AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1274740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1274740 MtrunA17_Chr8g0341001 83.099 355 3 2 1 298 1 355 0.0 574
Msa1274740 MtrunA17_Chr2g0330781 65.242 351 65 2 4 297 3 353 1.08e-159 449
Msa1274740 MtrunA17_Chr2g0320671 49.577 355 119 4 1 298 1 352 3.70e-112 328
Msa1274740 MtrunA17_Chr4g0027521 41.945 329 132 4 29 298 24 352 3.48e-81 249
Msa1274740 MtrunA17_Chr5g0438621 37.353 340 148 5 10 290 11 344 5.57e-71 223
Msa1274740 MtrunA17_Chr3g0105401 36.628 344 155 5 7 290 3 343 1.61e-68 216
Msa1274740 MtrunA17_Chr5g0438631 34.604 341 157 6 10 290 9 343 2.74e-68 216
Msa1274740 MtrunA17_Chr3g0120861 37.152 323 145 4 30 295 36 357 1.41e-67 214
Msa1274740 MtrunA17_Chr5g0438641 35.535 318 147 3 30 290 30 346 3.65e-67 213
Msa1274740 MtrunA17_Chr1g0156931 36.873 339 154 6 10 290 17 353 3.64e-65 208
Msa1274740 MtrunA17_Chr5g0432101 37.778 315 134 6 32 286 33 345 8.46e-64 205
Msa1274740 MtrunA17_Chr2g0283191 32.845 341 160 7 8 281 14 352 1.01e-60 197
Msa1274740 MtrunA17_Chr8g0371471 34.700 317 149 4 31 290 40 355 7.02e-60 194
Msa1274740 MtrunA17_Chr8g0371491 35.669 314 144 4 30 286 34 346 1.48e-59 194
Msa1274740 MtrunA17_Chr8g0371481 34.591 318 149 5 31 290 40 356 6.85e-58 189
Msa1274740 MtrunA17_Chr5g0405821 35.238 315 144 5 30 285 41 354 7.68e-56 184
Msa1274740 MtrunA17_Chr1g0156921 33.634 333 155 6 10 280 18 346 1.54e-54 181
Msa1274740 MtrunA17_Chr7g0229591 46.970 198 99 2 1 196 1 194 1.77e-54 176
Msa1274740 MtrunA17_Chr3g0142941 35.350 314 144 6 30 286 45 356 2.15e-53 178
Msa1274740 MtrunA17_Chr5g0405831 32.622 328 159 6 19 285 27 353 6.17e-53 177
Msa1274740 MtrunA17_Chr1g0156891 32.479 351 170 8 4 290 10 357 4.97e-52 174
Msa1274740 MtrunA17_Chr3g0142921 32.849 344 166 6 10 290 9 350 1.40e-51 173
Msa1274740 MtrunA17_Chr1g0156911 33.546 313 149 6 31 286 36 346 1.79e-51 173
Msa1274740 MtrunA17_Chr1g0156901 34.069 317 150 5 27 286 45 359 3.15e-51 172
Msa1274740 MtrunA17_Chr4g0046151 43.850 187 104 1 10 196 15 200 7.45e-51 171
Msa1274740 MtrunA17_Chr7g0275021 29.915 351 179 10 4 290 1 348 2.87e-45 157
Msa1274740 MtrunA17_Chr7g0274991 30.233 344 173 9 12 291 8 348 8.24e-45 155
Msa1274740 MtrunA17_Chr2g0285061 32.448 339 158 12 10 286 13 342 1.80e-41 147
Msa1274740 MtrunA17_Chr1g0189891 29.706 340 182 7 12 297 9 345 8.91e-41 145
Msa1274740 MtrunA17_Chr1g0189901 30.721 319 159 8 32 291 31 346 2.15e-40 144
Msa1274740 MtrunA17_Chr6g0457921 31.250 352 172 13 1 290 1 344 4.08e-40 143
Msa1274740 MtrunA17_Chr1g0182811 29.143 350 182 8 4 289 1 348 5.28e-40 143
Msa1274740 MtrunA17_Chr5g0437421 29.503 322 154 7 31 285 31 346 5.78e-40 142
Msa1274740 MtrunA17_Chr8g0380041 32.840 338 159 12 10 286 10 340 1.02e-39 142
Msa1274740 MtrunA17_Chr1g0157001 29.703 303 155 5 37 283 41 341 1.78e-38 139
Msa1274740 MtrunA17_Chr5g0396511 28.344 314 163 7 35 289 49 359 2.13e-38 139
Msa1274740 MtrunA17_Chr4g0027571 36.364 220 82 3 135 297 3 221 2.26e-38 135
Msa1274740 MtrunA17_Chr8g0374101 28.814 354 187 8 1 290 6 358 3.82e-38 138
Msa1274740 MtrunA17_Chr3g0086641 30.769 338 165 11 11 286 17 347 3.98e-38 138
Msa1274740 MtrunA17_Chr4g0008851 27.920 351 189 8 1 290 1 348 3.98e-38 138
Msa1274740 MtrunA17_Chr7g0275011 29.855 345 176 11 4 290 12 348 5.49e-38 137
Msa1274740 MtrunA17_Chr3g0099161 31.378 341 167 13 12 289 71 407 9.55e-38 138
Msa1274740 MtrunA17_Chr7g0275001 28.242 347 182 9 4 290 1 340 1.28e-37 136
Msa1274740 MtrunA17_Chr3g0077571 31.231 333 164 12 11 286 11 335 4.91e-37 135
Msa1274740 MtrunA17_Chr6g0469511 53.846 117 54 0 27 143 25 141 6.89e-36 125
Msa1274740 MtrunA17_Chr4g0060811 30.892 314 155 10 36 290 31 341 7.70e-36 132
Msa1274740 MtrunA17_Chr3g0099151 29.532 342 173 13 12 289 66 403 1.05e-35 132
Msa1274740 MtrunA17_Chr3g0092131 30.499 341 169 12 9 290 6 337 1.54e-35 131
Msa1274740 MtrunA17_Chr7g0215961 26.686 341 173 9 11 290 10 334 3.25e-35 130
Msa1274740 MtrunA17_Chr2g0284941 31.579 323 171 12 7 289 6 318 4.27e-35 130
Msa1274740 MtrunA17_Chr2g0294301 28.882 322 164 8 30 290 33 350 2.47e-34 128
Msa1274740 MtrunA17_Chr2g0284951 30.573 314 149 10 30 286 31 332 7.87e-34 127
Msa1274740 MtrunA17_Chr1g0189931 27.381 336 186 7 12 290 12 346 8.72e-34 126
Msa1274740 MtrunA17_Chr4g0027561 50.000 126 57 2 1 124 1 122 6.38e-33 118
Msa1274740 MtrunA17_Chr3g0099231 29.118 340 174 13 12 289 8 342 6.49e-33 124
Msa1274740 MtrunA17_Chr5g0434621 30.000 340 167 13 12 289 6 336 7.37e-33 124
Msa1274740 MtrunA17_Chr2g0284921 28.963 328 164 9 18 286 20 337 9.52e-33 124
Msa1274740 MtrunA17_Chr4g0017431 27.011 348 185 11 1 286 1 341 1.41e-32 123
Msa1274740 MtrunA17_Chr4g0068441 27.077 325 172 8 30 293 33 353 3.94e-32 122
Msa1274740 MtrunA17_Chr7g0229581 46.400 125 43 2 196 297 31 154 2.06e-30 112
Msa1274740 MtrunA17_Chr2g0284991 30.435 345 167 13 7 289 6 339 2.60e-30 117
Msa1274740 MtrunA17_Chr5g0420811 30.696 316 156 12 30 291 31 337 1.11e-29 115
Msa1274740 MtrunA17_Chr3g0077581 28.660 321 160 10 30 286 34 349 2.32e-29 114
Msa1274740 MtrunA17_Chr2g0301641 28.182 330 167 10 32 297 43 366 3.77e-29 114
Msa1274740 MtrunA17_Chr3g0085881 29.936 314 153 11 30 288 31 332 7.69e-29 113
Msa1274740 MtrunA17_Chr2g0285001 28.994 338 167 13 13 286 9 337 5.49e-28 111
Msa1274740 MtrunA17_Chr8g0380031 29.085 306 166 9 30 287 82 384 4.58e-27 109
Msa1274740 MtrunA17_Chr5g0444401 32.549 255 130 8 4 243 1 228 6.27e-27 108
Msa1274740 MtrunA17_Chr4g0018571 44.355 124 45 2 197 297 55 177 6.43e-26 101
Msa1274740 MtrunA17_Chr8g0370951 27.168 346 184 14 9 289 7 349 7.34e-26 105
Msa1274740 MtrunA17_Chr2g0294311 25.915 355 180 12 10 290 10 355 2.09e-25 103
Msa1274740 MtrunA17_Chr8g0349341 28.481 316 156 13 32 286 37 343 4.58e-25 103
Msa1274740 MtrunA17_Chr8g0344931 26.970 330 162 11 32 298 37 350 1.98e-24 101
Msa1274740 MtrunA17_Chr3g0085231 28.659 328 181 12 9 288 9 331 7.70e-24 99.4
Msa1274740 MtrunA17_Chr8g0370981 25.128 390 190 12 10 297 19 408 1.42e-23 99.8
Msa1274740 MtrunA17_Chr8g0349321 27.129 317 159 13 32 286 37 343 2.64e-23 98.2
Msa1274740 MtrunA17_Chr3g0131321 37.500 152 91 3 29 177 31 181 5.82e-23 97.4
Msa1274740 MtrunA17_Chr8g0349331 29.110 292 155 11 32 286 35 311 6.96e-23 96.7
Msa1274740 MtrunA17_Chr8g0344941 26.168 321 168 10 32 289 41 355 7.29e-22 94.4
Msa1274740 MtrunA17_Chr1g0189921 39.844 128 67 2 12 130 11 137 6.24e-21 87.0
Msa1274740 MtrunA17_Chr4g0027581 34.965 143 47 2 196 293 49 190 6.68e-20 85.9
Msa1274740 MtrunA17_Chr2g0321991 50.000 90 43 2 30 118 31 119 1.96e-19 82.4
Msa1274740 MtrunA17_Chr1g0160031 27.147 361 173 15 9 290 17 366 2.48e-19 87.0
Msa1274740 MtrunA17_Chr6g0455661 44.915 118 57 5 4 118 1 113 3.14e-18 84.7
Msa1274740 MtrunA17_Chr8g0349301 36.735 147 79 5 32 173 37 174 1.99e-17 81.3
Msa1274740 MtrunA17_Chr1g0159991 25.676 370 182 15 1 289 7 364 3.57e-17 80.9
Msa1274740 MtrunA17_Chr4g0018561 57.895 57 24 0 26 82 24 80 4.14e-17 75.5
Msa1274740 MtrunA17_Chr2g0283481 26.171 363 173 16 8 290 26 373 4.59e-17 80.9
Msa1274740 MtrunA17_Chr6g0469521 41.414 99 34 2 196 271 55 152 2.19e-16 74.7
Msa1274740 MtrunA17_Chr1g0159981 24.793 363 186 14 7 289 19 374 5.77e-16 77.4
Msa1274740 MtrunA17_Chr2g0283531 28.060 335 157 16 32 290 31 357 1.56e-15 76.3
Msa1274740 MtrunA17_Chr2g0301581 27.920 351 185 16 1 290 1 344 1.59e-15 75.9
Msa1274740 MtrunA17_Chr2g0301541 26.781 351 189 15 1 290 1 344 2.39e-15 75.5
Msa1274740 MtrunA17_Chr8g0381581 23.200 375 186 14 7 290 9 372 4.26e-15 75.1
Msa1274740 MtrunA17_Chr6g0463261 38.144 97 60 0 82 178 1 97 5.56e-15 70.5
Msa1274740 MtrunA17_Chr7g0273101 25.444 338 168 14 31 290 28 359 9.93e-15 73.9
Msa1274740 MtrunA17_Chr5g0432081 57.143 56 22 2 234 289 10 63 7.27e-14 65.9
Msa1274740 MtrunA17_Chr8g0370971 41.304 92 50 1 31 118 37 128 1.13e-13 67.8
Msa1274740 MtrunA17_Chr2g0308201 44.737 76 41 1 10 85 13 87 4.77e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1274740 AT3G16370.1 62.952 332 64 3 23 297 23 352 3.80e-142 404
Msa1274740 AT5G22810.1 49.091 330 107 4 29 298 31 359 3.32e-105 311
Msa1274740 AT5G03820.1 46.240 359 127 6 4 298 1 357 5.29e-102 303
Msa1274740 AT5G03820.2 47.674 344 119 5 14 298 44 385 8.51e-101 301
Msa1274740 AT5G03810.1 46.705 349 126 5 8 298 7 353 3.01e-100 298
Msa1274740 AT3G53100.1 42.655 354 142 5 1 297 1 350 4.05e-91 275
Msa1274740 AT2G04570.1 36.311 347 159 6 1 290 1 342 1.73e-69 219
Msa1274740 AT2G42990.1 36.909 317 142 6 30 289 26 341 6.12e-67 213
Msa1274740 AT5G42170.1 37.143 315 143 3 30 290 48 361 3.53e-66 211
Msa1274740 AT3G14820.1 36.760 321 139 6 28 290 28 342 2.98e-64 206
Msa1274740 AT5G45960.1 38.462 312 128 7 30 279 45 354 3.32e-63 204
Msa1274740 AT1G20120.1 35.714 322 149 3 26 290 72 392 3.03e-62 202
Msa1274740 AT1G75880.2 36.646 322 146 4 26 290 46 366 6.15e-61 198
Msa1274740 AT4G26790.1 33.841 328 153 5 20 290 23 343 1.55e-60 196
Msa1274740 AT4G26790.2 33.841 328 153 5 20 290 23 343 1.55e-60 196
Msa1274740 AT1G59406.1 34.808 339 164 6 8 290 4 341 1.61e-59 194
Msa1274740 AT1G59030.1 34.808 339 164 6 8 290 4 341 1.61e-59 194
Msa1274740 AT1G58725.1 34.808 339 164 6 8 290 4 341 1.61e-59 194
Msa1274740 AT1G75890.2 35.987 314 142 4 31 286 46 358 2.37e-59 194
Msa1274740 AT1G75880.1 36.533 323 146 5 26 290 46 367 3.82e-59 193
Msa1274740 AT1G75890.3 35.987 314 142 4 31 286 75 387 5.51e-59 194
Msa1274740 AT2G30310.1 33.618 351 150 8 4 281 1 341 5.52e-59 192
Msa1274740 AT1G06990.1 31.988 322 158 4 28 290 33 352 7.82e-59 192
Msa1274740 AT1G58520.3 35.783 313 143 6 30 290 28 334 6.87e-58 189
Msa1274740 AT1G58525.1 35.783 313 143 6 30 290 28 334 6.87e-58 189
Msa1274740 AT3G43570.1 35.577 312 163 6 9 290 9 312 1.47e-57 188
Msa1274740 AT2G30220.1 34.160 363 156 10 4 294 1 352 1.12e-56 187
Msa1274740 AT1G75900.1 33.728 338 165 5 10 290 21 356 1.40e-56 186
Msa1274740 AT1G75890.1 34.557 327 142 5 31 286 46 371 1.13e-55 184
Msa1274740 AT5G45950.1 33.333 315 152 6 30 290 38 348 1.74e-55 183
Msa1274740 AT2G40250.1 33.438 320 147 6 30 286 34 350 6.58e-55 182
Msa1274740 AT2G31540.1 32.665 349 161 9 9 289 8 350 1.05e-54 181
Msa1274740 AT5G63170.1 35.473 296 147 5 30 281 26 321 7.36e-53 176
Msa1274740 AT1G58430.1 34.295 312 143 8 29 280 32 341 1.03e-52 176
Msa1274740 AT2G24560.1 32.836 335 160 7 9 280 8 340 1.67e-51 173
Msa1274740 AT1G20132.1 32.911 316 154 5 31 289 60 374 3.05e-48 165
Msa1274740 AT1G20130.2 30.699 329 163 6 26 290 178 505 5.89e-44 157
Msa1274740 AT1G20130.1 30.699 329 163 6 26 290 198 525 7.23e-44 157
Msa1274740 AT3G04290.1 29.480 346 182 8 4 290 1 343 3.58e-43 152
Msa1274740 AT1G75920.2 30.347 346 171 8 4 290 1 335 2.77e-41 146
Msa1274740 AT1G23500.1 33.131 329 147 6 24 294 27 340 4.64e-41 145
Msa1274740 AT5G18430.1 28.527 319 166 6 32 290 28 344 2.73e-40 144
Msa1274740 AT4G10950.2 29.283 321 163 9 29 289 68 384 2.82e-40 145
Msa1274740 AT3G43550.1 32.443 262 135 4 10 234 8 264 2.99e-40 142
Msa1274740 AT2G24560.2 42.373 177 98 2 9 181 8 184 3.14e-40 142
Msa1274740 AT1G29670.1 32.047 337 162 11 11 286 10 340 3.30e-40 144
Msa1274740 AT1G29670.2 32.047 337 162 11 11 286 78 408 7.93e-40 144
Msa1274740 AT1G20135.1 30.462 325 179 7 1 281 1 322 5.18e-39 140
Msa1274740 AT1G71691.2 33.333 318 148 12 27 286 50 361 7.46e-39 140
Msa1274740 AT1G73610.1 29.560 318 159 7 27 290 30 336 9.42e-39 139
Msa1274740 AT2G23540.1 30.211 331 166 8 32 298 48 377 3.16e-38 139
Msa1274740 AT5G33370.1 31.361 338 161 12 17 290 14 344 4.82e-38 138
Msa1274740 AT4G10950.1 28.972 321 160 10 29 289 68 380 1.50e-37 137
Msa1274740 AT4G28780.1 28.161 348 183 11 9 294 7 349 3.84e-37 135
Msa1274740 AT5G15720.1 31.481 324 152 10 29 288 27 344 1.51e-36 134
Msa1274740 AT1G75910.1 28.818 347 175 7 4 290 1 335 1.52e-36 134
Msa1274740 AT1G29660.1 31.761 318 150 11 30 286 30 341 2.47e-36 134
Msa1274740 AT5G08460.1 27.954 347 179 10 8 286 20 363 3.64e-36 134
Msa1274740 AT1G75920.1 29.014 355 167 9 10 290 2 345 4.75e-36 132
Msa1274740 AT5G41890.1 28.977 352 171 11 9 290 15 357 1.08e-34 129
Msa1274740 AT4G18970.1 30.530 321 157 10 27 286 23 338 3.93e-34 127
Msa1274740 AT5G45670.1 29.240 342 175 11 6 285 2 338 4.58e-34 127
Msa1274740 AT4G18970.2 30.530 321 157 10 27 286 23 338 6.76e-34 128
Msa1274740 AT2G19010.2 28.280 343 177 11 1 286 28 358 1.55e-32 124
Msa1274740 AT5G37690.1 28.060 335 177 10 13 289 10 338 2.31e-32 123
Msa1274740 AT2G19010.1 28.485 330 168 10 13 286 11 328 2.96e-32 122
Msa1274740 AT1G71250.1 30.408 319 154 11 30 286 39 351 3.93e-32 122
Msa1274740 AT2G19060.1 30.599 317 148 13 29 286 27 330 5.22e-32 122
Msa1274740 AT5G33370.2 40.116 172 92 4 17 182 14 180 2.10e-31 120
Msa1274740 AT1G74460.1 29.299 314 160 10 36 290 27 337 2.51e-31 120
Msa1274740 AT1G33811.1 29.969 327 158 12 26 286 28 349 1.09e-30 119
Msa1274740 AT2G19050.1 29.073 313 154 12 30 286 29 329 1.31e-29 115
Msa1274740 AT1G75930.1 25.862 348 184 7 4 290 1 335 3.70e-29 114
Msa1274740 AT4G16230.1 39.735 151 88 2 30 179 28 176 6.43e-29 111
Msa1274740 AT5G37690.2 27.761 335 170 11 13 289 10 330 1.36e-28 112
Msa1274740 AT1G71691.3 34.711 242 119 9 27 233 50 287 2.65e-28 111
Msa1274740 AT1G75920.3 26.879 346 152 9 4 290 1 304 3.06e-28 111
Msa1274740 AT5G55050.1 28.308 325 166 12 30 290 37 358 7.86e-28 111
Msa1274740 AT3G50400.1 38.889 180 104 5 9 183 10 188 2.83e-27 109
Msa1274740 AT5G15720.2 32.794 247 121 7 29 234 27 269 1.00e-26 107
Msa1274740 AT1G75920.4 28.136 295 142 8 55 290 24 307 3.48e-26 105
Msa1274740 AT1G53920.1 28.249 354 179 13 9 293 17 364 1.24e-25 105
Msa1274740 AT1G53940.2 26.703 367 191 12 5 298 3 364 2.97e-25 103
Msa1274740 AT4G30140.1 28.115 313 155 12 31 287 32 330 9.70e-25 102
Msa1274740 AT5G40990.1 27.190 331 172 10 32 298 37 362 6.91e-24 100
Msa1274740 AT1G71120.1 28.037 321 160 12 30 289 29 339 7.47e-24 100
Msa1274740 AT2G19050.2 28.571 266 144 10 8 238 7 261 3.36e-22 94.0
Msa1274740 AT3G14225.1 25.526 333 179 10 32 298 37 366 1.44e-20 90.9
Msa1274740 AT3G14225.2 25.982 331 176 11 32 298 37 362 4.46e-20 89.7
Msa1274740 AT1G53940.1 32.195 205 123 7 5 197 3 203 8.01e-20 88.2
Msa1274740 AT4G16220.1 43.697 119 61 4 1 118 1 114 7.78e-19 84.3
Msa1274740 AT2G31550.1 25.701 214 90 6 139 289 2 209 9.93e-19 83.2
Msa1274740 AT2G03980.2 25.962 312 173 11 31 286 42 351 1.21e-18 85.5
Msa1274740 AT2G03980.3 25.962 312 173 11 31 286 42 351 1.21e-18 85.5
Msa1274740 AT2G03980.1 25.962 312 173 11 31 286 42 351 1.21e-18 85.5
Msa1274740 AT2G03980.4 25.962 312 173 11 31 286 42 351 1.21e-18 85.5
Msa1274740 AT1G28610.2 27.500 360 167 17 9 290 14 357 1.72e-18 85.1
Msa1274740 AT2G04020.1 41.593 113 63 3 31 141 42 153 2.73e-18 82.8
Msa1274740 AT2G04020.2 41.593 113 63 3 31 141 42 153 5.59e-18 83.2
Msa1274740 AT1G53990.1 24.425 348 182 12 10 287 7 343 8.64e-18 83.2
Msa1274740 AT1G28650.1 26.197 355 183 15 10 290 15 364 1.83e-17 82.4
Msa1274740 AT1G28580.1 25.978 358 176 15 9 290 20 364 3.03e-17 81.6
Msa1274740 AT1G71691.1 28.287 251 118 10 94 286 14 260 9.56e-17 79.0
Msa1274740 AT1G28570.1 26.027 365 181 15 9 290 3 361 1.57e-16 79.7
Msa1274740 AT1G67830.1 25.000 348 169 14 25 289 23 361 3.49e-16 78.6
Msa1274740 AT1G28600.1 25.000 360 176 17 9 290 14 357 9.26e-16 77.4
Msa1274740 AT1G28670.1 25.000 356 187 12 10 290 13 363 1.40e-15 76.6
Msa1274740 AT2G27360.1 23.967 363 190 12 9 296 16 367 3.65e-15 75.5
Msa1274740 AT1G28600.2 27.679 224 127 12 9 213 14 221 1.26e-12 66.2
Msa1274740 AT1G31550.2 36.552 145 67 7 9 141 19 150 2.31e-12 67.4
Msa1274740 AT1G31550.1 36.552 145 67 7 9 141 19 150 2.31e-12 67.4
Msa1274740 AT1G28610.1 32.927 164 85 9 32 180 31 184 9.72e-12 64.3
Msa1274740 AT3G14220.1 28.824 170 100 6 31 196 31 183 3.75e-11 63.5

Find 60 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAGTTCCTAGTGATTT+TGG 0.126371 8_3:+8586796 None:intergenic
CCTGCTGCAAGGACTTTATT+TGG 0.195553 8_3:-8587282 Msa1274740:intron
TATTCTAACTGTTGGGATAA+TGG 0.256406 8_3:+8587714 None:intergenic
GGCAAGTTGGCTCAGGTTGC+TGG 0.317149 8_3:-8587675 Msa1274740:CDS
ATGCAACTCAGTATGTGTTT+TGG 0.323360 8_3:-8586771 Msa1274740:CDS
GCTGATAACTTAATTATTGC+CGG 0.335224 8_3:-8586709 Msa1274740:CDS
CAGTGTATGCTCAGTATATA+TGG 0.344117 8_3:+8589233 None:intergenic
AACTTTGCTTCAGCTGCATC+TGG 0.352556 8_3:-8588363 Msa1274740:CDS
TCAGGTTGCTGGCAGTAAAA+AGG 0.357625 8_3:-8587664 Msa1274740:CDS
AAGGCTAATTACCCTCCTTA+TGG 0.370041 8_3:-8589021 Msa1274740:CDS
TCAGGGAAGAACCTCCTTCT+TGG 0.388520 8_3:-8588390 Msa1274740:CDS
AATCTTCAAAAGCAACTTCC+TGG 0.397330 8_3:-8587180 Msa1274740:intron
TATCTTAGTCCACAGGCATC+AGG 0.401048 8_3:-8588408 Msa1274740:CDS
CCTTGAAATATTCTAACTGT+TGG 0.403529 8_3:+8587706 None:intergenic
GTACCAGCTATCATAACATT+TGG 0.405659 8_3:-8589093 Msa1274740:CDS
CTTGAAATATTCTAACTGTT+GGG 0.411275 8_3:+8587707 None:intergenic
GGGAAAGGGTGCTGTGGTAC+AGG 0.417817 8_3:-8586850 Msa1274740:CDS
GTGCAAAGCTACCACAAGTT+AGG 0.425459 8_3:+8589127 None:intergenic
TTAGTAAAATCTCTACCATA+AGG 0.435286 8_3:+8589006 None:intergenic
CCAACAGTTAGAATATTTCA+AGG 0.438731 8_3:-8587706 Msa1274740:CDS
CCATGATTGCATTTCATATG+TGG 0.438969 8_3:+8586427 None:intergenic
AAAATTATTATACCAATCCT+TGG 0.441731 8_3:-8587581 Msa1274740:CDS
CCGAAAATGACACGTATTGA+AGG 0.454561 8_3:+8589261 None:intergenic
TTTACTAATAAACAACCTAC+TGG 0.460660 8_3:-8588991 Msa1274740:CDS
TTATTTGGTTACCATGAGAA+TGG 0.467168 8_3:-8587267 Msa1274740:CDS
TCTTTGTATGTATTGAGTGC+TGG 0.485192 8_3:-8587621 Msa1274740:CDS
GGCATAGCTCTTATCACATA+AGG 0.485525 8_3:-8586688 Msa1274740:exon
TGCATCTGGTTATGATGAAA+AGG 0.486563 8_3:-8588349 Msa1274740:CDS
GAATATTTCAAGGAATATCA+AGG 0.486768 8_3:-8587696 Msa1274740:CDS
CCACATATGAAATGCAATCA+TGG 0.498015 8_3:-8586427 Msa1274740:three_prime_UTR
TCACCAAATGTTATGATAGC+TGG 0.498295 8_3:+8589090 None:intergenic
AAAGGCTGCATCTATTATCA+AGG 0.521328 8_3:-8587646 Msa1274740:CDS
CAAGGAATATCAAGGCAAGT+TGG 0.527876 8_3:-8587688 Msa1274740:CDS
ATATCAAGGCAAGTTGGCTC+AGG 0.531855 8_3:-8587682 Msa1274740:CDS
TTATGTGATAAGAGCTATGC+CGG 0.533000 8_3:+8586690 None:intergenic
GGTGACTCTGCAGTAGATGT+AGG 0.538565 8_3:-8589072 Msa1274740:CDS
GCCTGTGGACTAAGATATGC+AGG 0.541888 8_3:+8588414 None:intergenic
TGCTTGGTTGATCCAAGGAT+TGG 0.542337 8_3:+8587569 None:intergenic
ACTGATCAACAGTGATTGCT+TGG 0.542659 8_3:+8587553 None:intergenic
TTGCAATGGCAAGTTAGCTA+CGG 0.548669 8_3:-8588962 Msa1274740:CDS
GTGATTGCTTGGTTGATCCA+AGG 0.549428 8_3:+8587564 None:intergenic
GTATCTTGCTTCCTAACTTG+TGG 0.552323 8_3:-8589138 Msa1274740:CDS
AGGTTCTTCCCTGATGCCTG+TGG 0.556382 8_3:+8588399 None:intergenic
AAGCAAAGTTAGCACCAAGA+AGG 0.572551 8_3:+8588376 None:intergenic
ACCTGCATATCTTAGTCCAC+AGG 0.573584 8_3:-8588415 Msa1274740:CDS
ACTTGATTAGCAGCTTCTGA+AGG 0.575330 8_3:+8586736 None:intergenic
TTGCGACACAACCATTCTCA+TGG 0.578404 8_3:+8587256 None:intergenic
GTAAAATCTCTACCATAAGG+AGG 0.579599 8_3:+8589009 None:intergenic
ATCTTAGTCCACAGGCATCA+GGG 0.598385 8_3:-8588407 Msa1274740:CDS
TTGTGCAATCCAAAATCACT+AGG 0.603517 8_3:-8586805 Msa1274740:CDS
CAAAGTTAGCACCAAGAAGG+AGG 0.606423 8_3:+8588379 None:intergenic
TAAAATCTCTACCATAAGGA+GGG 0.614379 8_3:+8589010 None:intergenic
CCATTGCAAAACCTCCCAGT+AGG 0.621346 8_3:+8588976 None:intergenic
TTACTAATAAACAACCTACT+GGG 0.623210 8_3:-8588990 Msa1274740:CDS
AGAATCAACACTGATGCACA+AGG 0.629785 8_3:-8587234 Msa1274740:CDS
CTAATAAACAACCTACTGGG+AGG 0.651293 8_3:-8588987 Msa1274740:CDS
GAGGCAGGGAAAGGGTGCTG+TGG 0.662542 8_3:-8586856 Msa1274740:CDS
AAAATGACACGTATTGAAGG+AGG 0.671205 8_3:+8589264 None:intergenic
CACGTATTGAAGGAGGAAGG+TGG 0.679092 8_3:+8589271 None:intergenic
TGACACGTATTGAAGGAGGA+AGG 0.690350 8_3:+8589268 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGTTTTTTTCAATTA+AGG - chr8_3:8587581-8587600 Msa1274740:CDS 10.0%
!! GTTTACAATTAGTTATTAAA+TGG - chr8_3:8587817-8587836 Msa1274740:intron 15.0%
!! AGTTCAAACATAATATATAT+AGG + chr8_3:8587885-8587904 None:intergenic 15.0%
!! AAAAATTTGATATACTACTT+AGG + chr8_3:8588258-8588277 None:intergenic 15.0%
!! GTATTGTATCCTTTATTATA+TGG - chr8_3:8586803-8586822 Msa1274740:CDS 20.0%
!!! ACTAGTTTATAAGTATGAAA+TGG - chr8_3:8587533-8587552 Msa1274740:intron 20.0%
!! ACTATTTGAATTAAGCTATA+AGG - chr8_3:8587644-8587663 Msa1274740:CDS 20.0%
!!! TTTTGTTATGAACTTGTTTT+TGG - chr8_3:8587928-8587947 Msa1274740:intron 20.0%
!! AAAATTATTATACCAATCCT+TGG - chr8_3:8588110-8588129 Msa1274740:intron 20.0%
!! ACATATTTCAGTTTATCTAA+TGG + chr8_3:8588284-8588303 None:intergenic 20.0%
!! TGCAATAACAAAATCAATTT+AGG + chr8_3:8588645-8588664 None:intergenic 20.0%
!! CTATATAGAACATCATAAAA+AGG + chr8_3:8588807-8588826 None:intergenic 20.0%
!!! CTTTTTATGATGTTCTATAT+AGG - chr8_3:8588805-8588824 Msa1274740:intron 20.0%
!!! AAAATGTACTGTACTATTTT+TGG - chr8_3:8589224-8589243 Msa1274740:five_prime_UTR 20.0%
!!! TAATTAGCCTTAAAAAGAGT+AGG + chr8_3:8586661-8586680 None:intergenic 25.0%
! TTAGTAAAATCTCTACCATA+AGG + chr8_3:8586688-8586707 None:intergenic 25.0%
! TTTACTAATAAACAACCTAC+TGG - chr8_3:8586700-8586719 Msa1274740:CDS 25.0%
! TTACTAATAAACAACCTACT+GGG - chr8_3:8586701-8586720 Msa1274740:CDS 25.0%
! TTCAAATAAATCTTAGTCGT+TGG + chr8_3:8586911-8586930 None:intergenic 25.0%
! AACGACTAAGATTTATTTGA+AGG - chr8_3:8586910-8586929 Msa1274740:intron 25.0%
! ACGACTAAGATTTATTTGAA+GGG - chr8_3:8586911-8586930 Msa1274740:intron 25.0%
! AAATGTATCGTAGATTTGAT+TGG - chr8_3:8586964-8586983 Msa1274740:intron 25.0%
! CATATAAGTTTCATTGATGT+TGG - chr8_3:8587208-8587227 Msa1274740:CDS 25.0%
!!! GTAGAGTTTTGTAAAATTAG+CGG - chr8_3:8587506-8587525 Msa1274740:intron 25.0%
!!! TTTTTTCAATTAAGGCTACA+AGG - chr8_3:8587589-8587608 Msa1274740:CDS 25.0%
!!! TTTTTCAATTAAGGCTACAA+GGG - chr8_3:8587590-8587609 Msa1274740:CDS 25.0%
! AAGCTATAAGTTCAAATATG+TGG - chr8_3:8587677-8587696 Msa1274740:CDS 25.0%
! TGTTTGAACTTATATCTGTT+TGG - chr8_3:8587895-8587914 Msa1274740:intron 25.0%
! CTTGAAATATTCTAACTGTT+GGG + chr8_3:8587987-8588006 None:intergenic 25.0%
! GAATATTTCAAGGAATATCA+AGG - chr8_3:8587995-8588014 Msa1274740:intron 25.0%
!!! CCACTTTTATCTCAAATTAA+CGG - chr8_3:8588609-8588628 Msa1274740:intron 25.0%
! TATTATCTTGTCCTTATGTT+GGG + chr8_3:8588753-8588772 None:intergenic 25.0%
! TTATTATCTTGTCCTTATGT+TGG + chr8_3:8588754-8588773 None:intergenic 25.0%
! TCAGTAAAAATAGGAAACTT+TGG + chr8_3:8589100-8589119 None:intergenic 25.0%
! CTAGAATCATCAGTAAAAAT+AGG + chr8_3:8589109-8589128 None:intergenic 25.0%
!!! CTATTTTTGGTAGTTTGTTT+TGG - chr8_3:8589237-8589256 Msa1274740:five_prime_UTR 25.0%
! TGTTCTTCATTTTCTGCTTT+TGG + chr8_3:8586501-8586520 None:intergenic 30.0%
! TTACCTTCCTACTCTTTTTA+AGG - chr8_3:8586651-8586670 Msa1274740:three_prime_UTR 30.0%
TAAAATCTCTACCATAAGGA+GGG + chr8_3:8586684-8586703 None:intergenic 30.0%
CATGGAAGACCATATAATAA+AGG + chr8_3:8586815-8586834 None:intergenic 30.0%
ACATTGAGATTTCAATGAAG+AGG + chr8_3:8586838-8586857 None:intergenic 30.0%
CTTCATTGAAATCTCAATGT+TGG - chr8_3:8586838-8586857 Msa1274740:CDS 30.0%
!! TCAATGTTGGTTTAACCTAA+CGG - chr8_3:8586851-8586870 Msa1274740:CDS 30.0%
CGACTAAGATTTATTTGAAG+GGG - chr8_3:8586912-8586931 Msa1274740:intron 30.0%
TAAGATTTATTTGAAGGGGA+TGG - chr8_3:8586916-8586935 Msa1274740:intron 30.0%
GCTTTCTTTCTTAAATCTAG+TGG - chr8_3:8587100-8587119 Msa1274740:intron 30.0%
CCACTATAAGCTAACTTATT+AGG + chr8_3:8587450-8587469 None:intergenic 30.0%
! CCTAATAAGTTAGCTTATAG+TGG - chr8_3:8587447-8587466 Msa1274740:intron 30.0%
GAATTAAGCTATAAGGCATA+AGG - chr8_3:8587651-8587670 Msa1274740:CDS 30.0%
!!! TGTTTTTGGTTTCTTCCTAT+TGG - chr8_3:8587942-8587961 Msa1274740:intron 30.0%
TATTCTAACTGTTGGGATAA+TGG + chr8_3:8587980-8587999 None:intergenic 30.0%
CCTTGAAATATTCTAACTGT+TGG + chr8_3:8587988-8588007 None:intergenic 30.0%
CCAACAGTTAGAATATTTCA+AGG - chr8_3:8587985-8588004 Msa1274740:intron 30.0%
!! CTCATTCACAAGCTTTATTA+AGG - chr8_3:8588180-8588199 Msa1274740:intron 30.0%
TCAACAAAGAACCAACATTA+GGG + chr8_3:8588319-8588338 None:intergenic 30.0%
TTCAACAAAGAACCAACATT+AGG + chr8_3:8588320-8588339 None:intergenic 30.0%
TTATTTGGTTACCATGAGAA+TGG - chr8_3:8588424-8588443 Msa1274740:CDS 30.0%
AAAATCACAATCTTTAGACC+AGG + chr8_3:8588532-8588551 None:intergenic 30.0%
!!! AATTTGAAGGGTTTTGAACA+AGG + chr8_3:8588579-8588598 None:intergenic 30.0%
GTTCAAAACCCTTCAAATTT+CGG - chr8_3:8588580-8588599 Msa1274740:intron 30.0%
! CCGTTAATTTGAGATAAAAG+TGG + chr8_3:8588612-8588631 None:intergenic 30.0%
! AAATCAATTTAGGATGACCT+CGG + chr8_3:8588635-8588654 None:intergenic 30.0%
TAATATGAACTGTCTGATCT+TGG - chr8_3:8588665-8588684 Msa1274740:intron 30.0%
CATAAGGACAAGATAATAAC+TGG - chr8_3:8588755-8588774 Msa1274740:intron 30.0%
GCTGATAACTTAATTATTGC+CGG - chr8_3:8588982-8589001 Msa1274740:CDS 30.0%
AAAATGACACGTATTGAAGG+AGG + chr8_3:8586430-8586449 None:intergenic 35.0%
!!! CCTTCAATACGTGTCATTTT+CGG - chr8_3:8586430-8586449 Msa1274740:three_prime_UTR 35.0%
!!! CTTCAATACGTGTCATTTTC+GGG - chr8_3:8586431-8586450 Msa1274740:three_prime_UTR 35.0%
CAGTGTATGCTCAGTATATA+TGG + chr8_3:8586461-8586480 None:intergenic 35.0%
GTACCAGCTATCATAACATT+TGG - chr8_3:8586598-8586617 Msa1274740:three_prime_UTR 35.0%
TCACCAAATGTTATGATAGC+TGG + chr8_3:8586604-8586623 None:intergenic 35.0%
! TAGCCTTAAAAAGAGTAGGA+AGG + chr8_3:8586657-8586676 None:intergenic 35.0%
GTAAAATCTCTACCATAAGG+AGG + chr8_3:8586685-8586704 None:intergenic 35.0%
! AAGTTAGCTACGGATTTTAC+AGG - chr8_3:8586739-8586758 Msa1274740:CDS 35.0%
GAATTGAAATATCAGCCGTT+AGG + chr8_3:8586869-8586888 None:intergenic 35.0%
TTTATTTGAAGGGGATGGAA+AGG - chr8_3:8586921-8586940 Msa1274740:intron 35.0%
ACGATACATTTCCACAAGAT+TGG + chr8_3:8587004-8587023 None:intergenic 35.0%
GTGGAAATGTATCGTAGATT+TGG + chr8_3:8586960-8586979 None:intergenic 35.0%
CGATACATTTCCACAAGATT+TGG - chr8_3:8587005-8587024 Msa1274740:intron 35.0%
! TTCCACAAGATTTGGTTGAA+TGG - chr8_3:8587013-8587032 Msa1274740:intron 35.0%
! AAGATTTGGTTGAATGGACT+TGG - chr8_3:8587019-8587038 Msa1274740:intron 35.0%
GCGTATCTCTCTAAATGTAA+CGG + chr8_3:8587082-8587101 None:intergenic 35.0%
! GATCCTCTTCATCTGAAATA+CGG + chr8_3:8587143-8587162 None:intergenic 35.0%
TGCATCTGGTTATGATGAAA+AGG - chr8_3:8587342-8587361 Msa1274740:intron 35.0%
AGTTTCAATAAGGGTCAGTT+TGG + chr8_3:8587707-8587726 None:intergenic 35.0%
! CGGCTTGATAGTTTCAATAA+GGG + chr8_3:8587716-8587735 None:intergenic 35.0%
! ACGGCTTGATAGTTTCAATA+AGG + chr8_3:8587717-8587736 None:intergenic 35.0%
AGGAGAAATCAAGTTACTAG+AGG + chr8_3:8587865-8587884 None:intergenic 35.0%
AAAGGCTGCATCTATTATCA+AGG - chr8_3:8588045-8588064 Msa1274740:intron 35.0%
TCTTTGTATGTATTGAGTGC+TGG - chr8_3:8588070-8588089 Msa1274740:intron 35.0%
AATGCAAACAACCCTAATGT+TGG - chr8_3:8588305-8588324 Msa1274740:intron 35.0%
AATCTTCAAAAGCAACTTCC+TGG - chr8_3:8588511-8588530 Msa1274740:intron 35.0%
! TTTTGAACAAGGTCAAAGAG+AGG + chr8_3:8588568-8588587 None:intergenic 35.0%
!!! AATGTTTTTTCTCCACTGCA+CGG - chr8_3:8588718-8588737 Msa1274740:intron 35.0%
! GTTCTATATAGGTTTTGCTG+AGG - chr8_3:8588816-8588835 Msa1274740:intron 35.0%
TTGTGCAATCCAAAATCACT+AGG - chr8_3:8588886-8588905 Msa1274740:intron 35.0%
! GAACAAGTTCCTAGTGATTT+TGG + chr8_3:8588898-8588917 None:intergenic 35.0%
! ATGCAACTCAGTATGTGTTT+TGG - chr8_3:8588920-8588939 Msa1274740:intron 35.0%
! TGCAACTCAGTATGTGTTTT+GGG - chr8_3:8588921-8588940 Msa1274740:intron 35.0%
TTATGTGATAAGAGCTATGC+CGG + chr8_3:8589004-8589023 None:intergenic 35.0%
CCATGATTGCATTTCATATG+TGG + chr8_3:8589267-8589286 None:intergenic 35.0%
CCACATATGAAATGCAATCA+TGG - chr8_3:8589264-8589283 Msa1274740:five_prime_UTR 35.0%
CCGAAAATGACACGTATTGA+AGG + chr8_3:8586433-8586452 None:intergenic 40.0%
GTATCTTGCTTCCTAACTTG+TGG - chr8_3:8586553-8586572 Msa1274740:three_prime_UTR 40.0%
AAGGCTAATTACCCTCCTTA+TGG - chr8_3:8586670-8586689 Msa1274740:three_prime_UTR 40.0%
CTAATAAACAACCTACTGGG+AGG - chr8_3:8586704-8586723 Msa1274740:CDS 40.0%
TTGCAATGGCAAGTTAGCTA+CGG - chr8_3:8586729-8586748 Msa1274740:CDS 40.0%
GAGATTTCAATGAAGAGGCA+TGG + chr8_3:8586833-8586852 None:intergenic 40.0%
CATTTCCACAAGATTGGACT+TGG + chr8_3:8586949-8586968 None:intergenic 40.0%
GTCCATTCAACCAAATCTTG+TGG + chr8_3:8587018-8587037 None:intergenic 40.0%
!! AATACGGTGCTACAGCAATA+GGG + chr8_3:8587127-8587146 None:intergenic 40.0%
!! AAATACGGTGCTACAGCAAT+AGG + chr8_3:8587128-8587147 None:intergenic 40.0%
! TCTTTTGCAGCTGAAACACT+TGG - chr8_3:8587238-8587257 Msa1274740:CDS 40.0%
! CTTTTGCAGCTGAAACACTT+GGG - chr8_3:8587239-8587258 Msa1274740:CDS 40.0%
AAGCAAAGTTAGCACCAAGA+AGG + chr8_3:8587318-8587337 None:intergenic 40.0%
GACGTTATTTAAGTCGTGCT+TGG - chr8_3:8587408-8587427 Msa1274740:intron 40.0%
!! TATAGTGGATGAGCTGATAG+CGG - chr8_3:8587462-8587481 Msa1274740:intron 40.0%
CAAGGAATATCAAGGCAAGT+TGG - chr8_3:8588003-8588022 Msa1274740:intron 40.0%
ACTGATCAACAGTGATTGCT+TGG + chr8_3:8588141-8588160 None:intergenic 40.0%
AGCTTGTGAATGAGTCTAAC+AGG + chr8_3:8588174-8588193 None:intergenic 40.0%
! TTGGTTCTTTGTTGAAACGC+AGG - chr8_3:8588324-8588343 Msa1274740:intron 40.0%
TGGTTCTTTGTTGAAACGCA+GGG - chr8_3:8588325-8588344 Msa1274740:intron 40.0%
GGATTAGGAGCTAGGAAAAT+TGG - chr8_3:8588355-8588374 Msa1274740:CDS 40.0%
AGAATCAACACTGATGCACA+AGG - chr8_3:8588457-8588476 Msa1274740:intron 40.0%
TTATCTCAAATTAACGGCCG+AGG - chr8_3:8588615-8588634 Msa1274740:intron 40.0%
! TATATAGGTTTTGCTGAGGC+AGG - chr8_3:8588820-8588839 Msa1274740:intron 40.0%
! ATATAGGTTTTGCTGAGGCA+GGG - chr8_3:8588821-8588840 Msa1274740:intron 40.0%
ACTTGATTAGCAGCTTCTGA+AGG + chr8_3:8588958-8588977 None:intergenic 40.0%
GGCATAGCTCTTATCACATA+AGG - chr8_3:8589003-8589022 Msa1274740:CDS 40.0%
TGACACGTATTGAAGGAGGA+AGG + chr8_3:8586426-8586445 None:intergenic 45.0%
GTGCAAAGCTACCACAAGTT+AGG + chr8_3:8586567-8586586 None:intergenic 45.0%
AGGATCCAAGTCCAATCTTG+TGG - chr8_3:8586941-8586960 Msa1274740:intron 45.0%
TAACAACGCTGCTGGTATAG+AGG + chr8_3:8587047-8587066 None:intergenic 45.0%
GCACCGTATTTCAGATGAAG+AGG - chr8_3:8587137-8587156 Msa1274740:intron 45.0%
ATCCAAGTCCTACCTAAGGT+TGG - chr8_3:8587160-8587179 Msa1274740:intron 45.0%
CATCTACTCCAACCTTAGGT+AGG + chr8_3:8587171-8587190 None:intergenic 45.0%
GCAACATCTACTCCAACCTT+AGG + chr8_3:8587175-8587194 None:intergenic 45.0%
ACCTGCATATCTTAGTCCAC+AGG - chr8_3:8587276-8587295 Msa1274740:intron 45.0%
TATCTTAGTCCACAGGCATC+AGG - chr8_3:8587283-8587302 Msa1274740:intron 45.0%
ATCTTAGTCCACAGGCATCA+GGG - chr8_3:8587284-8587303 Msa1274740:intron 45.0%
CAAAGTTAGCACCAAGAAGG+AGG + chr8_3:8587315-8587334 None:intergenic 45.0%
AACTTTGCTTCAGCTGCATC+TGG - chr8_3:8587328-8587347 Msa1274740:intron 45.0%
TGGAATTGCATGCTGCCAAT+AGG + chr8_3:8587960-8587979 None:intergenic 45.0%
! ATATCAAGGCAAGTTGGCTC+AGG - chr8_3:8588009-8588028 Msa1274740:intron 45.0%
! TCAGGTTGCTGGCAGTAAAA+AGG - chr8_3:8588027-8588046 Msa1274740:intron 45.0%
TGCTTGGTTGATCCAAGGAT+TGG + chr8_3:8588125-8588144 None:intergenic 45.0%
GTGATTGCTTGGTTGATCCA+AGG + chr8_3:8588130-8588149 None:intergenic 45.0%
ATAAAGTCCTTGCAGCAGGT+AGG + chr8_3:8588408-8588427 None:intergenic 45.0%
CCAAATAAAGTCCTTGCAGC+AGG + chr8_3:8588412-8588431 None:intergenic 45.0%
CCTGCTGCAAGGACTTTATT+TGG - chr8_3:8588409-8588428 Msa1274740:CDS 45.0%
TTGCGACACAACCATTCTCA+TGG + chr8_3:8588438-8588457 None:intergenic 45.0%
GGTGCGTACCGAAATTTGAA+GGG + chr8_3:8588591-8588610 None:intergenic 45.0%
TGGTGCGTACCGAAATTTGA+AGG + chr8_3:8588592-8588611 None:intergenic 45.0%
! TTACGCGCAGTTTTCGATCT+CGG + chr8_3:8588699-8588718 None:intergenic 45.0%
TTTCTCCACTGCACGGTATT+CGG - chr8_3:8588725-8588744 Msa1274740:intron 45.0%
GGTATTCGGATCCCAACATA+AGG - chr8_3:8588739-8588758 Msa1274740:intron 45.0%
!!! AATTTTCAAAAAAATTAAAA+CGG + chr8_3:8587736-8587755 None:intergenic 5.0%
CACGTATTGAAGGAGGAAGG+TGG + chr8_3:8586423-8586442 None:intergenic 50.0%
GGTGACTCTGCAGTAGATGT+AGG - chr8_3:8586619-8586638 Msa1274740:three_prime_UTR 50.0%
CCATTGCAAAACCTCCCAGT+AGG + chr8_3:8586718-8586737 None:intergenic 50.0%
! CCTACTGGGAGGTTTTGCAA+TGG - chr8_3:8586715-8586734 Msa1274740:CDS 50.0%
TACAGCTGTAACAACGCTGC+TGG + chr8_3:8587055-8587074 None:intergenic 50.0%
AGCAGCGTTGTTACAGCTGT+AGG - chr8_3:8587054-8587073 Msa1274740:intron 50.0%
GAGGATCCAAGTCCTACCTA+AGG - chr8_3:8587156-8587175 Msa1274740:intron 50.0%
CTCCAACCTTAGGTAGGACT+TGG + chr8_3:8587165-8587184 None:intergenic 50.0%
! GCCTGTGGACTAAGATATGC+AGG + chr8_3:8587280-8587299 None:intergenic 50.0%
TCAGGGAAGAACCTCCTTCT+TGG - chr8_3:8587301-8587320 Msa1274740:intron 50.0%
!! GCGTGTATGGATTAGGAGCT+AGG - chr8_3:8588347-8588366 Msa1274740:CDS 50.0%
AGTGACCTCACTTCCACCAT+TGG - chr8_3:8588378-8588397 Msa1274740:CDS 50.0%
GTGACCTCACTTCCACCATT+GGG - chr8_3:8588379-8588398 Msa1274740:CDS 50.0%
! GTTTTGCTGAGGCAGGGAAA+GGG - chr8_3:8588827-8588846 Msa1274740:intron 50.0%
AGGTTCTTCCCTGATGCCTG+TGG + chr8_3:8587295-8587314 None:intergenic 55.0%
GTTGAAACGCAGGGCGTGTA+TGG - chr8_3:8588334-8588353 Msa1274740:intron 55.0%
ACGCAGGGCGTGTATGGATT+AGG - chr8_3:8588340-8588359 Msa1274740:CDS 55.0%
! GCAACCCAATGGTGGAAGTG+AGG + chr8_3:8588386-8588405 None:intergenic 55.0%
! GGTTTTGCTGAGGCAGGGAA+AGG - chr8_3:8588826-8588845 Msa1274740:intron 55.0%
! GGCAAGTTGGCTCAGGTTGC+TGG - chr8_3:8588016-8588035 Msa1274740:intron 60.0%
GCAGGTAGGCAACCCAATGG+TGG + chr8_3:8588394-8588413 None:intergenic 60.0%
GCAGCAGGTAGGCAACCCAA+TGG + chr8_3:8588397-8588416 None:intergenic 60.0%
TGGGTTGCCTACCTGCTGCA+AGG - chr8_3:8588398-8588417 Msa1274740:CDS 60.0%
GGGATCCGAATACCGTGCAG+TGG + chr8_3:8588733-8588752 None:intergenic 60.0%
!! GGGAAAGGGTGCTGTGGTAC+AGG - chr8_3:8588841-8588860 Msa1274740:intron 60.0%
!! GAGGCAGGGAAAGGGTGCTG+TGG - chr8_3:8588835-8588854 Msa1274740:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 8586413 8589300 8586413 ID=Msa1274740;Name=Msa1274740
chr8_3 mRNA 8586413 8589300 8586413 ID=Msa1274740-mRNA-1;Parent=Msa1274740;Name=Msa1274740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|0.5|0.6|1|0.75|0.8|5|277|298
chr8_3 exon 8586413 8586886 8586413 ID=Msa1274740-mRNA-1:exon:3567;Parent=Msa1274740-mRNA-1
chr8_3 exon 8587181 8587293 8587181 ID=Msa1274740-mRNA-1:exon:3566;Parent=Msa1274740-mRNA-1
chr8_3 exon 8587540 8587745 8587540 ID=Msa1274740-mRNA-1:exon:3565;Parent=Msa1274740-mRNA-1
chr8_3 exon 8588335 8588465 8588335 ID=Msa1274740-mRNA-1:exon:3564;Parent=Msa1274740-mRNA-1
chr8_3 exon 8588953 8589300 8588953 ID=Msa1274740-mRNA-1:exon:3563;Parent=Msa1274740-mRNA-1
chr8_3 five_prime_UTR 8589203 8589300 8589203 ID=Msa1274740-mRNA-1:five_prime_utr;Parent=Msa1274740-mRNA-1
chr8_3 CDS 8588953 8589202 8588953 ID=Msa1274740-mRNA-1:cds;Parent=Msa1274740-mRNA-1
chr8_3 CDS 8588335 8588465 8588335 ID=Msa1274740-mRNA-1:cds;Parent=Msa1274740-mRNA-1
chr8_3 CDS 8587540 8587745 8587540 ID=Msa1274740-mRNA-1:cds;Parent=Msa1274740-mRNA-1
chr8_3 CDS 8587181 8587293 8587181 ID=Msa1274740-mRNA-1:cds;Parent=Msa1274740-mRNA-1
chr8_3 CDS 8586690 8586886 8586690 ID=Msa1274740-mRNA-1:cds;Parent=Msa1274740-mRNA-1
chr8_3 three_prime_UTR 8586413 8586689 8586413 ID=Msa1274740-mRNA-1:three_prime_utr;Parent=Msa1274740-mRNA-1
Gene Sequence

>Msa1274740

ATGAAGAACATGAATAGCAAACAAACACTTGTTCTACTCATAGTATCTTGCTTCCTAACTTGTGGTAGCTTTGCACAAGATACACTTGTACCAGCTATCATAACATTTGGTGACTCTGCAGTAGATGTAGGAAATAATGATTACCTTCCTACTCTTTTTAAGGCTAATTACCCTCCTTATGGTAGAGATTTTACTAATAAACAACCTACTGGGAGGTTTTGCAATGGCAAGTTAGCTACGGATTTTACAGCTGAAACACTTGGGTTTACGAGTTTTGCACCTGCATATCTTAGTCCACAGGCATCAGGGAAGAACCTCCTTCTTGGTGCTAACTTTGCTTCAGCTGCATCTGGTTATGATGAAAAGGCTGCTACGTTGAATCATGCAATTCCATTATCCCAACAGTTAGAATATTTCAAGGAATATCAAGGCAAGTTGGCTCAGGTTGCTGGCAGTAAAAAGGCTGCATCTATTATCAAGGATTCTTTGTATGTATTGAGTGCTGGCAGCAGTGACTTTGTACAAAATTATTATACCAATCCTTGGATCAACCAAGCAATCACTGTTGATCAGTATTCATCTTACCTGACTTTATTTGGTTACCATGAGAATGGTTGTGTCGCAAGAATCAACACTGATGCACAAGGATTTAACAAGAAAGTCAGCTCAGCTGCATCGAATCTTCAAAAGCAACTTCCTGGTTTTGCTGAGGCAGGGAAAGGGTGCTGTGGTACAGGTCTTGTAGAAACAACATCATTATTGTGCAATCCAAAATCACTAGGAACTTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTTCATCCTTCAGAAGCTGCTAATCAAGTTCTAGCTGATAACTTAATTATTGCCGGCATAGCTCTTATCACATAA
Protein sequence

>Msa1274740

MKNMNSKQTLVLLIVSCFLTCGSFAQDTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFTNKQPTGRFCNGKLATDFTAETLGFTSFAPAYLSPQASGKNLLLGANFASAASGYDEKAATLNHAIPLSQQLEYFKEYQGKLAQVAGSKKAASIIKDSLYVLSAGSSDFVQNYYTNPWINQAITVDQYSSYLTLFGYHENGCVARINTDAQGFNKKVSSAASNLQKQLPGFAEAGKGCCGTGLVETTSLLCNPKSLGTCSNATQYVFWDSVHPSEAANQVLADNLIIAGIALIT*