AlfalfaGEDB | Msa0006870

M. sativa cultivar zhongmu-4 / Msa0006870

KEGG: -
GO: -
PFAM: PF04862.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006870	Msa0017120	0.800244	1.578198e-48	-8.615850e-47
Msa0006870	Msa0043160	0.800398	1.468445e-48	-8.615850e-47
Msa0006870	Msa0043680	0.809814	1.570634e-50	-8.615850e-47
Msa0006870	Msa0055140	0.845775	3.291116e-59	-8.615850e-47
Msa0006870	Msa0065390	0.815024	1.142549e-51	-8.615850e-47
Msa0006870	Msa0077910	0.820588	6.336789e-53	-8.615850e-47
Msa0006870	Msa0092180	0.810226	1.280497e-50	-8.615850e-47
Msa0006870	Msa0092660	0.804136	2.497314e-49	-8.615850e-47
Msa0006870	Msa0092730	0.804887	1.740530e-49	-8.615850e-47
Msa0006870	Msa0100570	0.992427	3.180977e-193	-8.615850e-47
Msa0006870	Msa0100860	0.991762	2.116829e-189	-8.615850e-47
Msa0006870	Msa0110710	0.820710	5.940939e-53	-8.615850e-47
Msa0006870	Msa0125800	0.823543	1.309291e-53	-8.615850e-47
Msa0006870	Msa0135980	0.804981	1.664104e-49	-8.615850e-47
Msa0006870	Msa0137030	0.803217	3.873265e-49	-8.615850e-47
Msa0006870	Msa0137600	0.805866	1.085400e-49	-8.615850e-47
Msa0006870	Msa0139900	0.823287	1.502237e-53	-8.615850e-47
Msa0006870	Msa0150210	0.805792	1.125129e-49	-8.615850e-47
Msa0006870	Msa0157020	0.802789	4.748383e-49	-8.615850e-47
Msa0006870	Msa0157350	0.807433	5.067213e-50	-8.615850e-47
Msa0006870	Msa0170440	0.821005	5.081725e-53	-8.615850e-47
Msa0006870	Msa0177280	0.809869	1.529058e-50	-8.615850e-47
Msa0006870	Msa0247310	0.804694	1.910536e-49	-8.615850e-47
Msa0006870	Msa0285740	0.800899	1.160542e-48	-8.615850e-47
Msa0006870	Msa0351510	0.825143	5.504799e-54	-8.615850e-47
Msa0006870	Msa0358230	0.806753	7.057561e-50	-8.615850e-47
Msa0006870	Msa0379110	0.820509	6.608016e-53	-8.615850e-47
Msa0006870	Msa0379450	0.816390	5.668284e-52	-8.615850e-47
Msa0006870	Msa0380060	0.834341	3.170273e-56	-8.615850e-47
Msa0006870	Msa0382560	0.820510	6.602115e-53	-8.615850e-47
Msa0006870	Msa0398590	0.822181	2.718219e-53	-8.615850e-47
Msa0006870	Msa0415050	0.806579	7.679604e-50	-8.615850e-47
Msa0006870	Msa0417630	0.806126	9.569863e-50	-8.615850e-47
Msa0006870	Msa0429270	0.821359	4.211684e-53	-8.615850e-47
Msa0006870	Msa0439780	0.807123	5.893522e-50	-8.615850e-47
Msa0006870	Msa0448160	0.804487	2.110208e-49	-8.615850e-47
Msa0006870	Msa0457870	0.816153	6.405659e-52	-8.615850e-47
Msa0006870	Msa0510230	0.816448	5.501873e-52	-8.615850e-47
Msa0006870	Msa0519200	0.832853	7.457013e-56	-8.615850e-47
Msa0006870	Msa0524020	0.800047	1.730939e-48	-8.615850e-47
Msa0006870	Msa0526130	0.828215	1.017734e-54	-8.615850e-47
Msa0006870	Msa0532840	0.805782	1.130661e-49	-8.615850e-47
Msa0006870	Msa0537270	0.822463	2.337172e-53	-8.615850e-47
Msa0006870	Msa0538570	0.841110	5.796908e-58	-8.615850e-47
Msa0006870	Msa0593710	0.822225	2.654654e-53	-8.615850e-47
Msa0006870	Msa0594390	0.838801	2.317506e-57	-8.615850e-47
Msa0006870	Msa0599690	0.808602	2.857730e-50	-8.615850e-47
Msa0006870	Msa0600390	0.811013	8.654477e-51	-8.615850e-47
Msa0006870	Msa0601110	0.813514	2.463470e-51	-8.615850e-47
Msa0006870	Msa0601120	0.814647	1.385082e-51	-8.615850e-47
Msa0006870	Msa0607480	0.813880	2.045922e-51	-8.615850e-47
Msa0006870	Msa0620130	0.811033	8.570983e-51	-8.615850e-47
Msa0006870	Msa0620270	0.800484	1.410563e-48	-8.615850e-47
Msa0006870	Msa0623760	0.800625	1.320023e-48	-8.615850e-47
Msa0006870	Msa0633750	0.819928	8.975681e-53	-8.615850e-47
Msa0006870	Msa0634270	0.802408	5.690182e-49	-8.615850e-47
Msa0006870	Msa0640880	0.820056	8.389087e-53	-8.615850e-47
Msa0006870	Msa0646710	0.803068	4.159323e-49	-8.615850e-47
Msa0006870	Msa0647750	0.810209	1.291755e-50	-8.615850e-47
Msa0006870	Msa0659920	0.838026	3.671963e-57	-8.615850e-47
Msa0006870	Msa0683650	0.808691	2.734993e-50	-8.615850e-47
Msa0006870	Msa0686240	0.830798	2.397715e-55	-8.615850e-47
Msa0006870	Msa0690500	0.812757	3.611204e-51	-8.615850e-47
Msa0006870	Msa0703720	0.819820	9.499094e-53	-8.615850e-47
Msa0006870	Msa0703760	0.821063	4.927313e-53	-8.615850e-47
Msa0006870	Msa0706580	0.830985	2.157568e-55	-8.615850e-47
Msa0006870	Msa0722940	0.837052	6.526986e-57	-8.615850e-47
Msa0006870	Msa0723150	0.841067	5.948999e-58	-8.615850e-47
Msa0006870	Msa0732100	0.806654	7.406432e-50	-8.615850e-47
Msa0006870	Msa0733110	0.801827	7.493156e-49	-8.615850e-47
Msa0006870	Msa0738970	0.817507	3.181433e-52	-8.615850e-47
Msa0006870	Msa0761790	0.827012	1.979120e-54	-8.615850e-47
Msa0006870	Msa0773080	0.810455	1.142700e-50	-8.615850e-47
Msa0006870	Msa0803130	0.802713	4.923811e-49	-8.615850e-47
Msa0006870	Msa0804110	0.863177	2.999027e-64	-8.615850e-47
Msa0006870	Msa0810370	0.816790	4.611556e-52	-8.615850e-47
Msa0006870	Msa0819470	0.821843	3.254984e-53	-8.615850e-47
Msa0006870	Msa0842220	0.828027	1.129486e-54	-8.615850e-47
Msa0006870	Msa0843290	0.826295	2.934145e-54	-8.615850e-47
Msa0006870	Msa0859390	0.818628	1.774801e-52	-8.615850e-47
Msa0006870	Msa0863440	0.804935	1.701100e-49	-8.615850e-47
Msa0006870	Msa0931480	0.840122	1.051285e-57	-8.615850e-47
Msa0006870	Msa0972730	0.813312	2.727417e-51	-8.615850e-47
Msa0006870	Msa1004500	0.806945	6.428206e-50	-8.615850e-47
Msa0006870	Msa1004520	0.802693	4.969625e-49	-8.615850e-47
Msa0006870	Msa1009790	0.814234	1.708949e-51	-8.615850e-47
Msa0006870	Msa1027790	0.839116	1.920716e-57	-8.615850e-47
Msa0006870	Msa1033120	0.805377	1.374515e-49	-8.615850e-47
Msa0006870	Msa1040010	0.800961	1.127215e-48	-8.615850e-47
Msa0006870	Msa1045440	0.807695	4.458412e-50	-8.615850e-47
Msa0006870	Msa1046870	0.805941	1.046715e-49	-8.615850e-47
Msa0006870	Msa1061180	0.806979	6.323239e-50	-8.615850e-47
Msa0006870	Msa1067430	0.809001	2.347817e-50	-8.615850e-47
Msa0006870	Msa1072080	0.813131	2.990026e-51	-8.615850e-47
Msa0006870	Msa1084150	0.826722	2.321457e-54	-8.615850e-47
Msa0006870	Msa1106580	0.844649	6.635268e-59	-8.615850e-47
Msa0006870	Msa1112610	0.832648	8.383290e-56	-8.615850e-47
Msa0006870	Msa1123630	0.802583	5.237228e-49	-8.615850e-47
Msa0006870	Msa1127510	0.823893	1.083931e-53	-8.615850e-47
Msa0006870	Msa1148780	0.806001	1.016692e-49	-8.615850e-47
Msa0006870	Msa1149960	0.814383	1.584770e-51	-8.615850e-47
Msa0006870	Msa1175750	0.834113	3.616082e-56	-8.615850e-47
Msa0006870	Msa1180410	0.844970	5.434290e-59	-8.615850e-47
Msa0006870	Msa1183760	0.804076	2.569141e-49	-8.615850e-47
Msa0006870	Msa1200920	0.803146	4.006103e-49	-8.615850e-47
Msa0006870	Msa1219250	0.834304	3.237889e-56	-8.615850e-47
Msa0006870	Msa1228950	0.800166	1.637363e-48	-8.615850e-47
Msa0006870	Msa1232010	0.851522	8.400851e-61	-8.615850e-47
Msa0006870	Msa1232860	0.818609	1.792948e-52	-8.615850e-47
Msa0006870	Msa1235890	0.822518	2.269355e-53	-8.615850e-47
Msa0006870	Msa1271510	0.813380	2.635717e-51	-8.615850e-47
Msa0006870	Msa1271600	0.804401	2.198546e-49	-8.615850e-47
Msa0006870	Msa1274740	0.847683	9.903666e-60	-8.615850e-47
Msa0006870	Msa1275290	0.802203	6.270823e-49	-8.615850e-47
Msa0006870	Msa1279700	0.819174	1.333679e-52	-8.615850e-47
Msa0006870	Msa1293530	0.804537	2.059578e-49	-8.615850e-47
Msa0006870	Msa1307370	0.845974	2.904613e-59	-8.615850e-47
Msa0006870	Msa1312730	0.850659	1.471763e-60	-8.615850e-47
Msa0006870	Msa1315980	0.836180	1.088166e-56	-8.615850e-47
Msa0006870	Msa1336320	0.817703	2.873716e-52	-8.615850e-47
Msa0006870	Msa1354040	0.801798	7.595185e-49	-8.615850e-47
Msa0006870	Msa1361840	0.809650	1.704138e-50	-8.615850e-47
Msa0006870	Msa1367810	0.846793	1.737450e-59	-8.615850e-47
Msa0006870	Msa1398840	0.840309	9.398044e-58	-8.615850e-47
Msa0006870	Msa1415250	0.803177	3.947771e-49	-8.615850e-47
Msa0006870	Msa1432470	0.804962	1.679073e-49	-8.615850e-47
Msa0006870	Msa1434020	0.801485	8.805089e-49	-8.615850e-47
Msa0006870	Msa1437150	0.818618	1.784264e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0006870	MtrunA17_Chr1g0149051	98.391	373	6	0	3	375	4	376	0.0	756
Msa0006870	MtrunA17_Chr2g0332541	67.027	370	116	2	11	375	1	369	0.0	514
Msa0006870	MtrunA17_Chr3g0089391	56.325	332	143	2	36	367	32	361	8.40e-133	384
Msa0006870	MtrunA17_Chr4g0019571	52.676	355	164	4	15	367	12	364	3.63e-131	380
Msa0006870	MtrunA17_Chr4g0019581	52.113	355	166	3	15	367	81	433	5.42e-130	380
Msa0006870	MtrunA17_Chr4g0019601	52.394	355	165	3	15	367	12	364	1.59e-129	376
Msa0006870	MtrunA17_Chr2g0286051	46.797	359	185	3	13	369	11	365	1.52e-120	354

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0006870	AT5G11420.1	74.722	360	90	1	16	375	8	366	0.0	574
Msa0006870	AT5G25460.1	74.444	360	88	2	19	375	11	369	0.0	568
Msa0006870	AT4G32460.2	74.510	357	90	1	19	375	10	365	0.0	561
Msa0006870	AT4G32460.1	74.510	357	90	1	19	375	10	365	0.0	561
Msa0006870	AT4G32460.4	76.687	326	75	1	50	375	1	325	0.0	530
Msa0006870	AT4G32460.3	76.687	326	75	1	50	375	1	325	0.0	530
Msa0006870	AT1G80240.1	63.793	348	125	1	27	374	21	367	2.12e-165	467
Msa0006870	AT3G08030.1	55.224	335	149	1	33	367	26	359	2.02e-132	384
Msa0006870	AT2G41810.1	50.543	368	173	3	11	370	1	367	1.27e-128	374
Msa0006870	AT2G41800.1	51.754	342	164	1	32	373	30	370	2.14e-127	371
Msa0006870	AT3G08030.2	55.660	318	140	1	50	367	1	317	3.29e-126	366
Msa0006870	AT1G29980.1	50.000	346	163	3	33	369	38	382	1.08e-120	355
Msa0006870	AT1G29980.2	49.855	345	163	3	34	369	3	346	2.86e-120	353
Msa0006870	AT2G34510.1	48.246	342	171	2	33	369	38	378	1.73e-116	344
Msa0006870	AT2G34510.2	48.630	292	145	1	83	369	1	292	1.75e-102	305
Msa0006870	AT5G14150.2	27.957	372	227	13	13	367	8	355	1.81e-36	136
Msa0006870	AT5G14150.1	27.957	372	227	13	13	367	8	355	1.81e-36	136

Find 109 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGTCCGGGTTTGCCTATC+TGG	0.191893	1_1:-9853281	Msa0006870:three_prime_UTR
ATATCTGTTGCTCCTGATTT+TGG	0.209026	1_1:-9855469	Msa0006870:CDS
CCTTTACCTTTGGATGAATA+AGG	0.215858	1_1:+9853546	None:intergenic
TCTCGAAAATTGCATTCTTC+TGG	0.248365	1_1:+9853216	None:intergenic
TAGTATCAAAATATTACTTA+TGG	0.254293	1_1:-9853120	Msa0006870:three_prime_UTR
TTATTGATTCTGTTGCTCTT+AGG	0.255935	1_1:-9855312	Msa0006870:CDS
GATGATCTTTCTTCTCTTTG+TGG	0.265277	1_1:-9853435	Msa0006870:CDS
AAACCTGATATTTCCCATTC+TGG	0.280562	1_1:+9855676	None:intergenic
GGTTGGGATCCAATTGCTTA+TGG	0.285735	1_1:-9855412	Msa0006870:CDS
TGAATGGTCATCTTCTATAT+TGG	0.308808	1_1:+9853815	None:intergenic
CAAAGAATAAAAGTGATTAA+AGG	0.309159	1_1:-9855553	Msa0006870:CDS
AAGAAACTCTCATCGCCTTA+TGG	0.317677	1_1:+9853372	None:intergenic
TCAGTTTATATATATTTGTT+AGG	0.338328	1_1:-9853081	Msa0006870:three_prime_UTR
CCAAAACCATCAGAGCTAAA+AGG	0.348443	1_1:-9855730	Msa0006870:CDS
TGCTGGTAAAGACACAATTA+AGG	0.351879	1_1:-9853571	Msa0006870:CDS
TTTGAATCCACCTTTACCTT+TGG	0.354730	1_1:+9853536	None:intergenic
CACTTAAGTTTGTAGCTGTT+GGG	0.356396	1_1:-9853506	Msa0006870:CDS
TCTAAATATACCAACATCAT+TGG	0.356599	1_1:+9852891	None:intergenic
CACTTACTATTAGAAGCTTT+AGG	0.364523	1_1:+9855277	None:intergenic
GAATGGTCATCTTCTATATT+GGG	0.367423	1_1:+9853816	None:intergenic
TCAAGTTTGAGAAGAGGATA+TGG	0.377434	1_1:+9858093	None:intergenic
ATCACTCCATATGATGTGTT+AGG	0.384394	1_1:+9853846	None:intergenic
CTCACTGCATATGCACCTTC+TGG	0.384872	1_1:+9855601	None:intergenic
ATAGGCAAACCCGGACAAAA+TGG	0.392577	1_1:+9853285	None:intergenic
TCCATCTGGATTTATTCATC+TGG	0.401254	1_1:-9853320	Msa0006870:three_prime_UTR
GTCTCCCTCTCACTCATTGA+TGG	0.401514	1_1:-9857992	Msa0006870:intron
ATACCAGAATGGGAAATATC+AGG	0.401676	1_1:-9855679	Msa0006870:CDS
GTGAAGCTGATGAAGATTAC+AGG	0.405642	1_1:+9852820	None:intergenic
TTAGTAGAATACATAAAATC+TGG	0.416766	1_1:-9855655	Msa0006870:CDS
GCTTTAAAACCATAAGCAAT+TGG	0.419076	1_1:+9855403	None:intergenic
AGTATCAAAATATTACTTAT+GGG	0.424325	1_1:-9853119	Msa0006870:three_prime_UTR
GCACTTAAGTTTGTAGCTGT+TGG	0.424811	1_1:-9853507	Msa0006870:CDS
CTTGTATACAATGTTTGTAT+AGG	0.425750	1_1:+9855439	None:intergenic
AACTTGACATCATCAATAAC+AGG	0.428308	1_1:+9853411	None:intergenic
TGAATATGATGTTGTTGAAA+TGG	0.433098	1_1:-9855380	Msa0006870:CDS
ATATTCCCTAACACATCATA+TGG	0.435096	1_1:-9853852	Msa0006870:CDS
TTCTTCTGGATTTACCAATT+CGG	0.437198	1_1:+9853230	None:intergenic
AAGGATTCTACCATCCATCC+TGG	0.450439	1_1:+9853786	None:intergenic
AAAATAATAGTTGATGCATA+TGG	0.452672	1_1:-9852772	Msa0006870:three_prime_UTR
TGTACAGGACTAGTGGCAAA+TGG	0.453001	1_1:-9855769	Msa0006870:intron
CTAAAAGGAACAGTGGTAAC+TGG	0.459222	1_1:-9855715	Msa0006870:CDS
CTTAGCGTGCGTAAACCATA+AGG	0.460821	1_1:-9853387	Msa0006870:exon
TCCATCCTGGGAGGGGTGAA+TGG	0.464160	1_1:+9853799	None:intergenic
CAAGTTGCTAGAACAATTCC+AGG	0.464538	1_1:-9853669	Msa0006870:CDS
ATATATATAAACTGATCAAA+AGG	0.466999	1_1:+9853089	None:intergenic
TTGCAATTAGCAATGTTACC+AGG	0.469321	1_1:+9858153	None:intergenic
ATAGGAATAACACCAAAATC+AGG	0.482295	1_1:+9855457	None:intergenic
TAGCCTCACACCCATAAAAC+AGG	0.484221	1_1:+9853141	None:intergenic
AAGAAGGCGCGAGAATGAAA+TGG	0.491575	1_1:+9858127	None:intergenic
CATAAACAAGAACACATTCA+TGG	0.495034	1_1:+9858042	None:intergenic
TCTACTGCTCTTGTGCCTTG+TGG	0.498859	1_1:+9853723	None:intergenic
TTGAGAAGAGGATATGGTAT+GGG	0.502194	1_1:+9858099	None:intergenic
CCTTATTCATCCAAAGGTAA+AGG	0.506212	1_1:-9853546	Msa0006870:CDS
ATTGTATACAAGTAGTGGTT+GGG	0.508907	1_1:-9855428	Msa0006870:CDS
TCAATAAGAGGTCCACAAGC+AGG	0.514610	1_1:+9855328	None:intergenic
CAATGAGTGAGAGGGAGACA+TGG	0.518955	1_1:+9857996	None:intergenic
TCACTCCATATGATGTGTTA+GGG	0.524767	1_1:+9853847	None:intergenic
TTTGAGAAGAGGATATGGTA+TGG	0.530891	1_1:+9858098	None:intergenic
GTACAGGACTAGTGGCAAAT+GGG	0.532908	1_1:-9855768	Msa0006870:intron
CTTCATTCAAGTTTGAGAAG+AGG	0.533584	1_1:+9858087	None:intergenic
TCTACCATCCATCCTGGGAG+GGG	0.534305	1_1:+9853792	None:intergenic
AAGGTTCCTTATTCATCCAA+AGG	0.534346	1_1:-9853552	Msa0006870:CDS
TATGGTATGGGAAGGAAAGA+AGG	0.536527	1_1:+9858111	None:intergenic
TAGCTGTTGGGACAAGAACA+AGG	0.536783	1_1:-9853494	Msa0006870:CDS
CATTGTATACAAGTAGTGGT+TGG	0.537679	1_1:-9855429	Msa0006870:CDS
AGAGCAACAGAATCAATAAG+AGG	0.543262	1_1:+9855316	None:intergenic
TGAGAGGGAGACATGGAAAG+TGG	0.555486	1_1:+9858003	None:intergenic
GATGTGTTAGGGAATATATA+AGG	0.557138	1_1:+9853858	None:intergenic
TTACTATTAGAAGCTTTAGG+AGG	0.557212	1_1:+9855280	None:intergenic
GAAATGGTTATTCATAATCC+TGG	0.558117	1_1:-9855364	Msa0006870:CDS
CTGAGAAATGACCTGAGTCT+AGG	0.559607	1_1:+9853748	None:intergenic
ACCATTCACCCCTCCCAGGA+TGG	0.561579	1_1:-9853800	Msa0006870:CDS
ATCTGGATTTATTCATCTGG+CGG	0.562198	1_1:-9853317	Msa0006870:three_prime_UTR
TTCACCCCTCCCAGGATGGA+TGG	0.564481	1_1:-9853796	Msa0006870:CDS
TTCTACCATCCATCCTGGGA+GGG	0.568707	1_1:+9853791	None:intergenic
TGGTCATCTTCTATATTGGG+TGG	0.571757	1_1:+9853819	None:intergenic
CACAAGAGCAGTAGAACTAG+TGG	0.572866	1_1:-9853715	Msa0006870:CDS
TGCAATTAGCAATGTTACCA+GGG	0.574526	1_1:+9858154	None:intergenic
AGGATTCTACCATCCATCCT+GGG	0.576477	1_1:+9853787	None:intergenic
TATTCATCCAAAGGTAAAGG+TGG	0.579509	1_1:-9853543	Msa0006870:CDS
CAAACATTGTATACAAGTAG+TGG	0.588966	1_1:-9855433	Msa0006870:CDS
GTTAATAATCATCTTAAGAG+AGG	0.589674	1_1:+9853175	None:intergenic
GATGACCATTCACCCCTCCC+AGG	0.591765	1_1:-9853804	Msa0006870:CDS
GGTCATCTTCTATATTGGGT+GGG	0.591855	1_1:+9853820	None:intergenic
GCCAGATGAATAAATCCAGA+TGG	0.592612	1_1:+9853319	None:intergenic
AGAGCAGTAGAACTAGTGGC+AGG	0.596449	1_1:-9853711	Msa0006870:CDS
GAAGAGGATATGGTATGGGA+AGG	0.601005	1_1:+9858103	None:intergenic
GGTGCATATGCAGTGAGACT+AGG	0.601052	1_1:-9855595	Msa0006870:CDS
ACTTACCATCAATGAGTGAG+AGG	0.604105	1_1:+9857987	None:intergenic
GCAGGATCTTCTTCAACACC+AGG	0.604121	1_1:+9855346	None:intergenic
TGATATTTGTACAGGACTAG+TGG	0.607209	1_1:-9855776	Msa0006870:intron
GCAGTAAAATACCTAGACTC+AGG	0.607558	1_1:-9853759	Msa0006870:CDS
TCTGGATTTACCAATTCGGA+CGG	0.614686	1_1:+9853234	None:intergenic
GTTGAAGAAGATCCTGCTTG+TGG	0.629496	1_1:-9855340	Msa0006870:CDS
GGTGTCCAGATAGGCAAACC+CGG	0.634610	1_1:+9853276	None:intergenic
CTTACCATCAATGAGTGAGA+GGG	0.634839	1_1:+9857988	None:intergenic
AAAGGAACAGTGGTAACTGG+TGG	0.638704	1_1:-9855712	Msa0006870:CDS
ATCAGAGCTAAAAGGAACAG+TGG	0.653099	1_1:-9855722	Msa0006870:CDS
GAAAGTGGAACAGAAAAGCA+AGG	0.653658	1_1:+9858018	None:intergenic
GATGCAAGTAATTCATGTGA+AGG	0.655767	1_1:-9853615	Msa0006870:CDS
CATCACCAACTGAAAATGAG+AGG	0.658666	1_1:+9853634	None:intergenic
AACTGAAAATGAGAGGACAT+AGG	0.664170	1_1:+9853641	None:intergenic
GGTCATTTCTCAGTTCCACA+AGG	0.665974	1_1:-9853738	Msa0006870:CDS
ATGTTACTAGTTGTACCAGA+AGG	0.668517	1_1:-9855616	Msa0006870:CDS
GTGTGTGTATCCAATGATGT+TGG	0.688200	1_1:-9852901	Msa0006870:three_prime_UTR
ATTCTACCATCCATCCTGGG+AGG	0.697643	1_1:+9853790	None:intergenic
TAAAGGTGGATTCAAACGTG+CGG	0.707257	1_1:-9853529	Msa0006870:CDS
AGCTGTTGGGACAAGAACAA+GGG	0.708580	1_1:-9853493	Msa0006870:CDS
AAACAAGAACACATTCATGG+TGG	0.732804	1_1:+9858045	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTATTTAAAAATAGAAATAA+TGG	-	chr1_1:9853691-9853710	Msa0006870:CDS	10.0%
!!!	TAATTTGATTTTTTTTTGAA+AGG	-	chr1_1:9854477-9854496	Msa0006870:intron	10.0%
!!!	TATGGTTTGTATTTTTATTT+TGG	+	chr1_1:9853295-9853314	None:intergenic	15.0%
!!	TGAAATTATTGCAAAAATTA+CGG	+	chr1_1:9853596-9853615	None:intergenic	15.0%
!!!	AAATAGAAATAATGGTTTTT+TGG	-	chr1_1:9853699-9853718	Msa0006870:CDS	15.0%
!!!	TACTACTTTTATGTAAAAAT+TGG	+	chr1_1:9853902-9853921	None:intergenic	15.0%
!!	AAAAATACAAATAATTTGAC+TGG	+	chr1_1:9854023-9854042	None:intergenic	15.0%
!!!	TTTTAGAAACTATAAAAAAG+TGG	-	chr1_1:9854250-9854269	Msa0006870:intron	15.0%
!!	TATATAAAACAGTATATACA+TGG	-	chr1_1:9854294-9854313	Msa0006870:intron	15.0%
!!	TATTTAGTGTTATATTGTAT+TGG	-	chr1_1:9854882-9854901	Msa0006870:intron	15.0%
!!	ATTTAGTGTTATATTGTATT+GGG	-	chr1_1:9854883-9854902	Msa0006870:intron	15.0%
!!!	GTATTATTCAATAACTTTTA+TGG	-	chr1_1:9855373-9855392	Msa0006870:CDS	15.0%
!!	TAATACTCATAAATCTATTT+AGG	-	chr1_1:9855694-9855713	Msa0006870:CDS	15.0%
!!!	AGACATTATTCTATTTTTAA+GGG	+	chr1_1:9856723-9856742	None:intergenic	15.0%
!!!	TAGACATTATTCTATTTTTA+AGG	+	chr1_1:9856724-9856743	None:intergenic	15.0%
!!	TAGTATCAAAATATTACTTA+TGG	-	chr1_1:9857780-9857799	Msa0006870:intron	15.0%
!!	AGTATCAAAATATTACTTAT+GGG	-	chr1_1:9857781-9857800	Msa0006870:intron	15.0%
!!	ATATATATAAACTGATCAAA+AGG	+	chr1_1:9857814-9857833	None:intergenic	15.0%
!!	TCAGTTTATATATATTTGTT+AGG	-	chr1_1:9857819-9857838	Msa0006870:intron	15.0%
!!!	TATTTTTCTTTATTAGAACA+TGG	+	chr1_1:9858114-9858133	None:intergenic	15.0%
!!!	GATTTTTGTCATTGTAATTT+TGG	+	chr1_1:9853226-9853245	None:intergenic	20.0%
!!!	TTTTCTAGTTATATATCTAG+GGG	+	chr1_1:9853430-9853449	None:intergenic	20.0%
!!!	GTTTTCTAGTTATATATCTA+GGG	+	chr1_1:9853431-9853450	None:intergenic	20.0%
!!!	TGTTTTCTAGTTATATATCT+AGG	+	chr1_1:9853432-9853451	None:intergenic	20.0%
!!	AAAAGTAGTAGAATTTGTAT+TGG	-	chr1_1:9853912-9853931	Msa0006870:intron	20.0%
!!	AGATAATAATAATAATGCCT+TGG	+	chr1_1:9854168-9854187	None:intergenic	20.0%
!!!	TAAATGAATATGTGTCTTTT+GGG	-	chr1_1:9854317-9854336	Msa0006870:intron	20.0%
!!!	TTTTATAAGTTTTGGCAAAT+AGG	-	chr1_1:9854740-9854759	Msa0006870:intron	20.0%
!!!	TTTATAAGTTTTGGCAAATA+GGG	-	chr1_1:9854741-9854760	Msa0006870:intron	20.0%
!!!	AGAAAAGTGTATAAATAAAG+AGG	-	chr1_1:9854819-9854838	Msa0006870:intron	20.0%
!!	CAAATATCATACATCAATTT+AGG	+	chr1_1:9855113-9855132	None:intergenic	20.0%
!!	TTAGTAGAATACATAAAATC+TGG	-	chr1_1:9855245-9855264	Msa0006870:intron	20.0%
!!	CAAAGAATAAAAGTGATTAA+AGG	-	chr1_1:9855347-9855366	Msa0006870:CDS	20.0%
!!!	TTATTCAATAACTTTTATGG+TGG	-	chr1_1:9855376-9855395	Msa0006870:CDS	20.0%
!!!	AAGTGTAGTACTTATTTTTT+TGG	-	chr1_1:9855745-9855764	Msa0006870:CDS	20.0%
!!!	CAAGTGTTTAAGTTAAAATA+AGG	-	chr1_1:9855792-9855811	Msa0006870:intron	20.0%
!!	ACCTAAAGATAATTAATCTA+GGG	+	chr1_1:9855984-9856003	None:intergenic	20.0%
!!	CCAATAAAACTTTAATAGTA+TGG	+	chr1_1:9856326-9856345	None:intergenic	20.0%
!!!	CCATACTATTAAAGTTTTAT+TGG	-	chr1_1:9856323-9856342	Msa0006870:intron	20.0%
!!!	GACATTATTCTATTTTTAAG+GGG	+	chr1_1:9856722-9856741	None:intergenic	20.0%
!!	CAAAATTAAATGCATATCAA+TGG	-	chr1_1:9856746-9856765	Msa0006870:intron	20.0%
!!!	ATACATGTAATTTTAGACTT+TGG	-	chr1_1:9856778-9856797	Msa0006870:intron	20.0%
!!!	ATTTTTTAATATGTTCTCTG+TGG	+	chr1_1:9857004-9857023	None:intergenic	20.0%
!!	ACAGAGAACATATTAAAAAA+TGG	-	chr1_1:9857003-9857022	Msa0006870:intron	20.0%
!!!	TCAGATCTTTTATAAAAGAA+GGG	+	chr1_1:9857863-9857882	None:intergenic	20.0%
!!!	AAAATAATAGTTGATGCATA+TGG	-	chr1_1:9858128-9858147	Msa0006870:five_prime_UTR	20.0%
!	AAAATATATGTATGTGTGTG+TGG	+	chr1_1:9852956-9852975	None:intergenic	25.0%
!	CTAAACATCTTAAACAATGT+TGG	-	chr1_1:9852988-9853007	Msa0006870:three_prime_UTR	25.0%
!!!	AATGTTGGTTAGTATCATTT+TGG	-	chr1_1:9853003-9853022	Msa0006870:three_prime_UTR	25.0%
!!	ATGTTCTTTGTTAGTCATTT+TGG	-	chr1_1:9853095-9853114	Msa0006870:three_prime_UTR	25.0%
!!	TTTAAGATGTGTTTGTAGTT+TGG	-	chr1_1:9853193-9853212	Msa0006870:three_prime_UTR	25.0%
!!!	ACATTTTCAACTTTAGCTTA+TGG	+	chr1_1:9853313-9853332	None:intergenic	25.0%
!	AAGCTAAAGTTGAAAATGTT+TGG	-	chr1_1:9853314-9853333	Msa0006870:three_prime_UTR	25.0%
!	AGCTAAAGTTGAAAATGTTT+GGG	-	chr1_1:9853315-9853334	Msa0006870:three_prime_UTR	25.0%
!	GAACAAATCTACAACAATAA+TGG	+	chr1_1:9853529-9853548	None:intergenic	25.0%
!	TTGTTCTAGTACATAGTATT+TGG	-	chr1_1:9853543-9853562	Msa0006870:CDS	25.0%
!	TAACCATAGTATATAGTACT+AGG	+	chr1_1:9853642-9853661	None:intergenic	25.0%
!	ATATTAGATTACATTTGACC+TGG	-	chr1_1:9853942-9853961	Msa0006870:intron	25.0%
!	TATTAGATTACATTTGACCT+GGG	-	chr1_1:9853943-9853962	Msa0006870:intron	25.0%
!	TTATGAGATCAAATACAATG+TGG	-	chr1_1:9854061-9854080	Msa0006870:intron	25.0%
!!	TGGTAAAATTTTTGTAGAAG+TGG	-	chr1_1:9854210-9854229	Msa0006870:intron	25.0%
!!	TAAAATTTTTGTAGAAGTGG+TGG	-	chr1_1:9854213-9854232	Msa0006870:intron	25.0%
!!	GTAAATGAATATGTGTCTTT+TGG	-	chr1_1:9854316-9854335	Msa0006870:intron	25.0%
!	TCTATAATATGATTGTCTGT+CGG	-	chr1_1:9854650-9854669	Msa0006870:intron	25.0%
!!!	TTATAAGTTTTGGCAAATAG+GGG	-	chr1_1:9854742-9854761	Msa0006870:intron	25.0%
!	TGTATAAATAAAGAGGAAAG+TGG	-	chr1_1:9854826-9854845	Msa0006870:intron	25.0%
!	GAAAGTGGAATATATTGTAT+TGG	-	chr1_1:9854841-9854860	Msa0006870:intron	25.0%
!!	TTGAAATGAGTCAGTTATTT+TGG	-	chr1_1:9854929-9854948	Msa0006870:intron	25.0%
!!!	TGAAATGAGTCAGTTATTTT+GGG	-	chr1_1:9854930-9854949	Msa0006870:intron	25.0%
!	TCCTTAATCTTGATTGAAAT+AGG	+	chr1_1:9855059-9855078	None:intergenic	25.0%
!!	ATCATACATCAATTTAGGTT+AGG	+	chr1_1:9855108-9855127	None:intergenic	25.0%
!	TTGATGTATGATATTTGTAC+AGG	-	chr1_1:9855116-9855135	Msa0006870:intron	25.0%
!	AAAAAACTCAATACCAGAAT+GGG	-	chr1_1:9855211-9855230	Msa0006870:intron	25.0%
!	ATAAAATCTGGACAAAAACA+AGG	-	chr1_1:9855257-9855276	Msa0006870:intron	25.0%
!	CTTGTATACAATGTTTGTAT+AGG	+	chr1_1:9855464-9855483	None:intergenic	25.0%
!	TGAATATGATGTTGTTGAAA+TGG	-	chr1_1:9855520-9855539	Msa0006870:CDS	25.0%
!!	CTACATATTTGACTTTAAAG+TGG	+	chr1_1:9855863-9855882	None:intergenic	25.0%
!!!	CACTTTAAAGTCAAATATGT+AGG	-	chr1_1:9855861-9855880	Msa0006870:intron	25.0%
!	AAAGTCAAATATGTAGGTAT+TGG	-	chr1_1:9855867-9855886	Msa0006870:intron	25.0%
!	TAAGTTAAGTATAGACCAAA+TGG	+	chr1_1:9855941-9855960	None:intergenic	25.0%
!	TCCCTAGATTAATTATCTTT+AGG	-	chr1_1:9855980-9855999	Msa0006870:intron	25.0%
!	GACCTAAAGATAATTAATCT+AGG	+	chr1_1:9855985-9856004	None:intergenic	25.0%
!!	ATTTAACTAGCTTCCTTAAT+AGG	+	chr1_1:9856161-9856180	None:intergenic	25.0%
!	ATATCAAACACTAAAACCAA+TGG	-	chr1_1:9856215-9856234	Msa0006870:intron	25.0%
!	ATATTAATGTGTATAGACAC+AGG	-	chr1_1:9856247-9856266	Msa0006870:intron	25.0%
!	TATTAATGTGTATAGACACA+GGG	-	chr1_1:9856248-9856267	Msa0006870:intron	25.0%
!	AATAAGAAGTGAGAAAAACA+AGG	+	chr1_1:9856418-9856437	None:intergenic	25.0%
!!!	TTGTTTTTCTCACTTCTTAT+TGG	-	chr1_1:9856417-9856436	Msa0006870:intron	25.0%
!	TTCTTATTGGTCAAAAACAA+TGG	-	chr1_1:9856430-9856449	Msa0006870:intron	25.0%
!	TCTTATTGGTCAAAAACAAT+GGG	-	chr1_1:9856431-9856450	Msa0006870:intron	25.0%
!	ATACTAAATGTGCACTAATT+TGG	-	chr1_1:9856876-9856895	Msa0006870:intron	25.0%
!	GAGAACATATTAAAAAATGG+TGG	-	chr1_1:9857006-9857025	Msa0006870:intron	25.0%
!!!	TAGGTATTTTACTGCTTTTA+AGG	+	chr1_1:9857136-9857155	None:intergenic	25.0%
!	AACGCGTTTAAAAATTCATA+GGG	+	chr1_1:9857560-9857579	None:intergenic	25.0%
!	AAACGCGTTTAAAAATTCAT+AGG	+	chr1_1:9857561-9857580	None:intergenic	25.0%
!!	GAAAAAAATACCATTTTGTC+CGG	-	chr1_1:9857605-9857624	Msa0006870:intron	25.0%
!!	AAAAAAATACCATTTTGTCC+GGG	-	chr1_1:9857606-9857625	Msa0006870:intron	25.0%
!!!	GGAAAAAATACAGTTTTTTC+TGG	+	chr1_1:9857648-9857667	None:intergenic	25.0%
!	GTTAATAATCATCTTAAGAG+AGG	+	chr1_1:9857728-9857747	None:intergenic	25.0%
!!	TTATTATTGAGCCTGTTTTA+TGG	-	chr1_1:9857748-9857767	Msa0006870:intron	25.0%
!!	TATTATTGAGCCTGTTTTAT+GGG	-	chr1_1:9857749-9857768	Msa0006870:intron	25.0%
!!	CTCAGATCTTTTATAAAAGA+AGG	+	chr1_1:9857864-9857883	None:intergenic	25.0%
!!	TCTTTTATAAAAGATCTGAG+AGG	-	chr1_1:9857864-9857883	Msa0006870:intron	25.0%
!	TCTAAATATACCAACATCAT+TGG	+	chr1_1:9858012-9858031	None:intergenic	25.0%
	CATAAACAAGAACACATTCA+TGG	+	chr1_1:9852861-9852880	None:intergenic	30.0%
!!	TTGGTTCTAAAATGTATGAG+AGG	-	chr1_1:9853022-9853041	Msa0006870:three_prime_UTR	30.0%
!!	AGTACATGTGTTACTTTGTA+GGG	-	chr1_1:9853360-9853379	Msa0006870:three_prime_UTR	30.0%
	TTATATATCTAGGGGAAACA+AGG	+	chr1_1:9853422-9853441	None:intergenic	30.0%
!!	ATTGGTTTGTAGCTAGTTAA+AGG	+	chr1_1:9853884-9853903	None:intergenic	30.0%
!	GTAGTAGAATTTGTATTGGT+TGG	-	chr1_1:9853916-9853935	Msa0006870:intron	30.0%
	CCAATTATTGTCATTGGAAA+AGG	+	chr1_1:9854692-9854711	None:intergenic	30.0%
!	CCTTTTCCAATGACAATAAT+TGG	-	chr1_1:9854689-9854708	Msa0006870:intron	30.0%
	TGCAATCCAATTATTGTCAT+TGG	+	chr1_1:9854698-9854717	None:intergenic	30.0%
	CAAAGTATGTCAATTATACC+GGG	+	chr1_1:9854782-9854801	None:intergenic	30.0%
	CCAAAGTATGTCAATTATAC+CGG	+	chr1_1:9854783-9854802	None:intergenic	30.0%
	GCCTATTTCAATCAAGATTA+AGG	-	chr1_1:9855055-9855074	Msa0006870:intron	30.0%
	GAAAAAACTCAATACCAGAA+TGG	-	chr1_1:9855210-9855229	Msa0006870:intron	30.0%
	ATAGGAATAACACCAAAATC+AGG	+	chr1_1:9855446-9855465	None:intergenic	30.0%
	CAAACATTGTATACAAGTAG+TGG	-	chr1_1:9855467-9855486	Msa0006870:CDS	30.0%
	ATTGTATACAAGTAGTGGTT+GGG	-	chr1_1:9855472-9855491	Msa0006870:CDS	30.0%
!!	GCTTTAAAACCATAAGCAAT+TGG	+	chr1_1:9855500-9855519	None:intergenic	30.0%
	GAAATGGTTATTCATAATCC+TGG	-	chr1_1:9855536-9855555	Msa0006870:CDS	30.0%
!!	TTATTGATTCTGTTGCTCTT+AGG	-	chr1_1:9855588-9855607	Msa0006870:CDS	30.0%
!!	TTACTATTAGAAGCTTTAGG+AGG	+	chr1_1:9855623-9855642	None:intergenic	30.0%
	CACTTACTATTAGAAGCTTT+AGG	+	chr1_1:9855626-9855645	None:intergenic	30.0%
	ATTGTTCACATGTGAAGATT+TGG	+	chr1_1:9856013-9856032	None:intergenic	30.0%
	AGCTGGATTAATACCTATTA+AGG	-	chr1_1:9856145-9856164	Msa0006870:intron	30.0%
	TTAATATACATCCACACCAT+TGG	+	chr1_1:9856234-9856253	None:intergenic	30.0%
	TCAACAAAGTTGTCATCAAA+TGG	+	chr1_1:9856392-9856411	None:intergenic	30.0%
	CTTATTGGTCAAAAACAATG+GGG	-	chr1_1:9856432-9856451	Msa0006870:intron	30.0%
!!!	AACCACTTTTTGACAACTTT+TGG	+	chr1_1:9856515-9856534	None:intergenic	30.0%
!!	AAAAATGGTGGATTTGAAGA+AGG	-	chr1_1:9857018-9857037	Msa0006870:intron	30.0%
	GATGTGTTAGGGAATATATA+AGG	+	chr1_1:9857045-9857064	None:intergenic	30.0%
	ATATTCCCTAACACATCATA+TGG	-	chr1_1:9857048-9857067	Msa0006870:intron	30.0%
	GAATGGTCATCTTCTATATT+GGG	+	chr1_1:9857087-9857106	None:intergenic	30.0%
	TGAATGGTCATCTTCTATAT+TGG	+	chr1_1:9857088-9857107	None:intergenic	30.0%
	AACTTGACATCATCAATAAC+AGG	+	chr1_1:9857492-9857511	None:intergenic	30.0%
	CGTTTAAAAATTCATAGGGT+AGG	+	chr1_1:9857556-9857575	None:intergenic	30.0%
	TTCTTCTGGATTTACCAATT+CGG	+	chr1_1:9857673-9857692	None:intergenic	30.0%
!!	AGAATGCAATTTTCGAGAAA+TGG	-	chr1_1:9857689-9857708	Msa0006870:intron	30.0%
!!	GAATGCAATTTTCGAGAAAT+GGG	-	chr1_1:9857690-9857709	Msa0006870:intron	30.0%
!	TGCTATCATTCTTTTTCTTC+AGG	+	chr1_1:9857963-9857982	None:intergenic	30.0%
	TTGCAATTAGCAATGTTACC+AGG	+	chr1_1:9852750-9852769	None:intergenic	35.0%
	TTGAGAAGAGGATATGGTAT+GGG	+	chr1_1:9852804-9852823	None:intergenic	35.0%
	TTTGAGAAGAGGATATGGTA+TGG	+	chr1_1:9852805-9852824	None:intergenic	35.0%
	TCAAGTTTGAGAAGAGGATA+TGG	+	chr1_1:9852810-9852829	None:intergenic	35.0%
!	CTTCATTCAAGTTTGAGAAG+AGG	+	chr1_1:9852816-9852835	None:intergenic	35.0%
	AAACAAGAACACATTCATGG+TGG	+	chr1_1:9852858-9852877	None:intergenic	35.0%
!	AAGTAACACATGTACTGGTA+AGG	+	chr1_1:9853356-9853375	None:intergenic	35.0%
	CTACAAAGTAACACATGTAC+TGG	+	chr1_1:9853361-9853380	None:intergenic	35.0%
!!	CAGTACATGTGTTACTTTGT+AGG	-	chr1_1:9853359-9853378	Msa0006870:three_prime_UTR	35.0%
	GCACCTAGTACTATATACTA+TGG	-	chr1_1:9853636-9853655	Msa0006870:CDS	35.0%
	CATACCCAAAGAATATGAGA+GGG	+	chr1_1:9853726-9853745	None:intergenic	35.0%
	TCATACCCAAAGAATATGAG+AGG	+	chr1_1:9853727-9853746	None:intergenic	35.0%
	TGATGGTCTGAAAAATCACA+TGG	-	chr1_1:9853762-9853781	Msa0006870:CDS	35.0%
	GATGGTCTGAAAAATCACAT+GGG	-	chr1_1:9853763-9853782	Msa0006870:CDS	35.0%
	ATGGTCTGAAAAATCACATG+GGG	-	chr1_1:9853764-9853783	Msa0006870:CDS	35.0%
	ACTTATCACAAATGTCTCAG+AGG	-	chr1_1:9853850-9853869	Msa0006870:CDS	35.0%
!!	GAATGAAAGATAGTGGAAAG+TGG	+	chr1_1:9853971-9853990	None:intergenic	35.0%
	GGACAAAGAATGAAAGATAG+TGG	+	chr1_1:9853978-9853997	None:intergenic	35.0%
	CTAGACATGATCTAATACCA+AGG	-	chr1_1:9854148-9854167	Msa0006870:intron	35.0%
!	ATAGGTTTAGCTTAGCTTGA+TGG	-	chr1_1:9854190-9854209	Msa0006870:intron	35.0%
!!	TGAATATGTGTCTTTTGGGT+AGG	-	chr1_1:9854321-9854340	Msa0006870:intron	35.0%
!!	TATGATTGTCTGTCGGTTTA+TGG	-	chr1_1:9854657-9854676	Msa0006870:intron	35.0%
	CCGGTATAATTGACATACTT+TGG	-	chr1_1:9854780-9854799	Msa0006870:intron	35.0%
	GAAAATGAGTCAGTTATTCC+AGG	-	chr1_1:9854966-9854985	Msa0006870:intron	35.0%
	TGATATTTGTACAGGACTAG+TGG	-	chr1_1:9855124-9855143	Msa0006870:intron	35.0%
	ATACCAGAATGGGAAATATC+AGG	-	chr1_1:9855221-9855240	Msa0006870:intron	35.0%
	AAACCTGATATTTCCCATTC+TGG	+	chr1_1:9855227-9855246	None:intergenic	35.0%
	ATGTTACTAGTTGTACCAGA+AGG	-	chr1_1:9855284-9855303	Msa0006870:CDS	35.0%
!	ATATCTGTTGCTCCTGATTT+TGG	-	chr1_1:9855431-9855450	Msa0006870:CDS	35.0%
	CATTGTATACAAGTAGTGGT+TGG	-	chr1_1:9855471-9855490	Msa0006870:CDS	35.0%
	AGAGCAACAGAATCAATAAG+AGG	+	chr1_1:9855587-9855606	None:intergenic	35.0%
	TTGTAGATGCAAGAACCATT+TGG	-	chr1_1:9855923-9855942	Msa0006870:intron	35.0%
	AAACACTAAAACCAATGGTG+TGG	-	chr1_1:9856220-9856239	Msa0006870:intron	35.0%
	GCTACTAGTACATATGCATA+TGG	-	chr1_1:9856347-9856366	Msa0006870:intron	35.0%
	AAAACAATGGGGAGAGAAAA+AGG	-	chr1_1:9856443-9856462	Msa0006870:intron	35.0%
	GTCCAAAAGTTGTCAAAAAG+TGG	-	chr1_1:9856510-9856529	Msa0006870:intron	35.0%
	TCATTGCATTGTGTGTCATA+CGG	-	chr1_1:9856625-9856644	Msa0006870:intron	35.0%
	ACTTGCCTTTAGCAAAGAAA+AGG	-	chr1_1:9856675-9856694	Msa0006870:intron	35.0%
	CTTGCCTTTAGCAAAGAAAA+GGG	-	chr1_1:9856676-9856695	Msa0006870:intron	35.0%
!	AGATCCCTTTTCTTTGCTAA+AGG	+	chr1_1:9856683-9856702	None:intergenic	35.0%
	GTCATACATGAACTAAATCG+AGG	-	chr1_1:9856828-9856847	Msa0006870:intron	35.0%
	CAACATCATTTGCACTATGT+TGG	-	chr1_1:9856911-9856930	Msa0006870:intron	35.0%
	TCACTCCATATGATGTGTTA+GGG	+	chr1_1:9857056-9857075	None:intergenic	35.0%
	ATCACTCCATATGATGTGTT+AGG	+	chr1_1:9857057-9857076	None:intergenic	35.0%
	AACTGAAAATGAGAGGACAT+AGG	+	chr1_1:9857262-9857281	None:intergenic	35.0%
!	TATGTCCTCTCATTTTCAGT+TGG	-	chr1_1:9857261-9857280	Msa0006870:intron	35.0%
	GATGCAAGTAATTCATGTGA+AGG	-	chr1_1:9857285-9857304	Msa0006870:intron	35.0%
!	ATGATTGTTGAAGCTTTTGC+TGG	-	chr1_1:9857312-9857331	Msa0006870:intron	35.0%
	TGCTGGTAAAGACACAATTA+AGG	-	chr1_1:9857329-9857348	Msa0006870:intron	35.0%
	AAGGTTCCTTATTCATCCAA+AGG	-	chr1_1:9857348-9857367	Msa0006870:intron	35.0%
	CCTTTACCTTTGGATGAATA+AGG	+	chr1_1:9857357-9857376	None:intergenic	35.0%
	CCTTATTCATCCAAAGGTAA+AGG	-	chr1_1:9857354-9857373	Msa0006870:intron	35.0%
	TATTCATCCAAAGGTAAAGG+TGG	-	chr1_1:9857357-9857376	Msa0006870:intron	35.0%
	TTTGAATCCACCTTTACCTT+TGG	+	chr1_1:9857367-9857386	None:intergenic	35.0%
	CACTTAAGTTTGTAGCTGTT+GGG	-	chr1_1:9857394-9857413	Msa0006870:intron	35.0%
	GATGATCTTTCTTCTCTTTG+TGG	-	chr1_1:9857465-9857484	Msa0006870:intron	35.0%
!	TTTTTAAACGCGTTTCCATC+TGG	-	chr1_1:9857566-9857585	Msa0006870:intron	35.0%
	TCCATCTGGATTTATTCATC+TGG	-	chr1_1:9857580-9857599	Msa0006870:intron	35.0%
	ATCTGGATTTATTCATCTGG+CGG	-	chr1_1:9857583-9857602	Msa0006870:intron	35.0%
!!!	TGTATTTTTTCCGTCCGAAT+TGG	-	chr1_1:9857656-9857675	Msa0006870:intron	35.0%
	TCTCGAAAATTGCATTCTTC+TGG	+	chr1_1:9857687-9857706	None:intergenic	35.0%
	TATGGTATGGGAAGGAAAGA+AGG	+	chr1_1:9852792-9852811	None:intergenic	40.0%
	GAAAGTGGAACAGAAAAGCA+AGG	+	chr1_1:9852885-9852904	None:intergenic	40.0%
	CTTACCATCAATGAGTGAGA+GGG	+	chr1_1:9852915-9852934	None:intergenic	40.0%
	ACTTACCATCAATGAGTGAG+AGG	+	chr1_1:9852916-9852935	None:intergenic	40.0%
!!	TGTGTTACTTTGTAGGGACT+TGG	-	chr1_1:9853366-9853385	Msa0006870:three_prime_UTR	40.0%
	TTGGACCCTCTCATATTCTT+TGG	-	chr1_1:9853718-9853737	Msa0006870:CDS	40.0%
	TGGACCCTCTCATATTCTTT+GGG	-	chr1_1:9853719-9853738	Msa0006870:CDS	40.0%
	ATTTGTGATAAGTCACGTGG+TGG	+	chr1_1:9853843-9853862	None:intergenic	40.0%
	GACATTTGTGATAAGTCACG+TGG	+	chr1_1:9853846-9853865	None:intergenic	40.0%
	CCACTGTAGGAAATCAAATC+AGG	+	chr1_1:9853999-9854018	None:intergenic	40.0%
!	CCTGATTTGATTTCCTACAG+TGG	-	chr1_1:9853996-9854015	Msa0006870:intron	40.0%
	TAATTTGACTGGACCACTGT+AGG	+	chr1_1:9854012-9854031	None:intergenic	40.0%
	GTATGTCAATTATACCGGGA+CGG	+	chr1_1:9854778-9854797	None:intergenic	40.0%
	ATGAGTCAGTTATTCCAGGA+CGG	-	chr1_1:9854970-9854989	Msa0006870:intron	40.0%
!	GCAAATGGGAATTTTGAGCT+TGG	-	chr1_1:9855146-9855165	Msa0006870:intron	40.0%
!!!	CCTTTTAGCTCTGATGGTTT+TGG	+	chr1_1:9855173-9855192	None:intergenic	40.0%
	CCAAAACCATCAGAGCTAAA+AGG	-	chr1_1:9855170-9855189	Msa0006870:intron	40.0%
!!!	ACTGTTCCTTTTAGCTCTGA+TGG	+	chr1_1:9855179-9855198	None:intergenic	40.0%
	ATCAGAGCTAAAAGGAACAG+TGG	-	chr1_1:9855178-9855197	Msa0006870:intron	40.0%
	CTAAAAGGAACAGTGGTAAC+TGG	-	chr1_1:9855185-9855204	Msa0006870:intron	40.0%
	TAATCTAGGGATAGTGCGTT+TGG	+	chr1_1:9855971-9855990	None:intergenic	40.0%
	CACATGTGAAGATTTGGCAA+TGG	+	chr1_1:9856007-9856026	None:intergenic	40.0%
	GTGTCATACGGAAATCAGTT+AGG	-	chr1_1:9856637-9856656	Msa0006870:intron	40.0%
	CACACACTATGTGCTAAAGT+TGG	+	chr1_1:9856806-9856825	None:intergenic	40.0%
	GGTCATCTTCTATATTGGGT+GGG	+	chr1_1:9857083-9857102	None:intergenic	40.0%
	TGGTCATCTTCTATATTGGG+TGG	+	chr1_1:9857084-9857103	None:intergenic	40.0%
	GCAGTAAAATACCTAGACTC+AGG	-	chr1_1:9857141-9857160	Msa0006870:intron	40.0%
	CAAGTTGCTAGAACAATTCC+AGG	-	chr1_1:9857231-9857250	Msa0006870:intron	40.0%
	CATCACCAACTGAAAATGAG+AGG	+	chr1_1:9857269-9857288	None:intergenic	40.0%
!	TAAAGGTGGATTCAAACGTG+CGG	-	chr1_1:9857371-9857390	Msa0006870:intron	40.0%
	GCACTTAAGTTTGTAGCTGT+TGG	-	chr1_1:9857393-9857412	Msa0006870:intron	40.0%
	AAGAAACTCTCATCGCCTTA+TGG	+	chr1_1:9857531-9857550	None:intergenic	40.0%
	GCCAGATGAATAAATCCAGA+TGG	+	chr1_1:9857584-9857603	None:intergenic	40.0%
!!!	GTTTTTTCTGGTGTCCAGAT+AGG	+	chr1_1:9857636-9857655	None:intergenic	40.0%
	TCTGGATTTACCAATTCGGA+CGG	+	chr1_1:9857669-9857688	None:intergenic	40.0%
!!	TGCAATTTTCGAGAAATGGG+TGG	-	chr1_1:9857693-9857712	Msa0006870:intron	40.0%
!!	GCAATTTTCGAGAAATGGGT+GGG	-	chr1_1:9857694-9857713	Msa0006870:intron	40.0%
!!	CAATTTTCGAGAAATGGGTG+GGG	-	chr1_1:9857695-9857714	Msa0006870:intron	40.0%
	GTGTGTGTATCCAATGATGT+TGG	-	chr1_1:9857999-9858018	Msa0006870:CDS	40.0%
	GTGAAGCTGATGAAGATTAC+AGG	+	chr1_1:9858083-9858102	None:intergenic	40.0%
!	AAGAAGGCGCGAGAATGAAA+TGG	+	chr1_1:9852776-9852795	None:intergenic	45.0%
	GAAGAGGATATGGTATGGGA+AGG	+	chr1_1:9852800-9852819	None:intergenic	45.0%
!	GAAAAGAGCACGCATGATGA+TGG	-	chr1_1:9853745-9853764	Msa0006870:CDS	45.0%
!	TGTACAGGACTAGTGGCAAA+TGG	-	chr1_1:9855131-9855150	Msa0006870:intron	45.0%
!	GTACAGGACTAGTGGCAAAT+GGG	-	chr1_1:9855132-9855151	Msa0006870:intron	45.0%
	AAAGGAACAGTGGTAACTGG+TGG	-	chr1_1:9855188-9855207	Msa0006870:intron	45.0%
	GGTTGGGATCCAATTGCTTA+TGG	-	chr1_1:9855488-9855507	Msa0006870:CDS	45.0%
	GTTGAAGAAGATCCTGCTTG+TGG	-	chr1_1:9855560-9855579	Msa0006870:CDS	45.0%
	TCAATAAGAGGTCCACAAGC+AGG	+	chr1_1:9855575-9855594	None:intergenic	45.0%
	AGCACACAATAGAACACAGC+TGG	-	chr1_1:9856128-9856147	Msa0006870:intron	45.0%
	AACATCCTACCTACCTTCTC+TGG	+	chr1_1:9856274-9856293	None:intergenic	45.0%
	GGAGAGAAAAAGGAAGAGAG+AGG	-	chr1_1:9856453-9856472	Msa0006870:intron	45.0%
	AGGATTCTACCATCCATCCT+GGG	+	chr1_1:9857116-9857135	None:intergenic	45.0%
	AAGGATTCTACCATCCATCC+TGG	+	chr1_1:9857117-9857136	None:intergenic	45.0%
	CTGAGAAATGACCTGAGTCT+AGG	+	chr1_1:9857155-9857174	None:intergenic	45.0%
	GGTCATTTCTCAGTTCCACA+AGG	-	chr1_1:9857162-9857181	Msa0006870:intron	45.0%
	CACAAGAGCAGTAGAACTAG+TGG	-	chr1_1:9857185-9857204	Msa0006870:intron	45.0%
	TAGCTGTTGGGACAAGAACA+AGG	-	chr1_1:9857406-9857425	Msa0006870:intron	45.0%
	AGCTGTTGGGACAAGAACAA+GGG	-	chr1_1:9857407-9857426	Msa0006870:intron	45.0%
	CTTAGCGTGCGTAAACCATA+AGG	-	chr1_1:9857513-9857532	Msa0006870:intron	45.0%
	ATAGGCAAACCCGGACAAAA+TGG	+	chr1_1:9857618-9857637	None:intergenic	45.0%
	TAGCCTCACACCCATAAAAC+AGG	+	chr1_1:9857762-9857781	None:intergenic	45.0%
!!	ATTATTATTATTATCTATAT+AGG	-	chr1_1:9854172-9854191	Msa0006870:intron	5.0%
!!!	ATTTTTATTTTTATAAGTTT+TGG	-	chr1_1:9854732-9854751	Msa0006870:intron	5.0%
	TGAGAGGGAGACATGGAAAG+TGG	+	chr1_1:9852900-9852919	None:intergenic	50.0%
	CAATGAGTGAGAGGGAGACA+TGG	+	chr1_1:9852907-9852926	None:intergenic	50.0%
	GTCTCCCTCTCACTCATTGA+TGG	-	chr1_1:9852908-9852927	Msa0006870:three_prime_UTR	50.0%
	TGTCAATTATACCGGGACGG+AGG	+	chr1_1:9854775-9854794	None:intergenic	50.0%
	AGTCAGTTATTCCAGGACGG+AGG	-	chr1_1:9854973-9854992	Msa0006870:intron	50.0%
	GTCAGTTATTCCAGGACGGA+GGG	-	chr1_1:9854974-9854993	Msa0006870:intron	50.0%
	ATATAGTACTCCCTCCGTCC+TGG	+	chr1_1:9854987-9855006	None:intergenic	50.0%
	CTCACTGCATATGCACCTTC+TGG	+	chr1_1:9855302-9855321	None:intergenic	50.0%
	GGTGCATATGCAGTGAGACT+AGG	-	chr1_1:9855305-9855324	Msa0006870:CDS	50.0%
	GCAGGATCTTCTTCAACACC+AGG	+	chr1_1:9855557-9855576	None:intergenic	50.0%
	TATAGACACAGGGCCAGAGA+AGG	-	chr1_1:9856258-9856277	Msa0006870:intron	50.0%
	TTCTACCATCCATCCTGGGA+GGG	+	chr1_1:9857112-9857131	None:intergenic	50.0%
	ATTCTACCATCCATCCTGGG+AGG	+	chr1_1:9857113-9857132	None:intergenic	50.0%
	TCTACTGCTCTTGTGCCTTG+TGG	+	chr1_1:9857180-9857199	None:intergenic	50.0%
	AGAGCAGTAGAACTAGTGGC+AGG	-	chr1_1:9857189-9857208	Msa0006870:intron	50.0%
!	GAGAGGACATAGGTTTTGCC+TGG	+	chr1_1:9857252-9857271	None:intergenic	50.0%
	TTTGTCCGGGTTTGCCTATC+TGG	-	chr1_1:9857619-9857638	Msa0006870:intron	50.0%
!	GAGCCTGTTTTATGGGTGTG+AGG	-	chr1_1:9857756-9857775	Msa0006870:intron	50.0%
	ACATGGGGCTGTATGCCAAC+TGG	-	chr1_1:9853779-9853798	Msa0006870:CDS	55.0%
	CATGGGGCTGTATGCCAACT+GGG	-	chr1_1:9853780-9853799	Msa0006870:CDS	55.0%
	ATGGGGCTGTATGCCAACTG+GGG	-	chr1_1:9853781-9853800	Msa0006870:CDS	55.0%
	CACTCATCAACTCCCCCAGT+TGG	+	chr1_1:9853797-9853816	None:intergenic	55.0%
!!	GATAGTGGAAAGTGGAGCCC+AGG	+	chr1_1:9853963-9853982	None:intergenic	55.0%
	TCTACCATCCATCCTGGGAG+GGG	+	chr1_1:9857111-9857130	None:intergenic	55.0%
	GGTGTCCAGATAGGCAAACC+CGG	+	chr1_1:9857627-9857646	None:intergenic	55.0%
	TGGGGCTGTATGCCAACTGG+GGG	-	chr1_1:9853782-9853801	Msa0006870:CDS	60.0%
	GGGGTATACTACCTCCGTCC+CGG	-	chr1_1:9854761-9854780	Msa0006870:intron	60.0%
	GACACAGGGCCAGAGAAGGT+AGG	-	chr1_1:9856262-9856281	Msa0006870:intron	60.0%
	CAGGGCCAGAGAAGGTAGGT+AGG	-	chr1_1:9856266-9856285	Msa0006870:intron	60.0%
	GATGACCATTCACCCCTCCC+AGG	-	chr1_1:9857096-9857115	Msa0006870:intron	60.0%
	ACCATTCACCCCTCCCAGGA+TGG	-	chr1_1:9857100-9857119	Msa0006870:intron	60.0%
	TCCATCCTGGGAGGGGTGAA+TGG	+	chr1_1:9857104-9857123	None:intergenic	60.0%
	TTCACCCCTCCCAGGATGGA+TGG	-	chr1_1:9857104-9857123	Msa0006870:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	9852747	9858175	9852747	ID=Msa0006870;Name=Msa0006870
chr1_1	mRNA	9852747	9858175	9852747	ID=Msa0006870-mRNA-1;Parent=Msa0006870;Name=Msa0006870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83\|1\|1\|1\|1\|1\|3\|642\|375
chr1_1	exon	9852747	9853915	9852747	ID=Msa0006870-mRNA-1:exon:3549;Parent=Msa0006870-mRNA-1
chr1_1	exon	9855284	9855784	9855284	ID=Msa0006870-mRNA-1:exon:3548;Parent=Msa0006870-mRNA-1
chr1_1	exon	9857993	9858175	9857993	ID=Msa0006870-mRNA-1:exon:3547;Parent=Msa0006870-mRNA-1
chr1_1	five_prime_UTR	9858093	9858175	9858093	ID=Msa0006870-mRNA-1:five_prime_utr;Parent=Msa0006870-mRNA-1
chr1_1	CDS	9857993	9858092	9857993	ID=Msa0006870-mRNA-1:cds;Parent=Msa0006870-mRNA-1
chr1_1	CDS	9855284	9855784	9855284	ID=Msa0006870-mRNA-1:cds;Parent=Msa0006870-mRNA-1
chr1_1	CDS	9853389	9853915	9853389	ID=Msa0006870-mRNA-1:cds;Parent=Msa0006870-mRNA-1
chr1_1	three_prime_UTR	9852747	9853388	9852747	ID=Msa0006870-mRNA-1:three_prime_utr;Parent=Msa0006870-mRNA-1

Gene Sequence

>Msa0006870

ATGAAGAGTAACTTTCATAGCTCAACCACCATGAATGTGTTCTTGTTTATGTCCTTGCTTTTCTGTTCCACTTTCCATGTCTCCCTCTCACTCATTGATGGACTAGTGGCAAATGGGAATTTTGAGCTTGGTCCAAAACCATCAGAGCTAAAAGGAACAGTGGTAACTGGTGGAAAAAACTCAATACCAGAATGGGAAATATCAGGTTTAGTAGAATACATAAAATCTGGACAAAAACAAGGTGACATGTTACTAGTTGTACCAGAAGGTGCATATGCAGTGAGACTAGGAAATGAAGCATCAATAAAACAAAGAATAAAAGTGATTAAAGGAATGTATTATTCAATAACTTTTATGGTGGCACGTACATGTGCACAAGAAGAAAGAATTAATATATCTGTTGCTCCTGATTTTGGTGTTATTCCTATACAAACATTGTATACAAGTAGTGGTTGGGATCCAATTGCTTATGGTTTTAAAGCTGAATATGATGTTGTTGAAATGGTTATTCATAATCCTGGTGTTGAAGAAGATCCTGCTTGTGGACCTCTTATTGATTCTGTTGCTCTTAGGACTCTATATCCTCCTAAAGCTTCTAATAAGAACATATTAAAAAATGGTGGATTTGAAGAAGGACCTTATATATTCCCTAACACATCATATGGAGTGATCATCCCACCCAATATAGAAGATGACCATTCACCCCTCCCAGGATGGATGGTAGAATCCTTAAAAGCAGTAAAATACCTAGACTCAGGTCATTTCTCAGTTCCACAAGGCACAAGAGCAGTAGAACTAGTGGCAGGAAAAGAGAGTGCAATAGCACAAGTTGCTAGAACAATTCCAGGCAAAACCTATGTCCTCTCATTTTCAGTTGGTGATGCAAGTAATTCATGTGAAGGTTCAATGATTGTTGAAGCTTTTGCTGGTAAAGACACAATTAAGGTTCCTTATTCATCCAAAGGTAAAGGTGGATTCAAACGTGCGGCACTTAAGTTTGTAGCTGTTGGGACAAGAACAAGGGTGATGTTTCTTAGTACTTTTTATAGTATGAGAAGTGATGATCTTTCTTCTCTTTGTGGACCTGTTATTGATGATGTCAAGTTGCTTAGCGTGCGTAAACCATAA

Protein sequence

>Msa0006870

MKSNFHSSTTMNVFLFMSLLFCSTFHVSLSLIDGLVANGNFELGPKPSELKGTVVTGGKNSIPEWEISGLVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITFMVARTCAQEERINISVAPDFGVIPIQTLYTSSGWDPIAYGFKAEYDVVEMVIHNPGVEEDPACGPLIDSVALRTLYPPKASNKNILKNGGFEEGPYIFPNTSYGVIIPPNIEDDHSPLPGWMVESLKAVKYLDSGHFSVPQGTRAVELVAGKESAIAQVARTIPGKTYVLSFSVGDASNSCEGSMIVEAFAGKDTIKVPYSSKGKGGFKRAALKFVAVGTRTRVMFLSTFYSMRSDDLSSLCGPVIDDVKLLSVRKP*