Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058740 | XP_003588378.2 | 93.927 | 247 | 15 | 0 | 1 | 247 | 1 | 247 | 2.09e-164 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058740 | sp|O82316|TIP41_ARATH | 75.102 | 245 | 61 | 0 | 1 | 245 | 1 | 245 | 6.93e-127 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058740 | G7IB42 | 93.927 | 247 | 15 | 0 | 1 | 247 | 1 | 247 | 9.97e-165 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008980 | Msa0058740 | 0.905371 | 4.608675e-80 | -8.615850e-47 |
| Msa0058740 | Msa0150000 | 0.829844 | 4.099699e-55 | -8.615850e-47 |
| Msa0058740 | Msa0357550 | 0.802249 | 6.136711e-49 | -8.615850e-47 |
| Msa0058740 | Msa0414480 | 0.809308 | 2.018002e-50 | -8.615850e-47 |
| Msa0058740 | Msa0591490 | 0.808203 | 3.474961e-50 | -8.615850e-47 |
| Msa0058740 | Msa0768670 | 0.801453 | 8.940986e-49 | -8.615850e-47 |
| Msa0058740 | Msa0975950 | 0.818493 | 1.904673e-52 | -8.615850e-47 |
| Msa0058740 | Msa1061670 | 0.804316 | 2.290899e-49 | -8.615850e-47 |
| Msa0058740 | Msa1106960 | 0.808200 | 3.481058e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058740 | MtrunA17_Chr1g0146171 | 93.927 | 247 | 15 | 0 | 1 | 247 | 1 | 247 | 1.92e-168 | 464 |
| Msa0058740 | MtrunA17_Chr1g0146161 | 86.235 | 247 | 34 | 0 | 1 | 247 | 1 | 247 | 1.99e-156 | 434 |
| Msa0058740 | MtrunA17_Chr8g0340161 | 54.032 | 248 | 108 | 3 | 1 | 243 | 1 | 247 | 1.73e-85 | 254 |
| Msa0058740 | MtrunA17_Chr2g0331261 | 52.459 | 244 | 112 | 2 | 4 | 243 | 5 | 248 | 1.99e-83 | 249 |
| Msa0058740 | MtrunA17_Chr4g0030861 | 50.417 | 240 | 115 | 2 | 1 | 236 | 3 | 242 | 5.53e-77 | 233 |
| Msa0058740 | MtrunA17_Chr5g0399341 | 49.799 | 249 | 117 | 4 | 1 | 244 | 1 | 246 | 1.00e-74 | 227 |
| Msa0058740 | MtrunA17_Chr1g0212671 | 48.148 | 243 | 121 | 3 | 3 | 240 | 5 | 247 | 1.09e-74 | 227 |
| Msa0058740 | MtrunA17_Chr7g0264961 | 51.867 | 241 | 111 | 3 | 1 | 237 | 3 | 242 | 1.51e-74 | 226 |
| Msa0058740 | MtrunA17_Chr7g0222791 | 50.206 | 243 | 116 | 3 | 3 | 240 | 5 | 247 | 6.41e-72 | 220 |
| Msa0058740 | MtrunA17_Chr1g0188771 | 42.913 | 254 | 134 | 3 | 2 | 244 | 4 | 257 | 9.62e-67 | 207 |
| Msa0058740 | MtrunA17_Chr6g0478191 | 44.223 | 251 | 132 | 3 | 2 | 244 | 4 | 254 | 2.78e-66 | 206 |
| Msa0058740 | MtrunA17_Chr4g0020781 | 41.176 | 170 | 99 | 1 | 63 | 232 | 27 | 195 | 6.64e-41 | 139 |
| Msa0058740 | MtrunA17_Chr5g0426131 | 33.969 | 262 | 141 | 8 | 3 | 247 | 14 | 260 | 5.75e-32 | 117 |
| Msa0058740 | MtrunA17_Chr2g0326621 | 34.749 | 259 | 133 | 11 | 10 | 241 | 31 | 280 | 4.03e-31 | 116 |
| Msa0058740 | MtrunA17_Chr7g0264111 | 35.223 | 247 | 135 | 9 | 9 | 234 | 29 | 271 | 1.91e-30 | 114 |
| Msa0058740 | MtrunA17_Chr4g0029071 | 34.981 | 263 | 126 | 13 | 10 | 241 | 30 | 278 | 7.74e-29 | 110 |
| Msa0058740 | MtrunA17_Chr1g0199731 | 33.721 | 258 | 136 | 10 | 10 | 241 | 30 | 278 | 5.40e-28 | 108 |
| Msa0058740 | MtrunA17_Chr2g0284611 | 35.193 | 233 | 142 | 6 | 18 | 247 | 37 | 263 | 8.91e-28 | 107 |
| Msa0058740 | MtrunA17_Chr5g0435051 | 36.087 | 230 | 138 | 7 | 18 | 245 | 39 | 261 | 1.36e-27 | 106 |
| Msa0058740 | MtrunA17_Chr3g0145671 | 34.043 | 235 | 128 | 10 | 19 | 234 | 37 | 263 | 2.59e-27 | 106 |
| Msa0058740 | MtrunA17_Chr4g0006001 | 35.652 | 230 | 122 | 9 | 19 | 229 | 56 | 278 | 1.32e-26 | 104 |
| Msa0058740 | MtrunA17_Chr3g0079421 | 36.073 | 219 | 127 | 8 | 18 | 232 | 25 | 234 | 3.48e-26 | 102 |
| Msa0058740 | MtrunA17_Chr5g0397391 | 34.764 | 233 | 121 | 9 | 19 | 229 | 52 | 275 | 5.17e-26 | 102 |
| Msa0058740 | MtrunA17_Chr1g0201331 | 36.449 | 214 | 117 | 7 | 19 | 225 | 74 | 275 | 6.58e-26 | 102 |
| Msa0058740 | MtrunA17_Chr4g0001221 | 35.122 | 205 | 113 | 7 | 24 | 220 | 80 | 272 | 6.73e-26 | 102 |
| Msa0058740 | MtrunA17_Chr2g0284591 | 33.735 | 249 | 155 | 7 | 2 | 247 | 20 | 261 | 2.63e-25 | 100 |
| Msa0058740 | MtrunA17_Chr8g0386961 | 34.454 | 238 | 124 | 10 | 19 | 234 | 52 | 279 | 3.71e-25 | 100 |
| Msa0058740 | MtrunA17_Chr2g0284631 | 34.667 | 225 | 136 | 8 | 18 | 239 | 90 | 306 | 2.43e-24 | 99.0 |
| Msa0058740 | MtrunA17_Chr2g0333771 | 35.294 | 204 | 114 | 7 | 24 | 220 | 85 | 277 | 5.03e-24 | 97.8 |
| Msa0058740 | MtrunA17_Chr5g0436701 | 34.440 | 241 | 127 | 10 | 10 | 228 | 46 | 277 | 2.70e-23 | 95.5 |
| Msa0058740 | MtrunA17_Chr3g0113211 | 31.020 | 245 | 141 | 8 | 10 | 234 | 46 | 282 | 3.11e-23 | 95.5 |
| Msa0058740 | MtrunA17_Chr1g0184541 | 33.333 | 219 | 137 | 6 | 16 | 232 | 59 | 270 | 5.83e-23 | 94.7 |
| Msa0058740 | MtrunA17_Chr8g0379911 | 32.922 | 243 | 151 | 9 | 1 | 240 | 21 | 254 | 1.02e-22 | 93.6 |
| Msa0058740 | MtrunA17_Chr7g0217331 | 33.649 | 211 | 134 | 4 | 19 | 228 | 37 | 242 | 1.26e-22 | 93.6 |
| Msa0058740 | MtrunA17_Chr8g0379901 | 32.301 | 226 | 142 | 8 | 18 | 240 | 38 | 255 | 1.33e-21 | 90.9 |
| Msa0058740 | MtrunA17_Chr4g0044201 | 33.628 | 226 | 128 | 10 | 18 | 240 | 34 | 240 | 1.67e-20 | 87.4 |
| Msa0058740 | MtrunA17_Chr2g0284581 | 32.000 | 225 | 137 | 7 | 7 | 221 | 19 | 237 | 3.42e-20 | 87.0 |
| Msa0058740 | MtrunA17_Chr2g0284601 | 34.043 | 188 | 117 | 5 | 36 | 220 | 5 | 188 | 5.78e-17 | 77.4 |
| Msa0058740 | MtrunA17_Chr4g0038591 | 28.731 | 268 | 159 | 8 | 3 | 247 | 36 | 294 | 6.95e-16 | 75.9 |
| Msa0058740 | MtrunA17_Chr4g0038611 | 30.769 | 182 | 102 | 4 | 73 | 234 | 41 | 218 | 2.28e-14 | 70.9 |
| Msa0058740 | MtrunA17_Chr6g0467461 | 30.556 | 108 | 56 | 2 | 125 | 232 | 4 | 92 | 4.68e-13 | 63.9 |
| Msa0058740 | MtrunA17_Chr4g0001111 | 32.414 | 145 | 82 | 5 | 24 | 161 | 80 | 215 | 5.91e-12 | 63.5 |
| Msa0058740 | MtrunA17_Chr8g0362451 | 33.333 | 93 | 43 | 2 | 140 | 232 | 8 | 81 | 7.29e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058740 | AT2G25810.1 | 75.102 | 245 | 61 | 0 | 1 | 245 | 1 | 245 | 7.04e-128 | 362 |
| Msa0058740 | AT2G36830.1 | 52.869 | 244 | 111 | 2 | 1 | 240 | 3 | 246 | 9.45e-86 | 255 |
| Msa0058740 | AT3G16240.1 | 51.626 | 246 | 112 | 4 | 1 | 240 | 1 | 245 | 3.53e-83 | 249 |
| Msa0058740 | AT3G26520.1 | 52.564 | 234 | 107 | 2 | 7 | 236 | 10 | 243 | 6.07e-81 | 243 |
| Msa0058740 | AT5G47450.1 | 52.321 | 237 | 109 | 2 | 1 | 233 | 1 | 237 | 6.20e-80 | 241 |
| Msa0058740 | AT4G17340.1 | 51.200 | 250 | 115 | 3 | 1 | 245 | 1 | 248 | 2.68e-77 | 234 |
| Msa0058740 | AT4G01470.1 | 48.594 | 249 | 123 | 3 | 1 | 244 | 3 | 251 | 1.26e-74 | 227 |
| Msa0058740 | AT1G73190.1 | 49.367 | 237 | 111 | 2 | 6 | 233 | 11 | 247 | 1.39e-70 | 218 |
| Msa0058740 | AT1G17810.1 | 47.266 | 256 | 118 | 3 | 6 | 244 | 11 | 266 | 2.70e-68 | 212 |
| Msa0058740 | AT3G47440.1 | 41.704 | 223 | 123 | 3 | 16 | 233 | 20 | 240 | 2.43e-49 | 163 |
| Msa0058740 | AT5G60660.1 | 34.127 | 252 | 143 | 9 | 10 | 241 | 30 | 278 | 9.79e-32 | 118 |
| Msa0058740 | AT4G35100.1 | 36.515 | 241 | 128 | 11 | 19 | 241 | 38 | 271 | 1.45e-30 | 115 |
| Msa0058740 | AT4G35100.2 | 36.515 | 241 | 128 | 11 | 19 | 241 | 38 | 271 | 1.45e-30 | 115 |
| Msa0058740 | AT2G37170.2 | 34.000 | 250 | 132 | 10 | 10 | 234 | 71 | 312 | 1.57e-30 | 115 |
| Msa0058740 | AT2G37180.1 | 34.538 | 249 | 136 | 10 | 10 | 236 | 28 | 271 | 1.92e-30 | 114 |
| Msa0058740 | AT2G37170.1 | 33.730 | 252 | 134 | 10 | 10 | 236 | 28 | 271 | 2.21e-30 | 114 |
| Msa0058740 | AT3G53420.1 | 35.294 | 238 | 131 | 10 | 19 | 236 | 39 | 273 | 8.47e-29 | 110 |
| Msa0058740 | AT3G53420.2 | 35.294 | 238 | 131 | 10 | 19 | 236 | 39 | 273 | 8.47e-29 | 110 |
| Msa0058740 | AT2G39010.1 | 32.927 | 246 | 140 | 9 | 10 | 234 | 29 | 270 | 9.00e-29 | 110 |
| Msa0058740 | AT3G54820.1 | 33.475 | 236 | 134 | 9 | 19 | 234 | 38 | 270 | 5.40e-28 | 108 |
| Msa0058740 | AT2G16850.1 | 33.469 | 245 | 140 | 10 | 19 | 246 | 36 | 274 | 5.00e-27 | 105 |
| Msa0058740 | AT4G00430.1 | 35.371 | 229 | 124 | 9 | 19 | 229 | 53 | 275 | 7.36e-26 | 102 |
| Msa0058740 | AT1G80760.1 | 34.762 | 210 | 119 | 6 | 19 | 221 | 80 | 278 | 1.13e-25 | 102 |
| Msa0058740 | AT1G01620.1 | 34.348 | 230 | 125 | 9 | 19 | 229 | 52 | 274 | 6.19e-25 | 100 |
| Msa0058740 | AT4G23400.1 | 34.348 | 230 | 125 | 9 | 19 | 229 | 53 | 275 | 2.97e-24 | 98.6 |
| Msa0058740 | AT4G10380.1 | 33.778 | 225 | 131 | 6 | 19 | 236 | 78 | 291 | 3.18e-24 | 98.6 |
| Msa0058740 | AT4G19030.1 | 34.052 | 232 | 137 | 8 | 18 | 240 | 54 | 278 | 3.57e-24 | 98.6 |
| Msa0058740 | AT5G37820.1 | 35.371 | 229 | 129 | 8 | 19 | 240 | 43 | 259 | 5.21e-24 | 97.8 |
| Msa0058740 | AT5G37820.2 | 35.371 | 229 | 129 | 8 | 19 | 240 | 79 | 295 | 8.37e-24 | 97.8 |
| Msa0058740 | AT4G18910.1 | 33.906 | 233 | 136 | 7 | 18 | 240 | 51 | 275 | 9.29e-24 | 97.4 |
| Msa0058740 | AT1G31885.1 | 35.681 | 213 | 123 | 5 | 18 | 221 | 42 | 249 | 1.16e-23 | 97.4 |
| Msa0058740 | AT2G45960.1 | 33.624 | 229 | 126 | 9 | 19 | 228 | 52 | 273 | 1.20e-23 | 97.1 |
| Msa0058740 | AT3G61430.2 | 33.624 | 229 | 126 | 9 | 19 | 228 | 52 | 273 | 1.23e-23 | 96.7 |
| Msa0058740 | AT3G61430.1 | 33.624 | 229 | 126 | 9 | 19 | 228 | 52 | 273 | 1.23e-23 | 96.7 |
| Msa0058740 | AT5G37810.1 | 34.583 | 240 | 133 | 9 | 12 | 240 | 33 | 259 | 2.78e-23 | 95.9 |
| Msa0058740 | AT1G52180.1 | 50.000 | 84 | 42 | 0 | 125 | 208 | 39 | 122 | 4.19e-23 | 91.3 |
| Msa0058740 | AT1G01620.2 | 33.493 | 209 | 117 | 8 | 36 | 229 | 1 | 202 | 3.35e-21 | 88.6 |
| Msa0058740 | AT3G06100.1 | 31.651 | 218 | 140 | 6 | 16 | 230 | 43 | 254 | 6.78e-21 | 89.4 |
| Msa0058740 | AT3G06100.2 | 32.381 | 210 | 133 | 6 | 24 | 230 | 3 | 206 | 6.90e-20 | 85.5 |
| Msa0058740 | AT1G31885.2 | 36.000 | 175 | 100 | 4 | 56 | 221 | 24 | 195 | 2.70e-19 | 84.7 |
| Msa0058740 | AT2G34390.1 | 30.455 | 220 | 140 | 6 | 18 | 229 | 47 | 261 | 5.27e-16 | 75.9 |
| Msa0058740 | AT2G34390.2 | 30.415 | 217 | 138 | 6 | 21 | 229 | 8 | 219 | 3.68e-15 | 73.2 |
| Msa0058740 | AT2G45960.2 | 31.754 | 211 | 118 | 9 | 19 | 210 | 52 | 255 | 5.72e-15 | 72.8 |
| Msa0058740 | AT2G45960.3 | 31.754 | 211 | 118 | 9 | 19 | 210 | 52 | 255 | 5.82e-15 | 73.2 |
| Msa0058740 | AT4G00430.2 | 32.927 | 164 | 93 | 7 | 19 | 171 | 53 | 210 | 8.59e-11 | 60.5 |
| Msa0058740 | AT3G06100.3 | 30.357 | 112 | 73 | 2 | 121 | 230 | 65 | 173 | 9.94e-11 | 59.7 |
Find 78 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGAAAGGAGGACTTTC+TGG | 0.139053 | 1_2:-15297819 | Msa0058740:CDS |
| ACAACAAATCCAACCAAAAT+TGG | 0.151579 | 1_2:+15297789 | None:intergenic |
| CTCATTGGTGGTGGGCTTGC+TGG | 0.168087 | 1_2:-15297645 | Msa0058740:CDS |
| CTGCTTTGGTTAGTGGAAAT+TGG | 0.185229 | 1_2:-15297698 | Msa0058740:CDS |
| GTTAATTTGTCTTAATAAAT+TGG | 0.188381 | 1_2:-15301845 | Msa0058740:five_prime_UTR |
| TTCTGGACTTGGCCCAATTT+TGG | 0.189335 | 1_2:-15297802 | Msa0058740:CDS |
| CCAGAAAGTCCTCCTTTCTT+TGG | 0.192856 | 1_2:+15297819 | None:intergenic |
| ACCTTTCTCTTTGTCTTTGC+TGG | 0.204008 | 1_2:-15301673 | Msa0058740:CDS |
| ATGAATCCAGCAAGATCTTT+TGG | 0.260996 | 1_2:-15297723 | Msa0058740:CDS |
| GGTTGTTCCTAAAGAGATTT+TGG | 0.265315 | 1_2:+15301750 | None:intergenic |
| CTCTTTGTCTTTGCTGGTGT+TGG | 0.290840 | 1_2:-15301667 | Msa0058740:CDS |
| ATTAGAGCTTGGATGCAATT+AGG | 0.307628 | 1_2:+15301712 | None:intergenic |
| ATATCCGCCGGTCACGTTTC+CGG | 0.326886 | 1_2:-15301120 | Msa0058740:CDS |
| TTTGGACCTGCTTTGGTTAG+TGG | 0.334512 | 1_2:-15297705 | Msa0058740:CDS |
| TTTGAATCCCGCCGTGACCT+TGG | 0.347716 | 1_2:-15301091 | Msa0058740:CDS |
| AATATGACCAAAATCTCTTT+AGG | 0.363930 | 1_2:-15301757 | Msa0058740:CDS |
| TTGAATCCCGCCGTGACCTT+GGG | 0.371209 | 1_2:-15301090 | Msa0058740:CDS |
| GGTGTACTCAAGGAGTAGTT+TGG | 0.378665 | 1_2:-15297896 | Msa0058740:CDS |
| GTTCACTGTGTATGCAACTA+TGG | 0.382620 | 1_2:-15297847 | Msa0058740:CDS |
| AAAAGATCTTGCTGGATTCA+TGG | 0.384219 | 1_2:+15297725 | None:intergenic |
| TCGTCCGTTCTATCTTATAT+TGG | 0.384445 | 1_2:-15301041 | Msa0058740:CDS |
| GTGACCTTGGGCCTCCTTGT+TGG | 0.384806 | 1_2:-15301078 | Msa0058740:CDS |
| TTAGCTGGCGGGGCTTTCGC+AGG | 0.405222 | 1_2:-15297753 | Msa0058740:CDS |
| TTGGGCCTCTCATTGGTGGT+GGG | 0.408100 | 1_2:-15297653 | Msa0058740:CDS |
| ATTAGGTTGAGTAGCCTCTT+GGG | 0.416839 | 1_2:+15301729 | None:intergenic |
| TGGGTTGGGCCTCTCATTGG+TGG | 0.430148 | 1_2:-15297657 | Msa0058740:CDS |
| GTTGGGCCTCTCATTGGTGG+TGG | 0.433600 | 1_2:-15297654 | Msa0058740:CDS |
| GCTAAGTGAAGATGGTTTAG+TGG | 0.434560 | 1_2:-15301190 | Msa0058740:CDS |
| CAACAAATCCAACCAAAATT+GGG | 0.439747 | 1_2:+15297790 | None:intergenic |
| AAAGGAGGACTTTCTGGACT+TGG | 0.441144 | 1_2:-15297813 | Msa0058740:CDS |
| GCAGGTCCAAAAGATCTTGC+TGG | 0.444089 | 1_2:+15297717 | None:intergenic |
| TATCTTCTTCATTACCTCAC+TGG | 0.445469 | 1_2:-15300985 | Msa0058740:CDS |
| TTAGATAAGCTAAGTGAAGA+TGG | 0.450182 | 1_2:-15301198 | Msa0058740:intron |
| AATTAGGTTGAGTAGCCTCT+TGG | 0.462527 | 1_2:+15301728 | None:intergenic |
| AGGTCACGGCGGGATTCAAA+TGG | 0.475016 | 1_2:+15301094 | None:intergenic |
| GTGTACTCAAGGAGTAGTTT+GGG | 0.480313 | 1_2:-15297895 | Msa0058740:CDS |
| AACAAGGAGGCCCAAGGTCA+CGG | 0.484302 | 1_2:+15301080 | None:intergenic |
| CATACACTTAAAAGTGGAGT+AGG | 0.484564 | 1_2:-15297918 | Msa0058740:CDS |
| CTTCTTCATTACCTCACTGG+TGG | 0.484926 | 1_2:-15300982 | Msa0058740:CDS |
| CGAATTCAACAATTAGAGCT+TGG | 0.493298 | 1_2:+15301701 | None:intergenic |
| CCAGTTCATACACTTAAAAG+TGG | 0.496805 | 1_2:-15297924 | Msa0058740:CDS |
| CTAAGTGAAGATGGTTTAGT+GGG | 0.510777 | 1_2:-15301189 | Msa0058740:CDS |
| AGCTACTAAGAATTAAGATT+AGG | 0.511363 | 1_2:-15297561 | Msa0058740:exon |
| ATGGCCACCGGAAACGTGAC+CGG | 0.514153 | 1_2:+15301113 | None:intergenic |
| GGGCTAACATCTTAGCTGGC+GGG | 0.514274 | 1_2:-15297764 | Msa0058740:CDS |
| ACCTTGGGCCTCCTTGTTGG+CGG | 0.515259 | 1_2:-15301075 | Msa0058740:CDS |
| CGGTGATGTGGCCGCCAACA+AGG | 0.518058 | 1_2:+15301064 | None:intergenic |
| AGGAGGCCCAAGGTCACGGC+GGG | 0.520183 | 1_2:+15301084 | None:intergenic |
| GTGGAAATTGGACTGACCAA+TGG | 0.540891 | 1_2:-15297686 | Msa0058740:CDS |
| GTGACCGGCGGATATCATTA+CGG | 0.543565 | 1_2:+15301128 | None:intergenic |
| GATCAACATATAGCATCTGC+AGG | 0.544628 | 1_2:-15301015 | Msa0058740:CDS |
| ACCAGCAAAGACAAAGAGAA+AGG | 0.549120 | 1_2:+15301672 | None:intergenic |
| CAATTTCCACTAACCAAAGC+AGG | 0.561106 | 1_2:+15297699 | None:intergenic |
| ACTATGGTTGATCCAAAGAA+AGG | 0.565384 | 1_2:-15297831 | Msa0058740:CDS |
| GTAGGGGCTAACATCTTAGC+TGG | 0.565586 | 1_2:-15297768 | Msa0058740:CDS |
| AACTCATGTTCCTCTCCTTG+TGG | 0.565628 | 1_2:-15297592 | Msa0058740:CDS |
| TTTGGTTGGATTTGTTGTAG+GGG | 0.576606 | 1_2:-15297784 | Msa0058740:CDS |
| GCAAGCCCACCACCAATGAG+AGG | 0.582625 | 1_2:+15297648 | None:intergenic |
| GCCGCCAACAAGGAGGCCCA+AGG | 0.586419 | 1_2:+15301074 | None:intergenic |
| CTTTCTTCATCCACAAGGAG+AGG | 0.595545 | 1_2:+15297582 | None:intergenic |
| GGCGGGATTCAAATGGCCAC+CGG | 0.596177 | 1_2:+15301101 | None:intergenic |
| CAATCCAATATAAGATAGAA+CGG | 0.608884 | 1_2:+15301037 | None:intergenic |
| TAGAACGGACGACGGTGATG+TGG | 0.614235 | 1_2:+15301052 | None:intergenic |
| AGTGGAGTAGGGTGTACTCA+AGG | 0.614383 | 1_2:-15297906 | Msa0058740:CDS |
| AGTAGCTTTCTTCATCCACA+AGG | 0.615821 | 1_2:+15297577 | None:intergenic |
| TCCGCCGGTCACGTTTCCGG+TGG | 0.622015 | 1_2:-15301117 | Msa0058740:CDS |
| TATGGCACAAACTCTTCTAG+TGG | 0.624242 | 1_2:-15301151 | Msa0058740:CDS |
| GGCTAACATCTTAGCTGGCG+GGG | 0.624500 | 1_2:-15297763 | Msa0058740:CDS |
| GGGGCTAACATCTTAGCTGG+CGG | 0.631127 | 1_2:-15297765 | Msa0058740:CDS |
| ATACACTTAAAAGTGGAGTA+GGG | 0.631270 | 1_2:-15297917 | Msa0058740:CDS |
| ATGGTTGATCCAAAGAAAGG+AGG | 0.657733 | 1_2:-15297828 | Msa0058740:CDS |
| GCCACCGGAAACGTGACCGG+CGG | 0.669384 | 1_2:+15301116 | None:intergenic |
| CTCTTTAGGAACAACCCAAG+AGG | 0.672884 | 1_2:-15301743 | Msa0058740:CDS |
| GTGGCCGTAATGATATCCGC+CGG | 0.687540 | 1_2:-15301132 | Msa0058740:CDS |
| AAGGAGGCCCAAGGTCACGG+CGG | 0.691357 | 1_2:+15301083 | None:intergenic |
| TGATGTGGCCGCCAACAAGG+AGG | 0.709158 | 1_2:+15301067 | None:intergenic |
| CACTTACTAATCCACCAGTG+AGG | 0.739020 | 1_2:+15300971 | None:intergenic |
| ATATAAGATAGAACGGACGA+CGG | 0.768400 | 1_2:+15301044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATAAAATTAAATTTTA+TGG | - | chr1_2:15300258-15300277 | Msa0058740:intron | 0.0% |
| !!! | ATATAATTTTATTAAAGGTT+TGG | - | chr1_2:15297837-15297856 | Msa0058740:CDS | 10.0% |
| !!! | TTATCTAATGAAATAAATTT+TGG | + | chr1_2:15298150-15298169 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATGATGTTAATA+TGG | + | chr1_2:15299550-15299569 | None:intergenic | 10.0% |
| !!! | TAACCAAATTAAATTTTTAA+AGG | - | chr1_2:15300382-15300401 | Msa0058740:intron | 10.0% |
| !!! | GTTAATTTGTCTTAATAAAT+TGG | - | chr1_2:15297515-15297534 | Msa0058740:three_prime_UTR | 15.0% |
| !! | CAATTCAAATATATTGATAT+GGG | + | chr1_2:15297795-15297814 | None:intergenic | 15.0% |
| !! | TCAATTCAAATATATTGATA+TGG | + | chr1_2:15297796-15297815 | None:intergenic | 15.0% |
| !!! | TATTTTTAACTTCTTAACTT+AGG | + | chr1_2:15298701-15298720 | None:intergenic | 15.0% |
| !!! | AATTAATTTCTAAAGTTTAG+AGG | - | chr1_2:15298750-15298769 | Msa0058740:intron | 15.0% |
| !! | TAAATTTCTAAACTTTATCT+TGG | + | chr1_2:15298793-15298812 | None:intergenic | 15.0% |
| !!! | TCTTCACTTAATTTATTTTA+AGG | - | chr1_2:15298826-15298845 | Msa0058740:intron | 15.0% |
| !!! | CTTCACTTAATTTATTTTAA+GGG | - | chr1_2:15298827-15298846 | Msa0058740:intron | 15.0% |
| !! | TTATAAGCAATATTTACATA+AGG | + | chr1_2:15298869-15298888 | None:intergenic | 15.0% |
| !! | GAAAATATTGTTTGATATTA+TGG | - | chr1_2:15300111-15300130 | Msa0058740:intron | 15.0% |
| !! | CTTAAAGCAAAAAAATTTAA+TGG | - | chr1_2:15300206-15300225 | Msa0058740:intron | 15.0% |
| !! | TTTCAAATTGTTATATGTGT+CGG | - | chr1_2:15297981-15298000 | Msa0058740:intron | 20.0% |
| !! | AATAGAATATTCGTAACATT+GGG | + | chr1_2:15299142-15299161 | None:intergenic | 20.0% |
| !! | CAGTTATTAAAATATGTTAG+TGG | + | chr1_2:15299709-15299728 | None:intergenic | 20.0% |
| !!! | ATATTTTAATAACTGTGTCA+AGG | - | chr1_2:15299714-15299733 | Msa0058740:intron | 20.0% |
| !!! | TATTTTAATAACTGTGTCAA+GGG | - | chr1_2:15299715-15299734 | Msa0058740:intron | 20.0% |
| !!! | TATCAAACAATATTTTCGTA+AGG | + | chr1_2:15300108-15300127 | None:intergenic | 20.0% |
| !!! | AGGCCTTTAAAAATTTAATT+TGG | + | chr1_2:15300388-15300407 | None:intergenic | 20.0% |
| !!! | TTTTGAAATATGTAGAATGT+GGG | - | chr1_2:15300865-15300884 | Msa0058740:intron | 20.0% |
| !! | TCTTTATCAATTGTGATAAA+TGG | + | chr1_2:15301290-15301309 | None:intergenic | 20.0% |
| !! | AAATAATGATCAAGATATTC+TGG | - | chr1_2:15301310-15301329 | Msa0058740:intron | 20.0% |
| !!! | TGATCATTTTTCTTGAATGT+AGG | - | chr1_2:15297547-15297566 | Msa0058740:three_prime_UTR | 25.0% |
| ! | AATATGACCAAAATCTCTTT+AGG | - | chr1_2:15297603-15297622 | Msa0058740:CDS | 25.0% |
| ! | TACTAATAACCTATGAAGTA+CGG | - | chr1_2:15297878-15297897 | Msa0058740:CDS | 25.0% |
| ! | ATGTTAGAAAGTTATTAGCT+AGG | + | chr1_2:15298050-15298069 | None:intergenic | 25.0% |
| ! | GTTAATTTAACGGTAAAAGT+TGG | + | chr1_2:15298104-15298123 | None:intergenic | 25.0% |
| ! | AAGTCTCTGAGTTAATTTAA+CGG | + | chr1_2:15298114-15298133 | None:intergenic | 25.0% |
| !!! | TTTAGTGGGATTATTTTTTG+TGG | - | chr1_2:15298185-15298204 | Msa0058740:intron | 25.0% |
| ! | CAATCCAATATAAGATAGAA+CGG | + | chr1_2:15298326-15298345 | None:intergenic | 25.0% |
| ! | AGAATTAAGTGATGAATTCT+AGG | - | chr1_2:15298720-15298739 | Msa0058740:intron | 25.0% |
| ! | GAATAGAATATTCGTAACAT+TGG | + | chr1_2:15299143-15299162 | None:intergenic | 25.0% |
| ! | GGTTGAGTTTATTTGTAATT+AGG | + | chr1_2:15299403-15299422 | None:intergenic | 25.0% |
| !!! | TATCTCAATGACTTTTAGTT+TGG | + | chr1_2:15299601-15299620 | None:intergenic | 25.0% |
| ! | ACAAATTATACCAAACTCAA+CGG | - | chr1_2:15299748-15299767 | Msa0058740:intron | 25.0% |
| ! | TTATTTGCATTATGTGGAAA+AGG | + | chr1_2:15299843-15299862 | None:intergenic | 25.0% |
| ! | TTCCACATAATGCAAATAAT+AGG | - | chr1_2:15299844-15299863 | Msa0058740:intron | 25.0% |
| ! | ATAATGCAAATAATAGGTGT+TGG | - | chr1_2:15299850-15299869 | Msa0058740:intron | 25.0% |
| !! | TTGGTCATGAATCTAAATTT+TGG | + | chr1_2:15300287-15300306 | None:intergenic | 25.0% |
| !! | TTGCAACAATATCACATTTT+TGG | + | chr1_2:15300563-15300582 | None:intergenic | 25.0% |
| !!! | GTTTTGAAATATGTAGAATG+TGG | - | chr1_2:15300864-15300883 | Msa0058740:intron | 25.0% |
| !!! | TTTTTGTTTTTTGCATTGTC+TGG | + | chr1_2:15301208-15301227 | None:intergenic | 25.0% |
| !! | CAATTTGTGTCTTTTATTGT+TGG | - | chr1_2:15301358-15301377 | Msa0058740:intron | 25.0% |
| ! | AGCTACTAAGAATTAAGATT+AGG | - | chr1_2:15301799-15301818 | Msa0058740:five_prime_UTR | 25.0% |
| TTAGATAAGCTAAGTGAAGA+TGG | - | chr1_2:15298162-15298181 | Msa0058740:intron | 30.0% | |
| TACATAAGGAAATGCTAACA+GGG | + | chr1_2:15298855-15298874 | None:intergenic | 30.0% | |
| TTACATAAGGAAATGCTAAC+AGG | + | chr1_2:15298856-15298875 | None:intergenic | 30.0% | |
| !!! | TGAGATGGAAGTTTTATTGA+GGG | + | chr1_2:15299006-15299025 | None:intergenic | 30.0% |
| !!! | TTGAGATGGAAGTTTTATTG+AGG | + | chr1_2:15299007-15299026 | None:intergenic | 30.0% |
| ATGGTAATAAGCATCATGAA+AGG | + | chr1_2:15299100-15299119 | None:intergenic | 30.0% | |
| TATTGTAGGGAATTTAAAGG+AGG | + | chr1_2:15299215-15299234 | None:intergenic | 30.0% | |
| GACTATTGTAGGGAATTTAA+AGG | + | chr1_2:15299218-15299237 | None:intergenic | 30.0% | |
| TTTATCCTTGGACTATTGTA+GGG | + | chr1_2:15299228-15299247 | None:intergenic | 30.0% | |
| ATACTTGGTATCTTTATCCT+TGG | + | chr1_2:15299240-15299259 | None:intergenic | 30.0% | |
| TCAGATCAAAGGTAATTGAA+AGG | + | chr1_2:15299272-15299291 | None:intergenic | 30.0% | |
| TCTCTTATTCATCAGATCAA+AGG | + | chr1_2:15299283-15299302 | None:intergenic | 30.0% | |
| AACCATATTATGTCATCCAA+TGG | + | chr1_2:15299357-15299376 | None:intergenic | 30.0% | |
| AGGAAGTGATATTATACCAT+GGG | + | chr1_2:15299383-15299402 | None:intergenic | 30.0% | |
| TAGGAAGTGATATTATACCA+TGG | + | chr1_2:15299384-15299403 | None:intergenic | 30.0% | |
| TTTCAACTTGGTAGATACAT+CGG | + | chr1_2:15299466-15299485 | None:intergenic | 30.0% | |
| TTTCTCGAATTCTTTCAACT+TGG | + | chr1_2:15299478-15299497 | None:intergenic | 30.0% | |
| !!! | ATGACTTTTAGTTTGGTGTT+GGG | + | chr1_2:15299594-15299613 | None:intergenic | 30.0% |
| !!! | AATGACTTTTAGTTTGGTGT+TGG | + | chr1_2:15299595-15299614 | None:intergenic | 30.0% |
| GATATTATGCCACATCTTTA+CGG | - | chr1_2:15299617-15299636 | Msa0058740:intron | 30.0% | |
| GAAATAAATCCGTAAAGATG+TGG | + | chr1_2:15299629-15299648 | None:intergenic | 30.0% | |
| GATTTATTTCATAGCAACCT+TGG | - | chr1_2:15299639-15299658 | Msa0058740:intron | 30.0% | |
| CAAATTATACCAAACTCAAC+GGG | - | chr1_2:15299749-15299768 | Msa0058740:intron | 30.0% | |
| ! | TTTTATGTGCTATCACTCTA+GGG | + | chr1_2:15299800-15299819 | None:intergenic | 30.0% |
| ! | ATTTTATGTGCTATCACTCT+AGG | + | chr1_2:15299801-15299820 | None:intergenic | 30.0% |
| CACCTATTATTTGCATTATG+TGG | + | chr1_2:15299849-15299868 | None:intergenic | 30.0% | |
| TTATTAAATTGTTCCCCCAA+AGG | + | chr1_2:15299905-15299924 | None:intergenic | 30.0% | |
| AATGTCAACTTCAATCACAA+GGG | - | chr1_2:15299935-15299954 | Msa0058740:intron | 30.0% | |
| ATATAACAAAGATACGATGG+AGG | + | chr1_2:15300027-15300046 | None:intergenic | 30.0% | |
| ! | TCCATCGTATCTTTGTTATA+TGG | - | chr1_2:15300026-15300045 | Msa0058740:intron | 30.0% |
| ! | CCATCGTATCTTTGTTATAT+GGG | - | chr1_2:15300027-15300046 | Msa0058740:intron | 30.0% |
| ! | CATCGTATCTTTGTTATATG+GGG | - | chr1_2:15300028-15300047 | Msa0058740:intron | 30.0% |
| TGAGGATAAAGACAAAAGAA+GGG | + | chr1_2:15300137-15300156 | None:intergenic | 30.0% | |
| TTGAGGATAAAGACAAAAGA+AGG | + | chr1_2:15300138-15300157 | None:intergenic | 30.0% | |
| !! | TTATGGAGGAGATTATTTTG+AGG | + | chr1_2:15300155-15300174 | None:intergenic | 30.0% |
| AGCTTAACTGATTACCAAAA+AGG | + | chr1_2:15300322-15300341 | None:intergenic | 30.0% | |
| ! | AAGATTTCGGGTGAAAAAAA+AGG | + | chr1_2:15300408-15300427 | None:intergenic | 30.0% |
| AATGTGTGTTCGAAGATTAT+GGG | + | chr1_2:15300493-15300512 | None:intergenic | 30.0% | |
| !!! | ATATCACATTTTTGGTTGCT+TGG | + | chr1_2:15300555-15300574 | None:intergenic | 30.0% |
| AACGAATCTCCTATATAAAC+CGG | - | chr1_2:15300668-15300687 | Msa0058740:intron | 30.0% | |
| ! | TTTTTGTCTTGTGTTATCCA+AGG | + | chr1_2:15300729-15300748 | None:intergenic | 30.0% |
| TCATGTTGAACATAGATTCT+TGG | - | chr1_2:15300765-15300784 | Msa0058740:intron | 30.0% | |
| ! | TTTGTGTTACTAATGAGTCA+GGG | + | chr1_2:15300901-15300920 | None:intergenic | 30.0% |
| ! | GACTTATTGGAGTTTGTTTA+TGG | + | chr1_2:15301023-15301042 | None:intergenic | 30.0% |
| ATACACTTAAAAGTGGAGTA+GGG | - | chr1_2:15301443-15301462 | Msa0058740:intron | 30.0% | |
| CAACAAATCCAACCAAAATT+GGG | + | chr1_2:15301573-15301592 | None:intergenic | 30.0% | |
| ACAACAAATCCAACCAAAAT+TGG | + | chr1_2:15301574-15301593 | None:intergenic | 30.0% | |
| !!! | ATTTTGGTTGGATTTGTTGT+AGG | - | chr1_2:15301574-15301593 | Msa0058740:intron | 30.0% |
| !!! | TTTTGGTTGGATTTGTTGTA+GGG | - | chr1_2:15301575-15301594 | Msa0058740:intron | 30.0% |
| ! | GGTTGTTCCTAAAGAGATTT+TGG | + | chr1_2:15297613-15297632 | None:intergenic | 35.0% |
| ATTAGAGCTTGGATGCAATT+AGG | + | chr1_2:15297651-15297670 | None:intergenic | 35.0% | |
| CGAATTCAACAATTAGAGCT+TGG | + | chr1_2:15297662-15297681 | None:intergenic | 35.0% | |
| TGGGATGAAGTTAATAGTAG+AGG | + | chr1_2:15297776-15297795 | None:intergenic | 35.0% | |
| TATGAAGTACGGATACTTCT+CGG | - | chr1_2:15297889-15297908 | Msa0058740:CDS | 35.0% | |
| AGTAATCATAGATGTCGTCT+CGG | + | chr1_2:15297945-15297964 | None:intergenic | 35.0% | |
| AAGTTATTAGCTAGGAAGCA+CGG | + | chr1_2:15298042-15298061 | None:intergenic | 35.0% | |
| CTAAGTGAAGATGGTTTAGT+GGG | - | chr1_2:15298171-15298190 | Msa0058740:intron | 35.0% | |
| !!! | GGGATTATTTTTTGTGGCTA+TGG | - | chr1_2:15298191-15298210 | Msa0058740:intron | 35.0% |
| ATATAAGATAGAACGGACGA+CGG | + | chr1_2:15298319-15298338 | None:intergenic | 35.0% | |
| TCGTCCGTTCTATCTTATAT+TGG | - | chr1_2:15298319-15298338 | Msa0058740:intron | 35.0% | |
| TATCTTCTTCATTACCTCAC+TGG | - | chr1_2:15298375-15298394 | Msa0058740:intron | 35.0% | |
| CAAAGAAAACTACCCAAGAA+TGG | - | chr1_2:15298895-15298914 | Msa0058740:intron | 35.0% | |
| !!! | GAGATGGAAGTTTTATTGAG+GGG | + | chr1_2:15299005-15299024 | None:intergenic | 35.0% |
| TTGTTAGTTGAGACTTGAGA+TGG | + | chr1_2:15299021-15299040 | None:intergenic | 35.0% | |
| !!! | ATTTTTGAGGCGAACATTAG+GGG | + | chr1_2:15299062-15299081 | None:intergenic | 35.0% |
| !!! | CATTTTTGAGGCGAACATTA+GGG | + | chr1_2:15299063-15299082 | None:intergenic | 35.0% |
| !!! | ACATTTTTGAGGCGAACATT+AGG | + | chr1_2:15299064-15299083 | None:intergenic | 35.0% |
| ! | GTTCCTTTCAGACATTTTTG+AGG | + | chr1_2:15299075-15299094 | None:intergenic | 35.0% |
| ATTTGTTTGCTTTCGTGTCA+TGG | + | chr1_2:15299119-15299138 | None:intergenic | 35.0% | |
| ATTCTATTCATGCTCAATCC+TGG | - | chr1_2:15299154-15299173 | Msa0058740:intron | 35.0% | |
| CTAAAGCATATGACATCGTT+AGG | + | chr1_2:15299189-15299208 | None:intergenic | 35.0% | |
| AAATTCCCTACAATAGTCCA+AGG | - | chr1_2:15299220-15299239 | Msa0058740:intron | 35.0% | |
| CTTTATCCTTGGACTATTGT+AGG | + | chr1_2:15299229-15299248 | None:intergenic | 35.0% | |
| GAAAGGTTCTTCTTCATACT+TGG | + | chr1_2:15299255-15299274 | None:intergenic | 35.0% | |
| TGCAATAAGGCAACTCTATT+GGG | + | chr1_2:15299332-15299351 | None:intergenic | 35.0% | |
| CTCCATTGGATGACATAATA+TGG | - | chr1_2:15299352-15299371 | Msa0058740:intron | 35.0% | |
| ACATAATATGGTTATCCCCA+TGG | - | chr1_2:15299364-15299383 | Msa0058740:intron | 35.0% | |
| GGAAGTGATATTATACCATG+GGG | + | chr1_2:15299382-15299401 | None:intergenic | 35.0% | |
| AAACTCAACCCGTAAAGAAA+TGG | - | chr1_2:15299413-15299432 | Msa0058740:intron | 35.0% | |
| !!! | TGACTTTTAGTTTGGTGTTG+GGG | + | chr1_2:15299593-15299612 | None:intergenic | 35.0% |
| TTATTGCAGTAGGTACTAGT+TGG | + | chr1_2:15299678-15299697 | None:intergenic | 35.0% | |
| AACTAGTACCTACTGCAATA+AGG | - | chr1_2:15299677-15299696 | Msa0058740:intron | 35.0% | |
| ! | TCTAGGGTTAACTTATGGAT+AGG | + | chr1_2:15299784-15299803 | None:intergenic | 35.0% |
| !! | ATCACTCTAGGGTTAACTTA+TGG | + | chr1_2:15299789-15299808 | None:intergenic | 35.0% |
| !!! | ATGTGGAAAAGGTTTTGTTC+TGG | + | chr1_2:15299832-15299851 | None:intergenic | 35.0% |
| TTGAAGTTGACATTGTTCTC+AGG | + | chr1_2:15299929-15299948 | None:intergenic | 35.0% | |
| CAATGTCAACTTCAATCACA+AGG | - | chr1_2:15299934-15299953 | Msa0058740:intron | 35.0% | |
| ATGTCAACTTCAATCACAAG+GGG | - | chr1_2:15299936-15299955 | Msa0058740:intron | 35.0% | |
| AAGGGGAGCTACAAAAAATA+TGG | - | chr1_2:15299953-15299972 | Msa0058740:intron | 35.0% | |
| GCTACAAAAAATATGGTGGT+TGG | - | chr1_2:15299960-15299979 | Msa0058740:intron | 35.0% | |
| ! | AAAAAATATGGTGGTTGGCT+TGG | - | chr1_2:15299965-15299984 | Msa0058740:intron | 35.0% |
| CCCATATAACAAAGATACGA+TGG | + | chr1_2:15300030-15300049 | None:intergenic | 35.0% | |
| ! | TATTTTCGTAAGGTTGCAGA+TGG | + | chr1_2:15300098-15300117 | None:intergenic | 35.0% |
| CTTTAAGCCTCTTAATCTGT+TGG | + | chr1_2:15300193-15300212 | None:intergenic | 35.0% | |
| TTCATGACCAAGAGTAATTG+AGG | - | chr1_2:15300296-15300315 | Msa0058740:intron | 35.0% | |
| AAAAAGGCCTCAATTACTCT+TGG | + | chr1_2:15300306-15300325 | None:intergenic | 35.0% | |
| ! | AAGAGTAATTGAGGCCTTTT+TGG | - | chr1_2:15300305-15300324 | Msa0058740:intron | 35.0% |
| !!! | TTTTTTCACCCGAAATCTTG+TGG | - | chr1_2:15300409-15300428 | Msa0058740:intron | 35.0% |
| TTCGAAGATTATGGGCAATA+TGG | + | chr1_2:15300485-15300504 | None:intergenic | 35.0% | |
| GAATGTGTGTTCGAAGATTA+TGG | + | chr1_2:15300494-15300513 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGCTTGGCTAAA+TGG | + | chr1_2:15300547-15300566 | None:intergenic | 35.0% |
| AACACAAGACAAAAACCATG+AGG | - | chr1_2:15300734-15300753 | Msa0058740:intron | 35.0% | |
| ! | AACATGAAGAGTATACCTCA+TGG | + | chr1_2:15300752-15300771 | None:intergenic | 35.0% |
| TGTTGAACATAGATTCTTGG+AGG | - | chr1_2:15300768-15300787 | Msa0058740:intron | 35.0% | |
| ATACTCTTTGTGTGAATGAG+GGG | + | chr1_2:15300826-15300845 | None:intergenic | 35.0% | |
| GATACTCTTTGTGTGAATGA+GGG | + | chr1_2:15300827-15300846 | None:intergenic | 35.0% | |
| ! | TTGTGTTACTAATGAGTCAG+GGG | + | chr1_2:15300900-15300919 | None:intergenic | 35.0% |
| ! | GTTTGTGTTACTAATGAGTC+AGG | + | chr1_2:15300902-15300921 | None:intergenic | 35.0% |
| ACTCATTAGTAACACAAACC+AGG | - | chr1_2:15300903-15300922 | Msa0058740:intron | 35.0% | |
| GTTTGAAAAGTCTATGAGGA+TGG | + | chr1_2:15300999-15301018 | None:intergenic | 35.0% | |
| TGGTGTTTGAAAAGTCTATG+AGG | + | chr1_2:15301003-15301022 | None:intergenic | 35.0% | |
| GAGAAGAACTCAAGACTTAT+TGG | + | chr1_2:15301036-15301055 | None:intergenic | 35.0% | |
| TATAGTGCTTCATCTTAAGG+CGG | + | chr1_2:15301095-15301114 | None:intergenic | 35.0% | |
| TCGTATAGTGCTTCATCTTA+AGG | + | chr1_2:15301098-15301117 | None:intergenic | 35.0% | |
| !! | CCACTTTTAAGTGTATGAAC+TGG | + | chr1_2:15301439-15301458 | None:intergenic | 35.0% |
| CCAGTTCATACACTTAAAAG+TGG | - | chr1_2:15301436-15301455 | Msa0058740:intron | 35.0% | |
| CATACACTTAAAAGTGGAGT+AGG | - | chr1_2:15301442-15301461 | Msa0058740:intron | 35.0% | |
| ACTATGGTTGATCCAAAGAA+AGG | - | chr1_2:15301529-15301548 | Msa0058740:intron | 35.0% | |
| !! | TTTGGTTGGATTTGTTGTAG+GGG | - | chr1_2:15301576-15301595 | Msa0058740:intron | 35.0% |
| AAAAGATCTTGCTGGATTCA+TGG | + | chr1_2:15301638-15301657 | None:intergenic | 35.0% | |
| ! | ATGAATCCAGCAAGATCTTT+TGG | - | chr1_2:15301637-15301656 | Msa0058740:intron | 35.0% |
| !!! | GACTGACCAATGGATTTTTT+GGG | - | chr1_2:15301684-15301703 | Msa0058740:CDS | 35.0% |
| !!! | ACCAATGGATTTTTTGGGTT+GGG | - | chr1_2:15301689-15301708 | Msa0058740:CDS | 35.0% |
| !! | ATTAGGTTGAGTAGCCTCTT+GGG | + | chr1_2:15297634-15297653 | None:intergenic | 40.0% |
| !! | AATTAGGTTGAGTAGCCTCT+TGG | + | chr1_2:15297635-15297654 | None:intergenic | 40.0% |
| ACCTTTCTCTTTGTCTTTGC+TGG | - | chr1_2:15297687-15297706 | Msa0058740:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | + | chr1_2:15297691-15297710 | None:intergenic | 40.0% | |
| !! | TGCTGGTGTTGGTTCAAAAA+TGG | - | chr1_2:15297704-15297723 | Msa0058740:CDS | 40.0% |
| !! | GAGAAGTATCCGTACTTCAT+AGG | + | chr1_2:15297890-15297909 | None:intergenic | 40.0% |
| TACGGATACTTCTCGGATTA+GGG | - | chr1_2:15297896-15297915 | Msa0058740:CDS | 40.0% | |
| TATGGATACTAGACACGACA+CGG | + | chr1_2:15298012-15298031 | None:intergenic | 40.0% | |
| GCTAAGTGAAGATGGTTTAG+TGG | - | chr1_2:15298170-15298189 | Msa0058740:intron | 40.0% | |
| TATGGCACAAACTCTTCTAG+TGG | - | chr1_2:15298209-15298228 | Msa0058740:intron | 40.0% | |
| GATCAACATATAGCATCTGC+AGG | - | chr1_2:15298345-15298364 | Msa0058740:intron | 40.0% | |
| GAGCTTCATCTTCCATTCTT+GGG | + | chr1_2:15298910-15298929 | None:intergenic | 40.0% | |
| TGAGCTTCATCTTCCATTCT+TGG | + | chr1_2:15298911-15298930 | None:intergenic | 40.0% | |
| !!! | GGAAGTTTTATTGAGGGGTT+GGG | + | chr1_2:15299000-15299019 | None:intergenic | 40.0% |
| !!! | TGGAAGTTTTATTGAGGGGT+TGG | + | chr1_2:15299001-15299020 | None:intergenic | 40.0% |
| ACATTAGGGGTGAAATTGCT+CGG | + | chr1_2:15299049-15299068 | None:intergenic | 40.0% | |
| TCGCCTCAAAAATGTCTGAA+AGG | - | chr1_2:15299069-15299088 | Msa0058740:intron | 40.0% | |
| TGTAGGGAATTTAAAGGAGG+TGG | + | chr1_2:15299212-15299231 | None:intergenic | 40.0% | |
| GTGCAATAAGGCAACTCTAT+TGG | + | chr1_2:15299333-15299352 | None:intergenic | 40.0% | |
| TCATCCAATGGAGTGCAATA+AGG | + | chr1_2:15299345-15299364 | None:intergenic | 40.0% | |
| TCAACCCGTAAAGAAATGGA+CGG | - | chr1_2:15299417-15299436 | Msa0058740:intron | 40.0% | |
| !!! | TAGTTTGGTGTTGGGGTTTT+AGG | + | chr1_2:15299586-15299605 | None:intergenic | 40.0% |
| AATAAGATGCCCGTTGAGTT+TGG | + | chr1_2:15299761-15299780 | None:intergenic | 40.0% | |
| ! | ATGCGGTAGAAATGGTTTGT+GGG | + | chr1_2:15299877-15299896 | None:intergenic | 40.0% |
| GGGAGCTACAAAAAATATGG+TGG | - | chr1_2:15299956-15299975 | Msa0058740:intron | 40.0% | |
| ! | CAAAGATACGATGGAGGTTT+TGG | + | chr1_2:15300021-15300040 | None:intergenic | 40.0% |
| !! | GTTTTAGGCCACAAGATTTC+GGG | + | chr1_2:15300420-15300439 | None:intergenic | 40.0% |
| !!! | GGTTTTAGGCCACAAGATTT+CGG | + | chr1_2:15300421-15300440 | None:intergenic | 40.0% |
| GAACACACATTCAACCAACT+TGG | - | chr1_2:15300502-15300521 | Msa0058740:intron | 40.0% | |
| TTGGCTAAATGGAGAGTAGT+GGG | + | chr1_2:15300536-15300555 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAAAGCCTCGAACT+AGG | + | chr1_2:15300616-15300635 | None:intergenic | 40.0% |
| AAAACCTGTAATGTTCGACG+AGG | - | chr1_2:15300629-15300648 | Msa0058740:intron | 40.0% | |
| ! | CATGCTAAGCCGGTTTATAT+AGG | + | chr1_2:15300680-15300699 | None:intergenic | 40.0% |
| TTATCATGTGCATGCTAAGC+CGG | + | chr1_2:15300690-15300709 | None:intergenic | 40.0% | |
| CTTAGCATGCACATGATAAG+AGG | - | chr1_2:15300691-15300710 | Msa0058740:intron | 40.0% | |
| ! | TTTTGGATGCAAGACCGTTA+GGG | + | chr1_2:15300799-15300818 | None:intergenic | 40.0% |
| CGATACTCTTTGTGTGAATG+AGG | + | chr1_2:15300828-15300847 | None:intergenic | 40.0% | |
| !! | CATTCACACAAAGAGTATCG+AGG | - | chr1_2:15300828-15300847 | Msa0058740:intron | 40.0% |
| ! | GTATCGAGGTCTTTTCTAGA+TGG | - | chr1_2:15300842-15300861 | Msa0058740:intron | 40.0% |
| TAACACAAACCAGGTCATCA+AGG | - | chr1_2:15300912-15300931 | Msa0058740:intron | 40.0% | |
| TTGAGCAATGGATGTTTGGA+AGG | + | chr1_2:15300976-15300995 | None:intergenic | 40.0% | |
| ATGGTTGAGCAATGGATGTT+TGG | + | chr1_2:15300980-15300999 | None:intergenic | 40.0% | |
| AACATCTTTACTCCCTTCTG+TGG | - | chr1_2:15301120-15301139 | Msa0058740:CDS | 40.0% | |
| GTGTACTCAAGGAGTAGTTT+GGG | - | chr1_2:15301465-15301484 | Msa0058740:intron | 40.0% | |
| GTTCACTGTGTATGCAACTA+TGG | - | chr1_2:15301513-15301532 | Msa0058740:intron | 40.0% | |
| ATGGTTGATCCAAAGAAAGG+AGG | - | chr1_2:15301532-15301551 | Msa0058740:intron | 40.0% | |
| ! | AAGATCTTTTGGACCTGCTT+TGG | - | chr1_2:15301648-15301667 | Msa0058740:intron | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | + | chr1_2:15301664-15301683 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | - | chr1_2:15301662-15301681 | Msa0058740:CDS | 40.0% | |
| !!! | GGACTGACCAATGGATTTTT+TGG | - | chr1_2:15301683-15301702 | Msa0058740:CDS | 40.0% |
| !!! | GACCAATGGATTTTTTGGGT+TGG | - | chr1_2:15301688-15301707 | Msa0058740:CDS | 40.0% |
| AGTAGCTTTCTTCATCCACA+AGG | + | chr1_2:15301786-15301805 | None:intergenic | 40.0% | |
| ! | CTCTTTAGGAACAACCCAAG+AGG | - | chr1_2:15297617-15297636 | Msa0058740:CDS | 45.0% |
| CTCTTTGTCTTTGCTGGTGT+TGG | - | chr1_2:15297693-15297712 | Msa0058740:CDS | 45.0% | |
| ! | GTTGGTTCAAAAATGGCTGC+TGG | - | chr1_2:15297711-15297730 | Msa0058740:CDS | 45.0% |
| GTACGGATACTTCTCGGATT+AGG | - | chr1_2:15297895-15297914 | Msa0058740:CDS | 45.0% | |
| ! | ACGGATACTTCTCGGATTAG+GGG | - | chr1_2:15297897-15297916 | Msa0058740:CDS | 45.0% |
| ! | AGGAAGCACGGACACAAATA+TGG | + | chr1_2:15298030-15298049 | None:intergenic | 45.0% |
| CTTCTTCATTACCTCACTGG+TGG | - | chr1_2:15298378-15298397 | Msa0058740:intron | 45.0% | |
| CACTTACTAATCCACCAGTG+AGG | + | chr1_2:15298392-15298411 | None:intergenic | 45.0% | |
| GGAAGATGAAGCTCATTCAG+AGG | - | chr1_2:15298916-15298935 | Msa0058740:intron | 45.0% | |
| ATTCATGCTCAATCCTGGCA+CGG | - | chr1_2:15299159-15299178 | Msa0058740:intron | 45.0% | |
| GAGTGTAACGCAAGAGCAAA+AGG | - | chr1_2:15299301-15299320 | Msa0058740:intron | 45.0% | |
| ! | GTTGCCTTATTGCACTCCAT+TGG | - | chr1_2:15299338-15299357 | Msa0058740:intron | 45.0% |
| CAACCCGTAAAGAAATGGAC+GGG | - | chr1_2:15299418-15299437 | Msa0058740:intron | 45.0% | |
| ATGCCCGTCCATTTCTTTAC+GGG | + | chr1_2:15299424-15299443 | None:intergenic | 45.0% | |
| GATGCCCGTCCATTTCTTTA+CGG | + | chr1_2:15299425-15299444 | None:intergenic | 45.0% | |
| TTGAGCTAGTGACATGGAGA+TGG | + | chr1_2:15299525-15299544 | None:intergenic | 45.0% | |
| ! | ATGGTGTTGAGCTAGTGACA+TGG | + | chr1_2:15299531-15299550 | None:intergenic | 45.0% |
| !!! | TTTGGTGTTGGGGTTTTAGG+TGG | + | chr1_2:15299583-15299602 | None:intergenic | 45.0% |
| TTGCAGTAGGTACTAGTTGG+AGG | + | chr1_2:15299675-15299694 | None:intergenic | 45.0% | |
| CATGCGGTAGAAATGGTTTG+TGG | + | chr1_2:15299878-15299897 | None:intergenic | 45.0% | |
| AGGACATCATGCGGTAGAAA+TGG | + | chr1_2:15299885-15299904 | None:intergenic | 45.0% | |
| TTCTACCGCATGATGTCCTT+TGG | - | chr1_2:15299886-15299905 | Msa0058740:intron | 45.0% | |
| TCTACCGCATGATGTCCTTT+GGG | - | chr1_2:15299887-15299906 | Msa0058740:intron | 45.0% | |
| !! | AAATATGGTGGTTGGCTTGG+AGG | - | chr1_2:15299968-15299987 | Msa0058740:intron | 45.0% |
| !! | AATATGGTGGTTGGCTTGGA+GGG | - | chr1_2:15299969-15299988 | Msa0058740:intron | 45.0% |
| !! | AGATACGATGGAGGTTTTGG+AGG | + | chr1_2:15300018-15300037 | None:intergenic | 45.0% |
| !! | CAATGACTGTGAAGGTGTTG+GGG | + | chr1_2:15300067-15300086 | None:intergenic | 45.0% |
| !! | GCAATGACTGTGAAGGTGTT+GGG | + | chr1_2:15300068-15300087 | None:intergenic | 45.0% |
| ACACTTCGCAATGACTGTGA+AGG | + | chr1_2:15300075-15300094 | None:intergenic | 45.0% | |
| AATCTCCTCCATAACTCACC+AGG | - | chr1_2:15300161-15300180 | Msa0058740:intron | 45.0% | |
| ATCTCCTCCATAACTCACCA+GGG | - | chr1_2:15300162-15300181 | Msa0058740:intron | 45.0% | |
| AGCCTCTTAATCTGTTGGAC+CGG | + | chr1_2:15300188-15300207 | None:intergenic | 45.0% | |
| TGGGCAATATGGTGTGAGTA+GGG | + | chr1_2:15300474-15300493 | None:intergenic | 45.0% | |
| ATGGGCAATATGGTGTGAGT+AGG | + | chr1_2:15300475-15300494 | None:intergenic | 45.0% | |
| CTTGGCTAAATGGAGAGTAG+TGG | + | chr1_2:15300537-15300556 | None:intergenic | 45.0% | |
| CTCGAACTAGGCAGAATTAC+AGG | + | chr1_2:15300604-15300623 | None:intergenic | 45.0% | |
| CTGTAATTCTGCCTAGTTCG+AGG | - | chr1_2:15300602-15300621 | Msa0058740:intron | 45.0% | |
| AATGTTCGACGAGGAAGCAA+TGG | - | chr1_2:15300638-15300657 | Msa0058740:intron | 45.0% | |
| !!! | AGAGGCATCTTTTGATGCCT+TGG | - | chr1_2:15300709-15300728 | Msa0058740:intron | 45.0% |
| TCTTGGAGGACATTCCCTAA+CGG | - | chr1_2:15300782-15300801 | Msa0058740:intron | 45.0% | |
| !! | GTTTTGGATGCAAGACCGTT+AGG | + | chr1_2:15300800-15300819 | None:intergenic | 45.0% |
| CTATGAGGATGGTTGAGCAA+TGG | + | chr1_2:15300988-15301007 | None:intergenic | 45.0% | |
| ! | AGATTTTCAGTGTCCGTTCC+GGG | + | chr1_2:15301166-15301185 | None:intergenic | 45.0% |
| ! | GAGATTTTCAGTGTCCGTTC+CGG | + | chr1_2:15301167-15301186 | None:intergenic | 45.0% |
| GGTGTACTCAAGGAGTAGTT+TGG | - | chr1_2:15301464-15301483 | Msa0058740:intron | 45.0% | |
| CCAGAAAGTCCTCCTTTCTT+TGG | + | chr1_2:15301544-15301563 | None:intergenic | 45.0% | |
| CCAAAGAAAGGAGGACTTTC+TGG | - | chr1_2:15301541-15301560 | Msa0058740:intron | 45.0% | |
| AAAGGAGGACTTTCTGGACT+TGG | - | chr1_2:15301547-15301566 | Msa0058740:intron | 45.0% | |
| ! | TTCTGGACTTGGCCCAATTT+TGG | - | chr1_2:15301558-15301577 | Msa0058740:intron | 45.0% |
| TTTGGACCTGCTTTGGTTAG+TGG | - | chr1_2:15301655-15301674 | Msa0058740:CDS | 45.0% | |
| GTGGAAATTGGACTGACCAA+TGG | - | chr1_2:15301674-15301693 | Msa0058740:CDS | 45.0% | |
| GCCCAACCCAAAAAATCCAT+TGG | + | chr1_2:15301693-15301712 | None:intergenic | 45.0% | |
| AACTCATGTTCCTCTCCTTG+TGG | - | chr1_2:15301768-15301787 | Msa0058740:exon | 45.0% | |
| CTTTCTTCATCCACAAGGAG+AGG | + | chr1_2:15301781-15301800 | None:intergenic | 45.0% | |
| !! | AATAAAATTATATTGAAAAT+TGG | + | chr1_2:15297830-15297849 | None:intergenic | 5.0% |
| !!! | TTTCAATATAATTTTATTAA+AGG | - | chr1_2:15297832-15297851 | Msa0058740:CDS | 5.0% |
| !!! | ATAAATGTTTTTTTTTTTTA+AGG | + | chr1_2:15298654-15298673 | None:intergenic | 5.0% |
| !!! | TGTTAAAAAAATATTTTTAA+AGG | + | chr1_2:15300232-15300251 | None:intergenic | 5.0% |
| !! | TTCTCGGATTAGGGGTGTTC+TGG | - | chr1_2:15297905-15297924 | Msa0058740:CDS | 50.0% |
| ! | CATAGATGTCGTCTCGGTGT+TGG | + | chr1_2:15297939-15297958 | None:intergenic | 50.0% |
| GTGACCGGCGGATATCATTA+CGG | + | chr1_2:15298235-15298254 | None:intergenic | 50.0% | |
| TAGGGGTGAAATTGCTCGGA+GGG | + | chr1_2:15299045-15299064 | None:intergenic | 50.0% | |
| TTAGGGGTGAAATTGCTCGG+AGG | + | chr1_2:15299046-15299065 | None:intergenic | 50.0% | |
| ! | GGAATGCGCCTTATTGCAGT+AGG | + | chr1_2:15299688-15299707 | None:intergenic | 50.0% |
| CTACCGCATGATGTCCTTTG+GGG | - | chr1_2:15299888-15299907 | Msa0058740:intron | 50.0% | |
| TACCGCATGATGTCCTTTGG+GGG | - | chr1_2:15299889-15299908 | Msa0058740:intron | 50.0% | |
| TTCCCCCAAAGGACATCATG+CGG | + | chr1_2:15299894-15299913 | None:intergenic | 50.0% | |
| TTGGAGGGAGGTGACATGTA+CGG | - | chr1_2:15299984-15300003 | Msa0058740:intron | 50.0% | |
| ! | CGCAATGACTGTGAAGGTGT+TGG | + | chr1_2:15300069-15300088 | None:intergenic | 50.0% |
| TGTGGCCTAAAACCCTTGCT+TGG | - | chr1_2:15300427-15300446 | Msa0058740:intron | 50.0% | |
| GTGGCCTAAAACCCTTGCTT+GGG | - | chr1_2:15300428-15300447 | Msa0058740:intron | 50.0% | |
| ! | GCAACCCAAGCAAGGGTTTT+AGG | + | chr1_2:15300435-15300454 | None:intergenic | 50.0% |
| ! | AAACCCTTGCTTGGGTTGCT+TGG | - | chr1_2:15300436-15300455 | Msa0058740:intron | 50.0% |
| CAATATGGTGTGAGTAGGGC+CGG | + | chr1_2:15300470-15300489 | None:intergenic | 50.0% | |
| ! | GCTAAATGGAGAGTAGTGGG+TGG | + | chr1_2:15300533-15300552 | None:intergenic | 50.0% |
| GCTTCCTCGTCGAACATTAC+AGG | + | chr1_2:15300636-15300655 | None:intergenic | 50.0% | |
| !!! | TGTGAATGAGGGGCTGGTTT+TGG | + | chr1_2:15300816-15300835 | None:intergenic | 50.0% |
| TCTTTGTGTGAATGAGGGGC+TGG | + | chr1_2:15300822-15300841 | None:intergenic | 50.0% | |
| CACAAACCAGGTCATCAAGG+TGG | - | chr1_2:15300915-15300934 | Msa0058740:intron | 50.0% | |
| ! | ATGTCACCACCTTGATGACC+TGG | + | chr1_2:15300924-15300943 | None:intergenic | 50.0% |
| GTGGTGACATGCACAACTCA+TGG | - | chr1_2:15300934-15300953 | Msa0058740:intron | 50.0% | |
| TACTCCCTTCTGTGGCATCT+AGG | - | chr1_2:15301128-15301147 | Msa0058740:CDS | 50.0% | |
| GTTGCCTAGATGCCACAGAA+GGG | + | chr1_2:15301135-15301154 | None:intergenic | 50.0% | |
| TGTTGCCTAGATGCCACAGA+AGG | + | chr1_2:15301136-15301155 | None:intergenic | 50.0% | |
| ! | ATTTTCAGTGTCCGTTCCGG+GGG | + | chr1_2:15301164-15301183 | None:intergenic | 50.0% |
| ! | GATTTTCAGTGTCCGTTCCG+GGG | + | chr1_2:15301165-15301184 | None:intergenic | 50.0% |
| AGTGGAGTAGGGTGTACTCA+AGG | - | chr1_2:15301454-15301473 | Msa0058740:intron | 50.0% | |
| !! | GGACTTGGCCCAATTTTGGT+TGG | - | chr1_2:15301562-15301581 | Msa0058740:intron | 50.0% |
| GTAGGGGCTAACATCTTAGC+TGG | - | chr1_2:15301592-15301611 | Msa0058740:intron | 50.0% | |
| GCAGGTCCAAAAGATCTTGC+TGG | + | chr1_2:15301646-15301665 | None:intergenic | 50.0% | |
| !!! | TTTTGGGTTGGGCCTCTCAT+TGG | - | chr1_2:15301700-15301719 | Msa0058740:CDS | 50.0% |
| !! | TGTCGTCTCGGTGTTGGTGT+CGG | + | chr1_2:15297933-15297952 | None:intergenic | 55.0% |
| GTGGCCGTAATGATATCCGC+CGG | - | chr1_2:15298228-15298247 | Msa0058740:intron | 55.0% | |
| ATATCCGCCGGTCACGTTTC+CGG | - | chr1_2:15298240-15298259 | Msa0058740:intron | 55.0% | |
| AGGTCACGGCGGGATTCAAA+TGG | + | chr1_2:15298269-15298288 | None:intergenic | 55.0% | |
| TTTGAATCCCGCCGTGACCT+TGG | - | chr1_2:15298269-15298288 | Msa0058740:intron | 55.0% | |
| TTGAATCCCGCCGTGACCTT+GGG | - | chr1_2:15298270-15298289 | Msa0058740:intron | 55.0% | |
| AACAAGGAGGCCCAAGGTCA+CGG | + | chr1_2:15298283-15298302 | None:intergenic | 55.0% | |
| TAGAACGGACGACGGTGATG+TGG | + | chr1_2:15298311-15298330 | None:intergenic | 55.0% | |
| AGGGGTGAAATTGCTCGGAG+GGG | + | chr1_2:15299044-15299063 | None:intergenic | 55.0% | |
| ATCGTTAGGATGTCCGTGCC+AGG | + | chr1_2:15299175-15299194 | None:intergenic | 55.0% | |
| TACATCGGCACTAGTGTGCG+AGG | + | chr1_2:15299451-15299470 | None:intergenic | 55.0% | |
| !! | TTGGAGGCGTCTGGTATCCA+AGG | + | chr1_2:15299659-15299678 | None:intergenic | 55.0% |
| !! | AGGTACTAGTTGGAGGCGTC+TGG | + | chr1_2:15299668-15299687 | None:intergenic | 55.0% |
| TGGAGGGAGGTGACATGTAC+GGG | - | chr1_2:15299985-15300004 | Msa0058740:intron | 55.0% | |
| ! | GGTGTTGGGGTCATCTAGAG+TGG | + | chr1_2:15300054-15300073 | None:intergenic | 55.0% |
| TTAATCTGTTGGACCGGCCC+TGG | + | chr1_2:15300182-15300201 | None:intergenic | 55.0% | |
| GGCCGGTCCAACAGATTAAG+AGG | - | chr1_2:15300183-15300202 | Msa0058740:intron | 55.0% | |
| ! | AGTGGGTGGTCTTGCCAAGT+TGG | + | chr1_2:15300519-15300538 | None:intergenic | 55.0% |
| TCTAGGCAACAGTGAACCCC+CGG | - | chr1_2:15301145-15301164 | Msa0058740:CDS | 55.0% | |
| GGGGCTAACATCTTAGCTGG+CGG | - | chr1_2:15301595-15301614 | Msa0058740:intron | 55.0% | |
| GGGCTAACATCTTAGCTGGC+GGG | - | chr1_2:15301596-15301615 | Msa0058740:intron | 55.0% | |
| GGCTAACATCTTAGCTGGCG+GGG | - | chr1_2:15301597-15301616 | Msa0058740:intron | 55.0% | |
| ! | TTGGGCCTCTCATTGGTGGT+GGG | - | chr1_2:15301707-15301726 | Msa0058740:CDS | 55.0% |
| ATGGCCACCGGAAACGTGAC+CGG | + | chr1_2:15298250-15298269 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | + | chr1_2:15298262-15298281 | None:intergenic | 60.0% | |
| GTGACCTTGGGCCTCCTTGT+TGG | - | chr1_2:15298282-15298301 | Msa0058740:intron | 60.0% | |
| ACCTTGGGCCTCCTTGTTGG+CGG | - | chr1_2:15298285-15298304 | Msa0058740:intron | 60.0% | |
| TGATGTGGCCGCCAACAAGG+AGG | + | chr1_2:15298296-15298315 | None:intergenic | 60.0% | |
| !! | ATGGTGGTTGGCTTGGAGGG+AGG | - | chr1_2:15299972-15299991 | Msa0058740:intron | 60.0% |
| CCTCCATAACTCACCAGGGC+CGG | - | chr1_2:15300166-15300185 | Msa0058740:intron | 60.0% | |
| GGGCCAAGCAACCCAAGCAA+GGG | + | chr1_2:15300442-15300461 | None:intergenic | 60.0% | |
| AGGGCCAAGCAACCCAAGCA+AGG | + | chr1_2:15300443-15300462 | None:intergenic | 60.0% | |
| ! | GCTTGGGTTGCTTGGCCCTT+AGG | - | chr1_2:15300444-15300463 | Msa0058740:intron | 60.0% |
| TGTGAGTAGGGCCGGCCTAA+GGG | + | chr1_2:15300462-15300481 | None:intergenic | 60.0% | |
| GCAACAGTGAACCCCCGGAA+CGG | - | chr1_2:15301150-15301169 | Msa0058740:CDS | 60.0% | |
| ! | TGGGTTGGGCCTCTCATTGG+TGG | - | chr1_2:15301703-15301722 | Msa0058740:CDS | 60.0% |
| GTTGGGCCTCTCATTGGTGG+TGG | - | chr1_2:15301706-15301725 | Msa0058740:CDS | 60.0% | |
| GCAAGCCCACCACCAATGAG+AGG | + | chr1_2:15301715-15301734 | None:intergenic | 60.0% | |
| !! | CTCATTGGTGGTGGGCTTGC+TGG | - | chr1_2:15301715-15301734 | Msa0058740:CDS | 60.0% |
| AAGGAGGCCCAAGGTCACGG+CGG | + | chr1_2:15298280-15298299 | None:intergenic | 65.0% | |
| CGGTGATGTGGCCGCCAACA+AGG | + | chr1_2:15298299-15298318 | None:intergenic | 65.0% | |
| CCGGCCCTGGTGAGTTATGG+AGG | + | chr1_2:15300169-15300188 | None:intergenic | 65.0% | |
| GGACCGGCCCTGGTGAGTTA+TGG | + | chr1_2:15300172-15300191 | None:intergenic | 65.0% | |
| GGGTTGCTTGGCCCTTAGGC+CGG | - | chr1_2:15300448-15300467 | Msa0058740:intron | 65.0% | |
| GTGTGAGTAGGGCCGGCCTA+AGG | + | chr1_2:15300463-15300482 | None:intergenic | 65.0% | |
| TTAGCTGGCGGGGCTTTCGC+AGG | - | chr1_2:15301607-15301626 | Msa0058740:intron | 65.0% | |
| TCCGCCGGTCACGTTTCCGG+TGG | - | chr1_2:15298243-15298262 | Msa0058740:intron | 70.0% | |
| GCCACCGGAAACGTGACCGG+CGG | + | chr1_2:15298247-15298266 | None:intergenic | 70.0% | |
| AGGAGGCCCAAGGTCACGGC+GGG | + | chr1_2:15298279-15298298 | None:intergenic | 70.0% | |
| GCCGCCAACAAGGAGGCCCA+AGG | + | chr1_2:15298289-15298308 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15297499 | 15301883 | 15297499 | ID=Msa0058740;Name=Msa0058740 |
| chr1_2 | mRNA | 15297499 | 15301883 | 15297499 | ID=Msa0058740-mRNA-1;Parent=Msa0058740;Name=Msa0058740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107|1|1|1|1|1|3|76|247 |
| chr1_2 | exon | 15297499 | 15297952 | 15297499 | ID=Msa0058740-mRNA-1:exon:6201;Parent=Msa0058740-mRNA-1 |
| chr1_2 | exon | 15300978 | 15301216 | 15300978 | ID=Msa0058740-mRNA-1:exon:6200;Parent=Msa0058740-mRNA-1 |
| chr1_2 | exon | 15301650 | 15301883 | 15301650 | ID=Msa0058740-mRNA-1:exon:6199;Parent=Msa0058740-mRNA-1 |
| chr1_2 | five_prime_UTR | 15301777 | 15301883 | 15301777 | ID=Msa0058740-mRNA-1:five_prime_utr;Parent=Msa0058740-mRNA-1 |
| chr1_2 | CDS | 15301650 | 15301776 | 15301650 | ID=Msa0058740-mRNA-1:cds;Parent=Msa0058740-mRNA-1 |
| chr1_2 | CDS | 15300978 | 15301216 | 15300978 | ID=Msa0058740-mRNA-1:cds;Parent=Msa0058740-mRNA-1 |
| chr1_2 | CDS | 15297575 | 15297952 | 15297575 | ID=Msa0058740-mRNA-1:cds;Parent=Msa0058740-mRNA-1 |
| chr1_2 | three_prime_UTR | 15297499 | 15297574 | 15297499 | ID=Msa0058740-mRNA-1:three_prime_utr;Parent=Msa0058740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
