-7312673 Msa0100860:CDS 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr1_3:7313001-7313020 None:intergenic 50.0%
CTCACTGCATATGCACCTTC+TGG - chr1_3:7315057-7315076 None:intergenic 50.0%
GGTGCATATGCAGTGAGACT+AGG + chr1_3:7315060-7315079 Msa0100860:CDS 50.0%
GCAGGATCTTCTTCAACACC+AGG - chr1_3:7315312-7315331 None:intergenic 50.0%
TATAGACACAGGGCCAGAGA+AGG + chr1_3:7316013-7316032 Msa0100860:intron 50.0%
TTCTACCATCCATCCTGGGA+GGG - chr1_3:7316865-7316884 None:intergenic 50.0%
ATTCTACCATCCATCCTGGG+AGG - chr1_3:7316866-7316885 None:intergenic 50.0%
TCTACTGCTCTTGTGCCTTG+TGG - chr1_3:7316933-7316952 None:intergenic 50.0%
AGAGCAGTAGAACTAGTGGC+AGG + chr1_3:7316942-7316961 Msa0100860:CDS 50.0%
! GAGAGGACATAGGTTTTGCC+TGG - chr1_3:7317005-7317024 None:intergenic 50.0%
TTTGTCCGGGTTTGCCTATC+TGG + chr1_3:7317372-7317391 Msa0100860:three_prime_UTR 50.0%
! GAGCCTGTTTTATGGGTGTG+AGG + chr1_3:7317509-7317528 Msa0100860:three_prime_UTR 50.0%
ACATGGGGCTGTATGCCAAC+TGG + chr1_3:7313766-7313785 Msa0100860:intron 55.0%
CATGGGGCTGTATGCCAACT+GGG + chr1_3:7313767-7313786 Msa0100860:intron 55.0%
ATGGGGCTGTATGCCAACTG+GGG + chr1_3:7313768-7313787 Msa0100860:intron 55.0%
CACTCATCAACTCCCCCAGT+TGG - chr1_3:7313784-7313803 None:intergenic 55.0%
!! GATAGTGGAAAGTGGAGCCC+AGG - chr1_3:7313950-7313969 None:intergenic 55.0%
TCTACCATCCATCCTGGGAG+GGG - chr1_3:7316864-7316883 None:intergenic 55.0%
GGTGTCCAGATAGGCAAACC+CGG - chr1_3:7317380-7317399 None:intergenic 55.0%
TGGGGCTGTATGCCAACTGG+GGG + chr1_3:7313769-7313788 Msa0100860:intron 60.0%
GACACAGGGCCAGAGAAGGT+AGG + chr1_3:7316017-7316036 Msa0100860:intron 60.0%
CAGGGCCAGAGAAGGTAGGT+AGG + chr1_3:7316021-7316040 Msa0100860:intron 60.0%
GATGACCATTCACCCCTCCC+AGG + chr1_3:7316849-7316868 Msa0100860:CDS 60.0%
ACCATTCACCCCTCCCAGGA+TGG + chr1_3:7316853-7316872 Msa0100860:CDS 60.0%
TCCATCCTGGGAGGGGTGAA+TGG - chr1_3:7316857-7316876 None:intergenic 60.0%
TTCACCCCTCCCAGGATGGA+TGG + chr1_3:7316857-7316876 Msa0100860:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7312493 7317928 7312493 ID=Msa0100860;Name=Msa0100860
chr1_3 mRNA 7312493 7317928 7312493 ID=Msa0100860-mRNA-1;Parent=Msa0100860;Name=Msa0100860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83|1|1|1|1|1|3|642|375
chr1_3 exon 7312493 7312675 7312493 ID=Msa0100860-mRNA-1:exon:2869;Parent=Msa0100860-mRNA-1
chr1_3 exon 7314893 7315393 7314893 ID=Msa0100860-mRNA-1:exon:2870;Parent=Msa0100860-mRNA-1
chr1_3 exon 7316760 7317928 7316760 ID=Msa0100860-mRNA-1:exon:2871;Parent=Msa0100860-mRNA-1
chr1_3 five_prime_UTR 7312493 7312575 7312493 ID=Msa0100860-mRNA-1:five_prime_utr;Parent=Msa0100860-mRNA-1
chr1_3 CDS 7312576 7312675 7312576 ID=Msa0100860-mRNA-1:cds;Parent=Msa0100860-mRNA-1
chr1_3 CDS 7314893 7315393 7314893 ID=Msa0100860-mRNA-1:cds;Parent=Msa0100860-mRNA-1
chr1_3 CDS 7316760 7317286 7316760 ID=Msa0100860-mRNA-1:cds;Parent=Msa0100860-mRNA-1
chr1_3 three_prime_UTR 7317287 7317928 7317287 ID=Msa0100860-mRNA-1:three_prime_utr;Parent=Msa0100860-mRNA-1
Gene Sequence

>Msa0100860

ATGAAGAGTAACTTTCATAGCTCAACCACCATGAATGTGTTCTTGTTTATGTCCTTGCTTTTCTGTTCCACTTTCCATGTCTCCCTCTCACTCATTGATGGACTAGTGGCAAATGGGAATTTTGAGCTTGGTCCAAAACCATCAGAGCTAAAAGGAACAGTGGTAACTGGTGGAAAAAACTCAATACCAGAATGGGAAATATCAGGTTTAGTAGAATACATAAAATCTGGACAAAAACAAGGTGACATGTTACTAGTTGTACCAGAAGGTGCATATGCAGTGAGACTAGGAAATGAAGCATCAATAAAACAAAGAATAAAAGTGATTAAAGGAATGTATTATTCAATAACTTTTATGGTGGCACGTACATGTGCACAAGAAGAAAGAATTAATATATCTGTTGCTCCTGATTTTGGTGTTATTCCTATACAAACATTGTATACAAGTAGTGGTTGGGATCCAATTGCTTATGGTTTTAAAGCTGAATATGATGTTGTTGAAATGGTTATTCATAATCCTGGTGTTGAAGAAGATCCTGCTTGTGGACCTCTTATTGATTCTGTTGCTCTTAGGACTCTATATCCTCCTAAAGCTTCTAATAAGAACATATTAAAAAATGGTGGATTTGAAGAAGGACCTTATATATTCCCTAACACATCATATGGAGTGATCATCCCACCCAATATAGAAGATGACCATTCACCCCTCCCAGGATGGATGGTAGAATCCTTAAAAGCAGTAAAATACCTAGACTCAGGTCATTTCTCAGTTCCACAAGGCACAAGAGCAGTAGAACTAGTGGCAGGAAAAGAGAGTGCAATAGCACAAGTTGCTAGAACAATTCCAGGCAAAACCTATGTCCTCTCATTTTCAGTTGGTGATGCAAGTAATTCATGTGAAGGTTCAATGATTGTTGAAGCTTTTGCTGGTAAAGACACAATTAAGGTTCCTTATTCATCCAAAGGTAAAGGTGGATTCAAACGTGCGGCACTTAAGTTTGTAGCTGTTGGGACAAGAACAAGGGTGATGTTTCTTAGTACTTTTTATAGTATGAGAAGTGATGATCTTTCTTCTCTTTGTGGACCTGTTATTGATGATGTCAAGTTGCTTAGCGTGCGTAAACCATAA
Protein sequence

>Msa0100860

MKSNFHSSTTMNVFLFMSLLFCSTFHVSLSLIDGLVANGNFELGPKPSELKGTVVTGGKNSIPEWEISGLVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITFMVARTCAQEERINISVAPDFGVIPIQTLYTSSGWDPIAYGFKAEYDVVEMVIHNPGVEEDPACGPLIDSVALRTLYPPKASNKNILKNGGFEEGPYIFPNTSYGVIIPPNIEDDHSPLPGWMVESLKAVKYLDSGHFSVPQGTRAVELVAGKESAIAQVARTIPGKTYVLSFSVGDASNSCEGSMIVEAFAGKDTIKVPYSSKGKGGFKRAALKFVAVGTRTRVMFLSTFYSMRSDDLSSLCGPVIDDVKLLSVRKP*