AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1141250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141250 MtrunA17_Chr7g0223901 100.000 377 0 0 1 377 1 377 0.0 784
Msa1141250 MtrunA17_Chr6g0448881 97.082 377 11 0 1 377 1 377 0.0 769
Msa1141250 MtrunA17_Chr2g0328091 97.082 377 11 0 1 377 1 377 0.0 768
Msa1141250 MtrunA17_Chr1g0175391 97.613 377 9 0 1 377 1 377 0.0 768
Msa1141250 MtrunA17_Chr3g0129641 96.021 377 15 0 1 377 1 377 0.0 762
Msa1141250 MtrunA17_Chr7g0258721 96.021 377 15 0 1 377 1 377 0.0 761
Msa1141250 MtrunA17_Chr2g0278591 93.899 377 23 0 1 377 1 377 0.0 751
Msa1141250 MtrunA17_Chr7g0224401 43.272 379 201 3 10 374 7 385 2.36e-120 353
Msa1141250 MtrunA17_Chr5g0427591 37.220 446 207 11 1 376 1 443 2.52e-91 281
Msa1141250 MtrunA17_Chr8g0361001 37.220 446 207 11 1 376 1 443 3.10e-91 281
Msa1141250 MtrunA17_Chr8g0381261 34.550 411 219 8 10 372 10 418 1.46e-72 232
Msa1141250 MtrunA17_Chr3g0089031 38.158 380 209 9 7 377 1 363 2.44e-70 224
Msa1141250 MtrunA17_Chr2g0305361 28.802 434 243 8 8 377 6 437 5.32e-59 197
Msa1141250 MtrunA17_Chr3g0080021 31.313 297 180 9 91 371 179 467 3.77e-42 153
Msa1141250 MtrunA17_Chr8g0369101 31.741 293 173 10 91 366 187 469 1.09e-37 141
Msa1141250 MtrunA17_Chr3g0111971 29.365 252 159 7 9 245 21 268 3.21e-23 101
Msa1141250 MtrunA17_Chr3g0111971 33.607 122 78 2 250 368 586 707 1.97e-15 77.8
Msa1141250 MtrunA17_Chr8g0336071 40.000 95 57 0 105 199 1 95 5.17e-19 81.3
Msa1141250 MtrunA17_Chr8g0336061 40.217 92 42 1 241 319 12 103 3.16e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141250 AT3G12110.1 97.613 377 9 0 1 377 1 377 0.0 770
Msa1141250 AT3G53750.1 96.286 377 14 0 1 377 1 377 0.0 762
Msa1141250 AT3G53750.2 96.286 377 14 0 1 377 1 377 0.0 762
Msa1141250 AT2G37620.1 96.286 377 14 0 1 377 1 377 0.0 762
Msa1141250 AT2G37620.3 96.286 377 14 0 1 377 1 377 0.0 762
Msa1141250 AT2G37620.2 96.286 377 14 0 1 377 1 377 0.0 762
Msa1141250 AT2G37620.4 96.286 377 14 0 1 377 1 377 0.0 762
Msa1141250 AT3G46520.2 96.286 377 14 0 1 377 1 377 0.0 758
Msa1141250 AT3G46520.1 96.286 377 14 0 1 377 1 377 0.0 758
Msa1141250 AT5G09810.1 95.225 377 18 0 1 377 1 377 0.0 756
Msa1141250 AT5G59370.2 96.021 377 15 0 1 377 1 377 0.0 756
Msa1141250 AT5G59370.1 96.021 377 15 0 1 377 1 377 0.0 756
Msa1141250 AT1G49240.1 92.042 377 30 0 1 377 1 377 0.0 744
Msa1141250 AT3G18780.2 91.777 377 31 0 1 377 1 377 0.0 742
Msa1141250 AT3G18780.3 91.777 377 31 0 1 377 1 377 0.0 742
Msa1141250 AT3G18780.1 91.643 359 30 0 1 359 1 359 0.0 702
Msa1141250 AT2G42100.1 84.783 368 56 0 10 377 11 378 0.0 677
Msa1141250 AT2G42090.1 70.541 370 104 1 7 376 1 365 0.0 568
Msa1141250 AT2G42170.1 78.012 332 70 1 46 377 1 329 0.0 559
Msa1141250 AT2G42170.3 78.012 332 70 1 46 377 1 329 0.0 559
Msa1141250 AT2G42170.4 77.885 312 66 1 46 357 1 309 0.0 522
Msa1141250 AT2G42170.2 77.885 312 66 1 46 357 1 309 0.0 522
Msa1141250 AT2G42170.5 78.319 226 46 1 152 377 9 231 4.83e-132 377
Msa1141250 AT3G27000.1 43.536 379 200 3 10 374 7 385 1.05e-121 357
Msa1141250 AT1G18450.1 37.020 443 209 9 1 376 1 440 1.07e-93 287
Msa1141250 AT1G13180.1 34.223 412 219 9 10 372 9 417 1.14e-72 233
Msa1141250 AT3G60830.1 37.731 379 212 9 7 377 1 363 1.09e-67 218
Msa1141250 AT3G33520.1 30.879 421 233 7 10 377 5 420 4.95e-61 202
Msa1141250 AT5G56180.3 32.394 284 167 9 91 358 50 324 6.11e-37 137
Msa1141250 AT5G56180.1 32.394 284 167 9 91 358 182 456 3.44e-36 137
Msa1141250 AT3G12380.2 31.008 258 153 9 9 245 21 274 3.70e-26 110
Msa1141250 AT3G12380.2 33.103 145 93 2 228 368 572 716 4.74e-16 80.5
Msa1141250 AT3G12380.1 30.859 256 150 9 9 245 21 268 1.91e-25 108
Msa1141250 AT3G12380.1 33.103 145 93 2 228 368 566 710 4.99e-16 80.1
Msa1141250 AT1G73910.1 35.862 145 74 3 1 129 1 142 2.26e-23 95.1
Msa1141250 AT1G73910.2 35.862 145 74 3 1 129 1 142 2.26e-23 95.1
Msa1141250 AT5G56180.2 33.663 202 111 8 91 281 182 371 6.24e-21 93.6
Msa1141250 AT1G73910.3 29.268 123 71 2 1 107 1 123 2.56e-12 65.1

Find 140 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGGTAACATTGTGCTTTC+AGG 0.144297 7_4:-14353573 Msa1141250:CDS
AAAAGCACTGGGTGTTCTTC+TGG 0.181767 7_4:+14354757 None:intergenic
GCAAATAATAATGAATTTAA+AGG 0.187995 7_4:+14352757 None:intergenic
CATTCTGCGTATGAATTAAC+TGG 0.215336 7_4:-14352615 Msa1141250:three_prime_UTR
GAGGAAATGAAAATGGAAAA+TGG 0.233782 7_4:+14357060 None:intergenic
TGCCATGTATGTTGCTATTC+AGG 0.267079 7_4:-14354659 Msa1141250:CDS
GCAGGTATTGTGTTGGATTC+TGG 0.277388 7_4:-14354008 Msa1141250:intron
CACTTTCTGTGGACAATTGA+TGG 0.320963 7_4:+14352877 None:intergenic
GCTACAAGTTGCAATGCTTC+TGG 0.324092 7_4:+14352783 None:intergenic
ACCTTGATCTTCATGCTACT+TGG 0.331858 7_4:+14353489 None:intergenic
CTCATTCTGTCAGCAATGCC+TGG 0.344924 7_4:+14353534 None:intergenic
ATCTTCTCACGATTGGCCTT+AGG 0.347633 7_4:+14354715 None:intergenic
GCTGTGTTTCCCAGCATTGT+AGG 0.369101 7_4:-14354964 Msa1141250:CDS
GAGCAAGGAAATTTCTGCTT+TGG 0.374975 7_4:-14353514 Msa1141250:CDS
AACATGGAATCGTTAGCAAC+TGG 0.386131 7_4:-14354834 Msa1141250:CDS
AGGGCATAACCCTCGTAGAT+AGG 0.389103 7_4:+14353963 None:intergenic
CCTTGATCTTCATGCTACTT+GGG 0.389144 7_4:+14353490 None:intergenic
TGCTGCTTCCATTCCTATCA+TGG 0.390401 7_4:+14353659 None:intergenic
AAAGCACTGGGTGTTCTTCT+GGG 0.391378 7_4:+14354758 None:intergenic
AGGAAATGAAAATGGAAAAT+GGG 0.391585 7_4:+14357061 None:intergenic
CTTGTTTGTGACAATGGAAC+TGG 0.397675 7_4:-14355560 Msa1141250:CDS
CAAATAATAATGAATTTAAA+GGG 0.399404 7_4:+14352758 None:intergenic
CTGAGAGAAAATACAGTGTC+TGG 0.408420 7_4:-14353455 Msa1141250:CDS
CTGTTCCAACCATCCATGAT+AGG 0.411484 7_4:-14353672 Msa1141250:CDS
TCTTCTCACGATTGGCCTTA+GGG 0.411910 7_4:+14354716 None:intergenic
CAAAATCTTCATCAAGAAAT+CGG 0.413590 7_4:+14353896 None:intergenic
TGCCATCCTTCGTCTTGATC+TGG 0.418422 7_4:-14353934 Msa1141250:CDS
CTGGATTGGAGGTTCCATCT+TGG 0.418962 7_4:-14353436 Msa1141250:CDS
TGAAGTGCGATGTTGATATC+AGG 0.420318 7_4:-14353605 Msa1141250:CDS
GGGACGACATGGAAAAGATT+TGG 0.423131 7_4:-14354813 Msa1141250:CDS
CTAACGATTCCATGTTCAAT+GGG 0.426897 7_4:+14354841 None:intergenic
CATGTTATTATTCTAAATGT+TGG 0.432525 7_4:-14352717 Msa1141250:three_prime_UTR
TTGAGTCATCTTCTCACGAT+TGG 0.438247 7_4:+14354708 None:intergenic
ATCTCTTAGCACCTTCCAGC+AGG 0.441982 7_4:-14353412 Msa1141250:intron
CACTGGTGTGATGGTTGGCA+TGG 0.445024 7_4:-14354929 Msa1141250:CDS
CAACCTCTTGTTTGTGACAA+TGG 0.449997 7_4:-14355566 Msa1141250:CDS
CAATGGAACTGGAATGGTTA+AGG 0.450612 7_4:-14355549 Msa1141250:intron
CCTCGTAGATAGGGACAGTA+TGG 0.450826 7_4:+14353973 None:intergenic
AGAGAAAAGAGGGTTATTGA+AGG 0.453024 7_4:-14352829 Msa1141250:three_prime_UTR
TAAATGTTGGAGTGATTATG+AGG 0.454835 7_4:-14352704 Msa1141250:three_prime_UTR
TCTCTATGCAGGTATTGTGT+TGG 0.455001 7_4:-14354015 Msa1141250:intron
CTACGAATTGCCTGATGGAC+AGG 0.461381 7_4:-14353736 Msa1141250:CDS
AGCAAGAGCTGGAGACAGCC+AGG 0.471536 7_4:-14353782 Msa1141250:CDS
GCTAACGATTCCATGTTCAA+TGG 0.473865 7_4:+14354840 None:intergenic
ATGGTGATCACCTGTCCATC+AGG 0.477697 7_4:+14353726 None:intergenic
GGAGCCTCAGTTAAAAGCAC+TGG 0.477920 7_4:+14354745 None:intergenic
AACACGAAGCTCATTGTAGA+AGG 0.478617 7_4:+14354783 None:intergenic
AGAAAATACAGTGTCTGGAT+TGG 0.479498 7_4:-14353450 Msa1141250:CDS
AAGGCAGAATATGATGAATC+TGG 0.482638 7_4:-14352901 Msa1141250:CDS
CTATCATGGATGGTTGGAAC+AGG 0.485023 7_4:+14353673 None:intergenic
CTCAAATACCCCATTGAACA+TGG 0.487849 7_4:-14354850 Msa1141250:CDS
AAATACAGTGTCTGGATTGG+AGG 0.490757 7_4:-14353447 Msa1141250:CDS
ATCCTTCGTCTTGATCTGGC+TGG 0.494460 7_4:-14353930 Msa1141250:CDS
AAGGAAAATGCCGAGGGTGA+TGG 0.500817 7_4:+14356924 None:intergenic
GCTCTTCTCGACGGATGAGC+TGG 0.511637 7_4:+14353758 None:intergenic
TGAATAGCAACATACATGGC+AGG 0.512298 7_4:+14354661 None:intergenic
ACGAGGACGACCTACAATGC+TGG 0.512907 7_4:+14354954 None:intergenic
GAAGTGAGAGAGAGAGTGTG+TGG 0.513512 7_4:+14356979 None:intergenic
GCTTCCATTCCTATCATGGA+TGG 0.517343 7_4:+14353663 None:intergenic
TGTGTGGGAGAGAGAGAAAG+CGG 0.522194 7_4:+14356995 None:intergenic
AGACGAGCGTTTCAGATGTC+CGG 0.524785 7_4:-14353700 Msa1141250:CDS
CTTGATCTTCATGCTACTTG+GGG 0.525749 7_4:+14353491 None:intergenic
GACGAAGGATGGCATGTGGA+AGG 0.532459 7_4:+14353943 None:intergenic
TCTGAAACGCTCGTCTCCGA+TGG 0.533062 7_4:+14353707 None:intergenic
TCCTCGTCACACTGGTGTGA+TGG 0.533985 7_4:-14354938 Msa1141250:CDS
ATTGTGTTGGATTCTGGTGA+TGG 0.535950 7_4:-14354002 Msa1141250:CDS
GTCAGCAATGCCTGGGAACA+TGG 0.536051 7_4:+14353542 None:intergenic
CGTTAGCAACTGGGACGACA+TGG 0.537257 7_4:-14354824 Msa1141250:CDS
GGGCATAACCCTCGTAGATA+GGG 0.538631 7_4:+14353964 None:intergenic
TCTTTGCCTTCCATCACCCT+CGG 0.540093 7_4:-14356934 Msa1141250:five_prime_UTR
CCAGCTCTTGCTCATAGTCA+AGG 0.540763 7_4:+14353793 None:intergenic
CTTACCGGTGGTACGACCAC+TGG 0.540927 7_4:+14354618 None:intergenic
GAGAAAAGAGGGTTATTGAA+GGG 0.541327 7_4:-14352828 Msa1141250:three_prime_UTR
AGGGTGATGGAAGGCAAAGA+AGG 0.543078 7_4:+14356937 None:intergenic
CCCAAGTAGCATGAAGATCA+AGG 0.546192 7_4:-14353490 Msa1141250:CDS
CCATTCCTATCATGGATGGT+TGG 0.548146 7_4:+14353667 None:intergenic
CGAGGACGACCTACAATGCT+GGG 0.552606 7_4:+14354955 None:intergenic
AACAATTTCTCGCTCTGCTG+AGG 0.553097 7_4:+14353848 None:intergenic
GTGATGAGGCACAGTCTAAG+AGG 0.553165 7_4:-14354885 Msa1141250:CDS
AGCCAGATCAAGACGAAGGA+TGG 0.553433 7_4:+14353932 None:intergenic
AAGTGAGAGAGAGAGTGTGT+GGG 0.555265 7_4:+14356980 None:intergenic
ATCAACATCGCACTTCATGA+TGG 0.558200 7_4:+14353611 None:intergenic
ATGATAGGAATGGAAGCAGC+AGG 0.559211 7_4:-14353657 Msa1141250:CDS
GATGGTTGGAACAGGACCTC+CGG 0.561826 7_4:+14353681 None:intergenic
GAATAGCAACATACATGGCA+GGG 0.569012 7_4:+14354662 None:intergenic
CCAACCATCCATGATAGGAA+TGG 0.569599 7_4:-14353667 Msa1141250:CDS
TCATTCTGTCAGCAATGCCT+GGG 0.569632 7_4:+14353535 None:intergenic
GGAGGAACAACCATGTTCCC+AGG 0.570238 7_4:-14353552 Msa1141250:CDS
ACATGGAATCGTTAGCAACT+GGG 0.574134 7_4:-14354833 Msa1141250:CDS
AAGCACTGGGTGTTCTTCTG+GGG 0.574143 7_4:+14354759 None:intergenic
AATTTCTCGCTCTGCTGAGG+TGG 0.575717 7_4:+14353851 None:intergenic
TGATGAGGCACAGTCTAAGA+GGG 0.579288 7_4:-14354884 Msa1141250:CDS
CAGCTTAGAAGCACTTTCTG+TGG 0.581853 7_4:+14352866 None:intergenic
ATTCTGCGTATGAATTAACT+GGG 0.585793 7_4:-14352614 Msa1141250:three_prime_UTR
CGATTGGCCTTAGGGTTGAG+AGG 0.589725 7_4:+14354724 None:intergenic
ACGAAGGATGGCATGTGGAA+GGG 0.591719 7_4:+14353944 None:intergenic
GGTGCTAAGAGATGCCAAGA+TGG 0.593241 7_4:+14353422 None:intergenic
AAGAGCTACGAATTGCCTGA+TGG 0.595436 7_4:-14353741 Msa1141250:CDS
TGAGGCTCCTCTCAACCCTA+AGG 0.595543 7_4:-14354731 Msa1141250:CDS
CGTCACACTGGTGTGATGGT+TGG 0.597543 7_4:-14354934 Msa1141250:CDS
ACTGGTGTGATGGTTGGCAT+GGG 0.600381 7_4:-14354928 Msa1141250:CDS
GATATCAGGAAAGACTTGTA+CGG 0.601211 7_4:-14353591 Msa1141250:CDS
GATGGACAGGTGATCACCAT+CGG 0.601892 7_4:-14353723 Msa1141250:CDS
TACGCCAGTGGTCGTACCAC+CGG 0.602745 7_4:-14354622 Msa1141250:intron
TTGTGACAATGGAACTGGAA+TGG 0.606936 7_4:-14355555 Msa1141250:CDS
CAGCTCTTGCTCATAGTCAA+GGG 0.607358 7_4:+14353794 None:intergenic
CCTTGACTATGAGCAAGAGC+TGG 0.608691 7_4:-14353793 Msa1141250:CDS
GTTCCATTGTCACAAACAAG+AGG 0.610975 7_4:+14355563 None:intergenic
AACAAAACAAACCTGCTGGA+AGG 0.616042 7_4:+14353401 None:intergenic
GAGCCTCAGTTAAAAGCACT+GGG 0.616759 7_4:+14354746 None:intergenic
CTTCATGATGGAGTTGTATG+TGG 0.618935 7_4:+14353623 None:intergenic
CATTGCTGACAGAATGAGCA+AGG 0.623432 7_4:-14353529 Msa1141250:CDS
ATGCTGGGAAACACAGCACG+AGG 0.626971 7_4:+14354970 None:intergenic
GTAGGTCGTCCTCGTCACAC+TGG 0.629317 7_4:-14354946 Msa1141250:CDS
GGCCTGAATAGCAACATACA+TGG 0.629684 7_4:+14354657 None:intergenic
GGTAACATTGTGCTTTCAGG+AGG 0.633227 7_4:-14353570 Msa1141250:CDS
GCTGGGAAACACAGCACGAG+GGG 0.634384 7_4:+14354972 None:intergenic
GTTCTTTCACTGTACGCCAG+TGG 0.634859 7_4:-14354634 Msa1141250:CDS
AGAAACATATACCTTTGGGA+AGG 0.635373 7_4:+14356905 None:intergenic
AAAATGCCGAGGGTGATGGA+AGG 0.638138 7_4:+14356928 None:intergenic
AGTGCAGATGTGGATTGCAA+AGG 0.639590 7_4:-14352920 Msa1141250:intron
TGCTGGGAAACACAGCACGA+GGG 0.642727 7_4:+14354971 None:intergenic
AATAGCAACATACATGGCAG+GGG 0.644788 7_4:+14354663 None:intergenic
CTTTGGGAAGGAAAATGCCG+AGG 0.647515 7_4:+14356917 None:intergenic
TTTGGGAAGGAAAATGCCGA+GGG 0.653422 7_4:+14356918 None:intergenic
ACTGGCGTACAGTGAAAGAA+CGG 0.656927 7_4:+14354636 None:intergenic
TCAAGACGAAGGATGGCATG+TGG 0.658783 7_4:+14353939 None:intergenic
ACCATCACACCAGTGTGACG+AGG 0.660573 7_4:+14354937 None:intergenic
AGATGCATATGTTGGTGATG+AGG 0.661651 7_4:-14354899 Msa1141250:CDS
CCATACTGTCCCTATCTACG+AGG 0.672368 7_4:-14353973 Msa1141250:CDS
CAATTCGTAGCTCTTCTCGA+CGG 0.674512 7_4:+14353749 None:intergenic
GTAGACGATGGCAGACGCTG+AGG 0.683003 7_4:-14355594 Msa1141250:exon
GACCAGCCAGATCAAGACGA+AGG 0.686380 7_4:+14353928 None:intergenic
CGAGCGTTTCAGATGTCCGG+AGG 0.696555 7_4:-14353697 Msa1141250:CDS
CTGCAGATAGTAGTAGACGA+TGG 0.705965 7_4:-14355606 Msa1141250:intron
GATGAGGCACAGTCTAAGAG+GGG 0.706688 7_4:-14354883 Msa1141250:CDS
CATACTGTCCCTATCTACGA+GGG 0.714771 7_4:-14353972 Msa1141250:CDS
TAACGATTCCATGTTCAATG+GGG 0.715992 7_4:+14354842 None:intergenic
GAAGGAGAGAAAATGCACAG+AGG 0.737959 7_4:+14356955 None:intergenic
AAGTAGCATGAAGATCAAGG+TGG 0.766332 7_4:-14353487 Msa1141250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATATATAATGTTATTATA+TGG - chr7_4:14356252-14356271 Msa1141250:intron 10.0%
!! CAAATAATAATGAATTTAAA+GGG + chr7_4:14356852-14356871 None:intergenic 10.0%
!!! AAAAAAGAAACAATTTTGAT+TGG - chr7_4:14353291-14353310 Msa1141250:intron 15.0%
!!! AAAATTGTTTTTAACATGTT+TGG - chr7_4:14353711-14353730 Msa1141250:CDS 15.0%
!! CTTTATAATCAATAAATTCT+CGG - chr7_4:14353863-14353882 Msa1141250:CDS 15.0%
!! AATATAAAGCAAAACAATTT+AGG + chr7_4:14355427-14355446 None:intergenic 15.0%
!!! TTTATAAATTCCAAGTTTTA+GGG + chr7_4:14356293-14356312 None:intergenic 15.0%
!!! TTTTATAAATTCCAAGTTTT+AGG + chr7_4:14356294-14356313 None:intergenic 15.0%
!!! ATTGAGAATTTTCAAATTTA+GGG + chr7_4:14356321-14356340 None:intergenic 15.0%
!!! AAAACTTAATAAGCTATTTT+TGG - chr7_4:14356412-14356431 Msa1141250:intron 15.0%
!! GCAAATAATAATGAATTTAA+AGG + chr7_4:14356853-14356872 None:intergenic 15.0%
!!! TAAAATTGTTCTGTTATTTT+CGG - chr7_4:14356936-14356955 Msa1141250:five_prime_UTR 15.0%
!!! GATTTTATTTGTTGTTGATT+AGG - chr7_4:14352784-14352803 Msa1141250:three_prime_UTR 20.0%
!!! TGTTTCTAAATTTGATTGAA+TGG - chr7_4:14352910-14352929 Msa1141250:CDS 20.0%
!!! TAATAGTATTGAATTTGAGT+TGG - chr7_4:14353076-14353095 Msa1141250:intron 20.0%
!!! TTGATTAGTTAGATTTCAAA+TGG - chr7_4:14353129-14353148 Msa1141250:intron 20.0%
!!! TGATTAGTTAGATTTCAAAT+GGG - chr7_4:14353130-14353149 Msa1141250:intron 20.0%
!! GAAAACTTTATCATATACAA+TGG + chr7_4:14353179-14353198 None:intergenic 20.0%
!!! ATAAAGTTTTCATTTTTGAG+AGG - chr7_4:14353188-14353207 Msa1141250:intron 20.0%
!! TTGAGATTCTTTATAGTTAA+TGG - chr7_4:14353344-14353363 Msa1141250:intron 20.0%
!!! AAACAAAATAGTTTGTAGTT+AGG + chr7_4:14353636-14353655 None:intergenic 20.0%
!!! TTTGAGGCTAAAAAATAATT+TGG + chr7_4:14353811-14353830 None:intergenic 20.0%
!!! AGAAATGATCTTATTGTTTT+TGG - chr7_4:14354084-14354103 Msa1141250:intron 20.0%
!!! CTATTTTCTCAAATTCAATT+AGG + chr7_4:14354573-14354592 None:intergenic 20.0%
!!! TTGATTATGTAGTTTTAACA+TGG - chr7_4:14355039-14355058 Msa1141250:intron 20.0%
!! ATTCTCTATCATAATTGAAA+AGG - chr7_4:14355317-14355336 Msa1141250:intron 20.0%
!! TTGAAAATGAAAATGTTGTT+AGG - chr7_4:14355389-14355408 Msa1141250:intron 20.0%
!!! TTATAAATTCCAAGTTTTAG+GGG + chr7_4:14356292-14356311 None:intergenic 20.0%
!!! GATTGAGAATTTTCAAATTT+AGG + chr7_4:14356322-14356341 None:intergenic 20.0%
!! CTTATACATAAGCATTTATA+TGG - chr7_4:14356535-14356554 Msa1141250:intron 20.0%
!! ATTAAGCTATTTATTCAAAG+AGG - chr7_4:14356582-14356601 Msa1141250:intron 20.0%
!! TTAAGCTATTTATTCAAAGA+GGG - chr7_4:14356583-14356602 Msa1141250:intron 20.0%
!! CATGTTATTATTCTAAATGT+TGG - chr7_4:14356890-14356909 Msa1141250:intron 20.0%
! AGGAAATGAAAATGGAAAAT+GGG + chr7_4:14352549-14352568 None:intergenic 25.0%
! CAAAAAAGAGGAAATGAAAA+TGG + chr7_4:14352557-14352576 None:intergenic 25.0%
! GAAAAGAAACATATACCTTT+GGG + chr7_4:14352709-14352728 None:intergenic 25.0%
! TGAAAAGAAACATATACCTT+TGG + chr7_4:14352710-14352729 None:intergenic 25.0%
! TTGATTAGGTAGATTTGAAA+TGG - chr7_4:14352798-14352817 Msa1141250:three_prime_UTR 25.0%
!! TGATTAGGTAGATTTGAAAT+GGG - chr7_4:14352799-14352818 Msa1141250:three_prime_UTR 25.0%
!!! GGTTTTATTTGTTCTTGATT+AGG - chr7_4:14352946-14352965 Msa1141250:intron 25.0%
! TTGATTAGGTAGATTTGAAA+TGG - chr7_4:14352798-14352817 Msa1141250:three_prime_UTR 25.0%
!! TGATTAGGTAGATTTGAAAT+GGG - chr7_4:14352799-14352818 Msa1141250:three_prime_UTR 25.0%
! TTCTTTATAGTTAATGGAGA+TGG - chr7_4:14353350-14353369 Msa1141250:intron 25.0%
! CAATTATTTAGCGATATTTG+AGG - chr7_4:14353501-14353520 Msa1141250:CDS 25.0%
! TTGAGGTAAAAAGTGAAATT+TGG - chr7_4:14353518-14353537 Msa1141250:CDS 25.0%
! TAATCAACTAGGTGTATATT+TGG - chr7_4:14353669-14353688 Msa1141250:CDS 25.0%
!! TGAGTTGAACAATTAATTTG+AGG + chr7_4:14353827-14353846 None:intergenic 25.0%
!!! GGTTTCAGAAAATTGTTTTT+TGG - chr7_4:14353884-14353903 Msa1141250:CDS 25.0%
! AATAGAGATTCATATCAATC+GGG + chr7_4:14354170-14354189 None:intergenic 25.0%
! CAATAGAGATTCATATCAAT+CGG + chr7_4:14354171-14354190 None:intergenic 25.0%
!! ACTAAGTTGACAAAAACAAA+AGG + chr7_4:14354312-14354331 None:intergenic 25.0%
! GTCATAAATCAAATGACAAA+TGG + chr7_4:14354343-14354362 None:intergenic 25.0%
! GCAATTAAAAAATGACTTAC+CGG + chr7_4:14355007-14355026 None:intergenic 25.0%
! TTGAAACACCAAAAGTAAAT+GGG + chr7_4:14355139-14355158 None:intergenic 25.0%
! AAATGTTGTTAGGAAGTAAA+TGG - chr7_4:14355399-14355418 Msa1141250:intron 25.0%
! AATGTTGTTAGGAAGTAAAT+GGG - chr7_4:14355400-14355419 Msa1141250:intron 25.0%
! CAAAATCTTCATCAAGAAAT+CGG + chr7_4:14355714-14355733 None:intergenic 25.0%
! AGAAAAAAGAGAAACAAGAA+AGG + chr7_4:14356232-14356251 None:intergenic 25.0%
! ATTATATGGCATAGTTAACT+AGG - chr7_4:14356266-14356285 Msa1141250:intron 25.0%
! CTTATTTCCATAAGTTATCT+AGG - chr7_4:14356435-14356454 Msa1141250:intron 25.0%
! TTCTATCATATTAGTCCATT+TGG + chr7_4:14356623-14356642 None:intergenic 25.0%
!!! AAATGGACTAATATGATAGA+AGG - chr7_4:14356622-14356641 Msa1141250:intron 25.0%
GAGGAAATGAAAATGGAAAA+TGG + chr7_4:14352550-14352569 None:intergenic 30.0%
GAGTCTAACAAACAAAAAAG+AGG + chr7_4:14352569-14352588 None:intergenic 30.0%
! TTGAATGGTGTTCTTGATTT+TGG - chr7_4:14352925-14352944 Msa1141250:intron 30.0%
!! TCATTTTTACCCTTTTTTGC+TGG - chr7_4:14353028-14353047 Msa1141250:intron 30.0%
TTATCCAAACCAGCAAAAAA+GGG + chr7_4:14353040-14353059 None:intergenic 30.0%
TTTATCCAAACCAGCAAAAA+AGG + chr7_4:14353041-14353060 None:intergenic 30.0%
! TCATTTTCATTGATCGATCT+AGG - chr7_4:14353245-14353264 Msa1141250:intron 30.0%
ATCTAGGTGTTTGTTTGATT+TGG - chr7_4:14353261-14353280 Msa1141250:intron 30.0%
AAGAATCTCAAAAACATTGC+TGG + chr7_4:14353335-14353354 None:intergenic 30.0%
AGGTAAAAAGTGAAATTTGG+TGG - chr7_4:14353521-14353540 Msa1141250:CDS 30.0%
AGAAAGAATAGATTCCGAAA+AGG - chr7_4:14353561-14353580 Msa1141250:CDS 30.0%
! GCATTATGGTATTTCCTTTT+CGG + chr7_4:14353578-14353597 None:intergenic 30.0%
!!! TACCATAATGCTTTGTTTTG+TGG - chr7_4:14353587-14353606 Msa1141250:CDS 30.0%
TAGTGCATGTTTAATCAACT+AGG - chr7_4:14353658-14353677 Msa1141250:CDS 30.0%
!!! TTTGGTTTTACATTTGCATG+AGG - chr7_4:14353687-14353706 Msa1141250:CDS 30.0%
TGGATGTGTTCGAATAATAT+TGG - chr7_4:14353731-14353750 Msa1141250:CDS 30.0%
TTGGATTGATATAGTAAGTG+AGG - chr7_4:14353903-14353922 Msa1141250:CDS 30.0%
AACTTAGTTGGCATTGTTTA+TGG - chr7_4:14353942-14353961 Msa1141250:CDS 30.0%
!!! TGATCTTATTGTTTTTGGCA+TGG - chr7_4:14354089-14354108 Msa1141250:intron 30.0%
GAGATTCTTCATAGAGAATT+GGG + chr7_4:14354247-14354266 None:intergenic 30.0%
AGTTGACAAAAACAAAAGGT+TGG + chr7_4:14354308-14354327 None:intergenic 30.0%
AAACTTAATGCTATCAACCA+TGG + chr7_4:14354485-14354504 None:intergenic 30.0%
TCATAATGCAGTACTTTAGT+TGG - chr7_4:14354518-14354537 Msa1141250:intron 30.0%
ATTAAAAAATGACTTACCGG+TGG + chr7_4:14355004-14355023 None:intergenic 30.0%
CTTGAAACACCAAAAGTAAA+TGG + chr7_4:14355140-14355159 None:intergenic 30.0%
! AGTTTTACTTAGTATGTCTG+TGG + chr7_4:14355370-14355389 None:intergenic 30.0%
TGTGAGAAGTAGGATTTATT+CGG - chr7_4:14355492-14355511 Msa1141250:intron 30.0%
AAAGTTCATCACATGACATA+TGG + chr7_4:14355551-14355570 None:intergenic 30.0%
!! TCCATTTGGATTAGTCATTT+AGG + chr7_4:14356609-14356628 None:intergenic 30.0%
!!! TACTGTTTTGAGAGAAAAGA+GGG - chr7_4:14356768-14356787 Msa1141250:intron 30.0%
TAAATGTTGGAGTGATTATG+AGG - chr7_4:14356903-14356922 Msa1141250:intron 30.0%
ATTCTGCGTATGAATTAACT+GGG - chr7_4:14356993-14357012 Msa1141250:five_prime_UTR 30.0%
! TTTTGCATACATATCAAACG+TGG + chr7_4:14357031-14357050 None:intergenic 30.0%
! AGAAACATATACCTTTGGGA+AGG + chr7_4:14352705-14352724 None:intergenic 35.0%
!!! TTTACCCTTTTTTGCTGGTT+TGG - chr7_4:14353033-14353052 Msa1141250:intron 35.0%
!! GGTGTTTGTTTGATTTGGAA+AGG - chr7_4:14353266-14353285 Msa1141250:intron 35.0%
GGATCTATCATTGTTAAGCT+TGG - chr7_4:14353371-14353390 Msa1141250:intron 35.0%
! GTCCACAAAACAAAGCATTA+TGG + chr7_4:14353592-14353611 None:intergenic 35.0%
! TAGTTTGTAGTTAGGAGAGT+GGG + chr7_4:14353628-14353647 None:intergenic 35.0%
! ATAGTTTGTAGTTAGGAGAG+TGG + chr7_4:14353629-14353648 None:intergenic 35.0%
GATATAGTAAGTGAGGTAAG+TGG - chr7_4:14353910-14353929 Msa1141250:CDS 35.0%
CAAGTGAATCGTATCTTGAT+TGG - chr7_4:14354131-14354150 Msa1141250:intron 35.0%
TGGGATTCATCGTAATGAAT+CGG + chr7_4:14354228-14354247 None:intergenic 35.0%
CGAGATTCTTCATAGAGAAT+TGG + chr7_4:14354248-14354267 None:intergenic 35.0%
! AGATTCCGATTTCTCTTTTC+AGG - chr7_4:14354591-14354610 Msa1141250:intron 35.0%
GGTCAAAAAGATGCATATGT+TGG - chr7_4:14354700-14354719 Msa1141250:CDS 35.0%
TAACGATTCCATGTTCAATG+GGG + chr7_4:14354768-14354787 None:intergenic 35.0%
CTAACGATTCCATGTTCAAT+GGG + chr7_4:14354769-14354788 None:intergenic 35.0%
! TATGTCTGCCCATTTACTTT+TGG - chr7_4:14355128-14355147 Msa1141250:intron 35.0%
! TCACTGACTGTTAAGATGAA+TGG - chr7_4:14355455-14355474 Msa1141250:intron 35.0%
! CACTGACTGTTAAGATGAAT+GGG - chr7_4:14355456-14355475 Msa1141250:intron 35.0%
! TATGTTTTCTGTCTCTATGC+AGG - chr7_4:14355581-14355600 Msa1141250:CDS 35.0%
!!! ATGAAGATTTTGACTGAACG+TGG - chr7_4:14355722-14355741 Msa1141250:intron 35.0%
GATATCAGGAAAGACTTGTA+CGG - chr7_4:14356016-14356035 Msa1141250:intron 35.0%
AGAAAATACAGTGTCTGGAT+TGG - chr7_4:14356157-14356176 Msa1141250:intron 35.0%
TTATCTGACATAAGCTCTCT+AGG - chr7_4:14356376-14356395 Msa1141250:intron 35.0%
!! AAGCTCTCTAGGATAACTTA+TGG - chr7_4:14356387-14356406 Msa1141250:intron 35.0%
AAGCTGTCCTAGATAACTTA+TGG + chr7_4:14356445-14356464 None:intergenic 35.0%
GCCTAAATGACTAATCCAAA+TGG - chr7_4:14356605-14356624 Msa1141250:intron 35.0%
AAGGCAGAATATGATGAATC+TGG - chr7_4:14356706-14356725 Msa1141250:intron 35.0%
!!! CTACTGTTTTGAGAGAAAAG+AGG - chr7_4:14356767-14356786 Msa1141250:intron 35.0%
AGAGAAAAGAGGGTTATTGA+AGG - chr7_4:14356778-14356797 Msa1141250:intron 35.0%
GAGAAAAGAGGGTTATTGAA+GGG - chr7_4:14356779-14356798 Msa1141250:intron 35.0%
CATTCTGCGTATGAATTAAC+TGG - chr7_4:14356992-14357011 Msa1141250:five_prime_UTR 35.0%
GAGAGTGGGAAAACATGAAA+GGG + chr7_4:14353614-14353633 None:intergenic 40.0%
ATAGTAAGTGAGGTAAGTGG+AGG - chr7_4:14353913-14353932 Msa1141250:CDS 40.0%
TAGTAAGTGAGGTAAGTGGA+GGG - chr7_4:14353914-14353933 Msa1141250:CDS 40.0%
! CAACCTCTTGTTTGTGACAA+TGG - chr7_4:14354041-14354060 Msa1141250:intron 40.0%
GTTCCATTGTCACAAACAAG+AGG + chr7_4:14354047-14354066 None:intergenic 40.0%
CTTGTTTGTGACAATGGAAC+TGG - chr7_4:14354047-14354066 Msa1141250:intron 40.0%
TTGTGACAATGGAACTGGAA+TGG - chr7_4:14354052-14354071 Msa1141250:intron 40.0%
CAATGGAACTGGAATGGTTA+AGG - chr7_4:14354058-14354077 Msa1141250:intron 40.0%
GGATTCATCGTAATGAATCG+GGG + chr7_4:14354226-14354245 None:intergenic 40.0%
GGGATTCATCGTAATGAATC+GGG + chr7_4:14354227-14354246 None:intergenic 40.0%
GACACGCTAAGTTTAGGTAA+TGG + chr7_4:14354286-14354305 None:intergenic 40.0%
TGATCTCGAGTTTGTAACCA+TGG - chr7_4:14354465-14354484 Msa1141250:intron 40.0%
TCCAGCCTGAAAAGAGAAAT+CGG + chr7_4:14354599-14354618 None:intergenic 40.0%
!! AGATGCATATGTTGGTGATG+AGG - chr7_4:14354708-14354727 Msa1141250:CDS 40.0%
CTCAAATACCCCATTGAACA+TGG - chr7_4:14354757-14354776 Msa1141250:CDS 40.0%
GCTAACGATTCCATGTTCAA+TGG + chr7_4:14354770-14354789 None:intergenic 40.0%
AACATGGAATCGTTAGCAAC+TGG - chr7_4:14354773-14354792 Msa1141250:CDS 40.0%
ACATGGAATCGTTAGCAACT+GGG - chr7_4:14354774-14354793 Msa1141250:CDS 40.0%
AACACGAAGCTCATTGTAGA+AGG + chr7_4:14354827-14354846 None:intergenic 40.0%
TTGAGTCATCTTCTCACGAT+TGG + chr7_4:14354902-14354921 None:intergenic 40.0%
AATAGCAACATACATGGCAG+GGG + chr7_4:14354947-14354966 None:intergenic 40.0%
GAATAGCAACATACATGGCA+GGG + chr7_4:14354948-14354967 None:intergenic 40.0%
TGAATAGCAACATACATGGC+AGG + chr7_4:14354949-14354968 None:intergenic 40.0%
! TGCCATGTATGTTGCTATTC+AGG - chr7_4:14354948-14354967 Msa1141250:CDS 40.0%
GAATCCAATCTAGAAGTTGC+TGG + chr7_4:14355065-14355084 None:intergenic 40.0%
TCTGTGGCTAGAATGACATT+TGG + chr7_4:14355354-14355373 None:intergenic 40.0%
AAGTAGCTTCTGTGAGAAGT+AGG - chr7_4:14355482-14355501 Msa1141250:intron 40.0%
! TCTCTATGCAGGTATTGTGT+TGG - chr7_4:14355592-14355611 Msa1141250:exon 40.0%
ATTGTGTTGGATTCTGGTGA+TGG - chr7_4:14355605-14355624 Msa1141250:intron 40.0%
! CTTCATGATGGAGTTGTATG+TGG + chr7_4:14355987-14356006 None:intergenic 40.0%
ATCAACATCGCACTTCATGA+TGG + chr7_4:14355999-14356018 None:intergenic 40.0%
TGAAGTGCGATGTTGATATC+AGG - chr7_4:14356002-14356021 Msa1141250:intron 40.0%
TACGGTAACATTGTGCTTTC+AGG - chr7_4:14356034-14356053 Msa1141250:intron 40.0%
GAGCAAGGAAATTTCTGCTT+TGG - chr7_4:14356093-14356112 Msa1141250:intron 40.0%
! CTTGATCTTCATGCTACTTG+GGG + chr7_4:14356119-14356138 None:intergenic 40.0%
! CCTTGATCTTCATGCTACTT+GGG + chr7_4:14356120-14356139 None:intergenic 40.0%
ACCTTGATCTTCATGCTACT+TGG + chr7_4:14356121-14356140 None:intergenic 40.0%
AAGTAGCATGAAGATCAAGG+TGG - chr7_4:14356120-14356139 Msa1141250:intron 40.0%
! ACACTGTATTTTCTCTCAGG+TGG + chr7_4:14356151-14356170 None:intergenic 40.0%
! CAGACACTGTATTTTCTCTC+AGG + chr7_4:14356154-14356173 None:intergenic 40.0%
CTGAGAGAAAATACAGTGTC+TGG - chr7_4:14356152-14356171 Msa1141250:intron 40.0%
! AAATACAGTGTCTGGATTGG+AGG - chr7_4:14356160-14356179 Msa1141250:intron 40.0%
AACAAAACAAACCTGCTGGA+AGG + chr7_4:14356209-14356228 None:intergenic 40.0%
AAGGAACAAAACAAACCTGC+TGG + chr7_4:14356213-14356232 None:intergenic 40.0%
TTAACTAGGCCCCTAAAACT+TGG - chr7_4:14356280-14356299 Msa1141250:intron 40.0%
! TTTTCTTACGAGTGCAGATG+TGG - chr7_4:14356677-14356696 Msa1141250:intron 40.0%
CACTTTCTGTGGACAATTGA+TGG + chr7_4:14356733-14356752 None:intergenic 40.0%
! AAGTGAGAGAGAGAGTGTGT+GGG + chr7_4:14352630-14352649 None:intergenic 45.0%
GAAGGAGAGAAAATGCACAG+AGG + chr7_4:14352655-14352674 None:intergenic 45.0%
TTTGGGAAGGAAAATGCCGA+GGG + chr7_4:14352692-14352711 None:intergenic 45.0%
GGAGAGTGGGAAAACATGAA+AGG + chr7_4:14353615-14353634 None:intergenic 45.0%
AGTAAGTGAGGTAAGTGGAG+GGG - chr7_4:14353915-14353934 Msa1141250:CDS 45.0%
TGGAGGGGAGAAAACTTAGT+TGG - chr7_4:14353930-14353949 Msa1141250:CDS 45.0%
CATCGTCTACTACTATCTGC+AGG + chr7_4:14354003-14354022 None:intergenic 45.0%
CTGCAGATAGTAGTAGACGA+TGG - chr7_4:14354001-14354020 Msa1141250:CDS 45.0%
AGGTTGGACACGCTAAGTTT+AGG + chr7_4:14354292-14354311 None:intergenic 45.0%
!! TCCGATTTCTCTTTTCAGGC+TGG - chr7_4:14354595-14354614 Msa1141250:intron 45.0%
!! TCTTTTCAGGCTGGATTTGC+TGG - chr7_4:14354604-14354623 Msa1141250:intron 45.0%
TGATGAGGCACAGTCTAAGA+GGG - chr7_4:14354723-14354742 Msa1141250:CDS 45.0%
GGGACGACATGGAAAAGATT+TGG - chr7_4:14354794-14354813 Msa1141250:CDS 45.0%
!! AAAGCACTGGGTGTTCTTCT+GGG + chr7_4:14354852-14354871 None:intergenic 45.0%
!! AAAAGCACTGGGTGTTCTTC+TGG + chr7_4:14354853-14354872 None:intergenic 45.0%
!! ACACCCAGTGCTTTTAACTG+AGG - chr7_4:14354858-14354877 Msa1141250:CDS 45.0%
!! GAGCCTCAGTTAAAAGCACT+GGG + chr7_4:14354864-14354883 None:intergenic 45.0%
!! TCTTCTCACGATTGGCCTTA+GGG + chr7_4:14354894-14354913 None:intergenic 45.0%
!! ATCTTCTCACGATTGGCCTT+AGG + chr7_4:14354895-14354914 None:intergenic 45.0%
GGCCTGAATAGCAACATACA+TGG + chr7_4:14354953-14354972 None:intergenic 45.0%
ACTGGCGTACAGTGAAAGAA+CGG + chr7_4:14354974-14354993 None:intergenic 45.0%
ATGGCCAGCAACTTCTAGAT+TGG - chr7_4:14355058-14355077 Msa1141250:intron 45.0%
! GCAGGTATTGTGTTGGATTC+TGG - chr7_4:14355599-14355618 Msa1141250:exon 45.0%
CATACTGTCCCTATCTACGA+GGG - chr7_4:14355635-14355654 Msa1141250:intron 45.0%
AACAATTTCTCGCTCTGCTG+AGG + chr7_4:14355762-14355781 None:intergenic 45.0%
CAGCTCTTGCTCATAGTCAA+GGG + chr7_4:14355816-14355835 None:intergenic 45.0%
CAATTCGTAGCTCTTCTCGA+CGG + chr7_4:14355861-14355880 None:intergenic 45.0%
AAGAGCTACGAATTGCCTGA+TGG - chr7_4:14355866-14355885 Msa1141250:intron 45.0%
CTATCATGGATGGTTGGAAC+AGG + chr7_4:14355937-14355956 None:intergenic 45.0%
CTGTTCCAACCATCCATGAT+AGG - chr7_4:14355935-14355954 Msa1141250:intron 45.0%
CCATTCCTATCATGGATGGT+TGG + chr7_4:14355943-14355962 None:intergenic 45.0%
CCAACCATCCATGATAGGAA+TGG - chr7_4:14355940-14355959 Msa1141250:intron 45.0%
GCTTCCATTCCTATCATGGA+TGG + chr7_4:14355947-14355966 None:intergenic 45.0%
! TGCTGCTTCCATTCCTATCA+TGG + chr7_4:14355951-14355970 None:intergenic 45.0%
ATGATAGGAATGGAAGCAGC+AGG - chr7_4:14355950-14355969 Msa1141250:intron 45.0%
GGTAACATTGTGCTTTCAGG+AGG - chr7_4:14356037-14356056 Msa1141250:intron 45.0%
TCATTCTGTCAGCAATGCCT+GGG + chr7_4:14356075-14356094 None:intergenic 45.0%
CATTGCTGACAGAATGAGCA+AGG - chr7_4:14356078-14356097 Msa1141250:intron 45.0%
CCCAAGTAGCATGAAGATCA+AGG - chr7_4:14356117-14356136 Msa1141250:intron 45.0%
! AGTGCAGATGTGGATTGCAA+AGG - chr7_4:14356687-14356706 Msa1141250:intron 45.0%
!! CAGCTTAGAAGCACTTTCTG+TGG + chr7_4:14356744-14356763 None:intergenic 45.0%
GCTACAAGTTGCAATGCTTC+TGG + chr7_4:14356827-14356846 None:intergenic 45.0%
!!! TATCAATTTTTATTTTTATT+TGG - chr7_4:14353221-14353240 Msa1141250:intron 5.0%
!!! ATCAATTTTTATTTTTATTT+GGG - chr7_4:14353222-14353241 Msa1141250:intron 5.0%
!!! TATAATTTTTATTTTATCAA+CGG + chr7_4:14355172-14355191 None:intergenic 5.0%
TGTGTGGGAGAGAGAGAAAG+CGG + chr7_4:14352615-14352634 None:intergenic 50.0%
! GAAGTGAGAGAGAGAGTGTG+TGG + chr7_4:14352631-14352650 None:intergenic 50.0%
!! AGGGTGATGGAAGGCAAAGA+AGG + chr7_4:14352673-14352692 None:intergenic 50.0%
TCTTTGCCTTCCATCACCCT+CGG - chr7_4:14352673-14352692 Msa1141250:three_prime_UTR 50.0%
!! AAAATGCCGAGGGTGATGGA+AGG + chr7_4:14352682-14352701 None:intergenic 50.0%
AAGGAAAATGCCGAGGGTGA+TGG + chr7_4:14352686-14352705 None:intergenic 50.0%
! CTTTGGGAAGGAAAATGCCG+AGG + chr7_4:14352693-14352712 None:intergenic 50.0%
! CTCGGCATTTTCCTTCCCAA+AGG - chr7_4:14352691-14352710 Msa1141250:three_prime_UTR 50.0%
GCTGTGTTTCCCAGCATTGT+AGG - chr7_4:14354643-14354662 Msa1141250:CDS 50.0%
ACTGGTGTGATGGTTGGCAT+GGG - chr7_4:14354679-14354698 Msa1141250:CDS 50.0%
GTGATGAGGCACAGTCTAAG+AGG - chr7_4:14354722-14354741 Msa1141250:CDS 50.0%
GATGAGGCACAGTCTAAGAG+GGG - chr7_4:14354724-14354743 Msa1141250:CDS 50.0%
!! AAGCACTGGGTGTTCTTCTG+GGG + chr7_4:14354851-14354870 None:intergenic 50.0%
! GGAGCCTCAGTTAAAAGCAC+TGG + chr7_4:14354865-14354884 None:intergenic 50.0%
GTTCTTTCACTGTACGCCAG+TGG - chr7_4:14354973-14354992 Msa1141250:CDS 50.0%
CCTCGTAGATAGGGACAGTA+TGG + chr7_4:14355637-14355656 None:intergenic 50.0%
CCATACTGTCCCTATCTACG+AGG - chr7_4:14355634-14355653 Msa1141250:intron 50.0%
GGGCATAACCCTCGTAGATA+GGG + chr7_4:14355646-14355665 None:intergenic 50.0%
AGGGCATAACCCTCGTAGAT+AGG + chr7_4:14355647-14355666 None:intergenic 50.0%
ACGAAGGATGGCATGTGGAA+GGG + chr7_4:14355666-14355685 None:intergenic 50.0%
TCAAGACGAAGGATGGCATG+TGG + chr7_4:14355671-14355690 None:intergenic 50.0%
TGCCATCCTTCGTCTTGATC+TGG - chr7_4:14355673-14355692 Msa1141250:intron 50.0%
AGCCAGATCAAGACGAAGGA+TGG + chr7_4:14355678-14355697 None:intergenic 50.0%
ATCCTTCGTCTTGATCTGGC+TGG - chr7_4:14355677-14355696 Msa1141250:intron 50.0%
AATTTCTCGCTCTGCTGAGG+TGG + chr7_4:14355759-14355778 None:intergenic 50.0%
CCAGCTCTTGCTCATAGTCA+AGG + chr7_4:14355817-14355836 None:intergenic 50.0%
CCTTGACTATGAGCAAGAGC+TGG - chr7_4:14355814-14355833 Msa1141250:intron 50.0%
! CTACGAATTGCCTGATGGAC+AGG - chr7_4:14355871-14355890 Msa1141250:intron 50.0%
ATGGTGATCACCTGTCCATC+AGG + chr7_4:14355884-14355903 None:intergenic 50.0%
GATGGACAGGTGATCACCAT+CGG - chr7_4:14355884-14355903 Msa1141250:intron 50.0%
AGACGAGCGTTTCAGATGTC+CGG - chr7_4:14355907-14355926 Msa1141250:intron 50.0%
CTCATTCTGTCAGCAATGCC+TGG + chr7_4:14356076-14356095 None:intergenic 50.0%
! CTGGATTGGAGGTTCCATCT+TGG - chr7_4:14356171-14356190 Msa1141250:intron 50.0%
GGTGCTAAGAGATGCCAAGA+TGG + chr7_4:14356188-14356207 None:intergenic 50.0%
ATCTCTTAGCACCTTCCAGC+AGG - chr7_4:14356195-14356214 Msa1141250:intron 50.0%
TGCTGGGAAACACAGCACGA+GGG + chr7_4:14354639-14354658 None:intergenic 55.0%
ATGCTGGGAAACACAGCACG+AGG + chr7_4:14354640-14354659 None:intergenic 55.0%
CGAGGACGACCTACAATGCT+GGG + chr7_4:14354655-14354674 None:intergenic 55.0%
ACGAGGACGACCTACAATGC+TGG + chr7_4:14354656-14354675 None:intergenic 55.0%
TCCTCGTCACACTGGTGTGA+TGG - chr7_4:14354669-14354688 Msa1141250:CDS 55.0%
ACCATCACACCAGTGTGACG+AGG + chr7_4:14354673-14354692 None:intergenic 55.0%
CGTCACACTGGTGTGATGGT+TGG - chr7_4:14354673-14354692 Msa1141250:CDS 55.0%
CACTGGTGTGATGGTTGGCA+TGG - chr7_4:14354678-14354697 Msa1141250:CDS 55.0%
CGTTAGCAACTGGGACGACA+TGG - chr7_4:14354783-14354802 Msa1141250:CDS 55.0%
TGAGGCTCCTCTCAACCCTA+AGG - chr7_4:14354876-14354895 Msa1141250:CDS 55.0%
!! CGATTGGCCTTAGGGTTGAG+AGG + chr7_4:14354886-14354905 None:intergenic 55.0%
GACGAAGGATGGCATGTGGA+AGG + chr7_4:14355667-14355686 None:intergenic 55.0%
GACCAGCCAGATCAAGACGA+AGG + chr7_4:14355682-14355701 None:intergenic 55.0%
! TCTGAAACGCTCGTCTCCGA+TGG + chr7_4:14355903-14355922 None:intergenic 55.0%
GATGGTTGGAACAGGACCTC+CGG + chr7_4:14355929-14355948 None:intergenic 55.0%
GGAGGAACAACCATGTTCCC+AGG - chr7_4:14356055-14356074 Msa1141250:intron 55.0%
GTCAGCAATGCCTGGGAACA+TGG + chr7_4:14356068-14356087 None:intergenic 55.0%
GTAGACGATGGCAGACGCTG+AGG - chr7_4:14354013-14354032 Msa1141250:intron 60.0%
GCTGGGAAACACAGCACGAG+GGG + chr7_4:14354638-14354657 None:intergenic 60.0%
GTAGGTCGTCCTCGTCACAC+TGG - chr7_4:14354661-14354680 Msa1141250:CDS 60.0%
TACGCCAGTGGTCGTACCAC+CGG - chr7_4:14354985-14355004 Msa1141250:CDS 60.0%
CTTACCGGTGGTACGACCAC+TGG + chr7_4:14354992-14355011 None:intergenic 60.0%
AGCAAGAGCTGGAGACAGCC+AGG - chr7_4:14355825-14355844 Msa1141250:intron 60.0%
GCTCTTCTCGACGGATGAGC+TGG + chr7_4:14355852-14355871 None:intergenic 60.0%
CGAGCGTTTCAGATGTCCGG+AGG - chr7_4:14355910-14355929 Msa1141250:intron 60.0%
CTCGACGGATGAGCTGGTCC+TGG + chr7_4:14355846-14355865 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 14352534 14357095 14352534 ID=Msa1141250;Name=Msa1141250
chr7_4 mRNA 14352534 14357095 14352534 ID=Msa1141250-mRNA-1;Parent=Msa1141250;Name=Msa1141250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=192|1|1|1|0.75|0.6|5|336|377
chr7_4 exon 14352534 14352935 14352534 ID=Msa1141250-mRNA-1:exon:3365;Parent=Msa1141250-mRNA-1
chr7_4 exon 14353413 14354026 14353413 ID=Msa1141250-mRNA-1:exon:3364;Parent=Msa1141250-mRNA-1
chr7_4 exon 14354623 14355016 14354623 ID=Msa1141250-mRNA-1:exon:3363;Parent=Msa1141250-mRNA-1
chr7_4 exon 14355550 14355622 14355550 ID=Msa1141250-mRNA-1:exon:3362;Parent=Msa1141250-mRNA-1
chr7_4 exon 14356917 14357095 14356917 ID=Msa1141250-mRNA-1:exon:3361;Parent=Msa1141250-mRNA-1
chr7_4 five_prime_UTR 14356917 14357095 14356917 ID=Msa1141250-mRNA-1:five_prime_utr;Parent=Msa1141250-mRNA-1
chr7_4 five_prime_UTR 14355610 14355622 14355610 ID=Msa1141250-mRNA-1:five_prime_utr;Parent=Msa1141250-mRNA-1
chr7_4 CDS 14355550 14355609 14355550 ID=Msa1141250-mRNA-1:cds;Parent=Msa1141250-mRNA-1
chr7_4 CDS 14354623 14355016 14354623 ID=Msa1141250-mRNA-1:cds;Parent=Msa1141250-mRNA-1
chr7_4 CDS 14353413 14354026 14353413 ID=Msa1141250-mRNA-1:cds;Parent=Msa1141250-mRNA-1
chr7_4 CDS 14352870 14352935 14352870 ID=Msa1141250-mRNA-1:cds;Parent=Msa1141250-mRNA-1
chr7_4 three_prime_UTR 14352534 14352869 14352534 ID=Msa1141250-mRNA-1:three_prime_utr;Parent=Msa1141250-mRNA-1
Gene Sequence

>Msa1141250

ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCCCCTCGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAGAGGGGTATTTTGACTCTCAAATACCCCATTGAACATGGAATCGTTAGCAACTGGGACGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCAGAAGAACACCCAGTGCTTTTAACTGAGGCTCCTCTCAACCCTAAGGCCAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTTAATACCCCTGCCATGTATGTTGCTATTCAGGCCGTTCTTTCACTGTACGCCAGTGGTCGTACCACCGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCATACTGTCCCTATCTACGAGGGTTATGCCCTTCCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGCGATCTTACCGATTTCTTGATGAAGATTTTGACTGAACGTGGTTATTCTTTTACCACCTCAGCAGAGCGAGAAATTGTTCGTGACGTGAAAGAAAAGCTTTCATACATTGCCCTTGACTATGAGCAAGAGCTGGAGACAGCCAGGACCAGCTCATCCGTCGAGAAGAGCTACGAATTGCCTGATGGACAGGTGATCACCATCGGAGACGAGCGTTTCAGATGTCCGGAGGTCCTGTTCCAACCATCCATGATAGGAATGGAAGCAGCAGGCATTCACGAGACCACATACAACTCCATCATGAAGTGCGATGTTGATATCAGGAAAGACTTGTACGGTAACATTGTGCTTTCAGGAGGAACAACCATGTTCCCAGGCATTGCTGACAGAATGAGCAAGGAAATTTCTGCTTTGGCCCCAAGTAGCATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCCATCTTGGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGTCCATCAATTGTCCACAGAAAGTGCTTCTAA

Protein sequence

>Msa1141250

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*