Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074090 | BBH06709.1 | 61.972 | 284 | 76 | 3 | 23 | 274 | 8 | 291 | 1.45e-121 | 359 |
| Msa0074090 | BBH06709.1 | 70.229 | 131 | 37 | 1 | 7 | 137 | 154 | 282 | 8.42e-54 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074090 | sp|P32045|PRP2_SOLLC | 68.148 | 135 | 40 | 1 | 6 | 137 | 2 | 136 | 6.44e-61 | 192 |
| Msa0074090 | sp|P32045|PRP2_SOLLC | 62.774 | 137 | 50 | 1 | 137 | 272 | 7 | 143 | 2.08e-58 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074090 | A0A4Y1RR05 | 61.972 | 284 | 76 | 3 | 23 | 274 | 8 | 291 | 6.94e-122 | 359 |
| Msa0074090 | A0A4Y1RR05 | 70.229 | 131 | 37 | 1 | 7 | 137 | 154 | 282 | 4.02e-54 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032270 | Msa0074090 | 0.851079 | 1.120958e-60 | -8.615850e-47 |
| Msa0074090 | Msa0127300 | 0.899616 | 1.662105e-77 | -8.615850e-47 |
| Msa0074090 | Msa0166320 | 0.831653 | 1.477616e-55 | -8.615850e-47 |
| Msa0074090 | Msa0172410 | 0.838780 | 2.346401e-57 | -8.615850e-47 |
| Msa0074090 | Msa0329700 | 0.818877 | 1.558249e-52 | -8.615850e-47 |
| Msa0074090 | Msa1396830 | 0.801106 | 1.052942e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074090 | MtrunA17_Chr1g0190641 | 97.826 | 138 | 3 | 0 | 137 | 274 | 4 | 141 | 1.96e-98 | 284 |
| Msa0074090 | MtrunA17_Chr1g0190641 | 57.252 | 131 | 55 | 1 | 7 | 137 | 3 | 132 | 1.13e-49 | 160 |
| Msa0074090 | MtrunA17_Chr1g0190651 | 97.810 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 2.42e-95 | 276 |
| Msa0074090 | MtrunA17_Chr1g0190651 | 58.219 | 146 | 60 | 1 | 130 | 274 | 1 | 146 | 8.63e-58 | 181 |
| Msa0074090 | MtrunA17_Chr1g0190671 | 83.916 | 143 | 23 | 0 | 1 | 143 | 1 | 143 | 4.02e-84 | 248 |
| Msa0074090 | MtrunA17_Chr1g0190671 | 59.420 | 138 | 55 | 1 | 136 | 272 | 7 | 144 | 5.48e-56 | 177 |
| Msa0074090 | MtrunA17_Chr1g0190661 | 83.942 | 137 | 22 | 0 | 1 | 137 | 1 | 137 | 7.46e-82 | 242 |
| Msa0074090 | MtrunA17_Chr1g0190661 | 61.481 | 135 | 48 | 2 | 142 | 272 | 10 | 144 | 6.52e-57 | 179 |
| Msa0074090 | MtrunA17_Chr7g0274181 | 70.085 | 117 | 35 | 0 | 158 | 274 | 70 | 186 | 2.08e-59 | 187 |
| Msa0074090 | MtrunA17_Chr7g0274181 | 70.909 | 110 | 32 | 0 | 29 | 138 | 69 | 178 | 1.46e-52 | 170 |
| Msa0074090 | MtrunA17_Chr6g0484021 | 50.955 | 157 | 57 | 4 | 137 | 274 | 26 | 181 | 3.09e-43 | 155 |
| Msa0074090 | MtrunA17_Chr6g0484021 | 52.448 | 143 | 48 | 4 | 10 | 135 | 31 | 170 | 3.60e-39 | 144 |
| Msa0074090 | MtrunA17_Chr6g0483971 | 53.788 | 132 | 56 | 3 | 144 | 272 | 13 | 142 | 1.37e-41 | 145 |
| Msa0074090 | MtrunA17_Chr6g0483971 | 52.308 | 130 | 55 | 3 | 10 | 137 | 11 | 135 | 4.30e-38 | 135 |
| Msa0074090 | MtrunA17_Chr6g0484031 | 42.759 | 145 | 71 | 3 | 137 | 273 | 6 | 146 | 2.21e-32 | 124 |
| Msa0074090 | MtrunA17_Chr6g0484031 | 45.185 | 135 | 60 | 3 | 10 | 137 | 11 | 138 | 7.04e-31 | 120 |
| Msa0074090 | MtrunA17_Chr6g0484041 | 48.252 | 143 | 54 | 5 | 10 | 137 | 23 | 160 | 7.29e-31 | 120 |
| Msa0074090 | MtrunA17_Chr6g0484041 | 42.667 | 150 | 68 | 4 | 139 | 272 | 20 | 167 | 1.36e-30 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074090 | AT3G04720.1 | 66.667 | 120 | 40 | 0 | 155 | 274 | 74 | 193 | 7.32e-58 | 184 |
| Msa0074090 | AT3G04720.1 | 71.053 | 114 | 33 | 0 | 24 | 137 | 71 | 184 | 4.07e-53 | 172 |
Find 78 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCCTTCTGTGGACCTGC+TGG | 0.294447 | 1_2:+48272485 | Msa0074090:CDS |
| TTGTCATGGCGTAGCAAATA+TGG | 0.300884 | 1_2:+48272458 | Msa0074090:CDS |
| TTGTCATGGCGTAGCAAATA+TGG | 0.308099 | 1_2:+48266543 | Msa0074090:CDS |
| ACTGTTCTGTGTTCTTGTTT+TGG | 0.321644 | 1_2:+48272319 | Msa0074090:CDS |
| TCTCTGCCTGTTGGCCCGGC+TGG | 0.368492 | 1_2:-48266585 | None:intergenic |
| ACAACCCTGAGCAACATAAC+TGG | 0.370802 | 1_2:+48272384 | Msa0074090:CDS |
| TTCTTGTGGCCGTTGCTTGA+GGG | 0.373798 | 1_2:+48272523 | Msa0074090:CDS |
| TTCTATCTGAGTCGAGCCTT+TGG | 0.375815 | 1_2:-48273099 | None:intergenic |
| TAGGTGACAAACACTAAAAC+TGG | 0.376685 | 1_2:+48273007 | Msa0074090:intron |
| CAAGGGCTGGTTTGCATCCC+AGG | 0.379158 | 1_2:-48266523 | None:intergenic |
| ACAACCCTCAGAATATTAAC+TGG | 0.383186 | 1_2:+48266469 | Msa0074090:CDS |
| TGTGGACCAGCCGGGCCAAC+AGG | 0.387791 | 1_2:+48266579 | Msa0074090:CDS |
| TTAGTAGTGTGTTTCCTTGT+GGG | 0.389171 | 1_2:+48266390 | Msa0074090:CDS |
| CAGGTGACAAATACTGCAAC+TGG | 0.420771 | 1_2:+48268985 | Msa0074090:intron |
| CTTCTTGTGGCCGTTGCTTG+AGG | 0.421339 | 1_2:+48272522 | Msa0074090:CDS |
| CTGCCTTCTGTGGACCTGCT+GGG | 0.422750 | 1_2:+48272486 | Msa0074090:CDS |
| AAGTCCCAGTTATGTTGCTC+AGG | 0.425651 | 1_2:-48272389 | None:intergenic |
| GTCAGAGTGCAAACAACGTT+AGG | 0.437077 | 1_2:+48266430 | Msa0074090:CDS |
| TGTGGACCTGCTGGGCCTCA+AGG | 0.438565 | 1_2:+48272494 | Msa0074090:CDS |
| TTATTGATCAATGCCACAAT+GGG | 0.441698 | 1_2:+48273050 | Msa0074090:CDS |
| AGATAGAAGTGGGAATGCTC+AGG | 0.461924 | 1_2:+48273114 | Msa0074090:CDS |
| GCTTGGCCTTGAGGCCCAGC+AGG | 0.467802 | 1_2:-48272500 | None:intergenic |
| CCAGTGTATACTGTGCTACC+TGG | 0.475825 | 1_2:+48266505 | Msa0074090:CDS |
| AAATACTGCAACTGGAGCTC+AGG | 0.488941 | 1_2:+48268993 | Msa0074090:CDS |
| ATCTAAGTCCAGTCCACCAT+TGG | 0.492671 | 1_2:-48269043 | None:intergenic |
| TCAAATTGATACCAATGGAC+AGG | 0.496103 | 1_2:+48269080 | Msa0074090:CDS |
| TGCTACGCCATGACAAGGGC+TGG | 0.498360 | 1_2:-48266536 | None:intergenic |
| AGAATCTCTGCCTGTTGGCC+CGG | 0.502065 | 1_2:-48266589 | None:intergenic |
| CCAGTGCTCCAATGGTGGAC+TGG | 0.503700 | 1_2:+48269035 | Msa0074090:CDS |
| CCAGTCCACCATTGGAGCAC+TGG | 0.503905 | 1_2:-48269035 | None:intergenic |
| AGCAACGGCCACAAGAAGCT+TGG | 0.504478 | 1_2:-48272517 | None:intergenic |
| TGCTACGCCATGACAAAGGC+TGG | 0.514008 | 1_2:-48272451 | None:intergenic |
| CCGCAAGAATCTCTGCCTGT+TGG | 0.525418 | 1_2:-48266594 | None:intergenic |
| TGGACGTTGGTGTGTTCCAA+AGG | 0.527318 | 1_2:+48273083 | Msa0074090:CDS |
| TGGCCCGGCTGGTCCACAAA+AGG | 0.528182 | 1_2:-48266574 | None:intergenic |
| TAGTCCCAGTTAATATTCTG+AGG | 0.529315 | 1_2:-48266474 | None:intergenic |
| GTTAGTAGTGTGTTTCCTTG+TGG | 0.530469 | 1_2:+48266389 | Msa0074090:CDS |
| ATTCTGAACGCCCTGTCCAT+TGG | 0.534339 | 1_2:-48269091 | None:intergenic |
| TTCAATCAAATTGATACCAA+TGG | 0.541175 | 1_2:+48269075 | Msa0074090:CDS |
| CCTCAAGGCCAAGCTTCTTG+TGG | 0.552466 | 1_2:+48272509 | Msa0074090:CDS |
| CAACCCTGAGCAACATAACT+GGG | 0.553138 | 1_2:+48272385 | Msa0074090:CDS |
| AGGCCCAGCAGGTCCACAGA+AGG | 0.557934 | 1_2:-48272489 | None:intergenic |
| TCAGGTAACGGTGAGAATAG+TGG | 0.560842 | 1_2:+48269011 | Msa0074090:CDS |
| AATGGACAGGGCGTTCAGAA+TGG | 0.563067 | 1_2:+48269093 | Msa0074090:CDS |
| ATGCAGACCAGCCTTTGTCA+TGG | 0.566521 | 1_2:+48272444 | Msa0074090:CDS |
| AGAACAGTGACAACATGCAT+AGG | 0.568790 | 1_2:-48272304 | None:intergenic |
| ATAGTGGACCAGTGCTCCAA+TGG | 0.570594 | 1_2:+48269027 | Msa0074090:CDS |
| CATGGCGTAGCAAATATGGC+TGG | 0.575280 | 1_2:+48272462 | Msa0074090:CDS |
| TATGGCTGGACTGCCTTCTG+TGG | 0.577035 | 1_2:+48272476 | Msa0074090:CDS |
| CCACAAGAAGCTTGGCCTTG+AGG | 0.579744 | 1_2:-48272509 | None:intergenic |
| TCAGAGTGCAAACAACGTTA+GGG | 0.580216 | 1_2:+48266431 | Msa0074090:CDS |
| CAGTGTATACTGTGCTACCT+GGG | 0.580993 | 1_2:+48266506 | Msa0074090:CDS |
| GGCTCGACTCAGATAGAAGT+GGG | 0.582732 | 1_2:+48273104 | Msa0074090:CDS |
| ATGCAAACCAGCCCTTGTCA+TGG | 0.583448 | 1_2:+48266529 | Msa0074090:CDS |
| ATATTTGCTACGCCATGACA+AGG | 0.584472 | 1_2:-48266541 | None:intergenic |
| CAACCCTCAGAATATTAACT+GGG | 0.585355 | 1_2:+48266470 | Msa0074090:CDS |
| ATTATTGATCAATGCCACAA+TGG | 0.589070 | 1_2:+48273049 | Msa0074090:CDS |
| AGTCCCAGTTATGTTGCTCA+GGG | 0.592637 | 1_2:-48272388 | None:intergenic |
| AGTCCCAGTTAATATTCTGA+GGG | 0.592868 | 1_2:-48266473 | None:intergenic |
| TGCAACTGGAGCTCAGGTAA+CGG | 0.602926 | 1_2:+48268999 | Msa0074090:CDS |
| GAACAGTGACAACATGCATA+GGG | 0.603623 | 1_2:-48272303 | None:intergenic |
| CATGGCGTAGCAAATATGGT+TGG | 0.604474 | 1_2:+48266547 | Msa0074090:CDS |
| CAAATTGATACCAATGGACA+GGG | 0.605839 | 1_2:+48269081 | Msa0074090:CDS |
| AGGGTTGTATAAATTAAATG+TGG | 0.608521 | 1_2:-48272369 | None:intergenic |
| GTGGACCAGTGCTCCAATGG+TGG | 0.625188 | 1_2:+48269030 | Msa0074090:CDS |
| TATTTGCTACGCCATGACAA+AGG | 0.626209 | 1_2:-48272455 | None:intergenic |
| GATAGAAGTGGGAATGCTCA+GGG | 0.629789 | 1_2:+48273115 | Msa0074090:CDS |
| CCAAGCATACCCTCAAGCAA+CGG | 0.639130 | 1_2:-48272532 | None:intergenic |
| ATTGATCAATGCCACAATGG+GGG | 0.639653 | 1_2:+48273052 | Msa0074090:CDS |
| TGTGTGCAAATATATAGACT+TGG | 0.640179 | 1_2:-48266304 | None:intergenic |
| AGGCTCGACTCAGATAGAAG+TGG | 0.640187 | 1_2:+48273103 | Msa0074090:CDS |
| TCACTAACATCGTTCCCACA+AGG | 0.655781 | 1_2:-48266404 | None:intergenic |
| TATTTGCTACGCCATGACAA+GGG | 0.664421 | 1_2:-48266540 | None:intergenic |
| CCAACAGGCAGAGATTCTTG+CGG | 0.667081 | 1_2:+48266594 | Msa0074090:CDS |
| CCAGGTAGCACAGTATACAC+TGG | 0.671403 | 1_2:-48266505 | None:intergenic |
| TATTGATCAATGCCACAATG+GGG | 0.681120 | 1_2:+48273051 | Msa0074090:CDS |
| ATTAAATGTGGACTGCACAG+TGG | 0.717942 | 1_2:-48272357 | None:intergenic |
| GTGGGAACGATGTTAGTGAG+TGG | 0.748308 | 1_2:+48266408 | Msa0074090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTTCAAAAAAAAATTA+AGG | - | chr1_2:48266811-48266830 | None:intergenic | 10.0% |
| !! | TTTGAAAGAAAAAAAAAATA+AGG | + | chr1_2:48266820-48266839 | Msa0074090:intron | 10.0% |
| !!! | TAAAAATTAAGTTATTTTCT+TGG | + | chr1_2:48266879-48266898 | Msa0074090:intron | 10.0% |
| !! | AATTATATTTGTATAGTTTA+TGG | + | chr1_2:48267242-48267261 | Msa0074090:intron | 10.0% |
| !!! | TAAAATAATTATTTAGAATC+CGG | + | chr1_2:48268409-48268428 | Msa0074090:intron | 10.0% |
| !! | TTTAATTAGTAATAATATTG+TGG | + | chr1_2:48268947-48268966 | Msa0074090:intron | 10.0% |
| !!! | AAATAAATTAATTTGAAGTT+AGG | + | chr1_2:48269528-48269547 | Msa0074090:intron | 10.0% |
| !! | ATAATTACATTATATATTTG+TGG | - | chr1_2:48269860-48269879 | None:intergenic | 10.0% |
| !!! | CATTTTGAATATAAAAATTT+AGG | + | chr1_2:48270633-48270652 | Msa0074090:intron | 10.0% |
| !!! | ATGATGTTATATTAAATTTT+TGG | - | chr1_2:48270977-48270996 | None:intergenic | 10.0% |
| !! | AAATTTAATATAACATCATA+AGG | + | chr1_2:48270978-48270997 | Msa0074090:intron | 10.0% |
| !!! | AATGATAAAATATTTGATTT+GGG | - | chr1_2:48271230-48271249 | None:intergenic | 10.0% |
| !!! | AATTTAATAATTTTTTAACG+AGG | + | chr1_2:48271890-48271909 | Msa0074090:intron | 10.0% |
| !!! | TTTAAAATTTATATATTGGA+TGG | + | chr1_2:48272622-48272641 | Msa0074090:intron | 10.0% |
| !! | ATATTAGTTGATCATTTATA+AGG | + | chr1_2:48266771-48266790 | Msa0074090:intron | 15.0% |
| !! | TTCAAAAAAAAATTAAGGAT+AGG | - | chr1_2:48266806-48266825 | None:intergenic | 15.0% |
| !! | CATTATATTTATAATGGTTT+AGG | - | chr1_2:48267065-48267084 | None:intergenic | 15.0% |
| !! | ACTACTCATTATATTTATAA+TGG | - | chr1_2:48267071-48267090 | None:intergenic | 15.0% |
| !!! | ATGTGAGATATTATTTTTTT+AGG | + | chr1_2:48267567-48267586 | Msa0074090:intron | 15.0% |
| !! | TTAAATATATATAGTTCAGA+TGG | + | chr1_2:48267715-48267734 | Msa0074090:intron | 15.0% |
| !! | AAACTATCATTGATATTTAA+AGG | - | chr1_2:48268090-48268109 | None:intergenic | 15.0% |
| !! | AATTATCAAACAAAATAACA+TGG | + | chr1_2:48268122-48268141 | Msa0074090:intron | 15.0% |
| !! | TATAAAAAATTATCAAACTG+TGG | - | chr1_2:48268391-48268410 | None:intergenic | 15.0% |
| !!! | AAATTTCTACTTTTAGTTTT+AGG | + | chr1_2:48268804-48268823 | Msa0074090:intron | 15.0% |
| !!! | ATTTTTAGATTGAGTAAAAA+AGG | - | chr1_2:48269990-48270009 | None:intergenic | 15.0% |
| !!! | TTTTCAATATATATTTGACT+TGG | - | chr1_2:48270530-48270549 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTTTTTTTGCCT+TGG | + | chr1_2:48270835-48270854 | Msa0074090:intron | 15.0% |
| !!! | TTTTAAATTTTTTTTGCCTT+GGG | + | chr1_2:48270836-48270855 | Msa0074090:intron | 15.0% |
| !!! | TCTTAAATCTTTTCTATATT+CGG | - | chr1_2:48271087-48271106 | None:intergenic | 15.0% |
| !! | GAATGATAAAATATTTGATT+TGG | - | chr1_2:48271231-48271250 | None:intergenic | 15.0% |
| !!! | ATCTTACTTAAGTTTTTAAA+TGG | + | chr1_2:48271478-48271497 | Msa0074090:intron | 15.0% |
| !! | TCAAAATTGTTTAAAGATAA+AGG | + | chr1_2:48271539-48271558 | Msa0074090:intron | 15.0% |
| !!! | ATTTTTAAAATGTAAACCAA+CGG | - | chr1_2:48271869-48271888 | None:intergenic | 15.0% |
| !! | AACACAAAAAATTGAGAAAA+TGG | + | chr1_2:48266341-48266360 | Msa0074090:exon | 20.0% |
| !!! | ATTCTTTGTTAGTTTATTGA+TGG | - | chr1_2:48266707-48266726 | None:intergenic | 20.0% |
| !!! | AAAAAATAATTTGAGATGAG+TGG | - | chr1_2:48266857-48266876 | None:intergenic | 20.0% |
| !!! | TATAGCAATGTTTTAAAATC+CGG | + | chr1_2:48267289-48267308 | Msa0074090:intron | 20.0% |
| !!! | TGACTTTTTTTATTAAGACT+GGG | - | chr1_2:48267400-48267419 | None:intergenic | 20.0% |
| !!! | ATGACTTTTTTTATTAAGAC+TGG | - | chr1_2:48267401-48267420 | None:intergenic | 20.0% |
| !! | TAAAAAAATTATTCAATGCG+AGG | - | chr1_2:48267963-48267982 | None:intergenic | 20.0% |
| !!! | CAATGATAGTTTTTATAACA+CGG | + | chr1_2:48268098-48268117 | Msa0074090:intron | 20.0% |
| !!! | AACAGAGATTCTTTTATTTT+GGG | + | chr1_2:48268656-48268675 | Msa0074090:intron | 20.0% |
| !!! | TGTAATTATCCATTTTTTCT+AGG | + | chr1_2:48269871-48269890 | Msa0074090:intron | 20.0% |
| !!! | AATAATTTCGCATTTTCATT+TGG | + | chr1_2:48269922-48269941 | Msa0074090:intron | 20.0% |
| !! | AAAAAAAAGATTGAGTAGAA+AGG | - | chr1_2:48269958-48269977 | None:intergenic | 20.0% |
| !!! | TTTCTACTCAATCTTTTTTT+TGG | + | chr1_2:48269957-48269976 | Msa0074090:intron | 20.0% |
| !!! | ATTTCTAGTCTAAACTTTTT+AGG | + | chr1_2:48270143-48270162 | Msa0074090:intron | 20.0% |
| !!! | TTTAAATTTTTTTTGCCTTG+GGG | + | chr1_2:48270837-48270856 | Msa0074090:intron | 20.0% |
| !! | ATCTAATAATATTGAGAGTA+AGG | + | chr1_2:48271040-48271059 | Msa0074090:intron | 20.0% |
| !!! | ACAAAAAGAAATGTTTTGTA+AGG | + | chr1_2:48271510-48271529 | Msa0074090:intron | 20.0% |
| !! | GAAAAAAAAAAAGACAAGAA+AGG | - | chr1_2:48271636-48271655 | None:intergenic | 20.0% |
| !!! | ATGACTTAAATACTTTTAGA+TGG | - | chr1_2:48272598-48272617 | None:intergenic | 20.0% |
| !! | TTGAATTCTTACCATATTAT+TGG | + | chr1_2:48272805-48272824 | Msa0074090:intron | 20.0% |
| !!! | GAGTTTTATTTGCTTATTTT+CGG | - | chr1_2:48272865-48272884 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTTTCATTGTAG+AGG | - | chr1_2:48266332-48266351 | None:intergenic | 25.0% |
| !!! | TTAAGTTATTTTCTTGGTTG+CGG | + | chr1_2:48266885-48266904 | Msa0074090:intron | 25.0% |
| ! | AATATCACTCTTCTCAATTT+AGG | + | chr1_2:48267038-48267057 | Msa0074090:intron | 25.0% |
| ! | TTCATTACAACATTTGTCTA+GGG | - | chr1_2:48268014-48268033 | None:intergenic | 25.0% |
| ! | ATTCATTACAACATTTGTCT+AGG | - | chr1_2:48268015-48268034 | None:intergenic | 25.0% |
| ! | CAAAATAAAAGAATCTCTGT+TGG | - | chr1_2:48268657-48268676 | None:intergenic | 25.0% |
| !!! | CAACAGAGATTCTTTTATTT+TGG | + | chr1_2:48268655-48268674 | Msa0074090:intron | 25.0% |
| ! | TTCAATCAAATTGATACCAA+TGG | + | chr1_2:48269075-48269094 | Msa0074090:CDS | 25.0% |
| !!! | AACTATAGCTTTGTTAATTG+CGG | + | chr1_2:48269129-48269148 | Msa0074090:intron | 25.0% |
| ! | CCATAAATAAAACTAATGAG+CGG | + | chr1_2:48269239-48269258 | Msa0074090:intron | 25.0% |
| !! | ACTTTGAAAATTATGTTCCT+CGG | - | chr1_2:48269618-48269637 | None:intergenic | 25.0% |
| !! | TTTTAATGTGAAACTCTCAA+CGG | + | chr1_2:48269778-48269797 | Msa0074090:intron | 25.0% |
| !!! | AATAAGGAAGATTGATAATG+TGG | + | chr1_2:48269821-48269840 | Msa0074090:intron | 25.0% |
| ! | GTCTCAAAAATCAGATATAT+CGG | - | chr1_2:48270175-48270194 | None:intergenic | 25.0% |
| ! | CATAAAGAATTCATAAAGAG+TGG | + | chr1_2:48270576-48270595 | Msa0074090:intron | 25.0% |
| !!! | TAGTTTTTTTTCTTAGCTAG+GGG | - | chr1_2:48270707-48270726 | None:intergenic | 25.0% |
| !!! | GTAGTTTTTTTTCTTAGCTA+GGG | - | chr1_2:48270708-48270727 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTTTTTCTTAGCT+AGG | - | chr1_2:48270709-48270728 | None:intergenic | 25.0% |
| !!! | TTAAATTTTTTTTGCCTTGG+GGG | + | chr1_2:48270838-48270857 | Msa0074090:intron | 25.0% |
| !!! | TACTAGTTTTTTCTTAGCTA+GGG | + | chr1_2:48270902-48270921 | Msa0074090:intron | 25.0% |
| ! | ATATTATTAGATGTTGTGTG+TGG | - | chr1_2:48271032-48271051 | None:intergenic | 25.0% |
| ! | ATTTCATAAATATCTACCGT+TGG | + | chr1_2:48271850-48271869 | Msa0074090:intron | 25.0% |
| !! | GTTATAAGCAATGATTTTAC+TGG | + | chr1_2:48272163-48272182 | Msa0074090:intron | 25.0% |
| ! | AGGGTTGTATAAATTAAATG+TGG | - | chr1_2:48272372-48272391 | None:intergenic | 25.0% |
| ! | AAATAAAAGTTTACACGAGT+TGG | + | chr1_2:48272658-48272677 | Msa0074090:intron | 25.0% |
| ! | AAAGCTAATGCTTTATACTT+AGG | - | chr1_2:48272972-48272991 | None:intergenic | 25.0% |
| TGTGTGCAAATATATAGACT+TGG | - | chr1_2:48266307-48266326 | None:intergenic | 30.0% | |
| !! | TTTCTCTAAAATGAGAGAAG+TGG | - | chr1_2:48266639-48266658 | None:intergenic | 30.0% |
| TATTGTTAACACTTACCAGT+TGG | - | chr1_2:48267766-48267785 | None:intergenic | 30.0% | |
| AAAATTATTCAATGCGAGGA+CGG | - | chr1_2:48267959-48267978 | None:intergenic | 30.0% | |
| ATGTTAAGTGAACATATTGC+TGG | - | chr1_2:48268041-48268060 | None:intergenic | 30.0% | |
| CGATTTCAAAACATGGATAT+GGG | - | chr1_2:48268231-48268250 | None:intergenic | 30.0% | |
| !!! | CCATATCCATGTTTTGAAAT+CGG | + | chr1_2:48268229-48268248 | Msa0074090:intron | 30.0% |
| !!! | CATATCCATGTTTTGAAATC+GGG | + | chr1_2:48268230-48268249 | Msa0074090:intron | 30.0% |
| !!! | ATATCCATGTTTTGAAATCG+GGG | + | chr1_2:48268231-48268250 | Msa0074090:intron | 30.0% |
| ! | TAATTATTTAGAATCCGGTC+CGG | + | chr1_2:48268414-48268433 | Msa0074090:intron | 30.0% |
| !!! | AACATGTGTTTTTTGAGTAC+AGG | + | chr1_2:48268833-48268852 | Msa0074090:intron | 30.0% |
| CAAAGCTATAGTTAACTGTA+AGG | - | chr1_2:48269122-48269141 | None:intergenic | 30.0% | |
| !!! | CCGCTCATTAGTTTTATTTA+TGG | - | chr1_2:48269242-48269261 | None:intergenic | 30.0% |
| CCTTATTATCATCATTTCAG+CGG | - | chr1_2:48269808-48269827 | None:intergenic | 30.0% | |
| TTTACGTGTATGGTTATGTA+AGG | - | chr1_2:48269904-48269923 | None:intergenic | 30.0% | |
| TGCGAAATTATTTACGTGTA+TGG | - | chr1_2:48269914-48269933 | None:intergenic | 30.0% | |
| ! | TTAATTTGAGAGCAGTACTA+AGG | - | chr1_2:48270044-48270063 | None:intergenic | 30.0% |
| AAGACTAATTCGATTAAGAC+AGG | - | chr1_2:48270221-48270240 | None:intergenic | 30.0% | |
| ! | TGTCTTAATCGAATTAGTCT+TGG | + | chr1_2:48270220-48270239 | Msa0074090:intron | 30.0% |
| GATTCTCTTTAACCAATTCT+TGG | + | chr1_2:48270493-48270512 | Msa0074090:intron | 30.0% | |
| ! | GATTTTCTCAATCCAAGAAT+TGG | - | chr1_2:48270508-48270527 | None:intergenic | 30.0% |
| TGCCACAATATCAAAACTTA+GGG | - | chr1_2:48270740-48270759 | None:intergenic | 30.0% | |
| ! | TTTTGATATTGTGGCAGTTT+TGG | + | chr1_2:48270744-48270763 | Msa0074090:intron | 30.0% |
| ! | TTTGATATTGTGGCAGTTTT+GGG | + | chr1_2:48270745-48270764 | Msa0074090:intron | 30.0% |
| !!! | TAAATTTTTTTTGCCTTGGG+GGG | + | chr1_2:48270839-48270858 | Msa0074090:intron | 30.0% |
| !!! | GTACTAGTTTTTTCTTAGCT+AGG | + | chr1_2:48270901-48270920 | Msa0074090:intron | 30.0% |
| !!! | ACTAGTTTTTTCTTAGCTAG+GGG | + | chr1_2:48270903-48270922 | Msa0074090:intron | 30.0% |
| !! | TTTGTGGGTCGATTTTTATA+AGG | + | chr1_2:48271140-48271159 | Msa0074090:intron | 30.0% |
| ATTCACTCGCTAAAAAGATT+GGG | - | chr1_2:48271357-48271376 | None:intergenic | 30.0% | |
| TTACTAGCTCACAACTTAAT+TGG | - | chr1_2:48271392-48271411 | None:intergenic | 30.0% | |
| AGTTGAGAAGTAAAAGGATA+AGG | - | chr1_2:48271438-48271457 | None:intergenic | 30.0% | |
| ATGATATATGTTGTCCGAAT+CGG | - | chr1_2:48271745-48271764 | None:intergenic | 30.0% | |
| ! | CTAAATTTTACCTTGTGTAG+AGG | - | chr1_2:48271777-48271796 | None:intergenic | 30.0% |
| CAACCTTTGAATTAATAGTG+TGG | + | chr1_2:48272055-48272074 | Msa0074090:intron | 30.0% | |
| CTAGAAACGCTTGAATTTAT+AGG | - | chr1_2:48272216-48272235 | None:intergenic | 30.0% | |
| CTATAAATTCAAGCGTTTCT+AGG | + | chr1_2:48272214-48272233 | Msa0074090:intron | 30.0% | |
| !! | TTTACACGAGTTGGATTTTA+GGG | + | chr1_2:48272667-48272686 | Msa0074090:intron | 30.0% |
| ATTTGAACTTTAGTCCTTTG+TGG | + | chr1_2:48272774-48272793 | Msa0074090:intron | 30.0% | |
| TTTGAACTTTAGTCCTTTGT+GGG | + | chr1_2:48272775-48272794 | Msa0074090:intron | 30.0% | |
| TACACACTCATCCAATAATA+TGG | - | chr1_2:48272819-48272838 | None:intergenic | 30.0% | |
| !! | CTTTCATGTTTGTTGATGAT+AGG | + | chr1_2:48272988-48273007 | Msa0074090:intron | 30.0% |
| ATTATTGATCAATGCCACAA+TGG | + | chr1_2:48273049-48273068 | Msa0074090:CDS | 30.0% | |
| TTATTGATCAATGCCACAAT+GGG | + | chr1_2:48273050-48273069 | Msa0074090:CDS | 30.0% | |
| ! | AACTATGCTTTTGTAGATTG+TGG | + | chr1_2:48273151-48273170 | Msa0074090:CDS | 30.0% |
| TTAGTAGTGTGTTTCCTTGT+GGG | + | chr1_2:48266390-48266409 | Msa0074090:CDS | 35.0% | |
| ACAACCCTCAGAATATTAAC+TGG | + | chr1_2:48266469-48266488 | Msa0074090:CDS | 35.0% | |
| CAACCCTCAGAATATTAACT+GGG | + | chr1_2:48266470-48266489 | Msa0074090:CDS | 35.0% | |
| AGTCCCAGTTAATATTCTGA+GGG | - | chr1_2:48266476-48266495 | None:intergenic | 35.0% | |
| TAGTCCCAGTTAATATTCTG+AGG | - | chr1_2:48266477-48266496 | None:intergenic | 35.0% | |
| !! | CTTTGTTGCACTAACTTGTT+GGG | + | chr1_2:48266923-48266942 | Msa0074090:intron | 35.0% |
| !!! | CAATGTTTTAAAATCCGGAC+CGG | + | chr1_2:48267294-48267313 | Msa0074090:intron | 35.0% |
| AACAATATTGTGCTGCATGT+AGG | + | chr1_2:48267779-48267798 | Msa0074090:intron | 35.0% | |
| AGTATATGAGAATCGGGTAT+GGG | - | chr1_2:48267849-48267868 | None:intergenic | 35.0% | |
| AAGTATATGAGAATCGGGTA+TGG | - | chr1_2:48267850-48267869 | None:intergenic | 35.0% | |
| ACGGGTAAGTATATGAGAAT+CGG | - | chr1_2:48267856-48267875 | None:intergenic | 35.0% | |
| TTCAAATTCTCATCCCTGTT+GGG | - | chr1_2:48267892-48267911 | None:intergenic | 35.0% | |
| AAATTATTCAATGCGAGGAC+GGG | - | chr1_2:48267958-48267977 | None:intergenic | 35.0% | |
| AAAGGAGCGACTAAATCAAT+CGG | - | chr1_2:48268072-48268091 | None:intergenic | 35.0% | |
| ! | GTAATTTTCTGCATTCGAGA+CGG | + | chr1_2:48268159-48268178 | Msa0074090:intron | 35.0% |
| ! | TAATTTTCTGCATTCGAGAC+GGG | + | chr1_2:48268160-48268179 | Msa0074090:intron | 35.0% |
| TCAAAACATGGATATGGGAT+GGG | - | chr1_2:48268226-48268245 | None:intergenic | 35.0% | |
| TTCAAAACATGGATATGGGA+TGG | - | chr1_2:48268227-48268246 | None:intergenic | 35.0% | |
| CCGATTTCAAAACATGGATA+TGG | - | chr1_2:48268232-48268251 | None:intergenic | 35.0% | |
| ! | TTTTCCCCGATTTCAAAACA+TGG | - | chr1_2:48268238-48268257 | None:intergenic | 35.0% |
| AATTATCAAACTGTGGCTAG+TGG | - | chr1_2:48268384-48268403 | None:intergenic | 35.0% | |
| TGTCGTAGAAGTTCATGTTA+AGG | + | chr1_2:48268705-48268724 | Msa0074090:intron | 35.0% | |
| TGCCAAATAAGAGAGAATTG+TGG | + | chr1_2:48268903-48268922 | Msa0074090:intron | 35.0% | |
| GCCAAATAAGAGAGAATTGT+GGG | + | chr1_2:48268904-48268923 | Msa0074090:intron | 35.0% | |
| ACCCACAATTCTCTCTTATT+TGG | - | chr1_2:48268908-48268927 | None:intergenic | 35.0% | |
| TCAAATTGATACCAATGGAC+AGG | + | chr1_2:48269080-48269099 | Msa0074090:CDS | 35.0% | |
| CAAATTGATACCAATGGACA+GGG | + | chr1_2:48269081-48269100 | Msa0074090:CDS | 35.0% | |
| !! | ACTGTACATGACTTGCTATT+TGG | + | chr1_2:48269329-48269348 | Msa0074090:intron | 35.0% |
| ACATAACAAGATTGCACTTG+TGG | + | chr1_2:48269383-48269402 | Msa0074090:intron | 35.0% | |
| CCGCTGAAATGATGATAATA+AGG | + | chr1_2:48269805-48269824 | Msa0074090:intron | 35.0% | |
| ! | GGTGGTTTTCCTAGAAAAAA+TGG | - | chr1_2:48269883-48269902 | None:intergenic | 35.0% |
| ACGTGAGTACATCAATATGT+TGG | + | chr1_2:48270016-48270035 | Msa0074090:intron | 35.0% | |
| CGTGAGTACATCAATATGTT+GGG | + | chr1_2:48270017-48270036 | Msa0074090:intron | 35.0% | |
| GTGAGTACATCAATATGTTG+GGG | + | chr1_2:48270018-48270037 | Msa0074090:intron | 35.0% | |
| CCACAATATCAAAACTTAGG+GGG | - | chr1_2:48270738-48270757 | None:intergenic | 35.0% | |
| GCCACAATATCAAAACTTAG+GGG | - | chr1_2:48270739-48270758 | None:intergenic | 35.0% | |
| CTGCCACAATATCAAAACTT+AGG | - | chr1_2:48270741-48270760 | None:intergenic | 35.0% | |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | chr1_2:48270865-48270884 | None:intergenic | 35.0% |
| TGCTACAGTTGCAAAACTTA+GGG | + | chr1_2:48270869-48270888 | Msa0074090:intron | 35.0% | |
| !! | AGAGTGACATTGTTACTTTG+TGG | + | chr1_2:48271124-48271143 | Msa0074090:intron | 35.0% |
| !! | GAGTGACATTGTTACTTTGT+GGG | + | chr1_2:48271125-48271144 | Msa0074090:intron | 35.0% |
| TCAAAGCAAAAATCCTTTGC+AGG | + | chr1_2:48271324-48271343 | Msa0074090:intron | 35.0% | |
| GATTCACTCGCTAAAAAGAT+TGG | - | chr1_2:48271358-48271377 | None:intergenic | 35.0% | |
| ACTAGCAGTTGAGAAGTAAA+AGG | - | chr1_2:48271444-48271463 | None:intergenic | 35.0% | |
| ! | TTTGTTTGCTAATTGCTTGC+AGG | - | chr1_2:48271672-48271691 | None:intergenic | 35.0% |
| CGTGAAAAGTAGTAGCAAAT+TGG | - | chr1_2:48271717-48271736 | None:intergenic | 35.0% | |
| GATTCGGACAACATATATCA+TGG | + | chr1_2:48271744-48271763 | Msa0074090:intron | 35.0% | |
| !! | TTTTTAACGAGGAGCATAAC+TGG | + | chr1_2:48271901-48271920 | Msa0074090:intron | 35.0% |
| !! | TTTTAACGAGGAGCATAACT+GGG | + | chr1_2:48271902-48271921 | Msa0074090:intron | 35.0% |
| AAACTTAACAATCCCACATG+AGG | - | chr1_2:48271984-48272003 | None:intergenic | 35.0% | |
| GTGCCACACTATTAATTCAA+AGG | - | chr1_2:48272061-48272080 | None:intergenic | 35.0% | |
| TTACTGGCATCAATTAAAGC+CGG | + | chr1_2:48272179-48272198 | Msa0074090:intron | 35.0% | |
| GCTTGAATTTATAGGCTTCA+TGG | - | chr1_2:48272208-48272227 | None:intergenic | 35.0% | |
| !! | ACTGTTCTGTGTTCTTGTTT+TGG | + | chr1_2:48272319-48272338 | Msa0074090:CDS | 35.0% |
| !! | GTTTACACGAGTTGGATTTT+AGG | + | chr1_2:48272666-48272685 | Msa0074090:intron | 35.0% |
| ATTCAACTCAAATCCCACAA+AGG | - | chr1_2:48272791-48272810 | None:intergenic | 35.0% | |
| TAGGTGACAAACACTAAAAC+TGG | + | chr1_2:48273007-48273026 | Msa0074090:intron | 35.0% | |
| TATTGATCAATGCCACAATG+GGG | + | chr1_2:48273051-48273070 | Msa0074090:CDS | 35.0% | |
| GTTAGTAGTGTGTTTCCTTG+TGG | + | chr1_2:48266389-48266408 | Msa0074090:CDS | 40.0% | |
| TCAGAGTGCAAACAACGTTA+GGG | + | chr1_2:48266431-48266450 | Msa0074090:CDS | 40.0% | |
| ! | TATTTGCTACGCCATGACAA+GGG | - | chr1_2:48266543-48266562 | None:intergenic | 40.0% |
| ! | ATATTTGCTACGCCATGACA+AGG | - | chr1_2:48266544-48266563 | None:intergenic | 40.0% |
| TTGTCATGGCGTAGCAAATA+TGG | + | chr1_2:48266543-48266562 | Msa0074090:CDS | 40.0% | |
| CCAACAAGTTAGTGCAACAA+AGG | - | chr1_2:48266925-48266944 | None:intergenic | 40.0% | |
| ! | CCTTTGTTGCACTAACTTGT+TGG | + | chr1_2:48266922-48266941 | Msa0074090:intron | 40.0% |
| ! | CTTGTTGGGTTGTCTTTAGT+AGG | + | chr1_2:48266937-48266956 | Msa0074090:intron | 40.0% |
| ! | AGTCGATTCAGTTAAGGCAT+TGG | + | chr1_2:48267318-48267337 | Msa0074090:intron | 40.0% |
| ! | GTCGATTCAGTTAAGGCATT+GGG | + | chr1_2:48267319-48267338 | Msa0074090:intron | 40.0% |
| AACAAGTTCACATAGCCAAC+TGG | + | chr1_2:48267748-48267767 | Msa0074090:intron | 40.0% | |
| GTATATGAGAATCGGGTATG+GGG | - | chr1_2:48267848-48267867 | None:intergenic | 40.0% | |
| CGGGTAAGTATATGAGAATC+GGG | - | chr1_2:48267855-48267874 | None:intergenic | 40.0% | |
| GTTCAAATTCTCATCCCTGT+TGG | - | chr1_2:48267893-48267912 | None:intergenic | 40.0% | |
| AATTATTCAATGCGAGGACG+GGG | - | chr1_2:48267957-48267976 | None:intergenic | 40.0% | |
| !! | TTTTGACTGGGTTTGGGTAT+GGG | - | chr1_2:48268267-48268286 | None:intergenic | 40.0% |
| !!! | ATTTTGACTGGGTTTGGGTA+TGG | - | chr1_2:48268268-48268287 | None:intergenic | 40.0% |
| ATACCCAAACCCAGTCAAAA+TGG | + | chr1_2:48268267-48268286 | Msa0074090:intron | 40.0% | |
| TACCCAAACCCAGTCAAAAT+GGG | + | chr1_2:48268268-48268287 | Msa0074090:intron | 40.0% | |
| !!! | TTCCCATTTTGACTGGGTTT+GGG | - | chr1_2:48268273-48268292 | None:intergenic | 40.0% |
| !!! | TTTCCCATTTTGACTGGGTT+TGG | - | chr1_2:48268274-48268293 | None:intergenic | 40.0% |
| !!! | GGGTTTTTCCCATTTTGACT+GGG | - | chr1_2:48268279-48268298 | None:intergenic | 40.0% |
| ATGGGAAAAACCCGTCAAAT+TGG | + | chr1_2:48268286-48268305 | Msa0074090:intron | 40.0% | |
| TGGGAAAAACCCGTCAAATT+GGG | + | chr1_2:48268287-48268306 | Msa0074090:intron | 40.0% | |
| AAAACCCGTCAAATTGGGTT+TGG | + | chr1_2:48268292-48268311 | Msa0074090:intron | 40.0% | |
| !! | CGGTGCTACGTATACTTAAT+TGG | + | chr1_2:48269259-48269278 | Msa0074090:intron | 40.0% |
| CTCTTTCACACATGACATTC+TGG | - | chr1_2:48269409-48269428 | None:intergenic | 40.0% | |
| ACGTGTATGGTTATGTAAGG+TGG | - | chr1_2:48269901-48269920 | None:intergenic | 40.0% | |
| ! | GCAACTTTGGGAAAGTAAGA+GGG | - | chr1_2:48270676-48270695 | None:intergenic | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | + | chr1_2:48270681-48270700 | Msa0074090:intron | 40.0% |
| CAATATCAAAACTTAGGGGG+CGG | - | chr1_2:48270735-48270754 | None:intergenic | 40.0% | |
| !! | CCCCCTAAGTTTTGATATTG+TGG | + | chr1_2:48270735-48270754 | Msa0074090:intron | 40.0% |
| CTGCTACAGTTGCAAAACTT+AGG | + | chr1_2:48270868-48270887 | Msa0074090:intron | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | + | chr1_2:48270870-48270889 | Msa0074090:intron | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | + | chr1_2:48270871-48270890 | Msa0074090:intron | 40.0% | |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr1_2:48270681-48270700 | None:intergenic | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTA+AGG | + | chr1_2:48270931-48270950 | Msa0074090:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTAA+GGG | + | chr1_2:48270932-48270951 | Msa0074090:intron | 40.0% |
| TATTCTCTCTCGCGTGAAAA+TGG | - | chr1_2:48271290-48271309 | None:intergenic | 40.0% | |
| AAGCAAAAATCCTTTGCAGG+TGG | + | chr1_2:48271327-48271346 | Msa0074090:intron | 40.0% | |
| ! | GTAGTAGCAAATTGGCTTAC+TGG | - | chr1_2:48271709-48271728 | None:intergenic | 40.0% |
| !! | CTTTTCACGTTTTGCCGATT+CGG | + | chr1_2:48271728-48271747 | Msa0074090:intron | 40.0% |
| AACGACGAAGTAGAAACAGA+AGG | + | chr1_2:48271798-48271817 | Msa0074090:intron | 40.0% | |
| TTTATAGGCTTCATGGTTGC+CGG | - | chr1_2:48272201-48272220 | None:intergenic | 40.0% | |
| GAACAGTGACAACATGCATA+GGG | - | chr1_2:48272306-48272325 | None:intergenic | 40.0% | |
| AGAACAGTGACAACATGCAT+AGG | - | chr1_2:48272307-48272326 | None:intergenic | 40.0% | |
| ! | ATTAAATGTGGACTGCACAG+TGG | - | chr1_2:48272360-48272379 | None:intergenic | 40.0% |
| ! | TATTTGCTACGCCATGACAA+AGG | - | chr1_2:48266543-48266562 | None:intergenic | 40.0% |
| TTGTCATGGCGTAGCAAATA+TGG | + | chr1_2:48266543-48266562 | Msa0074090:CDS | 40.0% | |
| ATTGATCAATGCCACAATGG+GGG | + | chr1_2:48273052-48273071 | Msa0074090:CDS | 40.0% | |
| TCACTAACATCGTTCCCACA+AGG | - | chr1_2:48266407-48266426 | None:intergenic | 45.0% | |
| GTCAGAGTGCAAACAACGTT+AGG | + | chr1_2:48266430-48266449 | Msa0074090:CDS | 45.0% | |
| CAGTGTATACTGTGCTACCT+GGG | + | chr1_2:48266506-48266525 | Msa0074090:CDS | 45.0% | |
| CATGGCGTAGCAAATATGGT+TGG | + | chr1_2:48266547-48266566 | Msa0074090:CDS | 45.0% | |
| ! | TATGGTTGGACTGCCTTTTG+TGG | + | chr1_2:48266561-48266580 | Msa0074090:CDS | 45.0% |
| ! | ACCGGTAGTCGATTCAGTTA+AGG | + | chr1_2:48267312-48267331 | Msa0074090:intron | 45.0% |
| GCCTTAACTGAATCGACTAC+CGG | - | chr1_2:48267316-48267335 | None:intergenic | 45.0% | |
| AGACTGGGTCAATAGTCATG+CGG | - | chr1_2:48267385-48267404 | None:intergenic | 45.0% | |
| TATTGTGCTGCATGTAGGCA+TGG | + | chr1_2:48267784-48267803 | Msa0074090:intron | 45.0% | |
| CTGCATGTAGGCATGGTAAT+GGG | + | chr1_2:48267791-48267810 | Msa0074090:intron | 45.0% | |
| ! | TGCATGTAGGCATGGTAATG+GGG | + | chr1_2:48267792-48267811 | Msa0074090:intron | 45.0% |
| TTGGGTATGAGTAGGGTAAC+GGG | - | chr1_2:48267874-48267893 | None:intergenic | 45.0% | |
| GTTGGGTATGAGTAGGGTAA+CGG | - | chr1_2:48267875-48267894 | None:intergenic | 45.0% | |
| TTACCCTACTCATACCCAAC+AGG | + | chr1_2:48267875-48267894 | Msa0074090:intron | 45.0% | |
| TACCCTACTCATACCCAACA+GGG | + | chr1_2:48267876-48267895 | Msa0074090:intron | 45.0% | |
| ATCCCTGTTGGGTATGAGTA+GGG | - | chr1_2:48267881-48267900 | None:intergenic | 45.0% | |
| ATGGATATGGGATGGGTAAC+GGG | - | chr1_2:48268219-48268238 | None:intergenic | 45.0% | |
| CATGGATATGGGATGGGTAA+CGG | - | chr1_2:48268220-48268239 | None:intergenic | 45.0% | |
| !! | CGGGTTTTTCCCATTTTGAC+TGG | - | chr1_2:48268280-48268299 | None:intergenic | 45.0% |
| CGAACCAAACCCAATTTGAC+GGG | - | chr1_2:48268299-48268318 | None:intergenic | 45.0% | |
| CCGAACCAAACCCAATTTGA+CGG | - | chr1_2:48268300-48268319 | None:intergenic | 45.0% | |
| ! | CCGTCAAATTGGGTTTGGTT+CGG | + | chr1_2:48268297-48268316 | Msa0074090:intron | 45.0% |
| ! | CGTCAAATTGGGTTTGGTTC+GGG | + | chr1_2:48268298-48268317 | Msa0074090:intron | 45.0% |
| !! | AAATTGGGTTTGGTTCGGGA+GGG | + | chr1_2:48268302-48268321 | Msa0074090:intron | 45.0% |
| GGGAGGGTAACTACATGTAT+GGG | + | chr1_2:48268318-48268337 | Msa0074090:intron | 45.0% | |
| ! | GGTTGGTCAGTTAATCAGAC+CGG | - | chr1_2:48268523-48268542 | None:intergenic | 45.0% |
| !!! | TTTTAAAACCCAGACCGACC+CGG | - | chr1_2:48268586-48268605 | None:intergenic | 45.0% |
| CAGGTGACAAATACTGCAAC+TGG | + | chr1_2:48268985-48269004 | Msa0074090:intron | 45.0% | |
| AAATACTGCAACTGGAGCTC+AGG | + | chr1_2:48268993-48269012 | Msa0074090:CDS | 45.0% | |
| ! | TCAGGTAACGGTGAGAATAG+TGG | + | chr1_2:48269011-48269030 | Msa0074090:CDS | 45.0% |
| ATCTAAGTCCAGTCCACCAT+TGG | - | chr1_2:48269046-48269065 | None:intergenic | 45.0% | |
| GCAGTCTCACATGATGACAA+GGG | + | chr1_2:48269498-48269517 | Msa0074090:intron | 45.0% | |
| GTTGAAGTGATAGACGGCAT+AGG | - | chr1_2:48269594-48269613 | None:intergenic | 45.0% | |
| !! | CTCGGTGTTGAAGTGATAGA+CGG | - | chr1_2:48269600-48269619 | None:intergenic | 45.0% |
| ! | TTGACGTTTTACAAGCGGTG+TGG | - | chr1_2:48270197-48270216 | None:intergenic | 45.0% |
| ! | CAGGCTTGACGTTTTACAAG+CGG | - | chr1_2:48270202-48270221 | None:intergenic | 45.0% |
| TCGCGACACATGACAAAACA+TGG | - | chr1_2:48270475-48270494 | None:intergenic | 45.0% | |
| ! | CGCAACTTTGGGAAAGTAAG+AGG | - | chr1_2:48270933-48270952 | None:intergenic | 45.0% |
| AGCGTAGACCGAGTCAAAAT+GGG | - | chr1_2:48270779-48270798 | None:intergenic | 45.0% | |
| GACATGTGACACCTCACTTA+GGG | - | chr1_2:48270811-48270830 | None:intergenic | 45.0% | |
| TGACATGTGACACCTCACTT+AGG | - | chr1_2:48270812-48270831 | None:intergenic | 45.0% | |
| ! | CGCAACTTTGGGAAAGTAAG+GGG | + | chr1_2:48270933-48270952 | Msa0074090:intron | 45.0% |
| ! | GCAACTTTGGGAAAGTAAGG+GGG | + | chr1_2:48270934-48270953 | Msa0074090:intron | 45.0% |
| ! | CTCTCGCGTGAAAATGGATT+AGG | - | chr1_2:48271284-48271303 | None:intergenic | 45.0% |
| TAACAATCCCACATGAGGCT+CGG | - | chr1_2:48271979-48271998 | None:intergenic | 45.0% | |
| TGTGGCACAAAGATGCGTTA+AGG | + | chr1_2:48272073-48272092 | Msa0074090:intron | 45.0% | |
| ACAACCCTGAGCAACATAAC+TGG | + | chr1_2:48272384-48272403 | Msa0074090:CDS | 45.0% | |
| CAACCCTGAGCAACATAACT+GGG | + | chr1_2:48272385-48272404 | Msa0074090:CDS | 45.0% | |
| AGTCCCAGTTATGTTGCTCA+GGG | - | chr1_2:48272391-48272410 | None:intergenic | 45.0% | |
| AAGTCCCAGTTATGTTGCTC+AGG | - | chr1_2:48272392-48272411 | None:intergenic | 45.0% | |
| ! | TGAGTGCATTTTGCGCAACA+TGG | + | chr1_2:48272420-48272439 | Msa0074090:CDS | 45.0% |
| ! | GAGTGCATTTTGCGCAACAT+GGG | + | chr1_2:48272421-48272440 | Msa0074090:CDS | 45.0% |
| !!! | AGTTGGATTTTAGGGCGAGT+CGG | + | chr1_2:48272675-48272694 | Msa0074090:intron | 45.0% |
| TTCTATCTGAGTCGAGCCTT+TGG | - | chr1_2:48273102-48273121 | None:intergenic | 45.0% | |
| AGATAGAAGTGGGAATGCTC+AGG | + | chr1_2:48273114-48273133 | Msa0074090:CDS | 45.0% | |
| GATAGAAGTGGGAATGCTCA+GGG | + | chr1_2:48273115-48273134 | Msa0074090:CDS | 45.0% | |
| !!! | TTTTGAATAAAATTAAATTT+TGG | + | chr1_2:48268631-48268650 | Msa0074090:intron | 5.0% |
| !!! | CTATTTTAAAATTTATATAT+TGG | + | chr1_2:48272618-48272637 | Msa0074090:intron | 5.0% |
| GTGGGAACGATGTTAGTGAG+TGG | + | chr1_2:48266408-48266427 | Msa0074090:CDS | 50.0% | |
| CCAGGTAGCACAGTATACAC+TGG | - | chr1_2:48266508-48266527 | None:intergenic | 50.0% | |
| CCAGTGTATACTGTGCTACC+TGG | + | chr1_2:48266505-48266524 | Msa0074090:CDS | 50.0% | |
| ATGCAAACCAGCCCTTGTCA+TGG | + | chr1_2:48266529-48266548 | Msa0074090:CDS | 50.0% | |
| CCAACAGGCAGAGATTCTTG+CGG | + | chr1_2:48266594-48266613 | Msa0074090:CDS | 50.0% | |
| AACTGAATCGACTACCGGTC+CGG | - | chr1_2:48267311-48267330 | None:intergenic | 50.0% | |
| GCATTGGGTCATTGAGTCAG+TGG | + | chr1_2:48267334-48267353 | Msa0074090:intron | 50.0% | |
| TGGGTCATTGAGTCAGTGGT+CGG | + | chr1_2:48267338-48267357 | Msa0074090:intron | 50.0% | |
| GCTGCATGTAGGCATGGTAA+TGG | + | chr1_2:48267790-48267809 | Msa0074090:intron | 50.0% | |
| !! | ATGTAGGCATGGTAATGGGG+CGG | + | chr1_2:48267795-48267814 | Msa0074090:intron | 50.0% |
| CATCCCTGTTGGGTATGAGT+AGG | - | chr1_2:48267882-48267901 | None:intergenic | 50.0% | |
| ! | TTCTGCATTCGAGACGGGTT+TGG | + | chr1_2:48268165-48268184 | Msa0074090:intron | 50.0% |
| ! | TCTGCATTCGAGACGGGTTT+GGG | + | chr1_2:48268166-48268185 | Msa0074090:intron | 50.0% |
| ! | ATTCGAGACGGGTTTGGGTA+TGG | + | chr1_2:48268171-48268190 | Msa0074090:intron | 50.0% |
| ! | TTCGAGACGGGTTTGGGTAT+GGG | + | chr1_2:48268172-48268191 | Msa0074090:intron | 50.0% |
| ACGGGTTTGGGTATGGGTTT+GGG | + | chr1_2:48268178-48268197 | Msa0074090:intron | 50.0% | |
| ! | TTTGGGTATGGGTTTGGGGT+GGG | + | chr1_2:48268183-48268202 | Msa0074090:intron | 50.0% |
| !! | GGGATGGGTAACGGGTATAT+AGG | - | chr1_2:48268211-48268230 | None:intergenic | 50.0% |
| CTGGGTTTGGGTATGGGTTT+GGG | - | chr1_2:48268261-48268280 | None:intergenic | 50.0% | |
| ACTGGGTTTGGGTATGGGTT+TGG | - | chr1_2:48268262-48268281 | None:intergenic | 50.0% | |
| !! | CAAATTGGGTTTGGTTCGGG+AGG | + | chr1_2:48268301-48268320 | Msa0074090:intron | 50.0% |
| CGGGAGGGTAACTACATGTA+TGG | + | chr1_2:48268317-48268336 | Msa0074090:intron | 50.0% | |
| TGGCTAGTGGTAGTTGAACC+GGG | - | chr1_2:48268371-48268390 | None:intergenic | 50.0% | |
| GTGGCTAGTGGTAGTTGAAC+CGG | - | chr1_2:48268372-48268391 | None:intergenic | 50.0% | |
| TCCTGGGTTGCTTGCATATC+CGG | + | chr1_2:48268501-48268520 | Msa0074090:intron | 50.0% | |
| ! | GTGGTGATGACTGATGATGC+AGG | + | chr1_2:48268966-48268985 | Msa0074090:intron | 50.0% |
| TGCAACTGGAGCTCAGGTAA+CGG | + | chr1_2:48268999-48269018 | Msa0074090:CDS | 50.0% | |
| !! | ATAGTGGACCAGTGCTCCAA+TGG | + | chr1_2:48269027-48269046 | Msa0074090:CDS | 50.0% |
| ATTCTGAACGCCCTGTCCAT+TGG | - | chr1_2:48269094-48269113 | None:intergenic | 50.0% | |
| ! | AATGGACAGGGCGTTCAGAA+TGG | + | chr1_2:48269093-48269112 | Msa0074090:CDS | 50.0% |
| CGCAGTCTCACATGATGACA+AGG | + | chr1_2:48269497-48269516 | Msa0074090:intron | 50.0% | |
| CGTCTATCACTTCAACACCG+AGG | + | chr1_2:48269598-48269617 | Msa0074090:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | - | chr1_2:48270922-48270941 | None:intergenic | 50.0% | |
| AGGGGCCAAAATCGCAACTT+TGG | - | chr1_2:48270921-48270940 | None:intergenic | 50.0% | |
| ACCGAGTCAAAATGGGCCTT+GGG | - | chr1_2:48270772-48270791 | None:intergenic | 50.0% | |
| CAGCGTAGACCGAGTCAAAA+TGG | - | chr1_2:48270780-48270799 | None:intergenic | 50.0% | |
| AGGGGCCAAAATCGCAACTT+TGG | + | chr1_2:48270921-48270940 | Msa0074090:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | + | chr1_2:48270922-48270941 | Msa0074090:intron | 50.0% | |
| ATTGGGCATTCCACCTGCAA+AGG | - | chr1_2:48271340-48271359 | None:intergenic | 50.0% | |
| ! | TGGCTCTACACCTCTACACA+AGG | + | chr1_2:48271764-48271783 | Msa0074090:intron | 50.0% |
| ATGCAGACCAGCCTTTGTCA+TGG | + | chr1_2:48272444-48272463 | Msa0074090:CDS | 50.0% | |
| CATGGCGTAGCAAATATGGC+TGG | + | chr1_2:48272462-48272481 | Msa0074090:CDS | 50.0% | |
| TTCTTGTGGCCGTTGCTTGA+GGG | + | chr1_2:48272523-48272542 | Msa0074090:CDS | 50.0% | |
| CCAAGCATACCCTCAAGCAA+CGG | - | chr1_2:48272535-48272554 | None:intergenic | 50.0% | |
| CCAAGTCTAATCCCCCATTG+TGG | - | chr1_2:48273066-48273085 | None:intergenic | 50.0% | |
| CCACAATGGGGGATTAGACT+TGG | + | chr1_2:48273063-48273082 | Msa0074090:CDS | 50.0% | |
| TGGACGTTGGTGTGTTCCAA+AGG | + | chr1_2:48273083-48273102 | Msa0074090:CDS | 50.0% | |
| AGGCTCGACTCAGATAGAAG+TGG | + | chr1_2:48273103-48273122 | Msa0074090:CDS | 50.0% | |
| GGCTCGACTCAGATAGAAGT+GGG | + | chr1_2:48273104-48273123 | Msa0074090:CDS | 50.0% | |
| ! | ACTGCCTTTTGTGGACCAGC+CGG | + | chr1_2:48266570-48266589 | Msa0074090:CDS | 55.0% |
| AGAATCTCTGCCTGTTGGCC+CGG | - | chr1_2:48266592-48266611 | None:intergenic | 55.0% | |
| CCGCAAGAATCTCTGCCTGT+TGG | - | chr1_2:48266597-48266616 | None:intergenic | 55.0% | |
| TGAGTCAGTGGTCGGACCAA+TGG | + | chr1_2:48267346-48267365 | Msa0074090:intron | 55.0% | |
| GAGTCAGTGGTCGGACCAAT+GGG | + | chr1_2:48267347-48267366 | Msa0074090:intron | 55.0% | |
| !! | TGTAGGCATGGTAATGGGGC+GGG | + | chr1_2:48267796-48267815 | Msa0074090:intron | 55.0% |
| ATACCCGAACCCGTCAGGAA+CGG | - | chr1_2:48267923-48267942 | None:intergenic | 55.0% | |
| TTCAATGCGAGGACGGGGAT+GGG | - | chr1_2:48267952-48267971 | None:intergenic | 55.0% | |
| ATTCAATGCGAGGACGGGGA+TGG | - | chr1_2:48267953-48267972 | None:intergenic | 55.0% | |
| ! | GACGGGTTTGGGTATGGGTT+TGG | + | chr1_2:48268177-48268196 | Msa0074090:intron | 55.0% |
| CGGGTTTGGGTATGGGTTTG+GGG | + | chr1_2:48268179-48268198 | Msa0074090:intron | 55.0% | |
| GTTTGGGTATGGGTTTGGGG+TGG | + | chr1_2:48268182-48268201 | Msa0074090:intron | 55.0% | |
| CATGCCTAGCTGCATGTACC+CGG | + | chr1_2:48268350-48268369 | Msa0074090:intron | 55.0% | |
| TGAACCGGGTACATGCAGCT+AGG | - | chr1_2:48268357-48268376 | None:intergenic | 55.0% | |
| GTTATGACCCACCAGCGAAC+CGG | - | chr1_2:48268436-48268455 | None:intergenic | 55.0% | |
| ! | GGTTCGCTGGTGGGTCATAA+CGG | + | chr1_2:48268435-48268454 | Msa0074090:intron | 55.0% |
| TGCAAGCAACCCAGGAAACC+CGG | - | chr1_2:48268497-48268516 | None:intergenic | 55.0% | |
| ACCGGATATGCAAGCAACCC+AGG | - | chr1_2:48268505-48268524 | None:intergenic | 55.0% | |
| CCGAGTCAAAATGGGCCTTG+GGG | - | chr1_2:48270771-48270790 | None:intergenic | 55.0% | |
| !!! | CCCCAAGGCCCATTTTGACT+CGG | + | chr1_2:48270768-48270787 | Msa0074090:intron | 55.0% |
| GACCGAGTCAAAATGGGCCT+TGG | - | chr1_2:48270773-48270792 | None:intergenic | 55.0% | |
| CTGACGTGGTACCCTAAGTG+AGG | + | chr1_2:48270797-48270816 | Msa0074090:intron | 55.0% | |
| TCCTTTGTCCGAGCCTCATG+TGG | + | chr1_2:48271968-48271987 | Msa0074090:intron | 55.0% | |
| CCTTTGTCCGAGCCTCATGT+GGG | + | chr1_2:48271969-48271988 | Msa0074090:intron | 55.0% | |
| TGCTACGCCATGACAAAGGC+TGG | - | chr1_2:48272454-48272473 | None:intergenic | 55.0% | |
| TATGGCTGGACTGCCTTCTG+TGG | + | chr1_2:48272476-48272495 | Msa0074090:CDS | 55.0% | |
| !! | CCACAAGAAGCTTGGCCTTG+AGG | - | chr1_2:48272512-48272531 | None:intergenic | 55.0% |
| CCTCAAGGCCAAGCTTCTTG+TGG | + | chr1_2:48272509-48272528 | Msa0074090:CDS | 55.0% | |
| AGCAACGGCCACAAGAAGCT+TGG | - | chr1_2:48272520-48272539 | None:intergenic | 55.0% | |
| CTTCTTGTGGCCGTTGCTTG+AGG | + | chr1_2:48272522-48272541 | Msa0074090:CDS | 55.0% | |
| ! | CCGTTGCTTGAGGGTATGCT+TGG | + | chr1_2:48272532-48272551 | Msa0074090:intron | 55.0% |
| GGGGGATTAGACTTGGACGT+TGG | + | chr1_2:48273070-48273089 | Msa0074090:CDS | 55.0% | |
| !! | CAAGGGCTGGTTTGCATCCC+AGG | - | chr1_2:48266526-48266545 | None:intergenic | 60.0% |
| TGCTACGCCATGACAAGGGC+TGG | - | chr1_2:48266539-48266558 | None:intergenic | 60.0% | |
| ! | CTGCCTTTTGTGGACCAGCC+GGG | + | chr1_2:48266571-48266590 | Msa0074090:CDS | 60.0% |
| TGGTCGGACCAATGGGTCAC+TGG | + | chr1_2:48267354-48267373 | Msa0074090:intron | 60.0% | |
| CGGACCAATGGGTCACTGGT+TGG | + | chr1_2:48267358-48267377 | Msa0074090:intron | 60.0% | |
| CGGTCCAACCAGTGACCCAT+TGG | - | chr1_2:48267365-48267384 | None:intergenic | 60.0% | |
| !! | GTAGGCATGGTAATGGGGCG+GGG | + | chr1_2:48267797-48267816 | Msa0074090:intron | 60.0% |
| AACCCCATCCCCGTTCCTGA+CGG | + | chr1_2:48267910-48267929 | Msa0074090:intron | 60.0% | |
| AACCCGTCAGGAACGGGGAT+GGG | - | chr1_2:48267916-48267935 | None:intergenic | 60.0% | |
| !! | ATCCCCGTTCCTGACGGGTT+CGG | + | chr1_2:48267916-48267935 | Msa0074090:intron | 60.0% |
| TACCCGAACCCGTCAGGAAC+GGG | - | chr1_2:48267922-48267941 | None:intergenic | 60.0% | |
| TCAATGCGAGGACGGGGATG+GGG | - | chr1_2:48267951-48267970 | None:intergenic | 60.0% | |
| ! | TAGAATCCGGTCCGGTTCGC+TGG | + | chr1_2:48268422-48268441 | Msa0074090:intron | 60.0% |
| TGCGGGTCGGGTGGACAAAT+CGG | - | chr1_2:48268465-48268484 | None:intergenic | 60.0% | |
| ATTTGTCCACCCGACCCGCA+CGG | + | chr1_2:48268465-48268484 | Msa0074090:intron | 60.0% | |
| AAACCCGGTATGACCCGTGC+GGG | - | chr1_2:48268482-48268501 | None:intergenic | 60.0% | |
| GAAACCCGGTATGACCCGTG+CGG | - | chr1_2:48268483-48268502 | None:intergenic | 60.0% | |
| ACGGGTCATACCGGGTTTCC+TGG | + | chr1_2:48268484-48268503 | Msa0074090:intron | 60.0% | |
| CGGGTCATACCGGGTTTCCT+GGG | + | chr1_2:48268485-48268504 | Msa0074090:intron | 60.0% | |
| AAAACCCAGACCGACCCGGT+CGG | - | chr1_2:48268582-48268601 | None:intergenic | 60.0% | |
| GTGGACCAGTGCTCCAATGG+TGG | + | chr1_2:48269030-48269049 | Msa0074090:CDS | 60.0% | |
| CCAGTCCACCATTGGAGCAC+TGG | - | chr1_2:48269038-48269057 | None:intergenic | 60.0% | |
| !! | CCAGTGCTCCAATGGTGGAC+TGG | + | chr1_2:48269035-48269054 | Msa0074090:CDS | 60.0% |
| !!! | TGTGGCAGTTTTGGGCCCCA+AGG | + | chr1_2:48270753-48270772 | Msa0074090:intron | 60.0% |
| !! | TGACTCGGTCTACGCTGACG+TGG | + | chr1_2:48270783-48270802 | Msa0074090:intron | 60.0% |
| !! | GTAGCAGTTTTGGCCCCCCA+AGG | - | chr1_2:48270855-48270874 | None:intergenic | 60.0% |
| CCCACATGAGGCTCGGACAA+AGG | - | chr1_2:48271972-48271991 | None:intergenic | 60.0% | |
| ACTGCCTTCTGTGGACCTGC+TGG | + | chr1_2:48272485-48272504 | Msa0074090:CDS | 60.0% | |
| CTGCCTTCTGTGGACCTGCT+GGG | + | chr1_2:48272486-48272505 | Msa0074090:CDS | 60.0% | |
| ! | TGGCCCGGCTGGTCCACAAA+AGG | - | chr1_2:48266577-48266596 | None:intergenic | 65.0% |
| TAATGGGGCGGGGTGGAGAC+AGG | + | chr1_2:48267807-48267826 | Msa0074090:intron | 65.0% | |
| ACCCCATCCCCGTTCCTGAC+GGG | + | chr1_2:48267911-48267930 | Msa0074090:intron | 65.0% | |
| ACCCGTCAGGAACGGGGATG+GGG | - | chr1_2:48267915-48267934 | None:intergenic | 65.0% | |
| GAACCCGTCAGGAACGGGGA+TGG | - | chr1_2:48267917-48267936 | None:intergenic | 65.0% | |
| !! | TCCCCGTTCCTGACGGGTTC+GGG | + | chr1_2:48267917-48267936 | Msa0074090:intron | 65.0% |
| ACCCGAACCCGTCAGGAACG+GGG | - | chr1_2:48267921-48267940 | None:intergenic | 65.0% | |
| CGAGGATACCCGAACCCGTC+AGG | - | chr1_2:48267928-48267947 | None:intergenic | 65.0% | |
| ! | AATCCGGTCCGGTTCGCTGG+TGG | + | chr1_2:48268425-48268444 | Msa0074090:intron | 65.0% |
| ! | ATCCGGTCCGGTTCGCTGGT+GGG | + | chr1_2:48268426-48268445 | Msa0074090:intron | 65.0% |
| TTTGTCCACCCGACCCGCAC+GGG | + | chr1_2:48268466-48268485 | Msa0074090:intron | 65.0% | |
| AGGCCCAGCAGGTCCACAGA+AGG | - | chr1_2:48272492-48272511 | None:intergenic | 65.0% | |
| TGTGGACCTGCTGGGCCTCA+AGG | + | chr1_2:48272494-48272513 | Msa0074090:CDS | 65.0% | |
| TGTGGACCAGCCGGGCCAAC+AGG | + | chr1_2:48266579-48266598 | Msa0074090:CDS | 70.0% | |
| TCTCTGCCTGTTGGCCCGGC+TGG | - | chr1_2:48266588-48266607 | None:intergenic | 70.0% | |
| !! | GGCATGGTAATGGGGCGGGG+TGG | + | chr1_2:48267800-48267819 | Msa0074090:intron | 70.0% |
| GACCCACCAGCGAACCGGAC+CGG | - | chr1_2:48268431-48268450 | None:intergenic | 70.0% | |
| TATGACCCGTGCGGGTCGGG+TGG | - | chr1_2:48268474-48268493 | None:intergenic | 70.0% | |
| CGGTATGACCCGTGCGGGTC+GGG | - | chr1_2:48268477-48268496 | None:intergenic | 70.0% | |
| CCGGTATGACCCGTGCGGGT+CGG | - | chr1_2:48268478-48268497 | None:intergenic | 70.0% | |
| CCGACCCGCACGGGTCATAC+CGG | + | chr1_2:48268475-48268494 | Msa0074090:intron | 70.0% | |
| CGACCCGCACGGGTCATACC+GGG | + | chr1_2:48268476-48268495 | Msa0074090:intron | 70.0% | |
| TGACCAACCCGCCCACCCCT+CGG | + | chr1_2:48268534-48268553 | Msa0074090:intron | 70.0% | |
| GAACCGGCAACCCGAGGGGT+GGG | - | chr1_2:48268548-48268567 | None:intergenic | 70.0% | |
| GGTCGAACCGGCAACCCGAG+GGG | - | chr1_2:48268552-48268571 | None:intergenic | 70.0% | |
| CGGTCGAACCGGCAACCCGA+GGG | - | chr1_2:48268553-48268572 | None:intergenic | 70.0% | |
| !! | GGGTTGCCGGTTCGACCGCT+CGG | + | chr1_2:48268555-48268574 | Msa0074090:intron | 70.0% |
| GTCGGTCCGAGCGGTCGAAC+CGG | - | chr1_2:48268564-48268583 | None:intergenic | 70.0% | |
| GTTCGACCGCTCGGACCGAC+CGG | + | chr1_2:48268564-48268583 | Msa0074090:intron | 70.0% | |
| TTCGACCGCTCGGACCGACC+GGG | + | chr1_2:48268565-48268584 | Msa0074090:intron | 70.0% | |
| !! | GCTTGGCCTTGAGGCCCAGC+AGG | - | chr1_2:48272503-48272522 | None:intergenic | 70.0% |
| GACCAACCCGCCCACCCCTC+GGG | + | chr1_2:48268535-48268554 | Msa0074090:intron | 75.0% | |
| AACCCGAGGGGTGGGCGGGT+TGG | - | chr1_2:48268540-48268559 | None:intergenic | 75.0% | |
| CGAACCGGCAACCCGAGGGG+TGG | - | chr1_2:48268549-48268568 | None:intergenic | 75.0% | |
| GCGGTCGAACCGGCAACCCG+AGG | - | chr1_2:48268554-48268573 | None:intergenic | 75.0% | |
| ACCGCTCGGACCGACCGGGT+CGG | + | chr1_2:48268569-48268588 | Msa0074090:intron | 75.0% | |
| ACCGACCCGGTCGGTCCGAG+CGG | - | chr1_2:48268573-48268592 | None:intergenic | 75.0% | |
| TCGGACCGACCGGGTCGGTC+TGG | + | chr1_2:48268574-48268593 | Msa0074090:intron | 75.0% | |
| CGGACCGACCGGGTCGGTCT+GGG | + | chr1_2:48268575-48268594 | Msa0074090:intron | 75.0% | |
| ! | GCGAGGACGGGGATGGGGCG+AGG | - | chr1_2:48267946-48267965 | None:intergenic | 80.0% |
| ! | CGGCAACCCGAGGGGTGGGC+GGG | - | chr1_2:48268544-48268563 | None:intergenic | 80.0% |
| ! | CCGGCAACCCGAGGGGTGGG+CGG | - | chr1_2:48268545-48268564 | None:intergenic | 80.0% |
| !! | CCGCCCACCCCTCGGGTTGC+CGG | + | chr1_2:48268542-48268561 | Msa0074090:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 48266298 | 48273180 | 48266298 | ID=Msa0074090;Name=Msa0074090 |
| chr1_2 | mRNA | 48266298 | 48273180 | 48266298 | ID=Msa0074090-mRNA-1;Parent=Msa0074090;Name=Msa0074090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=62|0.33|0.25|1|0.66|0.5|4|0|274 |
| chr1_2 | exon | 48266298 | 48266629 | 48266298 | ID=Msa0074090-mRNA-1:exon:14648;Parent=Msa0074090-mRNA-1 |
| chr1_2 | exon | 48268988 | 48269125 | 48268988 | ID=Msa0074090-mRNA-1:exon:14649;Parent=Msa0074090-mRNA-1 |
| chr1_2 | exon | 48272299 | 48272544 | 48272299 | ID=Msa0074090-mRNA-1:exon:14650;Parent=Msa0074090-mRNA-1 |
| chr1_2 | exon | 48273010 | 48273180 | 48273010 | ID=Msa0074090-mRNA-1:exon:14651;Parent=Msa0074090-mRNA-1 |
| chr1_2 | five_prime_UTR | 48266298 | 48266359 | 48266298 | ID=Msa0074090-mRNA-1:five_prime_utr;Parent=Msa0074090-mRNA-1 |
| chr1_2 | CDS | 48266360 | 48266629 | 48266360 | ID=Msa0074090-mRNA-1:cds;Parent=Msa0074090-mRNA-1 |
| chr1_2 | CDS | 48268988 | 48269125 | 48268988 | ID=Msa0074090-mRNA-1:cds;Parent=Msa0074090-mRNA-1 |
| chr1_2 | CDS | 48272299 | 48272544 | 48272299 | ID=Msa0074090-mRNA-1:cds;Parent=Msa0074090-mRNA-1 |
| chr1_2 | CDS | 48273010 | 48273180 | 48273010 | ID=Msa0074090-mRNA-1:cds;Parent=Msa0074090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
