AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413900 MtrunA17_Chr4g0059991 94.444 576 30 2 1 576 1 574 0.0 1119
Msa1413900 MtrunA17_Chr4g0059971 67.759 580 178 3 3 575 7 584 0.0 842
Msa1413900 MtrunA17_Chr4g0059981 66.899 574 182 3 7 575 11 581 0.0 806
Msa1413900 MtrunA17_Chr5g0415791 47.826 552 278 5 28 576 34 578 0.0 544
Msa1413900 MtrunA17_Chr4g0060001 42.190 557 307 6 12 565 18 562 3.41e-156 461
Msa1413900 MtrunA17_Chr8g0362801 45.053 475 243 7 111 578 1 464 3.19e-147 434
Msa1413900 MtrunA17_Chr8g0362781 37.973 582 339 8 7 575 9 581 6.01e-146 434
Msa1413900 MtrunA17_Chr7g0240271 39.130 575 335 7 1 570 1 565 2.15e-141 423
Msa1413900 MtrunA17_Chr8g0390331 40.806 571 316 10 5 572 2 553 7.40e-139 416
Msa1413900 MtrunA17_Chr5g0422881 37.177 581 337 8 3 575 4 564 5.82e-135 406
Msa1413900 MtrunA17_Chr7g0240281 37.889 578 344 8 1 572 1 569 2.69e-133 402
Msa1413900 MtrunA17_Chr7g0255621 38.448 567 328 10 18 577 15 567 4.61e-130 394
Msa1413900 MtrunA17_Chr8g0375311 36.833 562 339 7 17 575 34 582 1.42e-128 390
Msa1413900 MtrunA17_Chr4g0005901 37.088 577 346 9 1 575 10 571 5.09e-128 388
Msa1413900 MtrunA17_Chr3g0104011 37.409 548 330 5 29 575 28 563 1.17e-127 387
Msa1413900 MtrunA17_Chr8g0375351 35.602 573 347 10 4 573 27 580 3.42e-126 384
Msa1413900 MtrunA17_Chr7g0255601 36.742 577 347 10 7 577 10 574 7.56e-126 384
Msa1413900 MtrunA17_Chr7g0241741 36.738 558 336 6 18 575 21 561 2.93e-125 380
Msa1413900 MtrunA17_Chr8g0375341 34.940 581 354 9 3 575 18 582 1.44e-124 379
Msa1413900 MtrunA17_Chr8g0375321 35.605 587 344 12 2 575 14 579 3.25e-124 378
Msa1413900 MtrunA17_Chr2g0331511 37.128 571 339 10 12 572 2 562 9.58e-124 379
Msa1413900 MtrunA17_Chr1g0147631 37.217 575 333 10 8 568 1 561 1.13e-123 377
Msa1413900 MtrunA17_Chr4g0003761 35.325 569 353 9 6 572 14 569 1.19e-123 377
Msa1413900 MtrunA17_Chr2g0331521 36.870 575 341 11 8 572 1 563 1.84e-123 377
Msa1413900 MtrunA17_Chr7g0255611 35.223 582 358 10 1 577 9 576 2.79e-121 371
Msa1413900 MtrunA17_Chr8g0375361 37.112 547 334 6 29 575 45 581 1.19e-120 369
Msa1413900 MtrunA17_Chr3g0142101 35.450 567 340 9 10 575 25 566 6.40e-118 362
Msa1413900 MtrunA17_Chr3g0142091 34.300 586 366 4 7 592 10 576 1.15e-117 361
Msa1413900 MtrunA17_Chr5g0415841 38.462 468 276 5 111 575 1 459 1.85e-117 357
Msa1413900 MtrunA17_Chr8g0375291 35.663 558 339 6 17 569 34 576 2.70e-117 360
Msa1413900 MtrunA17_Chr8g0375331 36.237 574 332 12 15 575 14 566 3.03e-117 360
Msa1413900 MtrunA17_Chr2g0331461 35.540 574 346 8 7 572 9 566 1.18e-112 350
Msa1413900 MtrunA17_Chr2g0331481 34.495 574 352 8 7 572 9 566 2.97e-112 349
Msa1413900 MtrunA17_Chr7g0240181 39.262 461 266 6 114 570 4 454 8.25e-112 343
Msa1413900 MtrunA17_Chr7g0235521 39.262 461 266 6 114 570 4 454 1.19e-111 343
Msa1413900 MtrunA17_Chr7g0240211 39.262 461 266 6 114 570 4 454 1.32e-111 342
Msa1413900 MtrunA17_Chr7g0240131 39.046 461 267 6 114 570 4 454 2.86e-110 339
Msa1413900 MtrunA17_Chr2g0331471 34.768 581 348 10 9 572 63 629 7.80e-110 345
Msa1413900 MtrunA17_Chr1g0157601 33.157 567 363 10 8 572 1 553 1.97e-109 340
Msa1413900 MtrunA17_Chr5g0400371 32.702 581 372 8 3 573 85 656 1.08e-107 338
Msa1413900 MtrunA17_Chr7g0261811 33.569 566 352 8 15 574 19 566 3.21e-107 335
Msa1413900 MtrunA17_Chr5g0399061 33.755 554 348 8 28 575 32 572 9.12e-107 333
Msa1413900 MtrunA17_Chr5g0399071 31.986 569 370 7 12 575 14 570 1.35e-106 333
Msa1413900 MtrunA17_Chr1g0157611 33.627 568 360 9 8 572 1 554 2.67e-105 329
Msa1413900 MtrunA17_Chr4g0008651 35.337 549 336 9 28 575 39 569 7.78e-105 328
Msa1413900 MtrunA17_Chr1g0177591 32.812 576 347 10 5 572 21 564 1.27e-104 327
Msa1413900 MtrunA17_Chr7g0214461 31.095 566 374 5 8 573 63 612 1.22e-103 327
Msa1413900 MtrunA17_Chr3g0114501 35.572 551 334 10 29 575 28 561 1.17e-102 323
Msa1413900 MtrunA17_Chr4g0054891 32.967 546 353 4 29 573 116 649 1.30e-102 325
Msa1413900 MtrunA17_Chr3g0112611 35.025 591 346 14 1 575 1 569 6.03e-102 321
Msa1413900 MtrunA17_Chr7g0240381 33.618 586 356 11 3 582 7 565 1.79e-101 320
Msa1413900 MtrunA17_Chr3g0077151 34.276 566 321 9 17 575 22 543 3.69e-101 318
Msa1413900 MtrunA17_Chr3g0112671 33.220 590 355 13 2 580 4 565 1.16e-100 317
Msa1413900 MtrunA17_Chr7g0240151 37.149 463 259 7 114 572 4 438 1.24e-100 313
Msa1413900 MtrunA17_Chr4g0056431 35.870 552 342 8 28 575 30 573 1.68e-100 317
Msa1413900 MtrunA17_Chr1g0157621 33.396 530 339 8 44 572 1 517 1.37e-99 314
Msa1413900 MtrunA17_Chr7g0261771 33.575 551 344 9 29 574 37 570 5.84e-99 313
Msa1413900 MtrunA17_Chr2g0326211 34.948 578 337 11 5 575 2 547 2.28e-98 310
Msa1413900 MtrunA17_Chr7g0218851 31.383 564 369 6 12 573 35 582 4.93e-98 311
Msa1413900 MtrunA17_Chr1g0166791 32.180 578 374 8 15 589 16 578 4.60e-97 308
Msa1413900 MtrunA17_Chr7g0261881 31.634 569 359 8 15 574 19 566 7.14e-97 308
Msa1413900 MtrunA17_Chr4g0014841 34.035 570 324 12 25 578 21 554 1.10e-96 306
Msa1413900 MtrunA17_Chr7g0217461 32.907 547 360 5 29 574 30 570 1.59e-96 307
Msa1413900 MtrunA17_Chr5g0439381 33.390 584 344 9 28 605 33 577 2.87e-95 303
Msa1413900 MtrunA17_Chr1g0187241 31.383 564 371 6 15 576 18 567 6.12e-95 303
Msa1413900 MtrunA17_Chr8g0353031 32.368 587 341 9 8 575 1 550 7.41e-95 302
Msa1413900 MtrunA17_Chr1g0213711 31.429 560 362 7 17 573 15 555 9.18e-95 302
Msa1413900 MtrunA17_Chr2g0325951 33.333 579 345 13 5 575 2 547 1.61e-94 300
Msa1413900 MtrunA17_Chr4g0063591 34.358 553 338 11 28 575 27 559 3.05e-94 300
Msa1413900 MtrunA17_Chr4g0014791 34.039 567 318 11 25 574 21 548 2.63e-93 297
Msa1413900 MtrunA17_Chr4g0014871 32.451 567 332 11 25 575 22 553 6.49e-93 296
Msa1413900 MtrunA17_Chr4g0014781 33.628 565 331 10 17 574 23 550 2.83e-92 295
Msa1413900 MtrunA17_Chr2g0325961 33.449 574 352 10 5 575 2 548 3.96e-92 294
Msa1413900 MtrunA17_Chr7g0261851 31.771 576 371 8 4 574 9 567 4.74e-92 295
Msa1413900 MtrunA17_Chr7g0214731 32.447 564 348 8 28 575 66 612 5.33e-91 294
Msa1413900 MtrunA17_Chr4g0014801 33.635 553 323 10 29 574 35 550 1.39e-90 290
Msa1413900 MtrunA17_Chr7g0261791 30.265 565 373 7 15 574 21 569 6.63e-88 285
Msa1413900 MtrunA17_Chr1g0193391 32.246 552 343 11 28 575 22 546 9.69e-88 284
Msa1413900 MtrunA17_Chr1g0166741 32.448 527 331 8 28 551 32 536 1.61e-87 283
Msa1413900 MtrunA17_Chr2g0276751 30.590 559 347 9 24 575 39 563 1.99e-87 283
Msa1413900 MtrunA17_Chr3g0082631 37.089 426 257 5 155 575 40 459 6.16e-87 278
Msa1413900 MtrunA17_Chr1g0166711 31.542 577 378 6 15 589 17 578 3.30e-86 280
Msa1413900 MtrunA17_Chr7g0271221 31.763 573 355 13 11 575 2 546 5.96e-86 279
Msa1413900 MtrunA17_Chr4g0011471 30.370 540 359 8 38 573 31 557 1.06e-85 278
Msa1413900 MtrunA17_Chr3g0133341 32.258 558 342 14 28 575 19 550 2.89e-85 276
Msa1413900 MtrunA17_Chr1g0177611 33.333 459 273 8 119 572 5 435 6.69e-85 272
Msa1413900 MtrunA17_Chr1g0166771 31.731 520 330 8 41 557 9 506 2.56e-83 271
Msa1413900 MtrunA17_Chr2g0284701 30.324 587 387 10 3 575 10 588 1.21e-82 271
Msa1413900 MtrunA17_Chr1g0177631 32.462 459 277 8 119 572 5 435 3.29e-79 257
Msa1413900 MtrunA17_Chr7g0261661 31.478 467 302 7 111 574 1 452 4.08e-78 256
Msa1413900 MtrunA17_Chr4g0069581 31.111 540 339 11 42 575 5 517 9.76e-78 257
Msa1413900 MtrunA17_Chr5g0415961 28.988 583 364 8 17 576 18 573 1.67e-76 254
Msa1413900 MtrunA17_Chr4g0014861 32.892 453 274 9 133 578 4 433 2.38e-76 249
Msa1413900 MtrunA17_Chr8g0362711 31.261 563 376 8 17 576 18 572 3.35e-76 253
Msa1413900 MtrunA17_Chr1g0166731 32.780 482 307 6 110 589 9 475 2.74e-72 240
Msa1413900 MtrunA17_Chr8g0379971 28.788 594 372 10 17 575 14 591 6.14e-72 242
Msa1413900 MtrunA17_Chr4g0011041 27.395 595 396 12 2 577 4 581 1.51e-71 241
Msa1413900 MtrunA17_Chr7g0261751 29.175 473 288 6 15 450 23 485 1.49e-63 218
Msa1413900 MtrunA17_Chr8g0379991 27.622 572 366 11 44 575 1 564 4.17e-62 215
Msa1413900 MtrunA17_Chr6g0451841 29.583 551 333 13 42 575 24 536 4.27e-62 214
Msa1413900 MtrunA17_Chr3g0112631 37.282 287 164 7 298 580 3 277 2.79e-59 200
Msa1413900 MtrunA17_Chr3g0142111 33.648 318 203 3 1 313 19 333 2.30e-53 185
Msa1413900 MtrunA17_Chr7g0261731 31.003 329 213 4 29 354 37 354 1.06e-52 184
Msa1413900 MtrunA17_Chr3g0142121 36.101 277 158 6 299 575 11 268 1.45e-52 181
Msa1413900 MtrunA17_Chr1g0147591 42.365 203 103 7 150 347 7 200 1.55e-44 157
Msa1413900 MtrunA17_Chr4g0060071 31.757 296 175 5 287 576 25 299 1.02e-40 150
Msa1413900 MtrunA17_Chr7g0234181 26.374 455 288 9 118 572 6 413 1.56e-36 141
Msa1413900 MtrunA17_Chr7g0234381 26.350 463 294 10 110 572 3 418 1.37e-35 139
Msa1413900 MtrunA17_Chr7g0234151 25.486 463 298 9 110 572 3 418 9.91e-34 133
Msa1413900 MtrunA17_Chr7g0261721 34.328 201 127 3 375 574 4 200 3.22e-32 124
Msa1413900 MtrunA17_Chr2g0326221 31.489 235 128 5 343 577 24 225 5.00e-31 120
Msa1413900 MtrunA17_Chr3g0112651 31.847 157 103 2 110 266 21 173 1.23e-22 96.7
Msa1413900 MtrunA17_Chr8g0362791 50.602 83 41 0 27 109 40 122 9.29e-22 92.0
Msa1413900 MtrunA17_Chr8g0382591 38.655 119 69 4 298 414 3 119 4.61e-19 84.0
Msa1413900 MtrunA17_Chr7g0261831 33.129 163 91 4 252 410 1 149 2.07e-17 81.3
Msa1413900 MtrunA17_Chr7g0240221 33.636 110 72 1 1 109 4 113 7.82e-16 73.9
Msa1413900 MtrunA17_Chr7g0240191 33.636 110 72 1 1 109 4 113 7.82e-16 73.9
Msa1413900 MtrunA17_Chr7g0240161 33.636 110 72 1 1 109 4 113 7.82e-16 73.9
Msa1413900 MtrunA17_Chr7g0240141 33.636 110 72 1 1 109 4 113 8.95e-16 73.9
Msa1413900 MtrunA17_Chr4g0060061 32.308 130 86 2 129 257 2 130 9.04e-16 74.3
Msa1413900 MtrunA17_Chr1g0147581 35.200 125 71 3 426 549 1 116 1.47e-15 73.2
Msa1413900 MtrunA17_Chr7g0235511 33.929 112 71 2 1 109 4 115 1.73e-14 70.5
Msa1413900 MtrunA17_Chr5g0415851 39.437 71 43 0 37 107 6 76 6.53e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413900 AT5G62680.1 60.211 568 219 4 11 576 31 593 0.0 720
Msa1413900 AT1G18880.1 58.494 571 229 4 7 575 2 566 0.0 710
Msa1413900 AT3G47960.1 60.326 552 214 3 26 576 62 609 0.0 694
Msa1413900 AT1G69870.1 47.368 570 275 8 12 575 44 594 0.0 535
Msa1413900 AT1G27080.1 42.451 563 305 8 16 576 4 549 2.14e-151 448
Msa1413900 AT5G28470.2 39.344 549 314 5 28 572 20 553 1.30e-144 431
Msa1413900 AT5G28470.1 39.344 549 312 6 28 572 20 551 7.01e-142 423
Msa1413900 AT1G68570.1 40.385 572 329 8 9 575 4 568 4.98e-141 422
Msa1413900 AT1G27080.2 41.985 524 286 7 54 576 1 507 6.73e-137 410
Msa1413900 AT1G68570.2 40.665 541 312 7 37 575 5 538 4.94e-136 409
Msa1413900 AT1G69860.1 38.368 576 324 7 2 575 3 549 3.23e-132 399
Msa1413900 AT1G52190.1 34.957 575 355 10 8 572 1 566 6.46e-130 394
Msa1413900 AT3G54140.1 36.022 558 342 9 18 575 21 563 7.37e-126 382
Msa1413900 AT3G54140.2 36.022 558 342 9 18 575 21 563 7.37e-126 382
Msa1413900 AT5G01180.2 35.714 574 356 8 3 575 2 563 2.92e-124 379
Msa1413900 AT5G01180.3 35.714 574 356 8 3 575 2 563 2.92e-124 379
Msa1413900 AT5G01180.1 35.714 574 356 8 3 575 2 563 2.92e-124 379
Msa1413900 AT3G16180.1 35.088 570 353 9 9 572 7 565 5.19e-123 376
Msa1413900 AT2G02040.1 36.197 547 339 6 29 575 45 581 7.70e-121 370
Msa1413900 AT1G62200.1 36.201 558 338 6 22 577 49 590 4.06e-119 366
Msa1413900 AT1G62200.2 34.812 586 337 8 22 577 49 619 2.07e-114 355
Msa1413900 AT1G62200.3 34.812 586 337 8 22 577 63 633 6.81e-114 353
Msa1413900 AT3G54450.1 34.197 579 333 10 11 577 2 544 1.74e-110 342
Msa1413900 AT3G45650.1 33.972 574 346 8 6 577 3 545 3.80e-109 339
Msa1413900 AT3G45660.1 34.155 568 341 8 12 577 8 544 1.95e-107 335
Msa1413900 AT3G45660.3 34.155 568 341 8 12 577 8 544 1.95e-107 335
Msa1413900 AT3G45660.2 34.155 568 341 8 12 577 29 565 2.38e-107 335
Msa1413900 AT3G45650.2 32.500 600 346 9 6 577 3 571 2.95e-103 325
Msa1413900 AT3G45680.1 33.506 579 342 11 6 577 2 544 4.05e-103 323
Msa1413900 AT4G21680.1 33.032 554 358 5 25 574 28 572 4.06e-103 324
Msa1413900 AT3G45720.1 33.750 560 335 9 20 575 13 540 7.87e-102 320
Msa1413900 AT2G40460.1 35.326 552 328 9 29 575 28 555 8.88e-102 321
Msa1413900 AT3G53960.1 33.447 586 362 9 2 575 4 573 4.93e-101 319
Msa1413900 AT2G37900.1 34.301 551 338 9 28 577 41 568 5.58e-101 318
Msa1413900 AT2G02020.1 34.111 557 312 7 19 574 40 542 6.02e-101 317
Msa1413900 AT2G26690.1 33.805 565 354 9 11 573 10 556 9.44e-96 305
Msa1413900 AT1G32450.1 30.120 581 388 6 4 573 9 582 2.53e-95 305
Msa1413900 AT3G21670.1 33.690 561 339 8 28 582 32 565 6.19e-95 303
Msa1413900 AT1G59740.1 31.469 572 370 9 5 571 19 573 7.27e-94 300
Msa1413900 AT2G26690.2 34.694 539 332 9 37 573 3 523 5.51e-93 296
Msa1413900 AT3G45710.1 31.053 570 364 8 9 577 5 546 5.65e-93 297
Msa1413900 AT3G45700.1 32.049 571 350 9 8 577 1 534 6.40e-93 296
Msa1413900 AT2G37900.2 33.925 507 311 9 72 577 6 489 4.54e-92 293
Msa1413900 AT5G13400.1 31.404 570 375 7 15 577 53 613 9.05e-92 296
Msa1413900 AT1G12110.1 31.533 574 365 8 12 575 14 569 1.31e-91 294
Msa1413900 AT2G26690.3 34.594 529 326 9 47 573 1 511 3.74e-90 289
Msa1413900 AT1G22540.1 33.039 566 337 10 17 575 22 552 6.33e-90 289
Msa1413900 AT5G46050.1 33.586 527 334 7 27 551 28 540 2.03e-89 288
Msa1413900 AT1G22550.1 32.870 575 353 9 8 575 11 559 8.22e-89 286
Msa1413900 AT1G72125.1 32.313 588 356 10 8 580 1 561 1.25e-88 286
Msa1413900 AT5G46040.1 30.944 572 372 7 10 576 12 565 1.70e-87 283
Msa1413900 AT5G19640.1 30.530 547 353 8 28 573 62 582 3.53e-87 283
Msa1413900 AT3G45690.1 31.514 568 315 12 12 577 6 501 7.43e-87 280
Msa1413900 AT1G72130.1 31.317 562 332 8 20 575 20 533 8.84e-86 278
Msa1413900 AT1G22570.1 32.186 581 360 10 8 580 11 565 4.47e-85 276
Msa1413900 AT1G33440.1 30.584 582 360 11 5 572 16 567 8.45e-84 274
Msa1413900 AT1G27040.2 30.986 568 356 7 17 574 15 556 8.00e-83 270
Msa1413900 AT1G27040.1 30.986 568 356 7 17 574 19 560 9.92e-83 270
Msa1413900 AT1G22570.2 32.486 551 340 9 36 580 4 528 3.03e-81 265
Msa1413900 AT2G02020.2 32.079 558 301 12 19 574 40 521 4.94e-81 265
Msa1413900 AT1G27040.3 31.502 546 338 7 39 574 9 528 1.69e-80 263
Msa1413900 AT1G72120.1 30.716 573 360 7 9 575 11 552 2.18e-80 264
Msa1413900 AT1G72140.1 29.623 557 340 9 28 574 37 551 1.46e-79 261
Msa1413900 AT1G69850.1 30.000 570 381 7 17 575 17 579 7.57e-79 261
Msa1413900 AT5G46050.2 33.191 467 297 6 111 576 1 453 1.24e-73 243
Msa1413900 AT1G72130.2 31.891 439 255 6 142 574 14 414 4.39e-71 235
Msa1413900 AT1G72130.3 31.891 439 255 6 142 574 14 414 4.39e-71 235
Msa1413900 AT5G62730.1 28.167 600 354 13 9 575 30 585 8.19e-67 229
Msa1413900 AT5G62730.2 28.826 562 339 11 34 575 6 526 4.88e-66 225
Msa1413900 AT5G14940.1 28.727 550 337 15 42 571 24 538 4.07e-61 213
Msa1413900 AT3G25260.1 26.970 571 353 14 8 572 3 515 5.27e-60 208
Msa1413900 AT3G01350.1 27.207 555 352 12 42 573 24 549 1.94e-56 200
Msa1413900 AT3G25280.1 24.913 574 369 16 8 572 1 521 5.42e-49 179
Msa1413900 AT5G11570.1 33.846 260 159 2 313 572 230 476 8.79e-46 169
Msa1413900 AT5G11570.1 33.636 220 138 4 27 243 15 229 2.01e-35 139
Msa1413900 AT2G38100.1 23.801 542 342 21 49 574 14 500 7.45e-25 108
Msa1413900 AT2G38100.3 23.801 542 342 21 49 574 20 506 7.74e-25 108
Msa1413900 AT2G38100.2 23.364 535 342 20 53 571 2 484 1.09e-24 108

Find 132 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCACATTTGCTTCCTTTC+TGG 0.050423 tig0024075:-42940 Msa1413900:intron
CTTCTTTCATTTCCACATTT+TGG 0.089475 tig0024075:+42394 None:intergenic
TTTCTATGTGATACTTATTT+TGG 0.126920 tig0024075:-42984 Msa1413900:CDS
GTTACTTTGTATTGTGTTCT+AGG 0.161441 tig0024075:-39618 Msa1413900:CDS
GTTCTACCAATTTGGGTTTC+AGG 0.174285 tig0024075:-40291 Msa1413900:CDS
TAGTAAGAGTTCTACCAATT+TGG 0.200123 tig0024075:-40299 Msa1413900:CDS
TTGTTTGGAAGTTGTTAATT+TGG 0.214202 tig0024075:-39641 Msa1413900:CDS
TCATTTCTACTACTTGGATT+TGG 0.222031 tig0024075:-42340 Msa1413900:CDS
TTTGAAATTTGTGTTGAAAA+AGG 0.232339 tig0024075:+40197 None:intergenic
AAGACTTCTTCCTAAGGTTT+TGG 0.237682 tig0024075:+43412 None:intergenic
CATTTCTACTACTTGGATTT+GGG 0.250805 tig0024075:-42339 Msa1413900:CDS
TTCTTTCCTGAATCTGTGTT+TGG 0.257557 tig0024075:+42250 None:intergenic
ACTTGAACAATATTTGTTAC+AGG 0.278311 tig0024075:+42028 None:intergenic
ATCTTGCTTACCAATGATAA+AGG 0.299967 tig0024075:+43252 None:intergenic
AGTAAGAGTTCTACCAATTT+GGG 0.305859 tig0024075:-40298 Msa1413900:CDS
TTCAATCCAAACACAGATTC+AGG 0.309118 tig0024075:-42256 Msa1413900:CDS
GAACTTTGAAATAAAGCTTC+TGG 0.322379 tig0024075:-39464 Msa1413900:three_prime_UTR
TGTTTGGAAGTTGTTAATTT+GGG 0.324597 tig0024075:-39640 Msa1413900:CDS
ATTGATTGATTCATGATTCA+TGG 0.332191 tig0024075:+43439 None:intergenic
TCTAATTCTAATAAATACTA+TGG 0.335107 tig0024075:+39406 None:intergenic
AAACTAGTTATTTAATAAGT+TGG 0.336457 tig0024075:-43378 Msa1413900:five_prime_UTR
CGATGTTAAGCCTAACGATA+TGG 0.336603 tig0024075:-40146 Msa1413900:CDS
GATTCATGGGATGATATTAA+AGG 0.338640 tig0024075:+43453 None:intergenic
TTATTACATGATTACTTGTT+TGG 0.345394 tig0024075:-39656 Msa1413900:CDS
CAAATGTCATTTCTACTACT+TGG 0.348911 tig0024075:-42346 Msa1413900:CDS
ATTAAGTTCTAATTAGTTGA+TGG 0.351206 tig0024075:-39492 Msa1413900:exon
AGACCTTGTAACTTAGCATT+TGG 0.352308 tig0024075:-42289 Msa1413900:CDS
TATTGTGTTCTAGGTGGTAT+AGG 0.353937 tig0024075:-39609 Msa1413900:CDS
GAGAATATGAGAAGTCTTGC+AGG 0.364624 tig0024075:-39817 Msa1413900:CDS
TTTCTCATACACCTCAGTTC+AGG 0.371042 tig0024075:-41898 Msa1413900:intron
CTTGGTCTTGGAATTCCTGC+TGG 0.371692 tig0024075:-42124 Msa1413900:CDS
GGATTTGAACGAAGGGAGAT+TGG 0.377692 tig0024075:-39686 Msa1413900:CDS
GTGAGTTGGGCTCTTGGTCT+TGG 0.384641 tig0024075:-42136 Msa1413900:CDS
TCATGTGTTGTTTATTTCAC+TGG 0.387143 tig0024075:-42088 Msa1413900:CDS
AACACCACTAATCTTTGTTT+CGG 0.387631 tig0024075:+39520 None:intergenic
TCTGATGCATTTACTTTGGT+TGG 0.389917 tig0024075:-39871 Msa1413900:CDS
GGATTTGGGCTTATGATAGT+AGG 0.391869 tig0024075:-42325 Msa1413900:CDS
TTTCTCGGTTCAAATCCTAT+AGG 0.394792 tig0024075:+39955 None:intergenic
GAACAAAAGAGACACATCTA+TGG 0.397086 tig0024075:-43347 Msa1413900:CDS
TTTGGACGCTACAAAACTCT+TGG 0.399400 tig0024075:-42966 Msa1413900:CDS
TTAAATCTGCAACAGGGAAT+TGG 0.401616 tig0024075:-39717 Msa1413900:CDS
CTTCTACAAAGAATGGGAAT+TGG 0.402115 tig0024075:-40054 Msa1413900:CDS
TGTTGATTACAATTATTCAT+AGG 0.403883 tig0024075:-39747 Msa1413900:CDS
GAATCAATAGTTTCTTCAAT+TGG 0.404560 tig0024075:-42225 Msa1413900:CDS
AGTATGCCTGAAACCCAAAT+TGG 0.407025 tig0024075:+40285 None:intergenic
ATGGCTATTAATAATCCTAT+AGG 0.413331 tig0024075:-39970 Msa1413900:CDS
AATATTGTCAATATCTTCAA+TGG 0.418148 tig0024075:-43038 Msa1413900:CDS
TTGACGGTTAAATCTGCAAC+AGG 0.418463 tig0024075:-39724 Msa1413900:CDS
AATCACACTTCTACAAAGAA+TGG 0.430866 tig0024075:-40061 Msa1413900:CDS
AATGACATTTGTCCTGTACT+TGG 0.433383 tig0024075:+42358 None:intergenic
GAAGATATTGACAATATTTG+TGG 0.433489 tig0024075:+43043 None:intergenic
TATACAAGTAAATGTGAGTT+GGG 0.433642 tig0024075:-42149 Msa1413900:CDS
AGCTTGGTGTTGATAGAGTA+AGG 0.434780 tig0024075:+41920 None:intergenic
AAGGTCATGCCCTTTATCAT+TGG 0.435084 tig0024075:-43262 Msa1413900:intron
GGATCAGATGCAGAACCGTC+AGG 0.440378 tig0024075:+40366 None:intergenic
ATCAATAATTCCAAAACCTT+AGG 0.459761 tig0024075:-43422 Msa1413900:five_prime_UTR
TATGTGAAGGTAAAAGCAAC+AGG 0.472904 tig0024075:-42055 Msa1413900:CDS
ATTCCTCAGTTAGCACTAGC+AGG 0.477266 tig0024075:-39898 Msa1413900:CDS
CTTATGATAGTAGGAGCTGC+AGG 0.479508 tig0024075:-42316 Msa1413900:CDS
GTAAATGTGAGTTGGGCTCT+TGG 0.482055 tig0024075:-42142 Msa1413900:CDS
TTCGGTCCGATTGAAGTGCT+TGG 0.491406 tig0024075:+40220 None:intergenic
TACAATTATTCATAGGTTGA+CGG 0.491870 tig0024075:-39740 Msa1413900:CDS
ATCACACTTCTACAAAGAAT+GGG 0.492502 tig0024075:-40060 Msa1413900:CDS
TCTTGCTTACCAATGATAAA+GGG 0.492775 tig0024075:+43253 None:intergenic
TAGTATCCGGTGTGGTAGAA+TGG 0.495604 tig0024075:-40005 Msa1413900:CDS
AACACAGATTCAGGAAAGAA+AGG 0.495614 tig0024075:-42247 Msa1413900:CDS
GGCGCGATATCTTCCATGTC+GGG 0.500635 tig0024075:-39931 Msa1413900:CDS
GTTTCAAATAACAACTATAG+AGG 0.503860 tig0024075:-43289 Msa1413900:CDS
AGTCTTCCAAGCACTTCAAT+CGG 0.504676 tig0024075:-40226 Msa1413900:CDS
CAATCCGAAACAAAGATTAG+TGG 0.504914 tig0024075:-39524 Msa1413900:CDS
AGAATAAAGACTTCTTCCTA+AGG 0.505649 tig0024075:+43406 None:intergenic
GCAAGACTTCTCATATTCTC+AGG 0.505728 tig0024075:+39820 None:intergenic
ATACTATGCATGTTAGTATC+CGG 0.511470 tig0024075:-40018 Msa1413900:CDS
AGACTAACACTGTGTTCTGT+TGG 0.513814 tig0024075:+40244 None:intergenic
TATATGTGGCTATAAAGAAA+AGG 0.514570 tig0024075:-42003 Msa1413900:CDS
TTGATTGATTCATGATTCAT+GGG 0.518818 tig0024075:+43440 None:intergenic
TTTGAGAAGCTAGGAGCCAT+TGG 0.519801 tig0024075:-43125 Msa1413900:CDS
AATGATGATGGTACTGATCA+AGG 0.520199 tig0024075:-39578 Msa1413900:CDS
AGATTGGTAACCATATCGTT+AGG 0.522148 tig0024075:+40136 None:intergenic
GAAAAGTGACAAAGAAAGTG+TGG 0.527633 tig0024075:-43323 Msa1413900:CDS
ATATACAAGTAAATGTGAGT+TGG 0.529836 tig0024075:-42150 Msa1413900:CDS
ATAGGATTTGAACCGAGAAA+AGG 0.541636 tig0024075:-39952 Msa1413900:CDS
ACGGTTCTGCATCTGATCCA+TGG 0.542827 tig0024075:-40362 Msa1413900:CDS
AAGATCGTGTAAGAAGCTGC+AGG 0.544793 tig0024075:+40171 None:intergenic
TGTTATAATTGATACCAGAA+AGG 0.546328 tig0024075:+42926 None:intergenic
GCTCCAAATGCTAAGTTACA+AGG 0.548040 tig0024075:+42286 None:intergenic
AATGAAACATTTGAGAAGCT+AGG 0.548041 tig0024075:-43134 Msa1413900:CDS
GAAACTCAATCTACAAGAAG+AGG 0.560510 tig0024075:-41981 Msa1413900:CDS
CTGAGGTGTATGAGAAAGCT+TGG 0.564035 tig0024075:+41904 None:intergenic
AACCATTTGTGCAAAAGTGA+AGG 0.567355 tig0024075:+42192 None:intergenic
TTGTGGCTGTAATACTGCTA+AGG 0.568792 tig0024075:+43060 None:intergenic
AACAGGGAATTGGTTACCAC+AGG 0.570819 tig0024075:-39707 Msa1413900:CDS
CAAATAACAACTATAGAGGA+TGG 0.573016 tig0024075:-43285 Msa1413900:CDS
TATAGGATTATTAATAGCCA+TGG 0.573328 tig0024075:+39972 None:intergenic
TTATAATAGCTGCTTTGTCA+AGG 0.575374 tig0024075:+40409 None:intergenic
GAGGTTTGCTAAGGTACCAA+TGG 0.582527 tig0024075:+43109 None:intergenic
AATTCTAATAAATACTATGG+TGG 0.583783 tig0024075:+39409 None:intergenic
GTGTGGTAGAATGGAAAAGA+AGG 0.585909 tig0024075:-39996 Msa1413900:CDS
TAACAACTATAGAGGATGGA+AGG 0.588536 tig0024075:-43281 Msa1413900:CDS
TATTGTTCAAGTGATATATG+TGG 0.591824 tig0024075:-42017 Msa1413900:CDS
TCTATGCAGTATACAACAAG+TGG 0.592491 tig0024075:-40337 Msa1413900:CDS
TATCTTCCATGTCGGGAATG+TGG 0.598260 tig0024075:-39924 Msa1413900:CDS
TTGTTATACAACTAACAGCA+TGG 0.599941 tig0024075:-42435 Msa1413900:CDS
GAAAACAGCATCAAACCAGC+AGG 0.602141 tig0024075:+42109 None:intergenic
AGCATGCATCCACCAAAATG+TGG 0.602631 tig0024075:-42406 Msa1413900:CDS
CTCCCTTCGTTCAAATCCTG+TGG 0.602701 tig0024075:+39691 None:intergenic
ACATGCATAGAACCAAGTAC+AGG 0.603457 tig0024075:-42370 Msa1413900:CDS
ACTTTGTATTGTGTTCTAGG+TGG 0.603924 tig0024075:-39615 Msa1413900:CDS
TGGAAGTAAATATTATGTGA+AGG 0.605535 tig0024075:-42068 Msa1413900:CDS
TAGGTACAAAGGAATGATGA+TGG 0.609559 tig0024075:-39590 Msa1413900:CDS
AATCAACCACATTCCCGACA+TGG 0.611889 tig0024075:+39918 None:intergenic
TACCACAGGATTTGAACGAA+GGG 0.615700 tig0024075:-39693 Msa1413900:CDS
TGTATACTGCATAGATACCA+TGG 0.620158 tig0024075:+40345 None:intergenic
TGGTACCTTAGCAAACCTCT+TGG 0.621497 tig0024075:-43105 Msa1413900:CDS
ATAGACCAAGAGGTTTGCTA+AGG 0.624994 tig0024075:+43100 None:intergenic
ACATAGAAAAGCTCCTAGCA+AGG 0.626725 tig0024075:+42998 None:intergenic
GATCAGATGCAGAACCGTCA+GGG 0.627732 tig0024075:+40367 None:intergenic
TCTAGGTGGTATAGGTACAA+AGG 0.628777 tig0024075:-39601 Msa1413900:CDS
GATGGTACTGATCAAGGTAG+TGG 0.629248 tig0024075:-39572 Msa1413900:CDS
AGGCGCGATATCTTCCATGT+CGG 0.630902 tig0024075:-39932 Msa1413900:CDS
TTACCACAGGATTTGAACGA+AGG 0.642836 tig0024075:-39694 Msa1413900:CDS
AGAATATGAGAAGTCTTGCA+GGG 0.652741 tig0024075:-39816 Msa1413900:CDS
TTATGATAGTAGGAGCTGCA+GGG 0.663873 tig0024075:-42315 Msa1413900:CDS
AAAATCACCGGAAAAGAAGG+CGG 0.665576 tig0024075:-40084 Msa1413900:CDS
CTGTTGTAAGATAGACCAAG+AGG 0.671779 tig0024075:+43090 None:intergenic
AGAATGGAAAAGAAGGACCA+TGG 0.673688 tig0024075:-39989 Msa1413900:CDS
AGATCGTGTAAGAAGCTGCA+GGG 0.675641 tig0024075:+40172 None:intergenic
CAAGACAAAATAAACCCTGA+CGG 0.679950 tig0024075:-40381 Msa1413900:CDS
AATCCTGCTAGTGCTAACTG+AGG 0.715827 tig0024075:+39895 None:intergenic
ATGCATGTTAGTATCCGGTG+TGG 0.719406 tig0024075:-40013 Msa1413900:CDS
GTGGTTGGTTACCTGAACTG+AGG 0.724471 tig0024075:+41887 None:intergenic
TGACGGTTAAATCTGCAACA+GGG 0.748913 tig0024075:-39723 Msa1413900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTTGAATATTGTTTA+AGG - tig0024075:40041-40060 Msa1413900:CDS 10.0%
!! CTTATAAAATACAATTTAAT+TGG - tig0024075:40957-40976 Msa1413900:intron 10.0%
!!! ACAAATTTCTTTTAAAAAAA+AGG + tig0024075:43457-43476 None:intergenic 10.0%
!! AAACTAGTTATTTAATAAGT+TGG - tig0024075:39372-39391 Msa1413900:three_prime_UTR 15.0%
!! AATTAGTTGAATATTGTTTA+AGG + tig0024075:40156-40175 None:intergenic 15.0%
!!! AGTAAAAATTATTTCTGATA+CGG + tig0024075:40915-40934 None:intergenic 15.0%
!! TTACTTGAAATTAAGTTAAA+GGG - tig0024075:41267-41286 Msa1413900:intron 15.0%
!! AAAGAGAAATAAATAGTTAA+AGG + tig0024075:41443-41462 None:intergenic 15.0%
!!! ACAAAATTATTTTTCGTTAA+TGG + tig0024075:41499-41518 None:intergenic 15.0%
!! TTATTCAAATAAGATAAACA+TGG + tig0024075:41848-41867 None:intergenic 15.0%
!!! ACTATTTTCAATAAACTATT+TGG - tig0024075:41868-41887 Msa1413900:intron 15.0%
!!! CTATTTTCAATAAACTATTT+GGG - tig0024075:41869-41888 Msa1413900:intron 15.0%
!! TCTATTATCAAATAGAATTT+GGG + tig0024075:41896-41915 None:intergenic 15.0%
!! TTCTATTATCAAATAGAATT+TGG + tig0024075:41897-41916 None:intergenic 15.0%
!!! CTATTTTTGTAATCAAATTA+AGG + tig0024075:42012-42031 None:intergenic 15.0%
!! TCTAATTCTAATAAATACTA+TGG + tig0024075:43347-43366 None:intergenic 15.0%
!! TAGAATTAGAAAGAAAAATA+AGG - tig0024075:43357-43376 Msa1413900:exon 15.0%
!!! AATAAGGTATTATTTTTTCT+TGG - tig0024075:43373-43392 Msa1413900:five_prime_UTR 15.0%
!! AATATTGTCAATATCTTCAA+TGG - tig0024075:39712-39731 Msa1413900:CDS 20.0%
!!! TTTCTATGTGATACTTATTT+TGG - tig0024075:39766-39785 Msa1413900:CDS 20.0%
!!! ACAAGTTAATTATGATTTGT+TGG + tig0024075:40128-40147 None:intergenic 20.0%
!!! AATTTAATTGGCTTATTTGT+TGG - tig0024075:40969-40988 Msa1413900:intron 20.0%
!! GTTACTTGAAATTAAGTTAA+AGG - tig0024075:41266-41285 Msa1413900:intron 20.0%
!!! TTATTTTTCGTTAATGGTAT+TGG + tig0024075:41493-41512 None:intergenic 20.0%
!! CTATTATCAAATAGAATTTG+GGG + tig0024075:41895-41914 None:intergenic 20.0%
!! TATATATCTGTGTGTTTATA+TGG - tig0024075:41923-41942 Msa1413900:CDS 20.0%
!! TTGTAATCAAATTAAGGTTA+AGG + tig0024075:42006-42025 None:intergenic 20.0%
!! CTCATATTATCTTAGAATTT+AGG - tig0024075:42144-42163 Msa1413900:CDS 20.0%
!! TCTAATTTAACCAACAAAAT+CGG - tig0024075:42172-42191 Msa1413900:CDS 20.0%
!! TGAGATATGATATAAAAATG+TGG + tig0024075:42220-42239 None:intergenic 20.0%
!! TTTATGAAGAAATCAACAAA+TGG + tig0024075:42283-42302 None:intergenic 20.0%
!! TGATTTCTTCATAAAATGAT+TGG - tig0024075:42288-42307 Msa1413900:CDS 20.0%
!! AAATGTTCATATGAATTAAC+AGG - tig0024075:42316-42335 Msa1413900:CDS 20.0%
!!! TTTGAAATTTGTGTTGAAAA+AGG + tig0024075:42556-42575 None:intergenic 20.0%
!!! TGTTGATTACAATTATTCAT+AGG - tig0024075:43003-43022 Msa1413900:CDS 20.0%
!! TTATTACATGATTACTTGTT+TGG - tig0024075:43094-43113 Msa1413900:CDS 20.0%
!!! ATTAAGTTCTAATTAGTTGA+TGG - tig0024075:43258-43277 Msa1413900:intron 20.0%
!! AAAAACAAAAATTACTATGG+TGG + tig0024075:43313-43332 None:intergenic 20.0%
!! AGCAAAAACAAAAATTACTA+TGG + tig0024075:43316-43335 None:intergenic 20.0%
!! AATTCTAATAAATACTATGG+TGG + tig0024075:43344-43363 None:intergenic 20.0%
!! TTGATTGATTCATGATTCAT+GGG + tig0024075:39313-39332 None:intergenic 25.0%
!! ATTGATTGATTCATGATTCA+TGG + tig0024075:39314-39333 None:intergenic 25.0%
! ATCAATAATTCCAAAACCTT+AGG - tig0024075:39328-39347 Msa1413900:three_prime_UTR 25.0%
! GTTTCAAATAACAACTATAG+AGG - tig0024075:39461-39480 Msa1413900:three_prime_UTR 25.0%
! AATAATAAGAGTAACATGCA+TGG + tig0024075:39546-39565 None:intergenic 25.0%
!!! AATTAATTTGCATATCATGC+AGG - tig0024075:39592-39611 Msa1413900:CDS 25.0%
! GAAGATATTGACAATATTTG+TGG + tig0024075:39710-39729 None:intergenic 25.0%
! TGTTATAATTGATACCAGAA+AGG + tig0024075:39827-39846 None:intergenic 25.0%
! GTGATCAAATACATATGATA+TGG + tig0024075:39993-40012 None:intergenic 25.0%
!! TTTAACTAGTTAGCTTAGTT+AGG + tig0024075:40097-40116 None:intergenic 25.0%
!!! TAACTCTTTGATTTTGAAAC+AGG - tig0024075:40286-40305 Msa1413900:CDS 25.0%
!!! AACTCTTTGATTTTGAAACA+GGG - tig0024075:40287-40306 Msa1413900:CDS 25.0%
! GAATCAATAGTTTCTTCAAT+TGG - tig0024075:40525-40544 Msa1413900:intron 25.0%
! ATATACAAGTAAATGTGAGT+TGG - tig0024075:40600-40619 Msa1413900:intron 25.0%
! TATACAAGTAAATGTGAGTT+GGG - tig0024075:40601-40620 Msa1413900:intron 25.0%
! TGGAAGTAAATATTATGTGA+AGG - tig0024075:40682-40701 Msa1413900:intron 25.0%
!! ACTTGAACAATATTTGTTAC+AGG + tig0024075:40725-40744 None:intergenic 25.0%
! TATTGTTCAAGTGATATATG+TGG - tig0024075:40733-40752 Msa1413900:intron 25.0%
! TATATGTGGCTATAAAGAAA+AGG - tig0024075:40747-40766 Msa1413900:intron 25.0%
! TGACGTAAAAAGAAAATGAT+GGG + tig0024075:41042-41061 None:intergenic 25.0%
! ATGACGTAAAAAGAAAATGA+TGG + tig0024075:41043-41062 None:intergenic 25.0%
! GACATAAAAAACGATAATAG+AGG - tig0024075:41238-41257 Msa1413900:intron 25.0%
! GATATGATATAAAAATGTGG+TGG + tig0024075:42217-42236 None:intergenic 25.0%
! AATTTGTGTTGAAAAAGGTT+CGG + tig0024075:42551-42570 None:intergenic 25.0%
! TATAGGATTATTAATAGCCA+TGG + tig0024075:42781-42800 None:intergenic 25.0%
! ATGGCTATTAATAATCCTAT+AGG - tig0024075:42780-42799 Msa1413900:intron 25.0%
!! ATTTTCTGATGCATTTACTT+TGG - tig0024075:42875-42894 Msa1413900:intron 25.0%
!! TACAATTATTCATAGGTTGA+CGG - tig0024075:43010-43029 Msa1413900:CDS 25.0%
! TTGTTTGGAAGTTGTTAATT+TGG - tig0024075:43109-43128 Msa1413900:CDS 25.0%
! TGTTTGGAAGTTGTTAATTT+GGG - tig0024075:43110-43129 Msa1413900:CDS 25.0%
GATTCATGGGATGATATTAA+AGG + tig0024075:39300-39319 None:intergenic 30.0%
AGAATAAAGACTTCTTCCTA+AGG + tig0024075:39347-39366 None:intergenic 30.0%
CAAATAACAACTATAGAGGA+TGG - tig0024075:39465-39484 Msa1413900:three_prime_UTR 30.0%
TCTTGCTTACCAATGATAAA+GGG + tig0024075:39500-39519 None:intergenic 30.0%
ATCTTGCTTACCAATGATAA+AGG + tig0024075:39501-39520 None:intergenic 30.0%
AATGAAACATTTGAGAAGCT+AGG - tig0024075:39616-39635 Msa1413900:CDS 30.0%
AATTTGAATCTCTTCAGAGA+TGG - tig0024075:40211-40230 Msa1413900:CDS 30.0%
!!! ACTCTTTGATTTTGAAACAG+GGG - tig0024075:40288-40307 Msa1413900:CDS 30.0%
TTGTTATACAACTAACAGCA+TGG - tig0024075:40315-40334 Msa1413900:CDS 30.0%
! CTTCTTTCATTTCCACATTT+TGG + tig0024075:40359-40378 None:intergenic 30.0%
! CAAATGTCATTTCTACTACT+TGG - tig0024075:40404-40423 Msa1413900:CDS 30.0%
TCATTTCTACTACTTGGATT+TGG - tig0024075:40410-40429 Msa1413900:CDS 30.0%
CATTTCTACTACTTGGATTT+GGG - tig0024075:40411-40430 Msa1413900:CDS 30.0%
!! TCATGTGTTGTTTATTTCAC+TGG - tig0024075:40662-40681 Msa1413900:intron 30.0%
! AAATACTGGACATTGATTAG+TGG + tig0024075:40885-40904 None:intergenic 30.0%
GATACGGAAGTAAAAAATAC+TGG + tig0024075:40899-40918 None:intergenic 30.0%
!! TCATATGCAAACGGATTAAA+AGG + tig0024075:41072-41091 None:intergenic 30.0%
CTTGAAAGTTCATATGCAAA+CGG + tig0024075:41081-41100 None:intergenic 30.0%
ACGTCAAGAGAACTAAATAA+AGG + tig0024075:41635-41654 None:intergenic 30.0%
!! TTTATTTAGTTCTCTTGACG+TGG - tig0024075:41634-41653 Msa1413900:intron 30.0%
!! TTATTTAGTTCTCTTGACGT+GGG - tig0024075:41635-41654 Msa1413900:intron 30.0%
ACACTTGCACAAATATGTAT+CGG + tig0024075:41776-41795 None:intergenic 30.0%
ATACATATTTGTGCAAGTGT+TGG - tig0024075:41776-41795 Msa1413900:intron 30.0%
! TTATAATAGCTGCTTTGTCA+AGG + tig0024075:42344-42363 None:intergenic 30.0%
TAGTAAGAGTTCTACCAATT+TGG - tig0024075:42451-42470 Msa1413900:intron 30.0%
AGTAAGAGTTCTACCAATTT+GGG - tig0024075:42452-42471 Msa1413900:intron 30.0%
AATCACACTTCTACAAAGAA+TGG - tig0024075:42689-42708 Msa1413900:intron 30.0%
ATCACACTTCTACAAAGAAT+GGG - tig0024075:42690-42709 Msa1413900:intron 30.0%
ATACTATGCATGTTAGTATC+CGG - tig0024075:42732-42751 Msa1413900:intron 30.0%
! GTTACTTTGTATTGTGTTCT+AGG - tig0024075:43132-43151 Msa1413900:CDS 30.0%
! AACACCACTAATCTTTGTTT+CGG + tig0024075:43233-43252 None:intergenic 30.0%
!! GAACTTTGAAATAAAGCTTC+TGG - tig0024075:43286-43305 Msa1413900:CDS 30.0%
! AAGACTTCTTCCTAAGGTTT+TGG + tig0024075:39341-39360 None:intergenic 35.0%
GAACAAAAGAGACACATCTA+TGG - tig0024075:39403-39422 Msa1413900:three_prime_UTR 35.0%
GAAAAGTGACAAAGAAAGTG+TGG - tig0024075:39427-39446 Msa1413900:three_prime_UTR 35.0%
TAACAACTATAGAGGATGGA+AGG - tig0024075:39469-39488 Msa1413900:three_prime_UTR 35.0%
TAAGAGTAACATGCATGGAA+TGG + tig0024075:39541-39560 None:intergenic 35.0%
! CTTTCATTTCCACATTTTGG+TGG + tig0024075:40356-40375 None:intergenic 35.0%
AATGACATTTGTCCTGTACT+TGG + tig0024075:40395-40414 None:intergenic 35.0%
AGACCTTGTAACTTAGCATT+TGG - tig0024075:40461-40480 Msa1413900:intron 35.0%
TTCAATCCAAACACAGATTC+AGG - tig0024075:40494-40513 Msa1413900:intron 35.0%
TTCTTTCCTGAATCTGTGTT+TGG + tig0024075:40503-40522 None:intergenic 35.0%
AACACAGATTCAGGAAAGAA+AGG - tig0024075:40503-40522 Msa1413900:intron 35.0%
!! TACCTTCACTTTTGCACAAA+TGG - tig0024075:40556-40575 Msa1413900:intron 35.0%
AACCATTTGTGCAAAAGTGA+AGG + tig0024075:40561-40580 None:intergenic 35.0%
TATGTGAAGGTAAAAGCAAC+AGG - tig0024075:40695-40714 Msa1413900:intron 35.0%
GAAACTCAATCTACAAGAAG+AGG - tig0024075:40769-40788 Msa1413900:intron 35.0%
GTATCTTGTCTTTATCCTGT+TGG + tig0024075:41016-41035 None:intergenic 35.0%
! AAGGGCGACAAAAGTAATTT+TGG - tig0024075:41285-41304 Msa1413900:intron 35.0%
AAGCGACTTATAAGAAAGGA+GGG + tig0024075:41345-41364 None:intergenic 35.0%
AAAGCGACTTATAAGAAAGG+AGG + tig0024075:41346-41365 None:intergenic 35.0%
TCCTTTCTTATAAGTCGCTT+TGG - tig0024075:41345-41364 Msa1413900:intron 35.0%
! CCTTTCTTATAAGTCGCTTT+GGG - tig0024075:41346-41365 Msa1413900:intron 35.0%
! TTGCACAAATATGTATCGGT+TGG + tig0024075:41772-41791 None:intergenic 35.0%
!! ATATTTGTGCAAGTGTTGGT+TGG - tig0024075:41780-41799 Msa1413900:intron 35.0%
!! ACTATACAAGCCGATTTTGT+TGG + tig0024075:42185-42204 None:intergenic 35.0%
!!! AGGGTTTATTTTGTCTTGTG+GGG + tig0024075:42367-42386 None:intergenic 35.0%
!!! CAGGGTTTATTTTGTCTTGT+GGG + tig0024075:42368-42387 None:intergenic 35.0%
!!! TCAGGGTTTATTTTGTCTTG+TGG + tig0024075:42369-42388 None:intergenic 35.0%
CAAGACAAAATAAACCCTGA+CGG - tig0024075:42369-42388 Msa1413900:CDS 35.0%
TGTATACTGCATAGATACCA+TGG + tig0024075:42408-42427 None:intergenic 35.0%
TCTATGCAGTATACAACAAG+TGG - tig0024075:42413-42432 Msa1413900:CDS 35.0%
! AGATTGGTAACCATATCGTT+AGG + tig0024075:42617-42636 None:intergenic 35.0%
! ACGATTTTTCTGTCGTAGAT+TGG + tig0024075:42633-42652 None:intergenic 35.0%
CCAACAATGAGAAAAATCAC+CGG - tig0024075:42654-42673 Msa1413900:intron 35.0%
AGAAAAATCACCGGAAAAGA+AGG - tig0024075:42663-42682 Msa1413900:intron 35.0%
CTTCTACAAAGAATGGGAAT+TGG - tig0024075:42696-42715 Msa1413900:intron 35.0%
TTTCTCGGTTCAAATCCTAT+AGG + tig0024075:42798-42817 None:intergenic 35.0%
ATAGGATTTGAACCGAGAAA+AGG - tig0024075:42798-42817 Msa1413900:intron 35.0%
TCTGATGCATTTACTTTGGT+TGG - tig0024075:42879-42898 Msa1413900:intron 35.0%
AGAATATGAGAAGTCTTGCA+GGG - tig0024075:42934-42953 Msa1413900:intron 35.0%
TTAAATCTGCAACAGGGAAT+TGG - tig0024075:43033-43052 Msa1413900:CDS 35.0%
! ACTTTGTATTGTGTTCTAGG+TGG - tig0024075:43135-43154 Msa1413900:CDS 35.0%
! TATTGTGTTCTAGGTGGTAT+AGG - tig0024075:43141-43160 Msa1413900:intron 35.0%
TAGGTACAAAGGAATGATGA+TGG - tig0024075:43160-43179 Msa1413900:intron 35.0%
!! AATGATGATGGTACTGATCA+AGG - tig0024075:43172-43191 Msa1413900:intron 35.0%
CAATCCGAAACAAAGATTAG+TGG - tig0024075:43226-43245 Msa1413900:intron 35.0%
AAGGTCATGCCCTTTATCAT+TGG - tig0024075:39488-39507 Msa1413900:three_prime_UTR 40.0%
!! ATAGACCAAGAGGTTTGCTA+AGG + tig0024075:39653-39672 None:intergenic 40.0%
CTGTTGTAAGATAGACCAAG+AGG + tig0024075:39663-39682 None:intergenic 40.0%
TTGTGGCTGTAATACTGCTA+AGG + tig0024075:39693-39712 None:intergenic 40.0%
ACATAGAAAAGCTCCTAGCA+AGG + tig0024075:39755-39774 None:intergenic 40.0%
TTTGGACGCTACAAAACTCT+TGG - tig0024075:39784-39803 Msa1413900:CDS 40.0%
CTAATTCGTCAACGTCAACA+AGG - tig0024075:40170-40189 Msa1413900:CDS 40.0%
ACATGCATAGAACCAAGTAC+AGG - tig0024075:40380-40399 Msa1413900:CDS 40.0%
GGATTTGGGCTTATGATAGT+AGG - tig0024075:40425-40444 Msa1413900:intron 40.0%
TTATGATAGTAGGAGCTGCA+GGG - tig0024075:40435-40454 Msa1413900:intron 40.0%
GCTCCAAATGCTAAGTTACA+AGG + tig0024075:40467-40486 None:intergenic 40.0%
!! AGCTTGGTGTTGATAGAGTA+AGG + tig0024075:40833-40852 None:intergenic 40.0%
TTTCTCATACACCTCAGTTC+AGG - tig0024075:40852-40871 Msa1413900:intron 40.0%
! ACTGGACATTGATTAGTGGT+TGG + tig0024075:40881-40900 None:intergenic 40.0%
CCCAAAGCGACTTATAAGAA+AGG + tig0024075:41349-41368 None:intergenic 40.0%
!! CACAAATATGTATCGGTTGG+AGG + tig0024075:41769-41788 None:intergenic 40.0%
CCAATCACTATCGAACCAAT+TGG + tig0024075:42102-42121 None:intergenic 40.0%
!! CCAATTGGTTCGATAGTGAT+TGG - tig0024075:42099-42118 Msa1413900:CDS 40.0%
!! CAAAATCGGCTTGTATAGTG+AGG - tig0024075:42186-42205 Msa1413900:CDS 40.0%
! GTTCTACCAATTTGGGTTTC+AGG - tig0024075:42459-42478 Msa1413900:intron 40.0%
AGTATGCCTGAAACCCAAAT+TGG + tig0024075:42468-42487 None:intergenic 40.0%
AGACTAACACTGTGTTCTGT+TGG + tig0024075:42509-42528 None:intergenic 40.0%
AGTCTTCCAAGCACTTCAAT+CGG - tig0024075:42524-42543 Msa1413900:intron 40.0%
CGATGTTAAGCCTAACGATA+TGG - tig0024075:42604-42623 Msa1413900:intron 40.0%
! CCGGTGATTTTTCTCATTGT+TGG + tig0024075:42657-42676 None:intergenic 40.0%
AAAATCACCGGAAAAGAAGG+CGG - tig0024075:42666-42685 Msa1413900:intron 40.0%
! TCTTTTCCATTCTACCACAC+CGG + tig0024075:42754-42773 None:intergenic 40.0%
GTGTGGTAGAATGGAAAAGA+AGG - tig0024075:42754-42773 Msa1413900:intron 40.0%
AGAATGGAAAAGAAGGACCA+TGG - tig0024075:42761-42780 Msa1413900:intron 40.0%
GCAAGACTTCTCATATTCTC+AGG + tig0024075:42933-42952 None:intergenic 40.0%
GAGAATATGAGAAGTCTTGC+AGG - tig0024075:42933-42952 Msa1413900:intron 40.0%
TTGACGGTTAAATCTGCAAC+AGG - tig0024075:43026-43045 Msa1413900:CDS 40.0%
TGACGGTTAAATCTGCAACA+GGG - tig0024075:43027-43046 Msa1413900:CDS 40.0%
TTACCACAGGATTTGAACGA+AGG - tig0024075:43056-43075 Msa1413900:CDS 40.0%
TACCACAGGATTTGAACGAA+GGG - tig0024075:43057-43076 Msa1413900:CDS 40.0%
TCTAGGTGGTATAGGTACAA+AGG - tig0024075:43149-43168 Msa1413900:intron 40.0%
TTTGAGAAGCTAGGAGCCAT+TGG - tig0024075:39625-39644 Msa1413900:CDS 45.0%
!! GAGGTTTGCTAAGGTACCAA+TGG + tig0024075:39644-39663 None:intergenic 45.0%
TGGTACCTTAGCAAACCTCT+TGG - tig0024075:39645-39664 Msa1413900:CDS 45.0%
CTGCACATTTGCTTCCTTTC+TGG - tig0024075:39810-39829 Msa1413900:CDS 45.0%
!! CGTCAACAAGGTGTTACTTC+AGG - tig0024075:40182-40201 Msa1413900:CDS 45.0%
AGCATGCATCCACCAAAATG+TGG - tig0024075:40344-40363 Msa1413900:CDS 45.0%
CTTATGATAGTAGGAGCTGC+AGG - tig0024075:40434-40453 Msa1413900:intron 45.0%
! GTAAATGTGAGTTGGGCTCT+TGG - tig0024075:40608-40627 Msa1413900:intron 45.0%
GAAAACAGCATCAAACCAGC+AGG + tig0024075:40644-40663 None:intergenic 45.0%
CTGAGGTGTATGAGAAAGCT+TGG + tig0024075:40849-40868 None:intergenic 45.0%
ACGACTAAAGCGTGACCAAT+TGG - tig0024075:42084-42103 Msa1413900:CDS 45.0%
AGATCGTGTAAGAAGCTGCA+GGG + tig0024075:42581-42600 None:intergenic 45.0%
AAGATCGTGTAAGAAGCTGC+AGG + tig0024075:42582-42601 None:intergenic 45.0%
! TGTGATTCCGCCTTCTTTTC+CGG + tig0024075:42676-42695 None:intergenic 45.0%
ATGCATGTTAGTATCCGGTG+TGG - tig0024075:42737-42756 Msa1413900:intron 45.0%
TAGTATCCGGTGTGGTAGAA+TGG - tig0024075:42745-42764 Msa1413900:intron 45.0%
! GAAGATATCGCGCCTTTTCT+CGG + tig0024075:42813-42832 None:intergenic 45.0%
TATCTTCCATGTCGGGAATG+TGG - tig0024075:42826-42845 Msa1413900:intron 45.0%
AATCAACCACATTCCCGACA+TGG + tig0024075:42835-42854 None:intergenic 45.0%
ATTCCTCAGTTAGCACTAGC+AGG - tig0024075:42852-42871 Msa1413900:intron 45.0%
AATCCTGCTAGTGCTAACTG+AGG + tig0024075:42858-42877 None:intergenic 45.0%
! GTCAGTGTTTTTCTGTGGCT+TGG - tig0024075:42956-42975 Msa1413900:CDS 45.0%
AACAGGGAATTGGTTACCAC+AGG - tig0024075:43043-43062 Msa1413900:CDS 45.0%
GGATTTGAACGAAGGGAGAT+TGG - tig0024075:43064-43083 Msa1413900:CDS 45.0%
!! GATGGTACTGATCAAGGTAG+TGG - tig0024075:43178-43197 Msa1413900:intron 45.0%
!!! AATAATTTTTACTATTTAAT+TGG - tig0024075:40922-40941 Msa1413900:intron 5.0%
! GCTAGTCTAGCTACCTTGCT+AGG - tig0024075:39739-39758 Msa1413900:CDS 50.0%
GTACTACAATCGCGCTGTCA+AGG - tig0024075:39936-39955 Msa1413900:CDS 50.0%
!! CTTGGTCTTGGAATTCCTGC+TGG - tig0024075:40626-40645 Msa1413900:intron 50.0%
! GTGGTTGGTTACCTGAACTG+AGG + tig0024075:40866-40885 None:intergenic 50.0%
TAGAAACTGCGAGCACCAAC+AGG - tig0024075:40998-41017 Msa1413900:intron 50.0%
GATCAGATGCAGAACCGTCA+GGG + tig0024075:42386-42405 None:intergenic 50.0%
ACGGTTCTGCATCTGATCCA+TGG - tig0024075:42388-42407 Msa1413900:CDS 50.0%
! TTCGGTCCGATTGAAGTGCT+TGG + tig0024075:42533-42552 None:intergenic 50.0%
AGGCGCGATATCTTCCATGT+CGG - tig0024075:42818-42837 Msa1413900:intron 50.0%
! GCAGGGTCAGTGTTTTTCTG+TGG - tig0024075:42951-42970 Msa1413900:CDS 50.0%
CTCCCTTCGTTCAAATCCTG+TGG + tig0024075:43062-43081 None:intergenic 50.0%
TGATATGGTCGTGAGTCGCG+AGG + tig0024075:39978-39997 None:intergenic 55.0%
! GTGAGTTGGGCTCTTGGTCT+TGG - tig0024075:40614-40633 Msa1413900:intron 55.0%
GGATCAGATGCAGAACCGTC+AGG + tig0024075:42387-42406 None:intergenic 55.0%
GGCGCGATATCTTCCATGTC+GGG - tig0024075:42819-42838 Msa1413900:intron 55.0%
Chromosome Type Strat End Strand Name
tig0024075 gene 39282 43490 39282 ID=Msa1413900;Name=Msa1413900
tig0024075 mRNA 39282 43490 39282 ID=Msa1413900-mRNA-1;Parent=Msa1413900;Name=Msa1413900-mRNA-1;_AED=0.36;_eAED=0.36;_QI=119|1|1|1|1|1|4|228|605
tig0024075 exon 39282 40434 39282 ID=Msa1413900-mRNA-1:exon:21477;Parent=Msa1413900-mRNA-1
tig0024075 exon 41899 42464 41899 ID=Msa1413900-mRNA-1:exon:21476;Parent=Msa1413900-mRNA-1
tig0024075 exon 42941 43158 42941 ID=Msa1413900-mRNA-1:exon:21475;Parent=Msa1413900-mRNA-1
tig0024075 exon 43263 43490 43263 ID=Msa1413900-mRNA-1:exon:21474;Parent=Msa1413900-mRNA-1
tig0024075 five_prime_UTR 43372 43490 43372 ID=Msa1413900-mRNA-1:five_prime_utr;Parent=Msa1413900-mRNA-1
tig0024075 CDS 43263 43371 43263 ID=Msa1413900-mRNA-1:cds;Parent=Msa1413900-mRNA-1
tig0024075 CDS 42941 43158 42941 ID=Msa1413900-mRNA-1:cds;Parent=Msa1413900-mRNA-1
tig0024075 CDS 41899 42464 41899 ID=Msa1413900-mRNA-1:cds;Parent=Msa1413900-mRNA-1
tig0024075 CDS 39510 40434 39510 ID=Msa1413900-mRNA-1:cds;Parent=Msa1413900-mRNA-1
tig0024075 three_prime_UTR 39282 39509 39282 ID=Msa1413900-mRNA-1:three_prime_utr;Parent=Msa1413900-mRNA-1
Gene Sequence

>Msa1413900

ATGAACAAAAGAGACACATCTATGGAGAAAAGTGACAAAGAAAGTGTGGAAAACAAGCAAGTTTCAAATAACAACTATAGAGGATGGAAGGTCATGCCCTTTATCATTGGAAATGAAACATTTGAGAAGCTAGGAGCCATTGGTACCTTAGCAAACCTCTTGGTCTATCTTACAACAGTCTTCAACCTTAGCAGTATTACAGCCACAAATATTGTCAATATCTTCAATGGAAGTGCTAGTCTAGCTACCTTGCTAGGAGCTTTTCTATGTGATACTTATTTTGGACGCTACAAAACTCTTGGATTCTGCACATTTGCTTCCTTTCTGGGGTTGCTTGTTATACAACTAACAGCATGGATTAAAAGCATGCATCCACCAAAATGTGGAAATGAAAGAAGCACATGCATAGAACCAAGTACAGGACAAATGTCATTTCTACTACTTGGATTTGGGCTTATGATAGTAGGAGCTGCAGGGATTAGACCTTGTAACTTAGCATTTGGAGCTGATCAATTCAATCCAAACACAGATTCAGGAAAGAAAGGAATCAATAGTTTCTTCAATTGGTATTTTTTTACCTTCACTTTTGCACAAATGGTTTCTTTGTCACTAATTGTTTATATACAAGTAAATGTGAGTTGGGCTCTTGGTCTTGGAATTCCTGCTGGTTTGATGCTGTTTTCATGTGTTGTTTATTTCACTGGAAGTAAATATTATGTGAAGGTAAAAGCAACAGGTAGTCCTGTAACAAATATTGTTCAAGTGATATATGTGGCTATAAAGAAAAGGAAACTCAATCTACAAGAAGAGGATGAGTATTCATTGCTTTCTCTTTTTAGCTATATATCTCCTTACTCTATCAACACCAAGCTTTCTCATACACCTCAGTTCAGGTTCCTTGACAAAGCAGCTATTATAACCCCACAAGACAAAATAAACCCTGACGGTTCTGCATCTGATCCATGGTATCTATGCAGTATACAACAAGTGGAAGAAGTGAAATGCTTAGTAAGAGTTCTACCAATTTGGGTTTCAGGCATACTCTATTATGTTGCATTAGTCCAACAGAACACAGTGTTAGTCTTCCAAGCACTTCAATCGGACCGAACCTTTTTCAACACAAATTTCAAAATCCCTGCAGCTTCTTACACGATCTTCACGATGTTAAGCCTAACGATATGGTTACCAATCTACGACAGAAAAATCGTACCAACAATGAGAAAAATCACCGGAAAAGAAGGCGGAATCACACTTCTACAAAGAATGGGAATTGGAATGTTTATTGCTATACTATGCATGTTAGTATCCGGTGTGGTAGAATGGAAAAGAAGGACCATGGCTATTAATAATCCTATAGGATTTGAACCGAGAAAAGGCGCGATATCTTCCATGTCGGGAATGTGGTTGATTCCTCAGTTAGCACTAGCAGGATTTTCTGATGCATTTACTTTGGTTGGTCAAGTTGAATTTTACTACAAACAGTTTCCTGAGAATATGAGAAGTCTTGCAGGGTCAGTGTTTTTCTGTGGCTTGGCACTATCAAGTTATTTTAGTAGTTTGTTGATTACAATTATTCATAGGTTGACGGTTAAATCTGCAACAGGGAATTGGTTACCACAGGATTTGAACGAAGGGAGATTGGATTACTTTTATTACATGATTACTTGTTTGGAAGTTGTTAATTTGGGTTACTTTGTATTGTGTTCTAGGTGGTATAGGTACAAAGGAATGATGATGGTACTGATCAAGGTAGTGGTGTTGAACTTGATCAAGTGTCTAAACAATCCGAAACAAAGATTAGTGGTGTTTAGTGATTAA

Protein sequence

>Msa1413900

MNKRDTSMEKSDKESVENKQVSNNNYRGWKVMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLSSITATNIVNIFNGSASLATLLGAFLCDTYFGRYKTLGFCTFASFLGLLVIQLTAWIKSMHPPKCGNERSTCIEPSTGQMSFLLLGFGLMIVGAAGIRPCNLAFGADQFNPNTDSGKKGINSFFNWYFFTFTFAQMVSLSLIVYIQVNVSWALGLGIPAGLMLFSCVVYFTGSKYYVKVKATGSPVTNIVQVIYVAIKKRKLNLQEEDEYSLLSLFSYISPYSINTKLSHTPQFRFLDKAAIITPQDKINPDGSASDPWYLCSIQQVEEVKCLVRVLPIWVSGILYYVALVQQNTVLVFQALQSDRTFFNTNFKIPAASYTIFTMLSLTIWLPIYDRKIVPTMRKITGKEGGITLLQRMGIGMFIAILCMLVSGVVEWKRRTMAINNPIGFEPRKGAISSMSGMWLIPQLALAGFSDAFTLVGQVEFYYKQFPENMRSLAGSVFFCGLALSSYFSSLLITIIHRLTVKSATGNWLPQDLNEGRLDYFYYMITCLEVVNLGYFVLCSRWYRYKGMMMVLIKVVVLNLIKCLNNPKQRLVVFSD*